Citrus Sinensis ID: 000522
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1445 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKX0 | 1410 | ABC transporter C family | yes | no | 0.946 | 0.969 | 0.648 | 0.0 | |
| Q5T3U5 | 1492 | Multidrug resistance-asso | yes | no | 0.838 | 0.811 | 0.390 | 0.0 | |
| Q8R4P9 | 1501 | Multidrug resistance-asso | yes | no | 0.864 | 0.832 | 0.376 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | no | no | 0.777 | 0.728 | 0.360 | 0.0 | |
| B2RX12 | 1523 | Canalicular multispecific | no | no | 0.789 | 0.749 | 0.353 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | no | no | 0.776 | 0.726 | 0.364 | 0.0 | |
| O35379 | 1528 | Multidrug resistance-asso | no | no | 0.797 | 0.753 | 0.351 | 0.0 | |
| O15438 | 1527 | Canalicular multispecific | no | no | 0.790 | 0.747 | 0.354 | 0.0 | |
| Q8CG09 | 1532 | Multidrug resistance-asso | no | no | 0.797 | 0.752 | 0.351 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | no | no | 0.792 | 0.750 | 0.351 | 0.0 |
| >sp|Q9SKX0|AB13C_ARATH ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1799 bits (4659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1424 (64%), Positives = 1114/1424 (78%), Gaps = 57/1424 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNT-DSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 256
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 257 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 316
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 317 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 676
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 677 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 854
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 855 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 914
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 915 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1034
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPA 1154
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1155 TFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1214
+F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1335 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G L G
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQG 1389
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q5T3U5|MRP7_HUMAN Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/1310 (39%), Positives = 736/1310 (56%), Gaps = 99/1310 (7%)
Query: 178 ASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQL-DFEDL 236
R +E LL D + E + + +S+ ++ + ++ RG +L +D+
Sbjct: 193 GGPREPWAQEPLLPEDQEPEV-----AEDGESWLSRFSYAWLAPLLARGACGELRQPQDI 247
Query: 237 LGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGF 296
LP + P+ + WQ L RA+ A+G Y+ LGLLK+V +GF
Sbjct: 248 CRLPHRLQPTYLARVFQAHWQ-------EGARLWRALYGAFGRCYLALGLLKLVGTMLGF 300
Query: 297 AGPLLLNKLIKFLQQGSGHLD-GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM 355
+GPLLL+ L+ FL++G L G + A+ L ++L + QY + + K+ L+ R +++
Sbjct: 301 SGPLLLSLLVGFLEEGQEPLSHGLLYALGLAGGAVLGAVLQNQYGYEVYKVTLQARGAVL 360
Query: 356 TIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYT 415
I+Y K L + S GE + D++R +N A SFH+AW LP Q+ + LYLLY
Sbjct: 361 NILYCKALQL---GPSRPPTGEALNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQ 417
Query: 416 QVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGW 475
QV AFV GL + +LL+PVNK IA I + ++M++ KD R++ E+L+ IR +K GW
Sbjct: 418 QVGVAFVGGLILALLLVPVNKVIATRIMASNQEMLQHKDARVKLVTELLSGIRVIKFCGW 477
Query: 476 EQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMV 535
EQ + + R+ E+ L KYLDA CV+ WA P + S+ F + LMGHQL A V
Sbjct: 478 EQALGARVEACRARELGRLRVIKYLDAACVYLWAALPVVISIVIFITYVLMGHQLTATKV 537
Query: 536 FTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNG 595
FT LAL LI PLN+FPWVINGL++A +S+ R+ FL + + + + P+ S
Sbjct: 538 FTALALVRMLILPLNNFPWVINGLLEAKVSLDRIQLFLDLPNHNPQAYYSPDPPAEPSTV 597
Query: 596 LSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN 655
L + A SW + + + L + KG LV ++G+VG GKSSLL
Sbjct: 598 LE----------LHGALFSWDPVGTSLETFISH---LEVKKGMLVGIVGKVGCGKSSLLA 644
Query: 656 SILGEMMLTHGSIHASG---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL 712
+I GE+ G + G Q PWI TIRDNILFGK +D Q Y E L+AC L
Sbjct: 645 AIAGELHRLRGHVAVRGLSKGFGLATQEPWIQFATIRDNILFGKTFDAQLYKEVLEACAL 704
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI 772
+ D+S++ GD +GEKGV LSGGQRAR+ALARAVY ++Y+LDD L+AVDA VA +
Sbjct: 705 NDDLSILPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKELYLLDDPLAAVDADVANHL 764
Query: 773 LSNAIMGPHMLQ-KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFW 829
L I+G ML TR+LCTH + + AD V++M+ G++ G +++ V W
Sbjct: 765 LHRCILG--MLSYTTRLLCTHRTEYLERADAVLLMEAGRLIRAGPPSEILPLVQAVPKAW 822
Query: 830 STN--EFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELT 887
+ N E D++ Q K+ L +E+ + +++ E +KEG V L
Sbjct: 823 AENGQESDSATAQSVQN-----PEKTKEGLEEEQST------SGRLLQEESKKEGAVALH 871
Query: 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT----TGSSQTKYSTS---- 939
VY+ Y K G + L I S +LMQA+RN D WLS+W+ S + + STS
Sbjct: 872 VYQAYWKAVGQGLALAILFSLLLMQATRNAADWWLSHWISQLKAENSSQEAQPSTSPASM 931
Query: 940 ----------------------------------FYLVVLCIFCMFNSFLTLVRAFSFAF 965
FYL V NS TL+RA FA
Sbjct: 932 GLFSPQLLLFSPGNLYIPVFPLPKAAPNGSSDIRFYLTVYATIAGVNSLCTLLRAVLFAA 991
Query: 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFV 1025
G+L+AA +H LL +++ APV FF+ TP GRILNRFSSD+ DDSLPFILNILLAN
Sbjct: 992 GTLQAAATLHRRLLHRVLMAPVTFFNATPTGRILNRFSSDVACADDSLPFILNILLANAA 1051
Query: 1026 GLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETL 1085
GLLG+ VL + LLLL P +Y +Q YR++SRELRRL S++ SP+Y+ +TL
Sbjct: 1052 GLLGLLAVLGSGLPWLLLLLPPLSIMYYHVQRHYRASSRELRRLGSLTLSPLYSHLADTL 1111
Query: 1086 NGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145
G S +RA + F + + L QR ++ WL +RLQL+ A ++S IA +A+
Sbjct: 1112 AGLSVLRATGATYRFEEENLRLLELNQRCQFATSATMQWLDIRLQLMGAAVVSAIAGIAL 1171
Query: 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVPQ 1204
+ + L + PGLVGL+LSYA + LL +SSFT+TE +VS+ER+ EY D+PQ
Sbjct: 1172 VQHQQGL----ANPGLVGLSLSYALSLTGLLSGLVSSFTQTEAMLVSVERLEEYTCDLPQ 1227
Query: 1205 EELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS 1264
E L W QG +EFQ+V + Y+P LP AL + F ++ G ++GIVGRTG+GKS
Sbjct: 1228 EPQGQPLQLGTGWLTQGGVEFQDVVLAYRPGLPNALDGVTFCVQPGEKLGIVGRTGSGKS 1287
Query: 1265 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1324
S+L LFRL G++L+DG++ + LR + A++PQ PFLF G++R+NLDP ++
Sbjct: 1288 SLLLVLFRLLEPSSGRVLLDGVDTSQLELAQLRSQLAIIPQEPFLFSGTVRENLDPQGLH 1347
Query: 1325 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDE 1383
D +W L++CH+ E + ++G G S S+GQRQL+CLARALL +K+LC+DE
Sbjct: 1348 KDRALWQALKQCHLSEVITSMGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCIDE 1407
Query: 1384 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
TA+VD +T +LQ I TV+TIAHR++T+LN D +L+L G +
Sbjct: 1408 ATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRV 1457
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Homo sapiens (taxid: 9606) |
| >sp|Q8R4P9|MRP7_MOUSE Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/1355 (37%), Positives = 757/1355 (55%), Gaps = 106/1355 (7%)
Query: 141 QLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDC 200
Q TF + L +CL++L + ++ + + + LS + E
Sbjct: 156 QRGTFLPPLLPGPLGRVCLLILQLAAVLAYGLGWAAPGGPQEPWTHDPFLSSESQETEVA 215
Query: 201 NTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLD-FEDLLGLPTDMDPSTCHSKLLSCWQAQ 259
+ +S+ ++ + ++ RGV +L D LP + P+ + W+
Sbjct: 216 E----DGESWLSRFSYAWLAPLLARGVRGELQQPRDTCRLPRRLHPAFLARVFQAHWK-- 269
Query: 260 RSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG- 318
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L
Sbjct: 270 -----EGAQLWRALYRAFGCCYLALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHG 324
Query: 319 --YVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
YVL +A G +++ + QY + + K+ L+ R ++++ +Y+K L + S G
Sbjct: 325 LLYVLGLAGG--TVISAVLQNQYGYEVRKVTLQARVAVLSTLYRKALKL---GPSRPPTG 379
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
E+ + D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK
Sbjct: 380 EVLNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGMAFLAGLVLALLLVPVNK 439
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
IA I + ++M++ KD R++ E+L+ IR +K + WEQ + R+ E+ L
Sbjct: 440 VIATRIMASNQEMLRHKDARVKLMTELLSGIRVIKFFRWEQALGDRVKACRTKELGRLRV 499
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
KYLDA CV+ WA P + + F + LMGHQL A VFT LAL LI PLN+FPWVI
Sbjct: 500 IKYLDAACVYLWAALPVVICITIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVI 559
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGL+++ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 560 NGLLESKVSLDRIQRFLDLPSYSPEAYYSPDPPAEPSTALE----------LHEALFSWD 609
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGS 673
++ + + L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 610 PIGASQKTFISH---LQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSELSKG 666
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV
Sbjct: 667 FGLATQEPWIQCATIRDNILFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVT 726
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGGQRAR+ALARAVY +Y+LDD L+AVDA VA +L I+G + TR+LCTH
Sbjct: 727 LSGGQRARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCILG-VLSHTTRLLCTHR 785
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 851
+ + AD+V++M+ GQ+ G +++ V W+ +K+++ T+ S
Sbjct: 786 TEYLERADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWA----------EKEQVATSGQS 835
Query: 852 AN--KQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAI 909
+ E+++ +++ E + EG V L VY+ Y + G + I +S +
Sbjct: 836 PSVCDLERTTEEELEVEQSTCGCLVQEESKSEGAVALHVYRAYWRAMGSGLAAAILVSLL 895
Query: 910 LMQASRNGNDLWLSYWVDT-----TGSSQTKYSTS------------------------- 939
LMQA+RNG D WL++W+ GS + S S
Sbjct: 896 LMQATRNGADWWLAHWLSQLKAGRNGSREDPASCSPGSTALFSPRLLLFSPGNLYTPLLS 955
Query: 940 ---------------FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984
FYL+V NS TL+RA FA G+L+AA +H+ LL +++
Sbjct: 956 TPLHKAASNGTADVHFYLIVYATIAGVNSLCTLLRAVLFAAGALQAAASLHHRLLHRLLM 1015
Query: 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1044
APV F+D TP GR+LNRFSSD+ +DDSLPF+LNILLAN VGLLG+ VL + LLL
Sbjct: 1016 APVTFYDSTPSGRVLNRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGSGLPWLLLL 1075
Query: 1045 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104
L P F+Y +Q +YR++ RELRRL S++ SP+Y+ +TL G +RA + F +
Sbjct: 1076 LPPLSFVYYSVQGYYRASFRELRRLGSLTWSPLYSHLADTLAGLPVLRAAGATYRFEEEN 1135
Query: 1105 KEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGL 1164
+ + L QR ++ WL +RLQL+ A ++S IA +A++ + L + PGLVGL
Sbjct: 1136 QRLLELNQRCQFASYATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGL 1191
Query: 1165 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQE----ELCGYQSLSPDWPF 1219
LSYA + LL +SSFT+TE MVS+ER+ EY DVPQE L W
Sbjct: 1192 VLSYALSLTGLLSGLVSSFTQTEAMMVSVERLEEYSCDVPQEPHSQPLQSPHQQRISWLT 1251
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
QG +EFQ+V + Y+P LP AL + F +E G ++GIVGRTG+GKSS+ LFRL G
Sbjct: 1252 QGSVEFQDVVLVYRPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPNAG 1311
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
++L+D ++ + +LR + AV+PQ PFLF G++R+NLDP +++D +W LE+CH+
Sbjct: 1312 RVLLDNVDTSQLELAELRSQLAVIPQEPFLFSGTIRENLDPQGLHEDRALWQALEQCHLS 1371
Query: 1340 EEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
E A+ GL+ + E G + S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ
Sbjct: 1372 EVAVAMGGLDGELGERGQNLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQ 1431
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
I TV+TIAHR++T+LN D +L+L G +
Sbjct: 1432 TICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRV 1466
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Mus musculus (taxid: 10090) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/1219 (36%), Positives = 683/1219 (56%), Gaps = 96/1219 (7%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 344
+LK+++D + F P LL LI F++ + ++ GY+ AI + ++++SF Y H
Sbjct: 323 ILKLIHDLLVFLNPQLLKLLIGFVKSSNSYVWFGYICAILMFAVTLIQSFCLQSYFQHCF 382
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 404
L + +R+++M+ IY+K L + R +++ GE MSVD+ + ++ N WS
Sbjct: 383 VLGMCVRTTVMSSIYKKALTLSNLARKQYTIGETVNLMSVDSQKLMDATNYMQLVWSSVI 442
Query: 405 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 464
QI ++++ L+ ++ + ++G+ + +LLIPVN +A I N + MK KD+R++ EIL
Sbjct: 443 QITLSIFFLWRELGPSILAGVGVMVLLIPVNGVLATKIRNIQVQNMKNKDKRLKIMNEIL 502
Query: 465 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
+ I+ LK + WE F + R E+K+L L + +F TP L S+ TF ++
Sbjct: 503 SGIKILKYFAWEPSFQEQVQGIRKKELKNLLRFGQLQSLLIFILQITPILVSVVTFSVYV 562
Query: 525 LM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582
L+ + L+A FT + LFN L PL+ P V + ++ A +S+ RL R+LG + L
Sbjct: 563 LVDSANVLNAEKAFTSITLFNILRFPLSMLPMVTSSILQASVSVDRLERYLGGDD----L 618
Query: 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
+ +A +SNF D AV +A+ +W + + + V+L + G LVAV
Sbjct: 619 DTSA------IRRVSNF---DKAVKFSEASFTW----DPDLEATIQDVNLDIKPGQLVAV 665
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 702
+G VGSGKSSL++++LGEM HG I GS AYVPQ WI +GTI+DNILFG Y+ +
Sbjct: 666 VGTVGSGKSSLVSAMLGEMENVHGHITIQGSTAYVPQQSWIQNGTIKDNILFGSEYNEKK 725
Query: 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762
Y + LKAC L D+ ++ GGDMA IGEKG+NLSGGQ+ R++LARA Y +DIY+LDD LS
Sbjct: 726 YQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVSLARAAYQDADIYILDDPLS 785
Query: 763 AVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
AVDA V + I N ++GP+ L KTRI TH + + D +VV+ KG + GS DL
Sbjct: 786 AVDAHVGKHIF-NKVVGPNGLLAGKTRIFVTHGIHFLPQVDEIVVLGKGTILEKGSYRDL 844
Query: 821 --AVSLYSGFWST---------------------------------NEFDTSLHMQKQE- 844
+++ W T E SL M+++
Sbjct: 845 LDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPTMEEIPEDAASLAMRRENS 904
Query: 845 ------------------MRTNASSANKQILLQ-EKDVVSVSDDAQEIIEVEQRKEGRVE 885
++ + N +L + EK+V + Q++I+ E + G+V+
Sbjct: 905 LRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEV-----EGQKLIKKEFVETGKVK 959
Query: 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTSFYLVV 944
++Y Y + GW+ L I L L + G++LWLS W D+ + T S+S +
Sbjct: 960 FSIYLKYLQAVGWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDNLNGTNNSSSHRDMR 1019
Query: 945 LCIFC---MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
+ +F + L+ + A+ +H LLT I+ AP+ FFD TP GRI+NR
Sbjct: 1020 IGVFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAPMRFFDTTPTGRIVNR 1079
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
FS D+ +DD LP L + F G+ G V++ F ++++P +Y +Q FY +
Sbjct: 1080 FSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIIIPLSILYISVQVFYVA 1139
Query: 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121
TSR+LRRLDSV++SPIY+ F+ET+ G IRAF+ + F+A ++ + + Q+ +S +T+
Sbjct: 1140 TSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDINQKCVFSWITS 1199
Query: 1122 SLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLS 1181
+ WL++RL+L+ ++ F + + ++ R L T +VG LS A I L +
Sbjct: 1200 NRWLAIRLELVGNLVV-FCSALLLVIYRKTL-----TGDVVGFVLSNALNITQTLNWLVR 1253
Query: 1182 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYKPSLPAAL 1240
+E E +V++ER+ EY++V E P DWP G I+F N +RY+P L L
Sbjct: 1254 MTSEAETNIVAVERISEYINVENEAPWVTDKRPPADWPRHGEIQFNNYQVRYRPELDLVL 1313
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
I I+ G +VG+VGRTGAGKSS+ N LFR+ GGQI++DG+++ + + DLR R
Sbjct: 1314 KGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVASIGLHDLRERL 1373
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISF 1358
++PQ P LF GSLR NLDPF+ D ++W LE H++ V +GL + V E G +
Sbjct: 1374 TIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNL 1433
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1418
S+GQRQL+CL RA+L+ SK+L LDE TA VD +T S++Q I E TVITIAHR+ T
Sbjct: 1434 SIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHT 1493
Query: 1419 VLNMDEILILDHGHLPHCG 1437
+++ D+I++LD+G + G
Sbjct: 1494 IMDSDKIMVLDNGKIVEYG 1512
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1226 (35%), Positives = 695/1226 (56%), Gaps = 85/1226 (6%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIA 324
PS +RA+ + + ++ + +GF P LL+ LI+F+ + G++LA
Sbjct: 295 QPSFLRALVRTFTSSLLMSACFNLIQNLLGFVNPQLLSILIRFISDPTAPTWWGFLLAGL 354
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ L+S +++ QY + + L+LR++I+ +IY+K L + + + E + GE+ MSV
Sbjct: 355 MFLSSTMQTLILHQYYHCIFVMALRLRTAIIGVIYRKALVITNSVKRESTVGEMVNLMSV 414
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D R ++++ + WS P Q+ +A+Y L+ + + ++G+A+ +LLIP+N ++ +
Sbjct: 415 DAQRFMDVSPFINLLWSAPLQVILAIYFLWQILGPSALAGVAVIVLLIPLNGAVSMKMKT 474
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
K MK KD RI+ EIL I+ LK+Y WE F + R SE++ L YL A
Sbjct: 475 YQVKQMKFKDSRIKLMSEILNGIKVLKLYAWEPSFLEQVKGIRQSELQLLRKGAYLQAIS 534
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 562
F W TP L +L T G++ + LDA F L+LFN L PLN P +I+GL A
Sbjct: 535 TFIWICTPFLVTLITLGVYVYVDESNVLDAEKAFVSLSLFNILKIPLNMLPQLISGLTQA 594
Query: 563 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
+S++R+ FL +E + +E+ SP Y A+ + + T +W +
Sbjct: 595 SVSLKRIQDFLNQNELDPQCVERKTISPGY-------------AITIHNGTFTW----AQ 637
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ L+ +++ +PKG+LVAV+G VG GKSSL++++LGEM G + GS+AYVPQ
Sbjct: 638 DLPPTLHSLNIQIPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGVVSVKGSVAYVPQQA 697
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+++N+LFG+ +P+ Y + L+ C L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 698 WIQNCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPGGDQTEIGEKGINLSGGQRQR 757
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 799
++LARAVY ++I++LDD LSAVD+ VA+ I + ++GP + KTR+L TH + +
Sbjct: 758 VSLARAVYSDANIFLLDDPLSAVDSHVAKHIF-DQVIGPEGVLAGKTRVLVTHGISFLPQ 816
Query: 800 ADMVVVMDKGQVKWIG--------------------------------SSADLAVSLYSG 827
D ++V+ GQV +G +A+ V L
Sbjct: 817 TDFIIVLAGGQVSEMGHYSALLQHDGSFANFLRNYAPDEDQEDHEAALQNANEEVLLLED 876
Query: 828 FWSTNEFDTS-----LHMQKQEMRTNASSANKQIL------------LQEKDVVSVSDDA 870
ST+ T ++KQ MR +S +++ + L+++ +V+ + +
Sbjct: 877 TLSTHTDLTDNEPAIYEVRKQFMREMSSLSSEGEVQNRTMPKKHTNSLEKEALVTKTKET 936
Query: 871 QEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG 930
+I+ E + G V+L+VY +YAK G TL ICL A+ G ++WLS W +
Sbjct: 937 GALIKEEIAETGNVKLSVYWDYAKSMGLCTTLSICLLYGGQSAAAIGANVWLSAWSNDAE 996
Query: 931 SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFF 990
+ TS L V + L ++ AF+ G+++AA +H LL + +P FF
Sbjct: 997 EHGQQNKTSVRLGVYAALGILQGLLVMLSAFTMVVGAIQAARLLHEALLHNKIRSPQSFF 1056
Query: 991 DQTPGGRILNRFSSDLYMIDDSL-PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049
D TP GRILNRFS D+Y+ID+ L P IL +L + F + I V+++ +F +++L P
Sbjct: 1057 DTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFFTSISTIMVIVASTPLFMVVVL-PLA 1115
Query: 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVV 1109
+Y +Q FY +TSR+L+RL+S+SRSPI++ F+ET+ G+S IRA+ F V
Sbjct: 1116 VLYGFVQRFYVATSRQLKRLESISRSPIFSHFSETVTGTSVIRAYGRIQDFKVLSDTKVD 1175
Query: 1110 LYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA 1169
Q++SY + ++ WL + ++ + ++ F A AVIG R +L PGLVGL++SYA
Sbjct: 1176 NNQKSSYPYIASNRWLGVHVEFVGNCVVLFAALFAVIG-RNSL-----NPGLVGLSVSYA 1229
Query: 1170 APIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS-LSPD-WPFQGLIEFQN 1227
+ L + ++ E ++++ERV EY E +S +P+ WP +G++EF+N
Sbjct: 1230 LQVTMALNWMIRMISDLESNIIAVERVKEYSKTKTEAPWVVESNRAPEGWPTRGMVEFRN 1289
Query: 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1287
++RY+P L L ++ ++GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLN
Sbjct: 1290 YSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGKSSMTLCLFRILEAAEGEIVIDGLN 1349
Query: 1288 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAV 1345
+ + + DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V +
Sbjct: 1350 VAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSEEDIWRALELSHLNTFVSSQPA 1409
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
GL+ E G + SVGQRQL+CLARALL+ S+VL LDE TA +D +T ++Q I ++ +
Sbjct: 1410 GLDFQCAEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAIDLETDDLIQGTIRTQFE 1469
Query: 1406 GMTVITIAHRISTVLNMDEILILDHG 1431
TV+TIAHR++T+++ + +L+LD G
Sbjct: 1470 DCTVLTIAHRLNTIMDYNRVLVLDKG 1495
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/1220 (36%), Positives = 677/1220 (55%), Gaps = 98/1220 (8%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 344
LLK+VND F P LL LI F +L GY+ AI L ++++SF Y
Sbjct: 327 LLKLVNDIFTFVSPQLLKLLISFASDRDTYLWIGYLCAILLFTAALIQSFCLQCYFQLCF 386
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 404
KL +K+R++IM +Y+K L + R E++ GE MSVD + +++ N H WS
Sbjct: 387 KLGVKVRTAIMASVYKKALTLSNLARKEYTVGETVNLMSVDAQKLMDVTNFMHMLWSSVL 446
Query: 405 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 464
QI ++++ L+ ++ + ++G+ + +L+IP+N ++ K MK KD+R++ EIL
Sbjct: 447 QIVLSIFFLWRELGPSVLAGVGVMVLVIPINAILSTKSKTIQVKNMKNKDKRLKIMNEIL 506
Query: 465 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
+ I+ LK + WE F + R E+K+L L +F + TP L S+ TF ++
Sbjct: 507 SGIKILKYFAWEPSFRDQVQNLRKKELKNLLAFSQLQCVVIFVFQLTPVLVSVVTFSVYV 566
Query: 525 LMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLG-----CSE 577
L+ LDA FT + LFN L PL+ P +I+ ++ A +S RL ++LG S
Sbjct: 567 LVDSNNILDAQKAFTSITLFNILRFPLSMLPMMISSMLQASVSTERLEKYLGGDDLDTSA 626
Query: 578 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 637
+H+ NF D A+ +A+ +W E + + V+L + G
Sbjct: 627 IRHD---------------CNF---DKAMQFSEASFTW----EHDSEATVRDVNLDIMAG 664
Query: 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKN 697
LVAVIG VGSGKSSL++++LGEM HG I G+ AYVPQ WI +GTI+DNILFG
Sbjct: 665 QLVAVIGPVGSGKSSLISAMLGEMENVHGHITIKGTTAYVPQQSWIQNGTIKDNILFGTE 724
Query: 698 YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757
++ + Y + L+AC L D+ ++ GGD+A IGEKG+NLSGGQ+ R++LARA Y DIY+L
Sbjct: 725 FNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATYQNLDIYLL 784
Query: 758 DDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
DD LSAVDA V + I N ++GP+ L KTR+L TH++ + D +VV+ G + G
Sbjct: 785 DDPLSAVDAHVGKHIF-NKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNGTIVEKG 843
Query: 816 S-SADLA---------------------VSLYSGFWSTNEFDTSLHMQKQEMRTNASS-- 851
S SA LA +++ G ++ D L +E+ +A+S
Sbjct: 844 SYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDD-DYGLISSVEEIPEDAASIT 902
Query: 852 ----------------ANKQIL------LQEKDVVSVSDD-----AQEIIEVEQRKEGRV 884
+N + L L+ ++V S+ +D Q++I+ E + G+V
Sbjct: 903 MRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQKLIKKEFIETGKV 962
Query: 885 ELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTS---F 940
+ ++Y Y + G F I L+ ++ + G++LWLS W D+ + T Y S
Sbjct: 963 KFSIYLEYLQAIGLFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTDYPASQRDM 1022
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
+ V + + F AFG + A+ +H LL I+ AP+ FFD TP GRI+N
Sbjct: 1023 RVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTTPTGRIVN 1082
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYR 1060
RF+ D+ +DD+LP L + F+G++ V++ F ++++P IY +Q FY
Sbjct: 1083 RFAGDISTVDDTLPQSLRSWITCFLGIISTLVMICMATPVFTIIVIPLGIIYVSVQMFYV 1142
Query: 1061 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120
STSR+LRRLDSV+RSPIY+ F+ET++G IRAF+ + F+ + + Q+ +S +T
Sbjct: 1143 STSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWIT 1202
Query: 1121 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL 1180
++ WL++RL+L+ + F A M VI R L VG LS A I L +
Sbjct: 1203 SNRWLAIRLELVGNLTVFFSALMMVI-YRDTLSG-----DTVGFVLSNALNITQTLNWLV 1256
Query: 1181 SSFTETEKEMVSLERVLEYMDVPQE-ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1239
+E E +V++ER+ EY V E + PDWP +G I+F N +RY+P L
Sbjct: 1257 RMTSEIETNIVAVERITEYTKVENEAPWVTDKRPPPDWPSKGKIQFNNYQVRYRPELDLV 1316
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L I I ++G+VGRTGAGKSS+ N LFR+ GGQI++DG++I + + DLR +
Sbjct: 1317 LRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVDIASIGLHDLREK 1376
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGIS 1357
++PQ P LF GSLR NLDPF+ D +IW LE H+K V + +GL V E+G +
Sbjct: 1377 LTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLGLSHEVTEAGGN 1436
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S+GQRQL+CL RALL+ SK+L LDE TA VD +T +++Q I +E TVITIAHR+
Sbjct: 1437 LSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLH 1496
Query: 1418 TVLNMDEILILDHGHLPHCG 1437
T+++ D++++LD+G + CG
Sbjct: 1497 TIMDSDKVMVLDNGKIIECG 1516
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/1222 (35%), Positives = 681/1222 (55%), Gaps = 70/1222 (5%)
Query: 266 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 323
PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY
Sbjct: 311 EPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPKILELIINFVNDREAPDWQGYFYTA 369
Query: 324 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 382
L +++ L++ QY FH+ + ++++++++ +Y+K L + A R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVSGMRIKTAVVGAVYRKALLITNAARKSSTVGEIVNLM 428
Query: 383 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 442
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P+N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVILALYFLWLSLGPSVLAGVAVMILMVPLNAVMAMKT 488
Query: 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 502
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMSIRQEELKVLKKSAYLAA 548
Query: 503 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 560
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDERNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 561 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 620
A +S++RL FL ELE + I +G N ++ +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERRSIKSGEGN------SITVKNATFTW----A 654
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 655 RGEPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 714
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740
WI + ++R+NILFG Y ++AC L D+ ++ GD IGEKGVNLSGGQ+
Sbjct: 715 AWIQNDSLRENILFGHPLQENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 774
Query: 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 798
R++LARAVY SDIY+ DD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 775 RVSLARAVYSNSDIYLFDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 833
Query: 799 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD------------------ 835
D+++VM G++ +GS +L A + + ++ E D
Sbjct: 834 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFLRTYANAEQDLASEDDSVSGSGKESKPV 893
Query: 836 ---------TSLHMQKQEMRTNASSAN---KQILLQEKDVVSVSDDAQEIIEVEQRKEGR 883
H+Q+ +++ S + + + E ++ +++E ++ + G+
Sbjct: 894 ENGMLVTDTVGKHLQRHLSNSSSHSGDTSQQHSSIAELQKAGAKEETWKLMEADKAQTGQ 953
Query: 884 VELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYL 942
V+L+VY NY K G FIT + + S ++ WLS W D + T+ + +F L
Sbjct: 954 VQLSVYWNYMKAIGLFITFLSIFLFLCNHVSALASNYWLSLWTDDPPVVNGTQANRNFRL 1013
Query: 943 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 1002
V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++NRF
Sbjct: 1014 SVYGALGILQGAAIFGYSMAVSIGGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVNRF 1073
Query: 1003 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062
S +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY ++
Sbjct: 1074 SKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYVAS 1133
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122
SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A+
Sbjct: 1134 SRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1193
Query: 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1182
WL++RL+ + I+ F A AVI SR +L A GLVGL++SY+ I + L +
Sbjct: 1194 RWLAVRLECVGNCIVLFAALFAVI-SRHSLSA-----GLVGLSVSYSLQITAYLNWLVRM 1247
Query: 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLPAAL 1240
+E E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L L
Sbjct: 1248 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVL 1307
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
IN TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR +
Sbjct: 1308 KHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGVNIAKIGLHNLRFKI 1367
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1358
++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G +
Sbjct: 1368 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENL 1427
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1418
SVGQRQL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++T
Sbjct: 1428 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1487
Query: 1419 VLNMDEILILDHGHLPHCGCAA 1440
+++ +++LD G + CG +
Sbjct: 1488 IMDYTRVIVLDKGEVRECGAPS 1509
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
| >sp|O15438|MRP3_HUMAN Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/1228 (35%), Positives = 678/1228 (55%), Gaps = 86/1228 (7%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIA 324
PS ++A+ +G ++ K++ D + F P LL+ LI+F+ + G+++A
Sbjct: 296 KPSFLKALLATFGSSFLISACFKLIQDLLSFINPQLLSILIRFISNPMAPSWWGFLVAGL 355
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ L S+++S Y ++ +K R+ IM +IY+K L + + + + GEI MSV
Sbjct: 356 MFLCSMMQSLILQHYYHYIFVTGVKFRTGIMGVIYRKALVITNSVKRASTVGEIVNLMSV 415
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D R ++LA + WS P QI +A+Y L+ + + ++G+A +LLIP+N +A +
Sbjct: 416 DAQRFMDLAPFLNLLWSAPLQIILAIYFLWQNLGPSVLAGVAFMVLLIPLNGAVAVKMRA 475
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
K MK KD RI+ EIL I+ LK+Y WE F + R E++ L T YL
Sbjct: 476 FQVKQMKLKDSRIKLMSEILNGIKVLKLYAWEPSFLKQVEGIRQGELQLLRTAAYLHTTT 535
Query: 505 VFFWATTPTLFSLFTFGLFALM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 562
F W +P L +L T ++ + + LDA F ++LFN L PLN P +I+ L A
Sbjct: 536 TFTWMCSPFLVTLITLWVYVYVDPNNVLDAEKAFVSVSLFNILRLPLNMLPQLISNLTQA 595
Query: 563 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
+S++R+ +FL E + +E+ SP Y A+ + T +W +
Sbjct: 596 SVSLKRIQQFLSQEELDPQSVERKTISPGY-------------AITIHSGTFTW----AQ 638
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ L+ + + +PKG+LVAV+G VG GKSSL++++LGEM G +H GS+AYVPQ
Sbjct: 639 DLPPTLHSLDIQVPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGKVHMKGSVAYVPQQA 698
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+++N+LFGK +P+ Y +TL+AC L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 699 WIQNCTLQENVLFGKALNPKRYQQTLEACALLADLEMLPGGDQTEIGEKGINLSGGQRQR 758
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 799
++LARAVY +DI++LDD LSAVD+ VA+ I + I GP + KTR+L TH + +
Sbjct: 759 VSLARAVYSDADIFLLDDPLSAVDSHVAKHIFDHVI-GPEGVLAGKTRVLVTHGISFLPQ 817
Query: 800 ADMVVVMDKGQVKWIGS------------------SADLAVSLYSGFWS----------- 830
D ++V+ GQV +G + D W+
Sbjct: 818 TDFIIVLADGQVSEMGPYPALLQRNGSFANFLCNYAPDEDQGHLEDSWTALEGAEDKEAL 877
Query: 831 ------------TNEFDTSLHMQKQEMRT-NASSAN----------KQILLQEKDVVSVS 867
T+ + +QKQ MR +A S++ + + EK V+ +
Sbjct: 878 LIEDTLSNHTDLTDNDPVTYVVQKQFMRQLSALSSDGEGQGRPVPRRHLGPSEKVQVTEA 937
Query: 868 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 927
+ + E+ G VEL+V+ +YAK G TL ICL + A+ G ++WLS W +
Sbjct: 938 KADGALTQEEKAAIGTVELSVFWDYAKAVGLCTTLAICLLYVGQSAAAIGANVWLSAWTN 997
Query: 928 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987
+ + +TS L V + FL ++ A + A G ++AA +H LL + +P
Sbjct: 998 DAMADSRQNNTSLRLGVYAALGILQGFLVMLAAMAMAAGGIQAARVLHQALLHNKIRSPQ 1057
Query: 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047
FFD TP GRILN FS D+Y++D+ L ++ +LL +F + VV+ F ++++P
Sbjct: 1058 SFFDTTPSGRILNCFSKDIYVVDEVLAPVILMLLNSFFNAISTLVVIMASTPLFTVVILP 1117
Query: 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107
+Y+ +Q FY +TSR+L+RL+SVSRSPIY+ F+ET+ G+S IRA+ F
Sbjct: 1118 LAVLYTLVQRFYAATSRQLKRLESVSRSPIYSHFSETVTGASVIRAYNRSRDFEIISDTK 1177
Query: 1108 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1167
V QR+ Y + ++ WLS+ ++ + ++ F A AVIG R +L PGLVGL++S
Sbjct: 1178 VDANQRSCYPYIISNRWLSIGVEFVGNCVVLFAALFAVIG-RSSL-----NPGLVGLSVS 1231
Query: 1168 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEF 1225
Y+ + L + ++ E +V++ERV EY E + P WP +G +EF
Sbjct: 1232 YSLQVTFALNWMIRMMSDLESNIVAVERVKEYSKTETEAPWVVEGSRPPEGWPPRGEVEF 1291
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
+N ++RY+P L L D++ + GG +VGIVGRTGAGKSS+ LFR+ G+I +DG
Sbjct: 1292 RNYSVRYRPGLDLVLRDLSLHVHGGEKVGIVGRTGAGKSSMTLCLFRILEAAKGEIRIDG 1351
Query: 1286 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--E 1343
LN+ + + DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V +
Sbjct: 1352 LNVADIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGSYSEEDIWWALELSHLHTFVSSQ 1411
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
GL+ E G + SVGQRQL+CLARALL+ S++L LDE TA +D +T +++Q I ++
Sbjct: 1412 PAGLDFQCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQ 1471
Query: 1404 CKGMTVITIAHRISTVLNMDEILILDHG 1431
TV+TIAHR++T+++ +L+LD G
Sbjct: 1472 FDTCTVLTIAHRLNTIMDYTRVLVLDKG 1499
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Homo sapiens (taxid: 9606) |
| >sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/1225 (35%), Positives = 688/1225 (56%), Gaps = 72/1225 (5%)
Query: 266 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 323
+PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY+
Sbjct: 311 DPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPEILELIINFVNDREAPDWQGYLYTA 369
Query: 324 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 382
L +++ L++ QY FH+ + ++++++++ +Y+K L + + R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVTGMRIKTAVVGAVYRKALVITNSARKSSTVGEIVNLM 428
Query: 383 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 442
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVTLALYFLWLNLGPSVLAGVAVMILMVPFNAVMAMKT 488
Query: 443 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 502
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMNIRQEELKVLKKSAYLAA 548
Query: 503 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 560
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDEKNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 561 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 620
A +S++RL FL ELE + I +G NS + +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERWSIKDG-GGMNS----ITVKNATFTW----A 655
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680
++ LN ++ +P G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 656 RDEPPTLNGITFAIPDGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 715
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740
WI + ++R+NILFG+ Y ++AC L D+ ++ GD+ IGEKGVNLSGGQ+
Sbjct: 716 AWIQNDSLRENILFGRPLQEHCYKAVMEACALLPDLEILPSGDLTEIGEKGVNLSGGQKQ 775
Query: 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 798
R++LARAVY SDIY+LDD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 776 RVSLARAVYCNSDIYLLDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 834
Query: 799 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD----------------TS 837
D+++VM G++ +GS +L A + + ++ E D S
Sbjct: 835 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFVRTYANTEQDLASEDDSKNGVSGLGKES 894
Query: 838 LHMQKQEMRTNA-----------SSANKQILLQEKDVVS------VSDDAQEIIEVEQRK 880
++ + T+A SS++ + Q+ + V ++ +++E ++ +
Sbjct: 895 KPVENGILVTDAVGKPLQRHLSNSSSHSVVTNQQHSSTAELQKSGVKEETWKLMEADKAQ 954
Query: 881 EGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTS 939
G+V+L+VY NY K G I+ + + S ++ WLS W D + + T+ + +
Sbjct: 955 TGQVKLSVYWNYMKAIGLCISFLSIFLFLCNHVSALASNYWLSLWTDDRPAVNGTQENRN 1014
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
F L V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++
Sbjct: 1015 FRLSVYGALGILQGVAVFGYSMAVSIGGIFASRRLHLDLLQNVLRSPMSFFERTPSGNLV 1074
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1059
NRFS +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY
Sbjct: 1075 NRFSKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFY 1134
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL 1119
++SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y +
Sbjct: 1135 VASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSI 1194
Query: 1120 TASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
A+ WL++RL+ + I+ F A AVI SR +L A GLVGL++SY+ I + L
Sbjct: 1195 VANRWLAVRLECVGNCIVLFAALFAVI-SRHSLSA-----GLVGLSVSYSLQITAYLNWL 1248
Query: 1180 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLP 1237
+ +E E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L
Sbjct: 1249 VRMSSEMETNIVAVERLKEYSETEKEASWQIQETAPPSTWPHSGRVEFRDYCLRYREDLD 1308
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
L IN TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR
Sbjct: 1309 LVLKHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHNLR 1368
Query: 1298 GRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESG 1355
+ ++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G
Sbjct: 1369 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGG 1428
Query: 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1415
+ SVGQRQL+CLARALL+ +K+L LDE TA VD +T ++Q+ I ++ + TV+TIAHR
Sbjct: 1429 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDSTVLTIAHR 1488
Query: 1416 ISTVLNMDEILILDHGHLPHCGCAA 1440
++T+++ +++LD G + CG +
Sbjct: 1489 LNTIMDYTRVIVLDKGEIRECGAPS 1513
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Rattus norvegicus (taxid: 10116) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1233 (35%), Positives = 674/1233 (54%), Gaps = 88/1233 (7%)
Query: 258 AQRSCNCTNPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQQGSG-H 315
+QRS + SL + + +G PY + L K +D + F GP +L LI F+ S +
Sbjct: 304 SQRS---SEASLSKVLYKTFG-PYFLMSFLFKAAHDLLMFTGPEILKLLINFVNNKSAPN 359
Query: 316 LDGYVLAIALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFS 374
GY L + + L++ QY FH+ + ++L+++I+ +IY+K L + + R +
Sbjct: 360 WQGYFYTGLLFVCACLQTLILHQY-FHICFVTGMRLKTAIVGVIYRKALVITNSARKTST 418
Query: 375 DGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPV 434
GEI MSVD R ++LA + WS P Q+ +ALYLL+ + + ++G+A+ ILL+P+
Sbjct: 419 VGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPSVLAGVAVMILLVPI 478
Query: 435 NKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHL 494
N +A MK KD RI+ EIL I+ LK+Y WE F +++ R E+K L
Sbjct: 479 NAVMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREKVLEIRQKELKVL 538
Query: 495 STRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSF 552
YL A F W P L +L TF ++ + LDA F LALFN L PLN
Sbjct: 539 KKSAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLALFNILRFPLNIL 598
Query: 553 PWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDAT 612
P VI+ +++A +S++RL FL E + S I ++N + ++++++AT
Sbjct: 599 PMVISSIVEASVSLKRLRVFLSHEELDPD--------SIIRGPITN---AEGSIVVKNAT 647
Query: 613 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
SW + LN ++ +P+GSL+AV+G+VG GKSSLL+++LGEM G + G
Sbjct: 648 FSWSKTDPPS----LNSINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDKKEGYVVVKG 703
Query: 673 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
SIAYVPQ WI + T+ DNI+FG+ + Y ++AC L D+ ++ GD IGEKGV
Sbjct: 704 SIAYVPQQAWIQNATLEDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGV 763
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILC 790
NLSGGQ+ R++LARAVY +D Y+ DD LSAVDA V + I I GP + KTR+L
Sbjct: 764 NLSGGQKQRVSLARAVYCNADTYLFDDPLSAVDAHVGKHIFEKVI-GPKGILKNKTRVLV 822
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL------------------------------ 820
TH V + D ++VM G++ +GS +L
Sbjct: 823 THAVNYLPQMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMESSDASSPS 882
Query: 821 ---AVSLYSGFWSTNEFDTSLHMQKQEMRT----------NASSANKQILLQEKDVVSVS 867
+ +G + +H Q T +S+A Q L EK+
Sbjct: 883 GKEGKPVENGVLVNDATGKLMHRQLSNSSTYSRETGKSQHQSSTAELQKPLAEKN----- 937
Query: 868 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 927
+ ++ E + K GRV+ TVY Y K G +I+ + + + ++ WLS W D
Sbjct: 938 --SWKLTEADTAKTGRVKATVYWEYMKAIGLYISFLSVFLFMCNHIASLASNYWLSLWTD 995
Query: 928 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987
+ T+ T+ L V + + + + G + A+ +H LL ++ +P+
Sbjct: 996 DPVVNGTQQYTNVRLGVYGALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPM 1055
Query: 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047
FF++TP G +++RFS ++ ID ++P I+ + + + ++G +++ +++ P
Sbjct: 1056 SFFERTPSGNLVSRFSKEIDTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPP 1115
Query: 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107
+Y +Q FY +TSR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ + F+ +
Sbjct: 1116 LGLVYLLVQRFYVATSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMK 1175
Query: 1108 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1167
V Q+ Y + A+ WL++RL+ + I+ F A AVI +R L +PGL+GL++S
Sbjct: 1176 VDENQKAYYPSIVANRWLAVRLEFVGNCIVLFAALFAVI-ARNKL-----SPGLIGLSVS 1229
Query: 1168 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEF 1225
Y+ I + L + ++ E +V++ERV EY ++ +E + +P WP +G +EF
Sbjct: 1230 YSLQITAYLNWLVRMTSDLETNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEF 1289
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
+ +RY+ L L +IN TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DG
Sbjct: 1290 RGFGLRYREDLDLVLKNINITINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDG 1349
Query: 1286 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV 1345
+NI + DLR + ++PQ P LF GSLR NLDPF + D IW LE H+K V ++
Sbjct: 1350 INIAKIGLHDLRFKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSL 1409
Query: 1346 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
L E G + SVGQRQL+CLARALL+ SK+L LDE TA VD +T +++Q+ I S+
Sbjct: 1410 PDKLNHECSEGGENLSVGQRQLVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQ 1469
Query: 1404 CKGMTVITIAHRISTVLNMDEILILDHGHLPHC 1436
+ TV+TIAHR++T+++ +L+LD G + C
Sbjct: 1470 FEECTVLTIAHRLNTIMDYTRVLVLDRGEVVEC 1502
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1445 | ||||||
| 358346459 | 1539 | ABC transporter C family member [Medicag | 0.990 | 0.929 | 0.667 | 0.0 | |
| 255543321 | 1395 | multidrug resistance-associated protein, | 0.892 | 0.924 | 0.761 | 0.0 | |
| 356547472 | 1384 | PREDICTED: ABC transporter C family memb | 0.938 | 0.979 | 0.702 | 0.0 | |
| 225443168 | 1305 | PREDICTED: ABC transporter C family memb | 0.865 | 0.958 | 0.770 | 0.0 | |
| 156556172 | 1457 | Multidrug Resistance associated Protein | 0.988 | 0.980 | 0.673 | 0.0 | |
| 334184186 | 1404 | multidrug resistance-associated protein | 0.942 | 0.970 | 0.648 | 0.0 | |
| 298286923 | 1410 | RecName: Full=ABC transporter C family m | 0.946 | 0.969 | 0.648 | 0.0 | |
| 297831764 | 1193 | ATMRP11 [Arabidopsis lyrata subsp. lyrat | 0.810 | 0.981 | 0.699 | 0.0 | |
| 298204674 | 1205 | unnamed protein product [Vitis vinifera] | 0.728 | 0.873 | 0.744 | 0.0 | |
| 5001458 | 1146 | putative ABC transporter [Arabidopsis th | 0.744 | 0.938 | 0.704 | 0.0 |
| >gi|358346459|ref|XP_003637285.1| ABC transporter C family member [Medicago truncatula] gi|355503220|gb|AES84423.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2013 bits (5214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1006/1508 (66%), Positives = 1189/1508 (78%), Gaps = 77/1508 (5%)
Query: 4 ICPNSPFVWDG--STFSKCFDDMIL----DFATNMVTIFIILIIGITQR-----SPRQNQ 52
ICPNSP V + ++L FA N+VTI +IL++GI Q+ + R +
Sbjct: 13 ICPNSPSVPFKIIKVLYEFHISLVLVYFTGFAVNVVTIAMILVLGIKQKISGRGTQRSDA 72
Query: 53 RINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLS 112
+++L+EK L+ +P +GAC S ++++ LLK++ G FV YH WL SCSE VW I+L +
Sbjct: 73 QMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCSELLVWANIILFT 132
Query: 113 RCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINI 172
+CA HC+ +R+LCFWWI+ P++GI H + F S EV C+ E +VL+++ FG+ IN+
Sbjct: 133 KCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVVLMNLSFGVVINV 192
Query: 173 IRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLD 232
IR+KR SS+ S +E+ LLS GD+EE N D NN ++WD M FK I VMN+GV+KQLD
Sbjct: 193 IRLKRLSSKSSLLEDPLLSNGGDLEEGGNHDLENNCNFWDFMTFKFISPVMNQGVLKQLD 252
Query: 233 FEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVND 292
+DLL L DM PS CH +L+ W+AQ S N NPSL A+C AYG+PY+CLGLLKV+ND
Sbjct: 253 SDDLLPLLPDMGPSFCHDIILNSWRAQVSNNSLNPSLFSALCNAYGWPYLCLGLLKVIND 312
Query: 293 SIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352
IGFAGPLLLNKLIKFLQQGS DGY+LA++LGLTSI+KSF DTQY+F LSKLKLKLRS
Sbjct: 313 GIGFAGPLLLNKLIKFLQQGSASWDGYLLALSLGLTSIIKSFLDTQYTFRLSKLKLKLRS 372
Query: 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL 412
SIMT+IY+KCLYV LAERS+F++GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYL
Sbjct: 373 SIMTLIYEKCLYVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYL 432
Query: 413 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKM 472
LYTQVKFAFVSGLAI ILLIPVNKWI+ LIA ATE+MMK+KDERIRRTGE+LT+IRTLKM
Sbjct: 433 LYTQVKFAFVSGLAIAILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKM 492
Query: 473 YGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDA 532
YGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP+LFSL TFGLFALMGHQLDA
Sbjct: 493 YGWELLFSSWLMATRSLEVKHLATRKYLDAWCVFFWATTPSLFSLSTFGLFALMGHQLDA 552
Query: 533 AMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYI 592
A VFTC+ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL C E++ E+ + NS
Sbjct: 553 ATVFTCIALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHRREVGE--NSSCSS 610
Query: 593 SNGLSNFNS-KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651
S +S +D+AV +QDA CSW +EE +N+VLN V+L L KGS VAVIGEVGSGKS
Sbjct: 611 SFLSKQPDSLQDLAVFIQDACCSWSSGDEEAKNLVLNHVTLSLSKGSFVAVIGEVGSGKS 670
Query: 652 SLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
SL+ SILGEM L HGSI++ GS+AYVPQVPW++SGT+RDNILFGK+Y+P+ Y++T+ AC
Sbjct: 671 SLIYSILGEMRLDHGSIYSHGSVAYVPQVPWVISGTVRDNILFGKSYNPERYADTINACA 730
Query: 712 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
LDVDIS MVGGDMAYIGEKGVNLSGGQRARLALAR +YH SD+ MLDD+LSAVD QVA+W
Sbjct: 731 LDVDISSMVGGDMAYIGEKGVNLSGGQRARLALARVLYHDSDVIMLDDILSAVDVQVAQW 790
Query: 772 ILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 831
IL NAI+GP + KTR+LCTHN+QAIS+ADM +V+DKG VKW+G S+D SLY+ F
Sbjct: 791 ILHNAILGPLLKGKTRLLCTHNIQAISSADMTIVLDKGCVKWMGISSDFPTSLYTEFSPL 850
Query: 832 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 891
NE D++ H +Q N+S + +Q L ++ V+ + +++IEVE RKEG+VEL VYKN
Sbjct: 851 NEMDSTPHNHQQSCSINSSISEEQS-LPDRIVMDTLEGEEDVIEVELRKEGKVELGVYKN 909
Query: 892 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCM 950
YA F+GWFI ++ICLSA+LMQASRN NDLWLSYWVDTT QT YS SFYL +LC+FC+
Sbjct: 910 YAAFTGWFIAVIICLSALLMQASRNANDLWLSYWVDTTTEDGQTSYSMSFYLAILCLFCI 969
Query: 951 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN-------RFS 1003
NS TLVRAFSFAFG L+AA KVHN LL+K++NAPV FFDQTPGGRILN R S
Sbjct: 970 MNSIFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLEYDVFRLS 1029
Query: 1004 SDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQ------------------VFFLLLL 1045
SDLY IDDSLPFILNILLANFVGLLGIA++LSYVQ VFFL+LL
Sbjct: 1030 SDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVFMIFLSFFFLCTAILKFVFFLVLL 1089
Query: 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1105
+PFW+IYS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFKSED+F +KF
Sbjct: 1090 LPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFSKFT 1149
Query: 1106 EHVVLYQRTSYSELTASLWLSLRL-----------------------------------Q 1130
+H+ LYQ+TSY+E+ ASLWLSLRL Q
Sbjct: 1150 DHITLYQKTSYTEIVASLWLSLRLQVSLHFAKLVVRYYIRFELTKYGISTVLLLIMTFFQ 1209
Query: 1131 LLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEM 1190
LLAAFIISFIA MAV GS G+LP F TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEM
Sbjct: 1210 LLAAFIISFIALMAVAGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEM 1269
Query: 1191 VSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGG 1250
VS+ER L+YMD+PQEE G Q L+PDWP QG+IEFQ+VT++Y PSLPAAL +I+F IEGG
Sbjct: 1270 VSIERALQYMDIPQEEQAGCQYLNPDWPNQGVIEFQHVTLKYMPSLPAALCNISFKIEGG 1329
Query: 1251 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1310
TQVGI+GRTGAGKSS+L ALFRLTPIC G I VDG++I N PVR+LR A+VPQSPFLF
Sbjct: 1330 TQVGIIGRTGAGKSSVLTALFRLTPICAGSITVDGMDIQNIPVRELRTHLAIVPQSPFLF 1389
Query: 1311 EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLA 1369
EGSLRDNLDPF NDD KIW LEKCHVKEEVEA GL VKE G+SFSVGQRQL+CLA
Sbjct: 1390 EGSLRDNLDPFKTNDDSKIWDALEKCHVKEEVEAAGGLNVLVKEGGMSFSVGQRQLLCLA 1449
Query: 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1429
RALLKSSKVLCLDECTA+VD QTAS+LQ+ ISSECKGMTVITIAHRISTV+N+D ILILD
Sbjct: 1450 RALLKSSKVLCLDECTASVDIQTASLLQSTISSECKGMTVITIAHRISTVINLDNILILD 1509
Query: 1430 HGHLPHCG 1437
HG+L G
Sbjct: 1510 HGNLAEQG 1517
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543321|ref|XP_002512723.1| multidrug resistance-associated protein, putative [Ricinus communis] gi|223547734|gb|EEF49226.1| multidrug resistance-associated protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2002 bits (5187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1294 (76%), Positives = 1121/1294 (86%), Gaps = 5/1294 (0%)
Query: 149 EVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQ 208
+VL+CLKE ++LLD++F ISINIIR++ AS + SSIE+ LLS D D+E+ DSGN Q
Sbjct: 88 QVLECLKESSVILLDVLFSISINIIRIRAASPKNSSIEDPLLSADIDIEQAYPVDSGNIQ 147
Query: 209 SYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPS 268
S W+LM FKSI VM RG+IKQLDFEDLLGLP DM+P +CH +L CWQAQ++ +NP
Sbjct: 148 SCWNLMTFKSITPVMKRGIIKQLDFEDLLGLPDDMEPLSCHDRLSCCWQAQQTS--SNPL 205
Query: 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLT 328
L++AICCAYG+PY +GLLKV ND IGFAGPLLLNKLI+FLQ+GS H DGY+LA++LGLT
Sbjct: 206 LLKAICCAYGWPYFRIGLLKVFNDCIGFAGPLLLNKLIRFLQRGSAHWDGYLLALSLGLT 265
Query: 329 SILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDR 388
S+LKSF DTQYSFHL+KLKLKLR+SIMT+IYQKCL V LAERS+FS+GEIQTFMSVD DR
Sbjct: 266 SVLKSFLDTQYSFHLAKLKLKLRASIMTVIYQKCLCVTLAERSKFSEGEIQTFMSVDADR 325
Query: 389 TVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEK 448
TVNL NSFHD WSLP QIGVALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEK
Sbjct: 326 TVNLCNSFHDVWSLPLQIGVALYLLYTQVKFAFLSGLAITILLIPVNKWISELIASATEK 385
Query: 449 MMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508
MMKQKDERIR+TGEILT+IRTLKMYGWE +FSS LM+TRS+EVKHL+TRKYLDAWCVFFW
Sbjct: 386 MMKQKDERIRKTGEILTYIRTLKMYGWEHLFSSRLMETRSTEVKHLATRKYLDAWCVFFW 445
Query: 509 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 568
ATTPTLFSLFTFGLF LMGHQL+AA VFTCLALFN+LISPLNSFPWVINGLIDAFIS RR
Sbjct: 446 ATTPTLFSLFTFGLFTLMGHQLEAATVFTCLALFNNLISPLNSFPWVINGLIDAFISTRR 505
Query: 569 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 628
L++FLGC E KH+LEQ S S N SNF S DMAV+M D C+W +E++QN+VLN
Sbjct: 506 LSKFLGCPENKHKLEQRTESLS--PNYQSNFVSDDMAVMMHDVCCAWSSGDEQQQNLVLN 563
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTI 688
V++ LPKGS +A++GEVGSGKSSLL +ILGEM GS+H+SGS AYVPQVPWILSGT+
Sbjct: 564 NVTVTLPKGSFIAIVGEVGSGKSSLLGAILGEMRFIRGSVHSSGSRAYVPQVPWILSGTV 623
Query: 689 RDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748
R+NILFGKNYD + Y +T+KAC LDVDIS+M GGDMAYIGEKGVNLSGGQRAR+ALARA+
Sbjct: 624 RENILFGKNYDSERYLDTIKACALDVDISMMAGGDMAYIGEKGVNLSGGQRARIALARAI 683
Query: 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808
Y GSD+YMLDDVLSAVDA+VAR IL NAI+GP + QKTR+LCTHNVQAIS+AD +VVM++
Sbjct: 684 YQGSDVYMLDDVLSAVDAEVARCILQNAILGPLLDQKTRVLCTHNVQAISSADRIVVMER 743
Query: 809 GQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD 868
G VKW+G+S DLAVS YS F NEFDT ++Q Q +R N S+ + + +K+ + VS+
Sbjct: 744 GHVKWVGNSTDLAVSSYSAFSLQNEFDTLSYVQGQGLRINTSTESIKSPSVDKESICVSE 803
Query: 869 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 928
+AQEI EVE RK GRVEL VYKNY FSG FI +VI LSAILMQASRNGNDLWLSYWVDT
Sbjct: 804 EAQEIFEVELRKAGRVELAVYKNYVAFSGCFIIVVIGLSAILMQASRNGNDLWLSYWVDT 863
Query: 929 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 988
TGSS +STSFYL VLCIFC+ NS LTLVRAFSFAFG LRAA++VHNTLL K+++AP+
Sbjct: 864 TGSSHGGFSTSFYLAVLCIFCIVNSSLTLVRAFSFAFGGLRAAIQVHNTLLKKLIDAPIQ 923
Query: 989 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1048
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGIA++LSYVQV FLLLL+PF
Sbjct: 924 FFDQTPAGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVAFLLLLLPF 983
Query: 1049 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1108
WFIYSKLQFFYRSTSRELRRLDSVSRSPIYA+FTETL+G+STIRAFKSED F+AKF EHV
Sbjct: 984 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYATFTETLDGTSTIRAFKSEDCFLAKFTEHV 1043
Query: 1109 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1168
LYQRTSYSE ASLWLSLRLQL+AAFIISF+A MAV+GSRG LP + TPGLVGLALSY
Sbjct: 1044 GLYQRTSYSETIASLWLSLRLQLIAAFIISFVAVMAVVGSRGYLPISSGTPGLVGLALSY 1103
Query: 1169 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1228
AAPIVSLLG+FL+SFTETEKEMVS+ER L+YMD+ QEEL G QSL PDWPFQGLIEFQNV
Sbjct: 1104 AAPIVSLLGSFLTSFTETEKEMVSVERALQYMDISQEELEGSQSLGPDWPFQGLIEFQNV 1163
Query: 1229 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288
TMRYKPSLP AL + FT+ GGTQVGIVGRTGAGKSSILNALFRL+PI GG ILVDGLNI
Sbjct: 1164 TMRYKPSLPPALDGVTFTVAGGTQVGIVGRTGAGKSSILNALFRLSPISGGCILVDGLNI 1223
Query: 1289 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGL 1347
I+ PVRDLR F+VVPQ+PFLFEGSLRDNLDP + DLKIWS LE+CH+KEEVE A GL
Sbjct: 1224 IDVPVRDLRAHFSVVPQTPFLFEGSLRDNLDPLQTSSDLKIWSTLEQCHIKEEVEMAGGL 1283
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
+ VK SG SFSVGQRQL+CLARALLKSS+VLCLDECTANVD QTASILQNAIS+EC+GM
Sbjct: 1284 DALVKGSGSSFSVGQRQLLCLARALLKSSRVLCLDECTANVDTQTASILQNAISTECEGM 1343
Query: 1408 TVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441
TVITIAHRISTV+NMD IL+LD G++ G A
Sbjct: 1344 TVITIAHRISTVMNMDHILVLDRGNVIEQGNPQA 1377
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547472|ref|XP_003542136.1| PREDICTED: ABC transporter C family member 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1982 bits (5136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 989/1407 (70%), Positives = 1155/1407 (82%), Gaps = 51/1407 (3%)
Query: 37 IILIIGITQRSPR----QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSY 92
+I+++G Q+ R + ++ L EK L+++P VGACLS VD+I L K+ + FV Y
Sbjct: 1 MIVVLGFNQKIGRGFRLSDSQMTLPEKFVLNLIPAVGACLSIVDLIFLWKKDHNSHFVGY 60
Query: 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLK 152
H+W +SCSE +W +
Sbjct: 61 HKWFNSCSELILWVSV-------------------------------------------- 76
Query: 153 CLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWD 212
C+ E +VLL+I F I+IN+IR+K S + S +E+ LLS D+EE D GNN ++WD
Sbjct: 77 CIMESLVVLLNISFSIAINVIRIKIPSFKSSLLEDPLLSNGVDLEEGGYNDLGNNGNFWD 136
Query: 213 LMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRA 272
LM FK I VMN GVIKQLD EDLL LPTD+ PS+CH +LSCWQAQ S N +NPSL RA
Sbjct: 137 LMTFKFITPVMNHGVIKQLDPEDLLPLPTDIGPSSCHDVILSCWQAQLSNNDSNPSLFRA 196
Query: 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILK 332
+C AYG+PY+CLGLLKV+ND IGFAGPLLLNKLI+FLQQGS +LDGY+LA++LGLTSI+K
Sbjct: 197 LCSAYGWPYLCLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIK 256
Query: 333 SFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNL 392
SF DTQY+FHLSKLKLKLRSSIMT+IY+KCL V LAERS+F++GEIQTFMSVD DRTVNL
Sbjct: 257 SFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNL 316
Query: 393 ANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ 452
NSFHD WSLP QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWI+ LIA ATE+MMK+
Sbjct: 317 CNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISQLIARATEQMMKE 376
Query: 453 KDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512
KDERIRRTGE+LT+IRTLKMYGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP
Sbjct: 377 KDERIRRTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTP 436
Query: 513 TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRF 572
TLFSLFTFGLFALMGH+LDAAMVFTCLALFN+LISPLNSFPWVINGLIDA IS RRL+RF
Sbjct: 437 TLFSLFTFGLFALMGHELDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRF 496
Query: 573 LGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSL 632
L C E K ++ +SPS + + + + + V +QDA C+W + E+ N+VLN V+L
Sbjct: 497 LSCPERKFKVGDTNSSPSSFLSKQPD-SVQGLGVFIQDACCTWSSSEEQALNLVLNHVTL 555
Query: 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNI 692
+ +GS VAVIGEVGSGKSSLL SILGEM L GS++++ SIAYVPQVPWILSGT+RDNI
Sbjct: 556 SVSQGSFVAVIGEVGSGKSSLLYSILGEMQLARGSVYSNESIAYVPQVPWILSGTVRDNI 615
Query: 693 LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752
LFGK+YDP+ Y++TL+AC LDVD+S+MV GDMAYIGEKGVNLSGGQRARLALARA+YH S
Sbjct: 616 LFGKSYDPERYTDTLQACALDVDVSMMVRGDMAYIGEKGVNLSGGQRARLALARAMYHDS 675
Query: 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
D+ MLDDVLSAVD QVA+ IL NAI+GP M +KTR+LCTHN+QAIS+ADM+VVMDKG++K
Sbjct: 676 DVVMLDDVLSAVDVQVAQRILHNAILGPLMQRKTRLLCTHNIQAISSADMIVVMDKGRIK 735
Query: 813 WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQE 872
W+G+SAD +S Y+ F NE D++LH +Q TN SS +K+ L D+V V + A+E
Sbjct: 736 WMGNSADFPISSYTEFSPLNEIDSALHNHRQSCSTNLSSKSKEQSLPNSDIVHVLEGAEE 795
Query: 873 IIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG-S 931
I+EVE RKEG+VEL VYK+YA F+GWF+T++ICLSAILMQASRNGNDLWLS+WVDTT S
Sbjct: 796 IVEVELRKEGKVELGVYKSYAVFTGWFMTVIICLSAILMQASRNGNDLWLSFWVDTTTES 855
Query: 932 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 991
SQT+YS SFYL +LC+FC+ NS TLVRAFSFAFG L+AA KVHN LL K+VNAPV FFD
Sbjct: 856 SQTRYSVSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNKLLNKLVNAPVQFFD 915
Query: 992 QTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1051
QTPGGRILNR SSDLY IDDSLPFI+NILLANFVGLLGI ++L YVQVFFLLLL+PFW+I
Sbjct: 916 QTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGITIILCYVQVFFLLLLLPFWYI 975
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
YS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFK+ED+F AKF EH+ LY
Sbjct: 976 YSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKAEDFFFAKFIEHITLY 1035
Query: 1112 QRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAP 1171
Q+TSY+E+ ASLWLSLRLQLL AFI+SFIA MAV+GS G+LP F TPGLVGLALSYAAP
Sbjct: 1036 QKTSYTEIVASLWLSLRLQLLGAFIVSFIAVMAVVGSHGSLPINFGTPGLVGLALSYAAP 1095
Query: 1172 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1231
IVSLLG+FLSSFTETEKEMVS+ER L+YMD+PQEE G LSPDWP QG+IEFQ+VT++
Sbjct: 1096 IVSLLGSFLSSFTETEKEMVSVERALQYMDIPQEEQTGCLYLSPDWPNQGVIEFQSVTLK 1155
Query: 1232 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1291
Y PSLPAAL +++F I GGTQVGI+GRTGAGKSS+LNALFRLTPIC G I +DG++I N
Sbjct: 1156 YMPSLPAALCNLSFRIVGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSITIDGVDIKNI 1215
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1350
PVR+LR A+VPQSPFLFEGSLRDNLDP MNDDLKIW+VLEKCHVKEEVEA GL+
Sbjct: 1216 PVRELRTHLAIVPQSPFLFEGSLRDNLDPLKMNDDLKIWNVLEKCHVKEEVEAAGGLDVL 1275
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1410
VKE+G+SFSVGQRQL+CLARALLKSSKVLCLDECTANVD QTAS+LQN ISSECKGMTVI
Sbjct: 1276 VKEAGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQNTISSECKGMTVI 1335
Query: 1411 TIAHRISTVLNMDEILILDHGHLPHCG 1437
TIAHRISTV+NMD ILILDHG L G
Sbjct: 1336 TIAHRISTVINMDSILILDHGKLAEQG 1362
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443168|ref|XP_002264313.1| PREDICTED: ABC transporter C family member 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1947 bits (5043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 972/1262 (77%), Positives = 1088/1262 (86%), Gaps = 11/1262 (0%)
Query: 186 EESLLSVDGDVEEDCNTDS------GNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGL 239
+E L S ++E + N D+ G QSYW L+ FK+I SVMN GV+KQLDFEDLL L
Sbjct: 23 KELLFSKTYNLEVEANMDTLTGQLKGKTQSYWHLLTFKAITSVMNHGVVKQLDFEDLLQL 82
Query: 240 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 299
P DMDPS+CH+ LLSCW AQ+ NC+NPSL RAICCAYG+PY LGLLKVVND IGF GP
Sbjct: 83 PIDMDPSSCHATLLSCWHAQQRHNCSNPSLFRAICCAYGWPYFRLGLLKVVNDCIGFVGP 142
Query: 300 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359
+LLN LI+FLQQGSG+LDGY+LA+A+GL I KSF DTQY+FHLSKLKLKLRSSIMT+IY
Sbjct: 143 VLLNNLIRFLQQGSGNLDGYILAVAMGLIPIFKSFLDTQYTFHLSKLKLKLRSSIMTVIY 202
Query: 360 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKF 419
KCL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKF
Sbjct: 203 HKCLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKF 262
Query: 420 AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIF 479
AFVSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F
Sbjct: 263 AFVSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLF 322
Query: 480 SSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 539
SWLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCL
Sbjct: 323 MSWLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCL 382
Query: 540 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS- 597
ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S
Sbjct: 383 ALFNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQF 442
Query: 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI 657
NF +DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSI
Sbjct: 443 NFKLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSI 502
Query: 658 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717
L EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DIS
Sbjct: 503 LKEMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDIS 562
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
LMVGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI
Sbjct: 563 LMVGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAI 622
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837
+GP M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+GSS D +VS YS F S NEF S
Sbjct: 623 LGPLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVGSSTDFSVSSYSTFCSLNEFTVS 682
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SG
Sbjct: 683 -QVRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSG 741
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTT-GSSQTKYSTSFYLVVLCIFCMFNSFLT 956
WFIT+VICLSAILMQASRNGNDLWLSYWVDTT GSS T+YSTSFYLVVLCIFC+ NSFLT
Sbjct: 742 WFITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVVLCIFCVINSFLT 801
Query: 957 LVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016
LVRAFSFAFG LRAAV+VHNTLL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFI
Sbjct: 802 LVRAFSFAFGGLRAAVQVHNTLLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFI 861
Query: 1017 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSP 1076
LNILLAN VGLLGIA+VLSYVQV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSP
Sbjct: 862 LNILLANIVGLLGIAIVLSYVQVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSP 921
Query: 1077 IYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1136
I+ASFTETL+GSSTIRAFK ED F +F EHV LYQ+TSYSEL ASLWLSLRLQLLAA +
Sbjct: 922 IFASFTETLDGSSTIRAFKCEDLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALV 981
Query: 1137 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1196
ISF+A MAVIGSR +LP + TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERV
Sbjct: 982 ISFVAMMAVIGSRDSLPISLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERV 1041
Query: 1197 LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1256
L+YMD+PQEEL G QSLSP+WP +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+
Sbjct: 1042 LQYMDIPQEELNGCQSLSPNWPSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGII 1101
Query: 1257 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1316
GRTGAGKSSILNALFRLTPIC G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRD
Sbjct: 1102 GRTGAGKSSILNALFRLTPICKGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRD 1161
Query: 1317 NLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKS 1375
NLDPF ++DDLKIW LE+CHVKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKS
Sbjct: 1162 NLDPFRVSDDLKIWKTLERCHVKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKS 1221
Query: 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPH 1435
SKVLCLDECTAN+DAQT+S+LQNAI +EC+GMTVITIAHRISTVL+MD ILILD G L
Sbjct: 1222 SKVLCLDECTANIDAQTSSVLQNAILTECRGMTVITIAHRISTVLSMDNILILDRGILVE 1281
Query: 1436 CG 1437
G
Sbjct: 1282 QG 1283
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|156556172|emb|CAO94660.1| Multidrug Resistance associated Protein 1 [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 1923 bits (4982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 970/1441 (67%), Positives = 1169/1441 (81%), Gaps = 13/1441 (0%)
Query: 1 MDFICPNSPFVWDGSTFSKCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKV 60
+ ICP+SP+VW+G+ S+CF +++L F NM T+ +I+++G+T+RS R+++RI+L K+
Sbjct: 4 LKHICPDSPYVWNGNGVSRCFSNIVLGFGANMATLIVIVLVGVTRRSGRRSRRIHLSAKI 63
Query: 61 FLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHCL 120
L +P +GA +S ++++LL++ + G ++ E+L S F VW ++L+S C + +
Sbjct: 64 LLFTVPALGAFVSFFEIVVLLRKIVGGYPFAFQEYLFPGSLFGVWVTVLLVSICDYWFVI 123
Query: 121 FCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASS 180
FC+R+LC WWIIKP + I H V F+S E+L CL E L LD FGI INII+ K AS
Sbjct: 124 FCNRLLCLWWIIKPFLWIPHLQVVFTSQELLPCLGESFLAFLDFTFGILINIIKSKWASH 183
Query: 181 RRS--SIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLG 238
R S SIEE LL D + C G + W ++ FKSIDSVM GV +QLDF DLL
Sbjct: 184 RSSCDSIEEPLLPCKVDAKGHCGI-LGLANNLWRIITFKSIDSVMENGVKRQLDFNDLLQ 242
Query: 239 LPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAG 298
LP DMD S C++ L CW+AQ+ N +NPSL++A+CCAYG+PY +GLLKV+ND + F G
Sbjct: 243 LPEDMDSSCCYNLLQHCWEAQQRNNNSNPSLLKAVCCAYGWPYFRIGLLKVINDCLSFVG 302
Query: 299 PLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 358
P+LLNKLIKFLQQGS H DGY+ AI+LGL+S+LKSF DTQYSFHL+++KLKLRSSIMTI+
Sbjct: 303 PVLLNKLIKFLQQGSNHYDGYIFAISLGLSSVLKSFLDTQYSFHLARIKLKLRSSIMTIV 362
Query: 359 YQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVK 418
Y KCL VRLAERS+FS+GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYLLY QVK
Sbjct: 363 YCKCLSVRLAERSKFSEGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYVQVK 422
Query: 419 FAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQI 478
FAF+SG+AITILLIPVNKWIA LIA AT+ MM+QKDERIRRT E+LT+IRTLKMYGWE +
Sbjct: 423 FAFLSGIAITILLIPVNKWIAQLIAKATKSMMEQKDERIRRTAELLTYIRTLKMYGWELL 482
Query: 479 FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTC 538
F+SWLMKTRS EVKHLSTRKYLDAWCVFFWATTPTLFSL TFGL+ LMGHQLDAA VFTC
Sbjct: 483 FASWLMKTRSLEVKHLSTRKYLDAWCVFFWATTPTLFSLCTFGLYTLMGHQLDAATVFTC 542
Query: 539 LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLS 597
LALFN+LISPLNSFPWVINGLIDAFIS RL+ +L C E+K LE+ N P+ SN L
Sbjct: 543 LALFNNLISPLNSFPWVINGLIDAFISSGRLSNYLSCCEHKVALEKTGNYPTPSCSNNLE 602
Query: 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI 657
N MAV + DA C+W ++++E +++L++++L +PKG LVAV+GEVGSGKS+LLN I
Sbjct: 603 N-----MAVTICDACCTWSSSDKKEFDLLLHKITLQVPKGCLVAVVGEVGSGKSALLNLI 657
Query: 658 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717
L E+ L GS+ +GS+ YVPQVPWILSGTIRDNILFG ++P+ YS+ LKAC LD DIS
Sbjct: 658 LEEVRLVSGSLSLTGSVTYVPQVPWILSGTIRDNILFGTEFNPRRYSDVLKACALDFDIS 717
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
LM+GGDMA IGEKG+NLSGGQRARLALARA+Y GS+IYMLDDVLSAVDA VA IL+NAI
Sbjct: 718 LMMGGDMACIGEKGLNLSGGQRARLALARAIYCGSEIYMLDDVLSAVDAHVASSILNNAI 777
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837
+GP M Q+TRILCTHN+QAI AAD+VV MDKG+VKW+GS ++L VS Y S + + S
Sbjct: 778 LGPLMNQQTRILCTHNIQAIYAADVVVEMDKGRVKWVGSPSNLTVSSYLALPSIDNLNGS 837
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897
+ K+ +R+ +S + +QE+D +++ + QE IE E RKEG+VEL VYKNYA F+G
Sbjct: 838 SEVHKKVIRSAVASETIE-EVQEQDHLNLLEAVQETIEAETRKEGKVELIVYKNYAAFAG 896
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTL 957
WFIT+ C SAI MQASRNGNDLWLSYWVDTTGSSQ +ST+FYLV+LC+FC NS LTL
Sbjct: 897 WFITIATCFSAIFMQASRNGNDLWLSYWVDTTGSSQKNFSTTFYLVILCLFCFVNSSLTL 956
Query: 958 VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL 1017
VRAFSFA+G LRAA VH+ +L +++NA V F+DQTP GRILNRFSSDLY IDDSLPFIL
Sbjct: 957 VRAFSFAYGGLRAAKVVHDQMLNRLINATVSFYDQTPTGRILNRFSSDLYTIDDSLPFIL 1016
Query: 1018 NILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPI 1077
NILLANFVGLLGIA+VLSYVQV FLLLL+PFW+IYSK+QF+YRSTSRELRRLDSVSRSPI
Sbjct: 1017 NILLANFVGLLGIAIVLSYVQVLFLLLLLPFWYIYSKIQFYYRSTSRELRRLDSVSRSPI 1076
Query: 1078 YASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1137
YASFTETL+G+STIRAFKSED+F+ +F +H+ LYQRTSYSE+TASLWLSLRLQLLAAFI+
Sbjct: 1077 YASFTETLDGASTIRAFKSEDFFLFRFIQHITLYQRTSYSEVTASLWLSLRLQLLAAFIV 1136
Query: 1138 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVL 1197
SF+A MAVIG+ +LP TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL
Sbjct: 1137 SFVAVMAVIGAHKHLPINLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVL 1196
Query: 1198 EYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVG 1257
+YMD+PQEE+ + +WP G I+FQNVT+RY PSLPAALHD++FTI GGTQVG++G
Sbjct: 1197 QYMDIPQEEVG--MLIEHNWPSHGEIQFQNVTLRYMPSLPAALHDVSFTISGGTQVGVIG 1254
Query: 1258 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN 1317
RTGAGKSSILNALFRL I GG+ILVD ++I +R LR + AVVPQSPFLF+ SLR N
Sbjct: 1255 RTGAGKSSILNALFRLNSITGGRILVDDVDISIVSLRHLRSQLAVVPQSPFLFKASLRAN 1314
Query: 1318 LDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSS 1376
LDPF DD IW+VL+KCHVKEEVEA+ GL+ VKESG SFSVGQRQL+CLARALLKSS
Sbjct: 1315 LDPFKEKDDADIWNVLKKCHVKEEVEALGGLDIEVKESGTSFSVGQRQLLCLARALLKSS 1374
Query: 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHC 1436
KVLCLDECTAN+D QTAS LQNAI++EC+G TVITIAHRISTVLNMD ILILD G L
Sbjct: 1375 KVLCLDECTANIDTQTASKLQNAIANECRGTTVITIAHRISTVLNMDNILILDQGILVEQ 1434
Query: 1437 G 1437
G
Sbjct: 1435 G 1435
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184186|ref|NP_178811.7| multidrug resistance-associated protein 11 [Arabidopsis thaliana] gi|330251033|gb|AEC06127.1| multidrug resistance-associated protein 11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1800 bits (4662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1423 (64%), Positives = 1114/1423 (78%), Gaps = 61/1423 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQ 257
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CWQ
Sbjct: 191 R-----IEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCWQ 245
Query: 258 AQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD 317
Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 246 LQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK---------- 295
Query: 318 GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGE 377
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GE
Sbjct: 296 ---------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGE 340
Query: 378 IQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKW 437
IQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKW
Sbjct: 341 IQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKW 400
Query: 438 IANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTR 497
I+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TR
Sbjct: 401 ISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATR 460
Query: 498 KYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVIN 557
KYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVIN
Sbjct: 461 KYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVIN 520
Query: 558 GLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYC 617
GLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 521 GLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSS 569
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYV
Sbjct: 570 NVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYV 629
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
PQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGG
Sbjct: 630 PQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGG 689
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797
QRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QAI
Sbjct: 690 QRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAI 749
Query: 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQ 855
S ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 750 SCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ET 800
Query: 856 ILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASR 915
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SR
Sbjct: 801 LSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSR 860
Query: 916 NGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 975
NGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV VH
Sbjct: 861 NGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHVH 920
Query: 976 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLS 1035
N L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLS
Sbjct: 921 NALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLS 980
Query: 1036 YVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFK 1095
YVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFK
Sbjct: 981 YVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFK 1040
Query: 1096 SEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPAT 1155
SE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P +
Sbjct: 1041 SEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPIS 1100
Query: 1156 FSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP 1215
F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1101 FGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSD 1160
Query: 1216 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1275
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP
Sbjct: 1161 KWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTP 1220
Query: 1276 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+K
Sbjct: 1221 VCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDK 1280
Query: 1336 CHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
C VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS
Sbjct: 1281 CKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTAS 1340
Query: 1395 ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
+L N ISSECKG+TVITIAHRISTV+++D ILILD G L G
Sbjct: 1341 LLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQG 1383
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298286923|sp|Q9SKX0.3|AB13C_ARATH RecName: Full=ABC transporter C family member 13; Short=ABC transporter ABCC.13; Short=AtABCC13; AltName: Full=ATP-energized glutathione S-conjugate pump 11; AltName: Full=Glutathione S-conjugate-transporting ATPase 11; AltName: Full=Multidrug resistance-associated protein 11 | Back alignment and taxonomy information |
|---|
Score = 1799 bits (4659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1424 (64%), Positives = 1114/1424 (78%), Gaps = 57/1424 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDCNT-DSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 256
N S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 257 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 316
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 317 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 376
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 377 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 436
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 496
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 616
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 617 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 676
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 677 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 854
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 855 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 914
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 915 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1034
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPA 1154
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1155 TFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1214
+F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1335 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G L G
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQG 1389
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831764|ref|XP_002883764.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] gi|297329604|gb|EFH60023.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1693 bits (4385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 850/1216 (69%), Positives = 991/1216 (81%), Gaps = 45/1216 (3%)
Query: 223 MNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYI 282
M G +KQL+FE+LL LP DMDP TC LL CWQ Q N + PSL+ +I YG+PY
Sbjct: 1 MKHGSVKQLEFENLLPLPPDMDPFTCCENLLRCWQLQECNNYSTPSLIWSISGVYGWPYF 60
Query: 283 CLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFH 342
LGLLKV ND IGFAGPL LN+LIK SF DTQY+F
Sbjct: 61 RLGLLKVFNDCIGFAGPLFLNRLIK-------------------------SFLDTQYTFR 95
Query: 343 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 402
LSK KLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VNL NS HD WSL
Sbjct: 96 LSKFKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVNLCNSLHDMWSL 155
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGE 462
P QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK KDERIR+TGE
Sbjct: 156 PLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMKLKDERIRKTGE 215
Query: 463 ILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGL 522
+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATTPTLFSL TFGL
Sbjct: 216 LLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATTPTLFSLCTFGL 275
Query: 523 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582
FALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++FL C E+ +
Sbjct: 276 FALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSKFLCCLEHSRDF 335
Query: 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
I +GL+ S+D+AV ++DA+ +W N EE+ N+ + VSL +PKGS VAV
Sbjct: 336 S--------IDSGLT---SEDLAVFVEDASSTWSSNLEEDYNLTIKHVSLRVPKGSFVAV 384
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 702
IGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPWILSGTIR+NILFGK +D +S
Sbjct: 385 IGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWILSGTIRENILFGKPFDSKS 444
Query: 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762
Y ETL AC LDVDISLM GGDMA IG+KGVNLSGGQRARLALARAVYHGSD+Y+LDDVLS
Sbjct: 445 YFETLSACALDVDISLMAGGDMACIGDKGVNLSGGQRARLALARAVYHGSDMYLLDDVLS 504
Query: 763 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822
AVD+QV WIL A++GP + +KTR++CTHN+QAIS ADM+VVMDKG+VKW G+ D+
Sbjct: 505 AVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAISCADMIVVMDKGKVKWSGTVTDMPK 564
Query: 823 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 882
S+ F +N+FD N + K+ L +KD + +A +I+++E+RKEG
Sbjct: 565 SISPTFSLSNDFDMP--------SPNHLTKRKEPLSIKKDDLDEISEAADIVKLEERKEG 616
Query: 883 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYL 942
RVE+TVY+NYA FSGWFI +VI +SA+LMQASRNGNDLWLSYWVD TG + YSTSFYL
Sbjct: 617 RVEVTVYRNYAAFSGWFIAIVILVSAVLMQASRNGNDLWLSYWVDKTGRGVSHYSTSFYL 676
Query: 943 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 1002
+VLCIFC+ NS LTLVRAFSFAFG L+AAV VH+ L++K++NAP FFDQTP GRILNRF
Sbjct: 677 MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHSALISKLINAPTQFFDQTPSGRILNRF 736
Query: 1003 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062
SSDLY IDDSLPFILNILLANFVGLLGI VLSYVQV FLLLL+PFW+IYSKLQFFYRST
Sbjct: 737 SSDLYTIDDSLPFILNILLANFVGLLGIIAVLSYVQVLFLLLLLPFWYIYSKLQFFYRST 796
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122
SRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+A+F EH+ LYQRTSYSE+ AS
Sbjct: 797 SRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVARFIEHLTLYQRTSYSEIIAS 856
Query: 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1182
LWLSLRLQLL A I+ F+A MAV+GSRGN P +F TPGLVGLALSYAAP+VSLLG+FL+S
Sbjct: 857 LWLSLRLQLLGAMIVLFVAVMAVLGSRGNFPISFGTPGLVGLALSYAAPLVSLLGSFLTS 916
Query: 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1242
FTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP QGL+EF NVTMRY +LP AL+
Sbjct: 917 FTETEKEMVSIERVLQYMDVPQEEVSGRQSLSGKWPVQGLVEFHNVTMRYISTLPPALNH 976
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302
I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG+NI + P+R LR AV
Sbjct: 977 ISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCNGEILVDGININHLPIRKLRSHLAV 1036
Query: 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVG 1361
VPQSPFLF+GSLRDNLDP +++D +IW +LEKC VK EVE A GL++ VKESG S+SVG
Sbjct: 1037 VPQSPFLFQGSLRDNLDPLGLSEDWRIWEILEKCKVKAEVESAGGLDSNVKESGCSYSVG 1096
Query: 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1421
QRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N IS+ECKG+TVITIAHRISTVL+
Sbjct: 1097 QRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISTECKGVTVITIAHRISTVLD 1156
Query: 1422 MDEILILDHGHLPHCG 1437
+D ILILD G L G
Sbjct: 1157 LDSILILDRGILVEQG 1172
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204674|emb|CBI25172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1637 bits (4240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1121 (74%), Positives = 929/1121 (82%), Gaps = 69/1121 (6%)
Query: 362 CLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAF 421
CL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKFAF
Sbjct: 87 CLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKFAF 146
Query: 422 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSS 481
VSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F S
Sbjct: 147 VSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLFMS 206
Query: 482 WLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLAL 541
WLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCLAL
Sbjct: 207 WLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCLAL 266
Query: 542 FNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS-NF 599
FN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S NF
Sbjct: 267 FNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQFNF 326
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSIL
Sbjct: 327 KLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSILK 386
Query: 660 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DISLM
Sbjct: 387 EMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDISLM 446
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
VGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI+G
Sbjct: 447 VGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAILG 506
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLH 839
P M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+G
Sbjct: 507 PLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVG------------------------ 542
Query: 840 MQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWF 899
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SGWF
Sbjct: 543 IRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSGWF 602
Query: 900 ITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFY----------------- 941
IT+VICLSAILMQASRNGNDLWLSYWVD TTGSS T+YSTSFY
Sbjct: 603 ITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVLLVLIKEEFVKSMVE 662
Query: 942 ------------------------LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977
LVVLCIFC+ NSFLTLVRAFSFAFG LRAAV+VHNT
Sbjct: 663 HEQFYVNVQCFLNEFEANGVSFFLLVVLCIFCVINSFLTLVRAFSFAFGGLRAAVQVHNT 722
Query: 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYV 1037
LL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFILNILLAN VGLLGIA+VLSYV
Sbjct: 723 LLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFILNILLANIVGLLGIAIVLSYV 782
Query: 1038 QVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE 1097
QV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSPI+ASFTETL+GSSTIRAFK E
Sbjct: 783 QVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSPIFASFTETLDGSSTIRAFKCE 842
Query: 1098 DYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFS 1157
D F +F EHV LYQ+TSYSEL ASLWLSLRLQLLAA +ISF+A MAVIGSR +LP +
Sbjct: 843 DLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALVISFVAMMAVIGSRDSLPISLG 902
Query: 1158 TPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1217
TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL+YMD+PQEEL G QSLSP+W
Sbjct: 903 TPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLQYMDIPQEELNGCQSLSPNW 962
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
P +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+GRTGAGKSSILNALFRLTPIC
Sbjct: 963 PSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGIIGRTGAGKSSILNALFRLTPIC 1022
Query: 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1337
G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRDNLDPF ++DDLKIW LE+CH
Sbjct: 1023 KGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRDNLDPFRVSDDLKIWKTLERCH 1082
Query: 1338 VKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
VKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKSSKVLCLDECTAN+DAQT+S+L
Sbjct: 1083 VKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKSSKVLCLDECTANIDAQTSSVL 1142
Query: 1397 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
QNAI +EC+GMTVITIAHRISTVL+MD ILILD G L G
Sbjct: 1143 QNAILTECRGMTVITIAHRISTVLSMDNILILDRGILVEQG 1183
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5001458|gb|AAD37023.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1565 bits (4051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1110 (70%), Positives = 921/1110 (82%), Gaps = 34/1110 (3%)
Query: 332 KSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN 391
+SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VN
Sbjct: 46 RSFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVN 105
Query: 392 LANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMK 451
L NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK
Sbjct: 106 LCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMK 165
Query: 452 QKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 511
KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATT
Sbjct: 166 LKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATT 225
Query: 512 PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571
PTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++
Sbjct: 226 PTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSK 285
Query: 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 631
FL C E+ + I +G F S+D+AV ++DA+C+W N EE+ N+ + QVS
Sbjct: 286 FLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSSNVEEDYNLTIKQVS 334
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDN 691
L +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPW+LSGT+R+N
Sbjct: 335 LRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWLLSGTVREN 394
Query: 692 ILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751
ILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGGQRAR ALARAVYHG
Sbjct: 395 ILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGGQRARFALARAVYHG 454
Query: 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 810
SD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+Q + + M+VVMDKG+
Sbjct: 455 SDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQVSNLSTHMIVVMDKGK 514
Query: 811 VKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQILLQEKDVVSVSD 868
V W GS D+ S+ F TNEFD S H+ K++ + + ++E V +S+
Sbjct: 515 VNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ETLSIKEDGVDEISE 565
Query: 869 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 928
A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SRNGNDLWLSYWVD
Sbjct: 566 AAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSRNGNDLWLSYWVDK 625
Query: 929 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 988
TG +VLCIFC+ NS LTLVRAFSFAFG L+AAV VHN L++K++NAP
Sbjct: 626 TGKG----------MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHNALISKLINAPTQ 675
Query: 989 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1048
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLSYVQV FLLLL+PF
Sbjct: 676 FFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLSYVQVLFLLLLLPF 735
Query: 1049 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1108
W+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+ +F EH+
Sbjct: 736 WYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVGRFIEHL 795
Query: 1109 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1168
LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P +F TPGLVGLALSY
Sbjct: 796 TLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTPGLVGLALSY 855
Query: 1169 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1228
AAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP GL+EF NV
Sbjct: 856 AAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSDKWPVHGLVEFHNV 915
Query: 1229 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288
TMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG NI
Sbjct: 916 TMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNI 975
Query: 1289 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GL 1347
+ P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+KC VK VE+V GL
Sbjct: 976 SHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAVESVGGL 1035
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N ISSECKG+
Sbjct: 1036 DSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGV 1095
Query: 1408 TVITIAHRISTVLNMDEILILDHGHLPHCG 1437
TVITIAHRISTV+++D ILILD G L G
Sbjct: 1096 TVITIAHRISTVVDLDSILILDRGILVEQG 1125
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1445 | ||||||
| UNIPROTKB|E1C368 | 1515 | ABCC10 "Uncharacterized protei | 0.528 | 0.503 | 0.353 | 2.7e-235 | |
| UNIPROTKB|E1BNL1 | 1490 | ABCC10 "Uncharacterized protei | 0.344 | 0.334 | 0.438 | 1.5e-213 | |
| UNIPROTKB|F1PF73 | 1490 | ABCC10 "Uncharacterized protei | 0.366 | 0.355 | 0.413 | 1.3e-209 | |
| RGD|1306696 | 1499 | Abcc10 "ATP-binding cassette, | 0.407 | 0.392 | 0.371 | 8.7e-209 | |
| MGI|MGI:2386976 | 1501 | Abcc10 "ATP-binding cassette, | 0.416 | 0.401 | 0.365 | 1.6e-208 | |
| UNIPROTKB|Q5T3U5 | 1492 | ABCC10 "Multidrug resistance-a | 0.435 | 0.422 | 0.364 | 3.6e-208 | |
| FB|FBgn0032018 | 1487 | CG7806 [Drosophila melanogaste | 0.808 | 0.786 | 0.354 | 1.3e-185 | |
| UNIPROTKB|F1RRK8 | 1479 | LOC100736948 "Uncharacterized | 0.344 | 0.336 | 0.431 | 4.9e-181 | |
| FB|FBgn0032456 | 1549 | MRP "Multidrug-Resistance like | 0.384 | 0.358 | 0.387 | 7.1e-181 | |
| UNIPROTKB|F1P9H1 | 1518 | ABCC1 "Multidrug resistance-as | 0.408 | 0.389 | 0.341 | 8.4e-179 |
| UNIPROTKB|E1C368 ABCC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 2.7e-235, Sum P(3) = 2.7e-235
Identities = 278/786 (35%), Positives = 424/786 (53%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQLDF-EDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ + ++ +M RG +L+ +D+ LP + + + +CWQ
Sbjct: 228 DGESWLSRFFYAWMNPLMKRGYQWKLNQPQDVCLLPRKLQAARVCDRFYACWQKSHHAQE 287
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAI 323
T L+ + A+G + LGLLK+ +GF+GPLLLN L+ F++ L G + A+
Sbjct: 288 T-VRLLSVLHAAFGLRFYSLGLLKLAGSLLGFSGPLLLNLLVNFMESRQEPLSHGVLYAL 346
Query: 324 ALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L S + + Q+S+ +++ IY+K L V S F+ GEI FMS
Sbjct: 347 GLFAGSFVGALLRNQFSYEVQKVTLMVRAAVISAIYRKALRVGSTSLSCFTVGEIVNFMS 406
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
DT R VN SFH+ WSLPFQ + LYLLY QV AF+ GLA+ +LL+P+NK IAN I
Sbjct: 407 TDTSRLVNFCLSFHEVWSLPFQFAITLYLLYQQVGVAFLGGLALALLLVPINKVIANRIM 466
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
+ +M++ KD R++ E L+ IR +K Y WE+ FS+ + R+ E++ L KYLDA
Sbjct: 467 ESNAEMLEHKDARVKLMTEFLSGIRVIKFYAWEKHFSTRINTCRAKELQKLRAIKYLDAV 526
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
CV+ WA P + S+ F + LMGHQL A VFT LAL LI PLNSFPWV+NG ++A
Sbjct: 527 CVYLWAALPVVVSIVIFITYVLMGHQLTATKVFTALALVGMLILPLNSFPWVLNGTLEAK 586
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMA-VIMQDATCSWYCXXXXX 622
+S+ R+ RFL + E A SPS + + + D + V +++ + S
Sbjct: 587 VSLDRIQRFLELVDQDLEAYYALGSPSGTATAI-DIRGADFSWVPVKEESTS---QPLST 642
Query: 623 XXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVPQ 679
+L + KG L+ V+G+VGSGKSSLL +I GE++ G ++ Q
Sbjct: 643 GSLQLHIENLSVRKGMLLGVVGKVGSGKSSLLAAITGELIKQGGQVYICDLEQGFGLATQ 702
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQX 739
PWI T+R+NILFG+ YD + Y E ++AC L D++++ GD +GE GV LSGGQ
Sbjct: 703 EPWIQFTTVRENILFGRQYDARLYEEVVEACALSEDLNILPAGDQTEVGENGVTLSGGQK 762
Query: 740 XXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAIS 798
VY ++Y+LDD L+AVDA VA ++ I+G +LQ KTRILCTH + +
Sbjct: 763 ARIALARAVYQEKELYLLDDPLAAVDADVANHLMQKCILG--ILQHKTRILCTHRTEFLE 820
Query: 799 AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 858
AD +++MD G++ G AD+ + L + + + K + ++ ++ ++
Sbjct: 821 KADALLLMDNGRIIKTGPPADI-LPLVESVPKFKDMNKRRN-DKASVPADSDEQGQEEVI 878
Query: 859 QEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGN 918
+ + S+ D + + E++KEG ++ VYK Y G + L I S +LMQASRN +
Sbjct: 879 ETEAEESLQDKCL-LHKEEEKKEGALDFQVYKAYWLAMGSCLALSILFSLLLMQASRNIS 937
Query: 919 DLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974
D WLS+W+ T +S STS L +F + ++ ++A A A+V V
Sbjct: 938 DWWLSHWISSISQTANTSVMASSTSLPSTKLLLFSIVG-LVSPIQALDTAPVPSNASVDV 996
Query: 975 HNTLLT 980
N LT
Sbjct: 997 -NFYLT 1001
|
|
| UNIPROTKB|E1BNL1 ABCC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1039 (370.8 bits), Expect = 1.5e-213, Sum P(3) = 1.5e-213
Identities = 221/504 (43%), Positives = 308/504 (61%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
FYL V NS TL+RA FA G+L+AA +H LL +++ APV FFD TP GR+L
Sbjct: 967 FYLTVYATIAGVNSLCTLLRAVLFAAGTLQAAATLHRRLLGRVLMAPVTFFDSTPTGRVL 1026
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1059
NRFSSD+ DDSLPFILNILLAN GLLG+ IY ++Q Y
Sbjct: 1027 NRFSSDVACADDSLPFILNILLANAAGLLGLLAVLGFSLPWLLLLLPPLSIIYYRVQSHY 1086
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1119
R++SRELRRL S+S SP+Y +TL G +RA + F + + + L QR ++
Sbjct: 1087 RASSRELRRLGSLSLSPLYTHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFAAS 1146
Query: 1120 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
++S IA +A++ + L + PGLVGL+LSYA + LL
Sbjct: 1147 ATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGLSLSYALSLTGLLSGL 1202
Query: 1180 LSSFTETEKEMVSLERVLEYM-DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA 1238
+SSFT+TE +VS+ER+ EY D+PQE L W QG +EFQNV + Y+P LP
Sbjct: 1203 VSSFTQTEAMLVSVERLEEYSCDLPQEPRGQRPQLGISWLSQGSVEFQNVVLVYRPGLPN 1262
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL + F ++ G ++GIVGRTG+GKSS+L LFRL G++L+DG++ + +LR
Sbjct: 1263 ALDGVTFRVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGMDTSQLELAELRS 1322
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFVKESGIS 1357
+ A++PQ PFLF G++R+NLDP + +D +W LE+CH+ E +E++G L+ + E G
Sbjct: 1323 QLAIIPQEPFLFSGTVRENLDPRGLYEDGALWQALEQCHLSEAIESMGGLDGELGEGGRR 1382
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ IS TV+TIAHR++
Sbjct: 1383 LSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTISKRFANKTVLTIAHRLN 1442
Query: 1418 TVLNMDEILILDHGHLPHCGCAAA 1441
T+LN D +L+L G + G AA
Sbjct: 1443 TILNSDRVLVLHAGRVAELGSPAA 1466
|
|
| UNIPROTKB|F1PF73 ABCC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 1.3e-209, Sum P(3) = 1.3e-209
Identities = 223/539 (41%), Positives = 320/539 (59%)
Query: 906 LSA-ILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFA 964
LSA +L+ + RN L+ S + +S FYL V NS T +RA FA
Sbjct: 935 LSAQLLLFSPRN---LYTSVFPLPKTASNGSSDIRFYLTVYATIAGVNSLCTFLRAVLFA 991
Query: 965 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1024
G+L+AA +H LL +++ APV FFD TP GR+LNRFSSD+ DDSLPF LNILLAN
Sbjct: 992 AGTLQAAATLHRRLLCRVLMAPVTFFDSTPAGRVLNRFSSDVACADDSLPFTLNILLANA 1051
Query: 1025 VGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTET 1084
GLLG+ +Y ++Q YR++SRELRRL S++ SP+Y +T
Sbjct: 1052 AGLLGLLAVLGSGLPWLLLLLPVLSVLYYRVQRHYRASSRELRRLSSLTLSPLYTHLADT 1111
Query: 1085 LNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEXXXXXXXXXXXXXXXXFIISFIATMA 1144
L G +RA + F + + + L QR ++ ++S IA +A
Sbjct: 1112 LAGLPVLRAAGATSRFEEENQRLLELNQRCQFAASATIQWLDIRLQLMGATVVSAIAGIA 1171
Query: 1145 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVP 1203
++ + L + PGLVGL+LSYA + LL +SSFT+TE +VS+ER+ EY D+P
Sbjct: 1172 LVQHQQGL----TNPGLVGLSLSYALSLTGLLSGLVSSFTQTETMLVSVERLEEYSCDLP 1227
Query: 1204 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1263
QE L W QG +EFQ+V + Y+P LP AL + F ++ G ++GIVGRTG+GK
Sbjct: 1228 QEPQGQLPRLGVGWLTQGSVEFQDVVLVYRPGLPNALDGVTFRVQPGEKLGIVGRTGSGK 1287
Query: 1264 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1323
SS+L LFRL G++L+DG++ + +LR + A++PQ PFLF G++R+NLDP +
Sbjct: 1288 SSLLLVLFRLLEPSSGRVLLDGVDTSQLELAELRSQLAIIPQEPFLFSGTVRENLDPQGL 1347
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVG-LETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
++D +W LE+CH+ E + ++G L+ + E G S S+GQRQL+CLARALL +K+LC+D
Sbjct: 1348 HEDRALWQALEQCHLSEVIVSLGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCID 1407
Query: 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441
E TA+VD +T +LQ I TV+TIAHR++T+LN D +L+L G + AA
Sbjct: 1408 EATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPAA 1466
|
|
| RGD|1306696 Abcc10 "ATP-binding cassette, subfamily C (CFTR/MRP), member 10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1015 (362.4 bits), Expect = 8.7e-209, Sum P(3) = 8.7e-209
Identities = 231/622 (37%), Positives = 341/622 (54%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ ++ + ++ RGV +L +D LP + P+ + W+
Sbjct: 217 DGESWLSRFSYAWLAPLLARGVRGELRQPQDTCRLPRRLHPAYLARAFQAHWKE------ 270
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-G--YVL 321
L RA+ A+G YI LGLLK+V +GF+GPLLL+ L+ FL++G L G YVL
Sbjct: 271 -GAQLWRALYGAFGCCYIALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHGLLYVL 329
Query: 322 AIALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTF 381
+A G S++ + QY + +++I+Y+K L +L S GE+
Sbjct: 330 GLASG--SVISAVLQNQYGYEVRKVTLQARVAVLSILYRKTL--KLGP-SRPPTGEVLNL 384
Query: 382 MSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANL 441
+ D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK IA
Sbjct: 385 LGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYEQVGVAFLAGLVLALLLVPVNKVIATR 444
Query: 442 IANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 501
I ++M++ KD R++ E+L+ IR LK + WEQ + R+ E+ L KYLD
Sbjct: 445 IMANNQEMLRHKDARVKLMTELLSGIRVLKFFRWEQALGDRVKACRTQELGRLRVIKYLD 504
Query: 502 AWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLID 561
A CV+ WA P + + F + L+GHQL A VFT LAL + LI PLN+FPWVINGL++
Sbjct: 505 AACVYLWAALPVVICIVIFITYVLLGHQLTATKVFTALALVHMLILPLNNFPWVINGLLE 564
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXX 621
+ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 565 SKVSLDRIQRFLDLPSYSPEAYYSPDPPTEPSTVLE----------LHEALFSW---DPT 611
Query: 622 XXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVP 678
L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 612 GTSQKTFISHLQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSDLSKGFGLAT 671
Query: 679 QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
Q PWI TIRDN+LFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV LSGGQ
Sbjct: 672 QEPWIQCATIRDNVLFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVTLSGGQ 731
Query: 739 XXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
VY +Y+LDD L+AVDA VA +L I+G + TR+LCTH + +
Sbjct: 732 RARIALARAVYQEKTLYLLDDPLAAVDADVANHLLHRCILGV-LGHTTRLLCTHRTEYLE 790
Query: 799 AADMVVVMDKGQVKWIGSSADL 820
AD+V++M+ G++ G +++
Sbjct: 791 RADLVLLMEAGRLVRAGPPSEI 812
|
|
| MGI|MGI:2386976 Abcc10 "ATP-binding cassette, sub-family C (CFTR/MRP), member 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 1.6e-208, Sum P(3) = 1.6e-208
Identities = 233/637 (36%), Positives = 343/637 (53%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQLDF-EDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ ++ + ++ RGV +L D LP + P+ + W+
Sbjct: 217 DGESWLSRFSYAWLAPLLARGVRGELQQPRDTCRLPRRLHPAFLARVFQAHWKE------ 270
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-G--YVL 321
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L G YVL
Sbjct: 271 -GAQLWRALYRAFGCCYLALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHGLLYVL 329
Query: 322 AIALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTF 381
+A G +++ + QY + +++ +Y+K L +L S GE+
Sbjct: 330 GLAGG--TVISAVLQNQYGYEVRKVTLQARVAVLSTLYRKAL--KLGP-SRPPTGEVLNL 384
Query: 382 MSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANL 441
+ D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK IA
Sbjct: 385 LGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGMAFLAGLVLALLLVPVNKVIATR 444
Query: 442 IANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 501
I + ++M++ KD R++ E+L+ IR +K + WEQ + R+ E+ L KYLD
Sbjct: 445 IMASNQEMLRHKDARVKLMTELLSGIRVIKFFRWEQALGDRVKACRTKELGRLRVIKYLD 504
Query: 502 AWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLID 561
A CV+ WA P + + F + LMGHQL A VFT LAL LI PLN+FPWVINGL++
Sbjct: 505 AACVYLWAALPVVICITIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVINGLLE 564
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXX 621
+ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 565 SKVSLDRIQRFLDLPSYSPEAYYSPDPPAEPSTALE----------LHEALFSW---DPI 611
Query: 622 XXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGSIAYVP 678
L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 612 GASQKTFISHLQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSELSKGFGLAT 671
Query: 679 QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV LSGGQ
Sbjct: 672 QEPWIQCATIRDNILFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVTLSGGQ 731
Query: 739 XXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
VY +Y+LDD L+AVDA VA +L I+G + TR+LCTH + +
Sbjct: 732 RARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCILGV-LSHTTRLLCTHRTEYLE 790
Query: 799 AADMVVVMDKGQVKWIGSSADLA--VSLYSGFWSTNE 833
AD+V++M+ GQ+ G +++ V W+ E
Sbjct: 791 RADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWAEKE 827
|
|
| UNIPROTKB|Q5T3U5 ABCC10 "Multidrug resistance-associated protein 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1011 (360.9 bits), Expect = 3.6e-208, Sum P(3) = 3.6e-208
Identities = 245/672 (36%), Positives = 356/672 (52%)
Query: 206 NNQSYWDLMAFKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 264
+ +S+ ++ + ++ RG +L +D+ LP + P+ + WQ
Sbjct: 216 DGESWLSRFSYAWLAPLLARGACGELRQPQDICRLPHRLQPTYLARVFQAHWQE------ 269
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAI 323
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L G + A+
Sbjct: 270 -GARLWRALYGAFGRCYLALGLLKLVGTMLGFSGPLLLSLLVGFLEEGQEPLSHGLLYAL 328
Query: 324 ALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L ++L + QY + ++ I+Y K L +L S GE +
Sbjct: 329 GLAGGAVLGAVLQNQYGYEVYKVTLQARGAVLNILYCKAL--QLGP-SRPPTGEALNLLG 385
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
D++R +N A SFH+AW LP Q+ + LYLLY QV AFV GL + +LL+PVNK IA I
Sbjct: 386 TDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGVAFVGGLILALLLVPVNKVIATRIM 445
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
+ ++M++ KD R++ E+L+ IR +K GWEQ + + R+ E+ L KYLDA
Sbjct: 446 ASNQEMLQHKDARVKLVTELLSGIRVIKFCGWEQALGARVEACRARELGRLRVIKYLDAA 505
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
CV+ WA P + S+ F + LMGHQL A VFT LAL LI PLN+FPWVINGL++A
Sbjct: 506 CVYLWAALPVVISIVIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVINGLLEAK 565
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXXXX 623
+S+ R+ FL + + + + P+ S L + A SW
Sbjct: 566 VSLDRIQLFLDLPNHNPQAYYSPDPPAEPSTVLE----------LHGALFSW---DPVGT 612
Query: 624 XXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVPQV 680
L + KG LV ++G+VG GKSSLL +I GE+ G + G Q
Sbjct: 613 SLETFISHLEVKKGMLVGIVGKVGCGKSSLLAAIAGELHRLRGHVAVRGLSKGFGLATQE 672
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXX 740
PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV LSGGQ
Sbjct: 673 PWIQFATIRDNILFGKTFDAQLYKEVLEACALNDDLSILPAGDQTEVGEKGVTLSGGQRA 732
Query: 741 XXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISA 799
VY ++Y+LDD L+AVDA VA +L I+G ML TR+LCTH + +
Sbjct: 733 RIALARAVYQEKELYLLDDPLAAVDADVANHLLHRCILG--MLSYTTRLLCTHRTEYLER 790
Query: 800 ADMVVVMDKGQVKWIGSSADLA--VSLYSGFWSTN--EFD--TSLHMQKQEMRTNASSAN 853
AD V++M+ G++ G +++ V W+ N E D T+ +Q E +T
Sbjct: 791 ADAVLLMEAGRLIRAGPPSEILPLVQAVPKAWAENGQESDSATAQSVQNPE-KTKEGLEE 849
Query: 854 KQI----LLQEK 861
+Q LLQE+
Sbjct: 850 EQSTSGRLLQEE 861
|
|
| FB|FBgn0032018 CG7806 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1800 (638.7 bits), Expect = 1.3e-185, P = 1.3e-185
Identities = 448/1264 (35%), Positives = 678/1264 (53%)
Query: 216 FKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKL-LSCWQAQRSCNCTNPSLVRAI 273
F + ++ +GV +L EDL LP ++ + KL L+ Q+Q SL RA+
Sbjct: 238 FHWVQPLILKGVAGKLRKIEDLFDLPDALNITRLSEKLHLALSQSQ--------SLWRAL 289
Query: 274 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIALGL--TSI 330
+G + +G+L+++ D GFAGPLLL L++ H D V ALGL +++
Sbjct: 290 HRCFGVEFYLIGILRLIADLSGFAGPLLLGGLLR-----QDHADPNQVYYYALGLFGSTL 344
Query: 331 LKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTV 390
L + T + + ++ IY+K L R + S+ ++ MS DTDR V
Sbjct: 345 LSAVCATHFDWRMAMVSMKMRVGVVNSIYRKALEARGLKESK---PDLLNLMSTDTDRIV 401
Query: 391 NLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMM 450
N SFH WS+PF++ LYLLY Q+ AF++G+ LLIP+N+W+A I + +M
Sbjct: 402 NSCISFHFFWSIPFKLFTTLYLLYLQLGAAFLAGVIFAALLIPINRWLAKRIGIFSSGLM 461
Query: 451 KQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWAT 510
KD R+ T E + + +K+ WE IF + + R E++ LS RKYLDA CV+FWAT
Sbjct: 462 TAKDARLSATTETMQGAKQIKINAWEDIFITKIRGLRQEELRFLSKRKYLDAMCVYFWAT 521
Query: 511 TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 570
TP L L TFG+ LMG+ L A+ +T +AL LI PLN+FPWV+NGLI+A++SI+R+
Sbjct: 522 TPVLMCLLTFGVSVLMGNPLIASTTYTSVALLYMLIGPLNAFPWVLNGLIEAWVSIKRVQ 581
Query: 571 RFLGCSEYKHELEQAANSPSYISNGLSNFNSKDM--AVIMQDATCSWYCXXXXXXXXXX- 627
+ + + +G + D A ++Q C+ +C
Sbjct: 582 QLMDVPNLDYSSYYNPIMRGSGGSGAGDDAPLDAPKASVLQ-MKCASFCHDSDEQTSPTP 640
Query: 628 ---XXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGSIAYVPQVP 681
++ + G LV + G VG GKSS L++I+ + T G + + YVPQ P
Sbjct: 641 FRMKDINVDIKAGQLVCIEGPVGGGKSSFLSAIVANLQCTDGEVCVQELTTGFGYVPQSP 700
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXX 741
W+ GTIRDNI++G +D Q Y L AC L+ D+ ++ GGD+ +GE G LSGGQ
Sbjct: 701 WLQRGTIRDNIVWGAQFDEQWYKTVLHACALEEDLQIL-GGDLVGVGENGRTLSGGQRAR 759
Query: 742 XXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAA 800
VY +Y+LDDVLS++DA VAR I+ + I+ +L+ KTRI+ T N+Q A
Sbjct: 760 VALARAVYQDKKVYLLDDVLSSLDAHVARHIIKHCIL--RLLKHKTRIVVTRNIQLFFHA 817
Query: 801 DMVVVMDKGQV---KWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQIL 857
+ ++ + GQ+ +++ S +L++ + D Q+ +R + + Q
Sbjct: 818 NQILQVKDGQLLPSEYMTQSIELSLD--------EDADDE---QEPTVRRRSVELSNQY- 865
Query: 858 LQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNG 917
+K + S+ ++E E R+ G + V+ Y K + + LS +LMQ +RN
Sbjct: 866 -DKKSLDSL------LLE-ELREYGHLSGNVFTCYWKAVTSPLAFTVLLSVVLMQLTRNL 917
Query: 918 NDLWLSYWV----------DT---------TGSSQTK--YSTSFYLVVLCIFCMFNSFLT 956
+D WL+YWV DT T ++T+ ++T FYL + + NS +T
Sbjct: 918 SDAWLAYWVTETTLDPHKNDTSLDHILMRPTVGNETESGHTTKFYLSIFTAIAVSNSLVT 977
Query: 957 LVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016
L RAF FA+ ++AA+ +H LL K++ A FFD T GRILNRFSSD +DDSLPFI
Sbjct: 978 LARAFLFAYAGIKAAIFMHEKLLKKVMFAKFNFFDITSVGRILNRFSSDTNTVDDSLPFI 1037
Query: 1017 LNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSP 1076
LNILLA GL+G IY LQ YR SR+++RL S + SP
Sbjct: 1038 LNILLAQLAGLVGALCVSLYAMPWLGLVIIPMVPIYLSLQQRYRHASRDIKRLSSNAMSP 1097
Query: 1077 IYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEXXXXXXXXXXXXXXXXFI 1136
+Y FTETL G +TIR+ ++ F F+ E
Sbjct: 1098 LYTHFTETLQGLTTIRSMRASPRFQRDFQ--------VKLEESIKAQLTQSAAQQWLALR 1149
Query: 1137 ISFIATMAVIGSRGNLPA-TFS---TPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVS 1192
+ + T+ ++G G L A T S PGLVGL +SYA I LG+ L + ETE+E+V+
Sbjct: 1150 LQLLGTL-LVGGAGLLAAITASHTTNPGLVGLCISYALSITGQLGDLLHAVAETEQELVA 1208
Query: 1193 LERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGT 1251
+ER+ +Y+ + +E+ + P WP QG++ F+ V + Y+ L AL I F E
Sbjct: 1209 VERIDQYLQLEEEQNASGSAEPPFGWPTQGVLSFREVQLSYREHLAPALRGITFQTEAFE 1268
Query: 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1311
++GIVGRTGAGK+S+L AL R+ P+ G+I +D +N+ P+ LR R V+ Q PFLFE
Sbjct: 1269 RIGIVGRTGAGKTSVLAALLRVAPLTHGEIRLDQVNLKTLPLSVLRERIGVITQEPFLFE 1328
Query: 1312 GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLA 1369
G++R+NLDP H D +IW ++ + + GL+ V+ G + S GQRQL+CLA
Sbjct: 1329 GTVRENLDPRHGFYDSEIWHAIKNSAAATLLVQQLGGLDGKVETCGNNLSAGQRQLLCLA 1388
Query: 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1429
RALLK++KV+ +DE T+N+D ++ +Q A+ + K T++ IAHR+ + MD I++LD
Sbjct: 1389 RALLKNAKVVAIDEGTSNLDDESDLSIQQALRNAFKSCTLLFIAHRLRGLHAMDRIIVLD 1448
Query: 1430 HGHL 1433
G +
Sbjct: 1449 DGRI 1452
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| UNIPROTKB|F1RRK8 LOC100736948 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1017 (363.1 bits), Expect = 4.9e-181, Sum P(4) = 4.9e-181
Identities = 219/508 (43%), Positives = 307/508 (60%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
FYL V NSF TL+RA FA G+LRAA +H LL +++ APV FFD TP GR+L
Sbjct: 952 FYLTVYATIAGVNSFCTLLRAVLFAAGTLRAAATLHRRLLCRVLMAPVTFFDSTPTGRVL 1011
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1059
NRFSSD+ DDSLPFILNILLAN GLLG+ IY ++Q Y
Sbjct: 1012 NRFSSDVACADDSLPFILNILLANTAGLLGLLVVLGSGLPWLLLLLPPLSAIYYRVQRHY 1071
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1119
R++SRELRRL S++ SP+Y +TL G +RA + F + + + L QR ++
Sbjct: 1072 RASSRELRRLGSLTLSPLYTHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFASS 1131
Query: 1120 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1179
++S IA +A++ + L + PGLVGL+LSYA + LL
Sbjct: 1132 ATMQWLDIRLQLMGATVVSAIAGIALVQHQQGL----ANPGLVGLSLSYALSLTGLLSGL 1187
Query: 1180 LSSFTETEKEMVSLERVLEYM-DVPQEELC----GYQSLSPDWPFQGLIEFQNVTMRYKP 1234
+SSFT+TE +VS+ER+ EY D+PQE G L W QG +EFQ+V + Y+P
Sbjct: 1188 VSSFTQTETMLVSVERLEEYSCDLPQEPRGQWPQGPHQLGISWLSQGSVEFQDVVLVYRP 1247
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
LP AL + F ++ G ++GIVGRTG+GKSS+L LFRL G++L+DG++ +
Sbjct: 1248 GLPNALDGVTFRVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGVDTSQLELA 1307
Query: 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFVKE 1353
+LR + A++PQ PFLF G++R+NLDP + +D +W LE+CH+ + ++G L+ + E
Sbjct: 1308 ELRSQLAIIPQEPFLFSGTVRENLDPRGLYEDRALWQALEQCHLSGVLRSMGGLDAELGE 1367
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1413
G S S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I TV+TIA
Sbjct: 1368 GGRSLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICQRFANKTVLTIA 1427
Query: 1414 HRISTVLNMDEILILDHGHLPHCGCAAA 1441
HR++T+LN D +L+L G + AA
Sbjct: 1428 HRLNTILNSDRVLVLQAGRVAELDSPAA 1455
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| FB|FBgn0032456 MRP "Multidrug-Resistance like Protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 7.1e-181, Sum P(3) = 7.1e-181
Identities = 220/568 (38%), Positives = 316/568 (55%)
Query: 872 EIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS 931
++IE E+ + G VE VYK+Y K G F+++ + + QA + G++LWL+ W +
Sbjct: 962 KLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATLVLNFVFQAFQIGSNLWLTQWANDQNV 1021
Query: 932 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL-FF 990
+ YL V F L G +AA +HN LL I+ V FF
Sbjct: 1022 ANDTGLRDMYLGVYGAFGFGQGVLAYFAVVIVYLGGFQAAKTIHNELLAVIIRGSVCRFF 1081
Query: 991 DQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXX 1050
D TP GR+LN FS D+ ++D+ LP ++ + +L
Sbjct: 1082 DITPIGRLLNSFSGDMDVVDEELPATMDSFMTFIFMVLATIVVISLSTPIFLAVIVPIAF 1141
Query: 1051 IYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVL 1110
+Y Q FY +TSR+L RL+SVSRSPIY+ F+ET+ G+STIRA+ D F+ + V
Sbjct: 1142 LYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDK 1201
Query: 1111 YQRTSYSEXXXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAA 1170
Q Y II F + AV+G + N PGLVGL++SYA
Sbjct: 1202 NQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQTN-------PGLVGLSVSYAL 1254
Query: 1171 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE---ELCGYQSLSPDWPFQGLIEFQN 1227
+ L + ++ E +VS+ER+ EY + QE EL ++ +WP +G +EFQN
Sbjct: 1255 QVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWELEQDKNKPKNWPQEGRVEFQN 1314
Query: 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1287
+RY+ L L ++F I+GG +VGIVGRTGAGKSS+ ALFR+ GG+I +DG++
Sbjct: 1315 FQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVD 1374
Query: 1288 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE--AV 1345
I + + LR R ++PQ P LF GSLR NLDPF + D +IW LE H+K V+ A
Sbjct: 1375 IASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAA 1434
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
GL + E G + SVGQRQL+CLARALL+ +KVL LDE TA VD +T ++Q I +E K
Sbjct: 1435 GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRTEFK 1494
Query: 1406 GMTVITIAHRISTVLNMDEILILDHGHL 1433
TV+TIAHR++T+L+ D++++LD G +
Sbjct: 1495 ECTVLTIAHRLNTILDSDKVIVLDKGQI 1522
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| UNIPROTKB|F1P9H1 ABCC1 "Multidrug resistance-associated protein 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 8.4e-179, Sum P(4) = 8.4e-179
Identities = 207/607 (34%), Positives = 334/607 (55%)
Query: 841 QKQEMRTNASSANKQILLQEKDVVSV------SDDAQEIIEVEQRKEGRVELTVYKNYAK 894
Q Q +N+SS + + L + ++DA +++E ++ + G+V+L+VY +Y K
Sbjct: 896 QLQRQLSNSSSYSGDVSLHHTSTAELQKAGPKNEDAWKLVEADKAQTGQVKLSVYWDYMK 955
Query: 895 FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSF 954
G FI+ + + + ++ WLS W D + T+ T L V +
Sbjct: 956 AIGLFISFLSIFLFLCNHVASLVSNYWLSLWTDDPIVNGTQEHTKIRLSVYGALGISQGI 1015
Query: 955 LTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLP 1014
+ + + G + A+ ++H LL ++ +P+ FF++TP G ++NRFS +L +D +P
Sbjct: 1016 TVFGYSMAVSIGGIFASRRLHVDLLQNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIP 1075
Query: 1015 FILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSR 1074
++ + + + ++G IY +Q FY ++SR+L+RL+SVSR
Sbjct: 1076 QVIKMFMGSLFNVIGACIIILLATPIASIIIPPLGLIYFFVQRFYVASSRQLKRLESVSR 1135
Query: 1075 SPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEXXXXXXXXXXXXXXXX 1134
SP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y
Sbjct: 1136 SPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGN 1195
Query: 1135 FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLE 1194
I+ F A +VI SR +L A GLVGL++SY+ + + L + +E E +V++E
Sbjct: 1196 CIVLFAALFSVI-SRHSLSA-----GLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVE 1249
Query: 1195 RVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQ 1252
R+ EY + +E Q ++P WP G +EF++ +RY+ +L L IN TI GG +
Sbjct: 1250 RLKEYSETEKEAPWQIQEMAPPSTWPQVGRVEFRDYGLRYRENLDLVLKHINITINGGEK 1309
Query: 1253 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1312
VGIVGRTGAGKSS+ LFR+ G+I++D +NI + DLR + ++PQ P LF G
Sbjct: 1310 VGIVGRTGAGKSSLTLGLFRINESAEGEIIIDDINIAKIGLHDLRVKITIIPQDPVLFSG 1369
Query: 1313 SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG--LETFVKESGISFSVGQRQLICLAR 1370
SLR NLDPF D ++W+ LE H+K+ V + L E G + SVGQRQL+CLAR
Sbjct: 1370 SLRMNLDPFSQYSDEEVWTSLELAHLKDFVSGLPDKLNQECAEGGENLSVGQRQLVCLAR 1429
Query: 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1430
ALL+ +K+L LDE TA VD +T ++Q+ I ++ TV+TIAHR++T+++ +++LD
Sbjct: 1430 ALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFDDCTVLTIAHRLNTIMDYTRVIVLDK 1489
Query: 1431 GHLPHCG 1437
G + CG
Sbjct: 1490 GEIRECG 1496
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5T3U5 | MRP7_HUMAN | No assigned EC number | 0.3900 | 0.8380 | 0.8116 | yes | no |
| Q9SKX0 | AB13C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6481 | 0.9460 | 0.9695 | yes | no |
| Q8R4P9 | MRP7_MOUSE | No assigned EC number | 0.3763 | 0.8643 | 0.8321 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | ATMRP11 | ATMRP11; ATPase, coupled to transmembrane movement of substances; member of MRP subfamily ; Pump for glutathione S-conjugates (By similarity) (1251 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT4G08455 | BTB/POZ domain-containing protein; BTB/POZ domain-containing protein; FUNCTIONS IN- protein bin [...] (243 aa) | • | 0.821 | |||||||
 | CYP705A32 | CYP705A32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; m [...] (526 aa) | • | 0.786 | |||||||
 | AT1G12570 | glucose-methanol-choline (GMC) oxidoreductase family protein; glucose-methanol-choline (GMC) ox [...] (572 aa) | • | 0.716 | |||||||
 | HAG2 | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone ac [...] (467 aa) | • | 0.677 | |||||||
 | AT1G77540 | H3/H4 histone acetyltransferase; Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT [...] (114 aa) | • | 0.655 | |||||||
 | AT2G20270 | glutaredoxin family protein; glutaredoxin family protein; FUNCTIONS IN- electron carrier activi [...] (179 aa) | • | 0.599 | |||||||
 | ABC1At | ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter; Encodes an ABC1-like protein, mem [...] (623 aa) | • | 0.597 | |||||||
 | EIF3K | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K); translation initiation factor; Encodes ini [...] (226 aa) | • | 0.510 | |||||||
 | PDR13 | PDR13; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; PDR13; FUNCTIONS IN [...] (1390 aa) | • | • | 0.451 | ||||||
 | AT5G44410 | FAD-binding domain-containing protein; FAD-binding domain-containing protein; FUNCTIONS IN- ele [...] (535 aa) | • | 0.435 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1445 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-172 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-101 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-89 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-70 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-70 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-70 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-68 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-63 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-61 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-59 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-56 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-56 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 6e-54 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-53 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-53 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-51 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-51 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-50 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-50 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-50 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-48 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-48 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-47 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-47 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-46 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-45 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-45 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 9e-44 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-42 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-41 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-41 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-40 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-40 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-40 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-39 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-38 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-38 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-36 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-36 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-36 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-35 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-34 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-33 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-33 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 9e-33 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-32 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-32 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-32 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-31 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-31 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-31 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-31 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-30 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-30 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-30 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-29 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-28 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-28 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-28 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-28 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-28 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-27 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-26 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-26 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-26 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-26 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 9e-26 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-25 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-25 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-24 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-24 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-24 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-24 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-24 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-24 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-23 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-23 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-23 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-23 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-23 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-23 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-22 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-22 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-22 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-22 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-22 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-22 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-21 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-21 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-21 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-21 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-21 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-20 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-20 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-19 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-19 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-19 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-19 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 8e-19 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-18 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-18 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-18 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-18 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-18 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-18 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-18 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-18 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-18 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-18 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-18 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-17 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-17 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-17 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-16 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-16 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-16 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-16 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-16 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-15 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-15 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-15 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-15 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-15 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-15 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-15 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-15 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-15 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-15 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-15 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-14 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-14 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-14 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-14 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-14 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-14 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-14 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-14 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 7e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-13 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-13 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-13 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-13 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-13 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-13 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-13 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-13 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 8e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-12 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-12 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-12 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-12 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-12 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-12 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-12 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-12 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-12 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-11 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-11 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-11 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-11 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-10 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-10 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-09 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 7e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 7e-09 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-08 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 9e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 9e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-07 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-07 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 5e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-06 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-05 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-04 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 5e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 7e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 8e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 9e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.001 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 0.001 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 0.001 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.001 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.001 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.002 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 0.002 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.002 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.002 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.003 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.003 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.003 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.003 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.004 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 805 bits (2080), Expect = 0.0
Identities = 427/1223 (34%), Positives = 671/1223 (54%), Gaps = 70/1223 (5%)
Query: 266 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAIA 324
PSL + + +G ++ K ++D + F GP +L+ LI+F+ GY
Sbjct: 304 KPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGL 363
Query: 325 LGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 383
L + + L++ QY FH+ + +++++++M +Y+K L + + R + GEI MS
Sbjct: 364 LFVCACLQTLILHQY-FHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMS 422
Query: 384 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 443
VD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ +L++P+N +A
Sbjct: 423 VDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTK 482
Query: 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503
MK KD RI+ EIL I+ LK+Y WE F + R E+K L YL A
Sbjct: 483 TYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542
Query: 504 CVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLID 561
F W TP L +L TF ++ + LDA F LALFN L PLN P VI+ ++
Sbjct: 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQ 602
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 621
A +S++RL FL ELE + I G N ++ + +AT +W
Sbjct: 603 ASVSLKRLRIFLS----HEELEPDSIERRTIKPGEGN------SITVHNATFTW----AR 648
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G +H GS+AYVPQ
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA 708
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + ++R+NILFGK + + Y + L+AC L D+ ++ GD IGEKGVNLSGGQ+ R
Sbjct: 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAA 800
++LARAVY +DIY+ DD LSAVDA V + I + I +L+ KTRIL TH + +
Sbjct: 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828
Query: 801 DMVVVMDKGQVKWIGSSADLAV--SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 858
D+++VM G++ +GS +L ++ F T D + S K+ L
Sbjct: 829 DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKL 888
Query: 859 QEKDVVSVSDDAQE-------------------------------------IIEVEQRKE 881
E + + V+D + ++E ++ +
Sbjct: 889 IE-NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQT 947
Query: 882 GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFY 941
G+VEL+VY +Y K G FIT + + S ++ WLS W D + T+ +TS
Sbjct: 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR 1007
Query: 942 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
L V + F + + + G ++A+ +H LL + +P+ FF++TP G ++NR
Sbjct: 1008 LSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNR 1067
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
FS +L +D +P ++ + + + ++G +V+ +++ P +Y +Q FY +
Sbjct: 1068 FSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVA 1127
Query: 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121
+SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A
Sbjct: 1128 SSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187
Query: 1122 SLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLS 1181
+ WL++RL+ + I+ F A AVI R +L + GLVGL++SY+ + L +
Sbjct: 1188 NRWLAVRLECVGNCIVLFAALFAVIS-RHSL-----SAGLVGLSVSYSLQVTFYLNWLVR 1241
Query: 1182 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEFQNVTMRYKPSLPAA 1239
+E E +V++ER+ EY + +E Q +P WP +G +EF+N +RY+ L
Sbjct: 1242 MSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV 1301
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L IN TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLNI + DLR +
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1357
++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L+ E G +
Sbjct: 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
SVGQRQL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481
Query: 1418 TVLNMDEILILDHGHLPHCGCAA 1440
T+++ +++LD G + G +
Sbjct: 1482 TIMDYTRVIVLDKGEVAEFGAPS 1504
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 776 bits (2006), Expect = 0.0
Identities = 422/1233 (34%), Positives = 682/1233 (55%), Gaps = 41/1233 (3%)
Query: 216 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICC 275
F + +M G + L +D+ L T T + CW + P L+RA+
Sbjct: 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKK--PKPWLLRALNN 297
Query: 276 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFF 335
+ G + G K+ ND F GPLLLN L++ +Q G GY+ A ++ + +L
Sbjct: 298 SLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLC 357
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 395
+ QY ++ ++ +LRS+++ +++K L + R +F+ G+I M+ D + +
Sbjct: 358 EAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ 417
Query: 396 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455
H WS PF+I +A+ LLY Q+ A + G + +L+ P+ +I + + T++ +++ D+
Sbjct: 418 LHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477
Query: 456 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLF 515
RI E+L + T+K Y WE F S + R E+ + L A+ F + P L
Sbjct: 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLV 537
Query: 516 SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 575
++ +FG+F L+G L A FT L+LF L PL P +I ++A +S++RL L
Sbjct: 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL-- 595
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 635
E N P + GL A+ +++ SW E L+ ++L +P
Sbjct: 596 --LAEERVLLPNPP--LEPGLP-------AISIKNGYFSWDSKAERP---TLSNINLDVP 641
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGSIAYVPQVPWILSGTIRDNILF 694
GSLVA++G G GK+SL++++LGE+ + S+ G++AYVPQV WI + T+RDNILF
Sbjct: 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701
Query: 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 754
G +DP+ Y + L D+ L+ GGD+ IGE+GVN+SGGQ+ R+++ARAVY SD+
Sbjct: 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
Query: 755 YMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWI 814
Y+ DD LSA+DA V R + I + KTR+L T+ + +S D ++++ +G +K
Sbjct: 762 YIFDDPLSALDAHVGRQVFDKCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820
Query: 815 GSSADLAVS------LYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVS--- 865
G+ +L+ + L E+ ++ + ++ AN +KD S
Sbjct: 821 GTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKK 880
Query: 866 VSDDAQEIIEVEQRKEGRVELTVYKNY-AKFSGWFITLVICLSAILMQASRNGNDLWLSY 924
+ +I+ E+R+ G V V + Y G ++ +++ L +L + R + WLS
Sbjct: 881 SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940
Query: 925 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984
W D + FY ++ + +TL+ ++ SL AA ++H+ +L I+
Sbjct: 941 WTDQGTPKT--HGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR 998
Query: 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1044
AP+ FF P GRI+NRF+ DL ID ++ +N+ L LL V++ V L
Sbjct: 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058
Query: 1045 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104
++P ++ +Y+ST+RE++RLDS++RSP+YA F E LNG STIRA+K+ D MA+
Sbjct: 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAEI 1117
Query: 1105 KEHVVLYQ-RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG-SRGNLPATFSTPGLV 1162
+ R + ++++ WL++RL+ L +I A+ AV+ R A F++ +
Sbjct: 1118 NGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFAS--TM 1175
Query: 1163 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS--LSPDWPFQ 1220
GL LSYA I SLL L + E + ++ERV Y+D+P E ++ P WP
Sbjct: 1176 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSS 1235
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G I+F++V +RY+P LP LH ++F I +VGIVGRTGAGKSS+LNALFR+ + G+
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
IL+DG +I + DLR ++PQ+P LF G++R NLDPF+ ++D +W LE+ H+K+
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKD 1355
Query: 1341 EVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+ ++GL+ V E+G +FSVGQRQL+ LARALL+ SK+L LDE TA VD +T +++Q
Sbjct: 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
I E K T++ IAHR++T+++ D IL+LD G
Sbjct: 1416 TIREEFKSCTMLIIAHRLNTIIDCDRILVLDAG 1448
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 727 bits (1877), Expect = 0.0
Identities = 423/1248 (33%), Positives = 697/1248 (55%), Gaps = 52/1248 (4%)
Query: 207 NQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW--QAQRSCNC 264
S + + F + +M G K + +D+ L T + CW +++R
Sbjct: 231 YASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRP--- 287
Query: 265 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIA 324
P L+RA+ + G + G+ K+ +D F GP++L+ L++ +Q+G GYV A
Sbjct: 288 -KPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFL 346
Query: 325 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 384
+ ++QY ++ ++ +LRS+++ I+ K L + R F+ G++ ++
Sbjct: 347 IFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITT 406
Query: 385 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
D + +A H WS PF+I V++ LLY Q+ A + G I LLIP+ I +
Sbjct: 407 DANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRK 466
Query: 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504
T++ ++ D+R+ EIL + T+K Y WE+ F S + R+ E+ + L A+
Sbjct: 467 LTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFN 526
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 564
F + P + +L +FG+F L+G L A FT L+LF L SPLN P +++ +++A +
Sbjct: 527 SFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANV 586
Query: 565 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQN 624
S++R+ L E A N P + G A+ +++ SW + +
Sbjct: 587 SLQRIEELL----LSEERILAQNPP--LQPGAP-------AISIKNGYFSW---DSKTSK 630
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGSIAYVPQVP 681
L+ ++L +P GSLVA++G G GK+SL++++LGE L+H S+ GS+AYVPQV
Sbjct: 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE--LSHAETSSVVIRGSVAYVPQVS 688
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
WI + T+R+NILFG +++ + Y + L D+ L+ G D+ IGE+GVN+SGGQ+ R
Sbjct: 689 WIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAAD 801
+++ARAVY SDIY+ DD LSA+DA VA + ++ M + KTR+L T+ + + D
Sbjct: 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVF-DSCMKDELKGKTRVLVTNQLHFLPLMD 807
Query: 802 MVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ-KQEMRTNASSANK-----Q 855
++++ +G +K G+ A+L+ SG + + M QE+ TN + K
Sbjct: 808 RIILVSEGMIKEEGTFAELS---KSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864
Query: 856 ILLQEKDVVSVSDDAQE---IIEVEQRKEGRVELTVYKNYAK-FSGWFITLVICLSAILM 911
I + E+++ S + +++ E+R+ G + V Y K G ++ +++ + +
Sbjct: 865 IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTT 924
Query: 912 QASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 971
+ R + WLS W D S+ YS FY+VV + +T +F SL AA
Sbjct: 925 EVLRVSSSTWLSIWTDQ--STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAA 982
Query: 972 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIA 1031
++H+ +L I+ AP+LFF P GR++NRFS D+ ID ++ ++N+ + LL
Sbjct: 983 KRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042
Query: 1032 VVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTI 1091
++ V L ++P ++ +Y+STSRE+RRLDSV+RSPIYA F E LNG S+I
Sbjct: 1043 ALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSI 1102
Query: 1092 RAFKSEDYFMAKFKEHVVLYQ-RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS-R 1149
RA+K+ D MAK + R + + +++ WL++RL+ L +I AT AV+ +
Sbjct: 1103 RAYKAYDR-MAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGN 1161
Query: 1150 GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209
A F++ +GL LSY I +LL L ++ E + S+ERV Y+D+P E
Sbjct: 1162 AENQAGFAS--TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAI 1219
Query: 1210 YQSLSP--DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL 1267
++ P WP +G I+F++V +RY+P LP LH ++F + +VG+VGRTGAGKSS+L
Sbjct: 1220 IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279
Query: 1268 NALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1327
NALFR+ + G+I++D ++ + DLR +++PQSP LF G++R N+DPF ++D
Sbjct: 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA 1339
Query: 1328 KIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
+W LE+ H+K+ ++ GL+ V E G +FSVGQRQL+ LARALL+ SK+L LDE T
Sbjct: 1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT 1399
Query: 1386 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
A+VD +T S++Q I E K T++ IAHR++T+++ D+IL+L G +
Sbjct: 1400 ASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 557 bits (1437), Expect = e-172
Identities = 305/869 (35%), Positives = 464/869 (53%), Gaps = 62/869 (7%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ 679
E E V+L VS+ +P+G L V+G GSGKS+LL S+L + ++ G + A SIAYVPQ
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQ 728
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
WI++ T+R NILF D ++ ++ L+ D++ + GG IGEKGVNLSGGQ+
Sbjct: 729 QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
AR++LARAVY D+Y+LDD LSA+DA V ++ +G + KTR+L TH V +
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPR 847
Query: 800 ADMVVVMDKGQVKWIGSSADLA-VSLYSGFW-------------STNEFDTSLHMQKQEM 845
AD VV + G+V++ GSSAD SLY+ + E +
Sbjct: 848 ADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAV 907
Query: 846 RTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG----WFIT 901
A ++ + D ++ A ++ E++ G V + Y Y +F G
Sbjct: 908 DHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFV 967
Query: 902 LVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAF 961
L L+ S + +WLS W +T S K S + YL V + + ++ F
Sbjct: 968 LATFAVTELVTVS---SGVWLSMW--STRS--FKLSAATYLYVY-LGIVLLGTFSVPLRF 1019
Query: 962 SFAFGSLR-AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNIL 1020
++ ++R + +H LL + + FFD TP GRILNRFS D+ ++D++LP L
Sbjct: 1020 FLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYL 1079
Query: 1021 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1080
L + +V S Q F L+ LVP ++Y +L FY S +RE+RR+ SV++SP++
Sbjct: 1080 LQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTL 1139
Query: 1081 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFI 1140
E L GS+TI A+ M + + + SY E A+ WL +R++ L+ +++ I
Sbjct: 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVI 1199
Query: 1141 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1200
A + VIG+ L AT GLV L+L+ A + L + E +M S+ER+L Y
Sbjct: 1200 ALIGVIGTM--LRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYT 1257
Query: 1201 D-VPQEEL--------------------CGYQSLSPDWPFQ--------GLIEFQNVTMR 1231
D VP E++ G + P P G + F+ V MR
Sbjct: 1258 DEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317
Query: 1232 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1291
Y+ LP L ++F I +VGIVGRTG+GKS++L R+ +CGG+I V+G I
Sbjct: 1318 YREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY 1377
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLET 1349
+R+LR +F+++PQ P LF+G++R N+DPF ++W+ LE ++E V E+ G+++
Sbjct: 1378 GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDS 1437
Query: 1350 FVKESGISFSVGQRQLICLARALLK-SSKVLCLDECTANVDAQTASILQNAISSECKGMT 1408
V E G ++SVGQRQL+C+ARALLK S + +DE TAN+D +Q + S T
Sbjct: 1438 RVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYT 1497
Query: 1409 VITIAHRISTVLNMDEILILDHGHLPHCG 1437
VITIAHR+ TV D+I+++DHG + G
Sbjct: 1498 VITIAHRLHTVAQYDKIIVMDHGAVAEMG 1526
|
Length = 1560 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 324 bits (834), Expect = e-102
Identities = 107/205 (52%), Positives = 149/205 (72%), Gaps = 1/205 (0%)
Query: 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665
+ ++DA+ +W + E+E + L ++L +PKG LVA++G VGSGKSSLL+++LGE+
Sbjct: 1 ISVEDASFTW-DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS 59
Query: 666 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
GS+ GSIAYV Q PWI +GTIR+NILFGK +D + Y + +KAC L+ D+ ++ GD+
Sbjct: 60 GSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
IGEKG+NLSGGQ+ R++LARAVY +DIY+LDD LSAVDA V R I N I+G + K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 786 TRILCTHNVQAISAADMVVVMDKGQ 810
TRIL TH +Q + AD +VV+D G+
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 320 bits (824), Expect = e-101
Identities = 112/213 (52%), Positives = 157/213 (73%), Gaps = 2/213 (0%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV++RY+P+LP L +I+F+I+ G +VGIVGRTG+GKSS+L ALFRL + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
IL+DG++I + DLR R +++PQ P LF G++R NLDPF D ++W LE+ +KE
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1341 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
VE++ GL+T V+E G + SVGQRQL+CLARALL+ SK+L LDE TA+VD +T +++Q
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
I K TV+TIAHR+ T+++ D IL+LD G
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 9e-89
Identities = 135/499 (27%), Positives = 251/499 (50%), Gaps = 17/499 (3%)
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
L++L + + L ++++ + + + L K++ P+ FFD+ G +++
Sbjct: 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLIS 113
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPFWFIYSKLQF 1057
R ++D+ + + + +L ++ + + L+G V+L + LLL++P + +
Sbjct: 114 RLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL---VLS 170
Query: 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYS 1117
SR+L R + + A E+L+G I+AF +ED + +F+E +R +
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 1118 ELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1177
L+ + LL++ + + T G + + Y +++ +
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSL----TVGALAAFILYLLRLLTPIL 286
Query: 1178 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP 1237
+ ++ + ER+ E +D E P G IEF+NV+ Y P
Sbjct: 287 QLGEVVSLLQRASAAAERLFELLDEEPEVE---DPPDPLKDTIGSIEFENVSFSYPGKKP 343
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
L DI+F+IE G +V IVG +G+GKS+++ L RL G+IL+DG++I + + LR
Sbjct: 344 V-LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402
Query: 1298 GRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKES 1354
R +V Q P LF G++R+N+ + D +I L+ + E + + G +T V E
Sbjct: 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGER 462
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1414
G++ S GQRQ + +ARALL++ +L LDE T+ +D +T +++Q+A+ KG T + IAH
Sbjct: 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
Query: 1415 RISTVLNMDEILILDHGHL 1433
R+ST+ N D I++LD+G +
Sbjct: 523 RLSTIKNADRIIVLDNGRI 541
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 1e-70
Identities = 148/516 (28%), Positives = 248/516 (48%), Gaps = 32/516 (6%)
Query: 933 QTKYSTSFYLV-VLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 991
ST L L + +F + L L+R + A R +++ ++ P+ +F+
Sbjct: 187 DASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246
Query: 992 QTPGGRILNRFSSDLYMIDDSLP-FILNILLANFVGLLGIAVVLSY-------VQVFFLL 1043
+ G I++R +L I + L IL +++ L+ +AV+ Y V L
Sbjct: 247 KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPL 305
Query: 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103
++ Q R +R+L + + ET+ G T++A +E F ++
Sbjct: 306 NVLITLIF----QPLLRRKTRKLIEESAE----QQSFLVETIKGIETVKALAAEPRFRSQ 357
Query: 1104 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLV- 1162
+ + + +L L+ LL +S + + G+ L + LV
Sbjct: 358 WDNRLAKQVNIGFKTEKLALILNTIKSLL--QQLSSVLIL-WFGAILVLEGELTLGQLVA 414
Query: 1163 --GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1220
LA + +PI L + F + + V+LER+ + +D P E+ G ++L Q
Sbjct: 415 FNMLAGYFISPITRLS-QLWTDFQQAK---VALERLGDILDTPPEQ-EGDKTLIHLPKLQ 469
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV+ RY P P L D++ I G +V IVGR+G+GKS++L L L G+
Sbjct: 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVK 1339
IL+DG+++ + + LR + V Q PFLF GS+R+N+ + + I +
Sbjct: 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
E +E + G +T V E G + S GQRQ + LARALL K+L LDE T+ +D +T +I+
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
+ +G TVI IAHR+ST+ + D I++LD G +
Sbjct: 650 QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKI 685
|
Length = 709 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 2e-70
Identities = 94/217 (43%), Positives = 138/217 (63%), Gaps = 16/217 (7%)
Query: 1217 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1276
WP G IE +N+++RY P LP L +++F ++ G ++GIVGRTGAGKS+++ ALFR
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
G+I +DG++I P+ DLR ++PQ P LF G++R NLDPF D +I+ L
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
V E G++ S GQRQL+CLARALLK +VL LDE TA++D T +++
Sbjct: 119 --------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
Query: 1397 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
Q I E T++TIAHR+ T+++ D+IL++D G +
Sbjct: 165 QKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEV 201
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 260 bits (665), Expect = 3e-70
Identities = 160/514 (31%), Positives = 272/514 (52%), Gaps = 30/514 (5%)
Query: 937 STSFYLVVLCIFCMFNSFLTL--VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTP 994
TS Y + +S L L R L + ++H +L ++ AP+ +
Sbjct: 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMK 980
Query: 995 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1054
GRILNRF+ D+ +IDD LP L + + +LG V+S +Q + + +P I+
Sbjct: 981 AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIM 1040
Query: 1055 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRT 1114
L+ ++ TS++L++L+S +RSPI++ +L G TIRAF + YF F + + L+
Sbjct: 1041 LRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100
Query: 1115 SYSELTASLWLSLRLQLLAAFIISFIA-TMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1173
+ L+ W +R+ ++ F+ FIA T IG+ + G VG+ L+ A I+
Sbjct: 1101 WFLYLSTLRWFQMRIDII--FVFFFIAVTFIAIGTNQD------GEGEVGIILTLAMNIL 1152
Query: 1174 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE----------------LCGYQSLSPDW 1217
S L ++S + + M S+ RV +++D+PQEE + W
Sbjct: 1153 STLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCW 1212
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
P G ++ Q +T +Y + A L D++F++EGG +VG++GRTG+GKS++L+AL RL
Sbjct: 1213 PSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST- 1271
Query: 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1337
G+I +DG++ + ++ R F V+PQ F+F G+ R NLDP+ D +IW V E+
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVG 1331
Query: 1338 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
+K +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T I
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILD 1429
++ + TVI HR+ +L + L+++
Sbjct: 1392 IRKTLKQSFSNCTVILSEHRVEALLECQQFLVIE 1425
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 252 bits (644), Expect = 8e-68
Identities = 181/647 (27%), Positives = 305/647 (47%), Gaps = 83/647 (12%)
Query: 222 VMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPY 281
++ +G ++L+ D+ +P+ +L W + + NP L+ A+ + + +
Sbjct: 23 ILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82
Query: 282 ICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-------GYVLAIALGLTSILKSF 334
+ G+L ++ PLLL ++I S Y LA+ L L I+++
Sbjct: 83 VFYGILLYFGEATKAVQPLLLGRII-----ASYDPFNAPEREIAYYLALGLCLLFIVRTL 137
Query: 335 FDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAER--SEFSDGEIQTFMSVDT---DRT 389
F L L +++R ++ ++IY+K L +L+ R + S G++ + +S + D
Sbjct: 138 LLHPAIFGLHHLGMQMRIALFSLIYKKTL--KLSSRVLDKISTGQLVSLLSNNLNKFDEG 195
Query: 390 VNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKM 449
+ LA H W P Q+ + + L++ ++ GL ILL + + +K
Sbjct: 196 LALA---HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKR 252
Query: 450 MKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509
+ ER+ T EI+ +I+++K Y WE+ + R E+K TRK A+ +F++
Sbjct: 253 AGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELK--LTRKI--AYLRYFYS 308
Query: 510 TTPTLFSLFTFGLFALMGHQLDAAM----VFT----CLALFNSLISPLNSFPWVINGLID 561
+ FS F +++ + L + +FT C+ L ++ FP I D
Sbjct: 309 SA-FFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVT---RQFPGAIQTWYD 364
Query: 562 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW------ 615
+ +I ++ FL EYK LE +N V M + T SW
Sbjct: 365 SLGAITKIQDFLCKEEYK-TLE---------------YNLTTTEVEMVNVTASWDEGIGE 408
Query: 616 ------YCNNEEEQ----------------NVVLNQVSLCLPKGSLVAVIGEVGSGKSSL 653
N +Q VL +S L KG L+AV G GSGKSSL
Sbjct: 409 LFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSL 468
Query: 654 LNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713
L I+GE+ + G I SG I++ PQ WI+ GTI+DNI+FG +YD Y+ +KAC L+
Sbjct: 469 LMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLE 528
Query: 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
DI+L D +GE G+ LSGGQRAR++LARAVY +D+Y+LD + +D + I
Sbjct: 529 EDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588
Query: 774 SNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 589 ESCLC-KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 3e-63
Identities = 76/210 (36%), Positives = 113/210 (53%), Gaps = 39/210 (18%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF+NV+ Y L D++ TI+ G +V IVG +G+GKS++L L RL G+IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+DG+++ + + LR A VPQ PFLF G++R+N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
S GQRQ I +ARALL+ +L LDE T+ +D +T +++ A+ +
Sbjct: 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 1403 ECKGMTVITIAHRISTVLNMDEILILDHGH 1432
KG TVI IAHR+ST+ + D I++LD G
Sbjct: 142 LAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 7e-61
Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 4/214 (1%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV Y P L DINF+I+ G V IVG TGAGK++++N L R GQ
Sbjct: 1 GEIEFENVNFSYDEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-CHVK 1339
IL+DG++I + + LR VV Q FLF G++ +N+ N + K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+ + + G +T + E+G + S G+RQL+ +ARA+L+ K+L LDE T+N+D +T ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
A+ KG T I IAHR+ST+ N D+IL+LD G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 2e-59
Identities = 155/528 (29%), Positives = 259/528 (49%), Gaps = 36/528 (6%)
Query: 926 VDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985
+DT G + + + + +C+ + +S +R SF + R +++ L ++
Sbjct: 188 IDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQ 247
Query: 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFV---GLLGIAVVLSYVQVFFL 1042
+ FFD+ G + +R SSD + SL +N+LL N V GLLG + LS
Sbjct: 248 DLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307
Query: 1043 LLLVPFWFIYSK-LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1101
L+ +P F+ K Y+ S EL+ ++V+++ A E L+G T+R+F +E+
Sbjct: 308 LINLPLVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEA 363
Query: 1102 AKFK---EHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG---SRGNLPAT 1155
++FK E + + LW + L +L ++ + V+ S GNL +
Sbjct: 364 SRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL-VS 422
Query: 1156 FSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLS 1214
F L Y + + ++ + + + E+V EY+D P L G +L+
Sbjct: 423 F---------LLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLA 471
Query: 1215 PDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1272
P +GLIEFQ+V+ Y +P +P L + FT+ G V +VG +G+GKS++ L
Sbjct: 472 PLN-LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN 529
Query: 1273 LTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWS 1331
L GGQ+L+DG+ ++ L + A+V Q P LF GS+R+N+ D +I +
Sbjct: 530 LYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMA 589
Query: 1332 VLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ + + + G +T V E G S GQ+Q I +ARAL++ +VL LDE T+ +D
Sbjct: 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
Query: 1390 AQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
A+ +LQ S TV+ IAHR+STV D+IL+L G + G
Sbjct: 650 AECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 2e-56
Identities = 150/563 (26%), Positives = 259/563 (46%), Gaps = 50/563 (8%)
Query: 893 AKFSGWFITLVICLSAILM--QASRNGNDLWLSYWVDTTGSSQ--TKYSTSFYLVVLCI- 947
+ + L+I +A L A R D S SS +Y +V L +
Sbjct: 18 GRVLAALVALLITAAATLSLPYAVRLMIDHGFS-----KDSSGLLNRYFAFLLVVALVLA 72
Query: 948 ---FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1004
F L +R AV H +++ FFD+ G +++R ++
Sbjct: 73 LGTAARFYLVTWLGERVV---ADIRRAVFAH------LISLSPSFFDKNRSGEVVSRLTT 123
Query: 1005 DLYMIDDSLPFILNILLAN---FVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061
D ++ + L++ L N +G L + + S +LL VP + + F
Sbjct: 124 DTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPL--VLLPILLF--- 178
Query: 1062 TSRELRRL-----DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY 1116
R +R+L D ++ + YA ETL T++AF ED ++F V +
Sbjct: 179 -GRRVRKLSRESQDRIADAGSYAG--ETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR 235
Query: 1117 SELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1176
+ L+ + +L + I + +G+ + S G +G + YA + +
Sbjct: 236 QRIRTRALLTAIVIVL---VFGAIVGVLWVGAHDVIAGKMS-AGTLGQFVFYAVMVAGSI 291
Query: 1177 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KP 1234
G + E ++ + ER++E + + + P +G IEF+ V Y +P
Sbjct: 292 GTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARP 351
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
PA L +N T+ G V +VG +GAGKS++ L R G+IL+DG+++
Sbjct: 352 DQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPA 410
Query: 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETF 1350
+LR R A+VPQ P LF S+ +N+ + D D ++ + H E + A+ G +T+
Sbjct: 411 ELRARMALVPQDPVLFAASVMENIR-YGRPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1410
+ E G++ S GQRQ I +ARA+LK + +L LDE T+ +DA++ ++Q A+ + KG T +
Sbjct: 470 LGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTL 529
Query: 1411 TIAHRISTVLNMDEILILDHGHL 1433
IAHR++TVL D I+++D G +
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRI 552
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 5e-56
Identities = 135/510 (26%), Positives = 242/510 (47%), Gaps = 45/510 (8%)
Query: 942 LVVLCIFCMFNS--FLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
L VL C F S L+ V S + + + K++ PV FFD+ P G +L
Sbjct: 63 LAVLRGICSFVSTYLLSWV--------SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 1000 NRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056
+R + D + + +L+ +GL + + S+ +++++P L
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV------LS 168
Query: 1057 FFYRSTSRELRRLDS---VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1113
R S+ LRR+ S + ETL G ++ F + Y +F +R
Sbjct: 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR 228
Query: 1114 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1173
+ +A S QL+A+ ++ + + + + + T G + A I
Sbjct: 229 LAMKMTSAGSISSPITQLIASLALAVV--LFIALFQAQAGSL--TAG------DFTAFIT 278
Query: 1174 SLLGNF--LSSFTET----EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQN 1227
+++ L S T ++ + + E + +D P E+ G +++ +G +EF+N
Sbjct: 279 AMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIER---ARGDVEFRN 335
Query: 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1287
VT RY AL I+ IE G V +VGR+G+GKS+++N + R GQIL+DG +
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 1288 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAV 1345
+ + + LR + A+V Q LF ++ +N+ D +I L + ++ V+ +
Sbjct: 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKL 455
Query: 1346 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
GL+T + E+G+ S GQRQ + +ARALLK + +L LDE T+ +D ++ ++Q A+
Sbjct: 456 PLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL 515
Query: 1404 CKGMTVITIAHRISTVLNMDEILILDHGHL 1433
+G T + IAHR+ST+ D I+++D G +
Sbjct: 516 MQGRTTLVIAHRLSTIEKADRIVVMDDGRI 545
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 6e-54
Identities = 94/218 (43%), Positives = 139/218 (63%), Gaps = 2/218 (0%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G I+ ++ +RY+ +L L + I+ G +VGI GRTG+GKSS+ A FR+ I G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
I++DG++I P+ LR R +++ Q P LF GS+R NLDP D ++W LE +K
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1341 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
V+++ GL+ V E G +FSVGQRQL CLARA ++ S +L +DE TA++D T +ILQ
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHC 1436
+ + TV+TIAHR+ST+L+ D +L+L G L C
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVEC 235
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 1e-53
Identities = 122/568 (21%), Positives = 229/568 (40%), Gaps = 47/568 (8%)
Query: 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 345
LL +++ + PLL+ ++I L G L L + L L ++L S+ S+
Sbjct: 21 LLLLLSALLSLLLPLLIGRIIDALLADLGEL--LELLLLLLLLALLGGVLRALQSYLGSR 78
Query: 346 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN-LANSFHDAWSLPF 404
L K+ + + +++K L + L+ + G++ + ++ D + N ++ ++
Sbjct: 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSIL 138
Query: 405 Q-IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEI 463
IG + L + A + L + +L + + +A + ++ + E R E
Sbjct: 139 LLIGSLVLLFSLSWRLALILLLILPLLALVL-SLLARKSRKLSRRVREALGELNARLLES 197
Query: 464 LTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP----TLFSLFT 519
L+ IR +K +G E + + + + + +
Sbjct: 198 LSGIRVIKAFGAEDRELKRFEEANEELRR--ANLRASRLEALLAPLMLLLSSLGTVLVLA 255
Query: 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 579
G F ++ L + + L++P+ V++ L A + RL L
Sbjct: 256 LGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL------ 309
Query: 580 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSL 639
+ + + ++ ++ + S+ + VL +S + G
Sbjct: 310 -------DEEPEVEDPPDPLKDTIGSIEFENVSFSY-----PGKKPVLKDISFSIEPGEK 357
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSG 686
VA++G GSGKS+L+ +L T G I G I V Q P + SG
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417
Query: 687 TIRDNILFGKNYDPQSY-SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
TIR+NI G+ E LK I+ + G +GE+GVNLSGGQR RLA+A
Sbjct: 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RA+ I +LD+ SA+D + I + + +T ++ H + I AD ++V
Sbjct: 478 RALLRNPPILILDEATSALDTETEALIQDA--LKKLLKGRTTLIIAHRLSTIKNADRIIV 535
Query: 806 MDKGQVKWIGSSADLAV--SLYSGFWST 831
+D G++ G+ +L LY+ +
Sbjct: 536 LDNGRIVERGTHEELLAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 1e-53
Identities = 137/448 (30%), Positives = 215/448 (47%), Gaps = 59/448 (13%)
Query: 1008 MIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL-QFFYRSTSREL 1066
+ID LPF L LL + ++G +V + L+ +P + L Q + E
Sbjct: 267 LID--LPFALLFLLV--IAIIGGPLV------WVPLVAIPLILLPGLLLQRPLSRLAEES 316
Query: 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1126
R S R A E+L+G TI+A +E F ++ E V A
Sbjct: 317 MRE-SAQR---NAVLVESLSGLETIKALNAEGRFQRRW-EQTV--------AALARS--G 361
Query: 1127 LRLQLLAAFIISF------IATMAVI--G----SRGNLPATFSTPGLVG---LALSYAAP 1171
L+ + L+ +F + ++A++ G S G L + GL+ L+ AP
Sbjct: 362 LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGEL----TMGGLIACVMLSGRALAP 417
Query: 1172 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1231
+ L G L+ + + + + SL+ E M +P E G + L QG IEF+NV+
Sbjct: 418 LGQLAG-LLTRYQQAKTALQSLD---ELMQLPVERPEGTRFLHRP-RLQGEIEFRNVSFA 472
Query: 1232 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1291
Y AL +++ TI G +V I+GR G+GKS++L L L G +L+DG++I
Sbjct: 473 YPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI 532
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVE--AVG 1346
DLR VPQ P LF G+LRDN+ P+ DD +I E V E V G
Sbjct: 533 DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA--DDEEILRAAELAGVTEFVRRHPDG 590
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1406
L+ + E G S S GQRQ + LARALL+ +L LDE T+ +D ++ ++ + G
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG 650
Query: 1407 MTVITIAHRISTVLNM-DEILILDHGHL 1433
T++ + HR S +L++ D I+++D+G +
Sbjct: 651 KTLVLVTHRTS-LLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 3e-51
Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 3/212 (1%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+EF+NVT RY P L DI+ I G V +VG +G+GKS+++N + R + G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1341
+DG ++ + + LR + +V Q FLF ++ +N+ ++ + E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1342 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ + G +T + E G+ S GQRQ I +ARALLK +L LDE T+ +D ++ ++Q A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1400 ISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
+ K T IAHR+ST+ N D I++L+ G
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 5e-51
Identities = 130/487 (26%), Positives = 223/487 (45%), Gaps = 42/487 (8%)
Query: 969 RAAVKVHNTL----LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDS----LPFILNIL 1020
RAA KV +L L K+ F Q P G + ++ LP +
Sbjct: 66 RAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSA 125
Query: 1021 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1080
+ + +L ++ LL+ P ++ L + ++ +++R +
Sbjct: 126 IVPLL-ILIAIFFFNWAAALILLITAPLIPLFMIL-VGLAAKDASEKQFSALAR--LSGH 181
Query: 1081 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISF- 1139
F + L G T+RAF + + ++ + + T S+ LR+ L++ ++ F
Sbjct: 182 FLDRLRGLETLRAFGRTEATEERIRK-----DSEDFRKATMSV---LRIAFLSSAVLEFF 233
Query: 1140 ----IATMAV-IGSR----GNLPATFSTPGLVGLALS--YAAPIVSLLGNFLSSFTETEK 1188
IA +AV IG R G+L T GL L L+ + P+ LG+F F
Sbjct: 234 AYLSIALVAVYIGFRLLGEGDL--TL-FAGLFVLILAPEFFQPL-RDLGSF---FHAAAA 286
Query: 1189 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIE 1248
+ +++ ++ P + I +N++ RY P AL D+N TI+
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIK 345
Query: 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF 1308
G +VG +GAGKS++LN L G+I V+G+++ + R + + V Q+P+
Sbjct: 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405
Query: 1309 LFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLI 1366
LF G++R+N+ + + I + L++ + E V GL+T + E G S GQ Q +
Sbjct: 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465
Query: 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1426
LARALL + +L LDE TA++DA+T I+ A+ K TV+ I HR+ + D I+
Sbjct: 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIV 525
Query: 1427 ILDHGHL 1433
+LD+G L
Sbjct: 526 VLDNGRL 532
|
Length = 559 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 3e-50
Identities = 108/446 (24%), Positives = 204/446 (45%), Gaps = 18/446 (4%)
Query: 996 GRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW----FI 1051
G +LNR +D+ +D+ ++ + V + + + LS+ + LLL I
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
L FYR+ + L R+ + + FT+ + G + + F +ED + + +
Sbjct: 175 IPTL--FYRAGRKFGAHLAQ-GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231
Query: 1112 QRTSYSELTASLWLSLRLQLLAAFIISF-IATMAVIGSRGNLPATFSTPGLVGLALSYAA 1170
+ + + L L+A ++ + MA G L + L+ + +
Sbjct: 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALL-VIFAALE 290
Query: 1171 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1230
L +F + + S R+ + +D E + + +E +NV+
Sbjct: 291 AFEPLAP---GAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATT---GQALELRNVSF 344
Query: 1231 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1290
Y AL + N T+ G +V I+GR+G+GKS++L L G I ++G+ I +
Sbjct: 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404
Query: 1291 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEA--VGL 1347
+ LR +V+ Q LF G+LRDNL + + D ++W+ L++ +++ +E+ GL
Sbjct: 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL 464
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
T++ E G S G+R+ + LARALL + + LDE T +D T + + +G
Sbjct: 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGK 524
Query: 1408 TVITIAHRISTVLNMDEILILDHGHL 1433
T++ + HR+ + MD I++LD+G +
Sbjct: 525 TLLMVTHRLRGLERMDRIIVLDNGKI 550
|
Length = 573 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 176 bits (450), Expect = 5e-50
Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 28/226 (12%)
Query: 1223 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
IEF+NV+ RY PS P L ++ TI G V +VG +G GKS++++ L R G+
Sbjct: 1 IEFKNVSFRY-PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
IL+DG++I + +R LR + +V Q P LF+G++ +N+ + D +E
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR-YGKPDA----------TDEE 108
Query: 1341 EVEAV--------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
EA G +T V E G S GQ+Q I +ARALL++ K+L LDE T+
Sbjct: 109 VEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
+DA++ ++Q A+ KG T I IAHR+ST+ N D I +L +G
Sbjct: 169 ALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQ 214
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 9e-50
Identities = 143/518 (27%), Positives = 231/518 (44%), Gaps = 57/518 (11%)
Query: 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 998
+ ++ + IF L +R + FA + R V++ L ++ P+ +F+ G
Sbjct: 182 ALAMLAVAIFEPA---LGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDT 238
Query: 999 LNRF-----------SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047
+ R S L ++ D L F++ L F + L+ V + L+
Sbjct: 239 VARVRELEQIRNFLTGSALTVVLD-LLFVVVFLAVMFF----YSPTLTGVVIGSLVCYAL 293
Query: 1048 FWFIYSKLQFFYRSTSRELRRL--DSVSRSPIYASF-TETLNGSSTIRAFKSEDYFMAKF 1104
+ LR+ D RS SF E++ G TI+A +E F ++
Sbjct: 294 LSVFVGPI----------LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRW 343
Query: 1105 KEHVVLYQRTSYSELTASLWLSLRLQL---LAAFIISFIATMAVIGSRGNLPATFSTPG- 1160
+ Y S+ ++L L I+ + VIG G L +PG
Sbjct: 344 DRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIG--GAL-----SPGQ 396
Query: 1161 LVG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1217
LV LA P++ L F +T ++LER+ + ++ P E L+
Sbjct: 397 LVAFNMLAGRVTQPVLRL-AQLWQDFQQT---GIALERLGDILNSPTEP--RSAGLAALP 450
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
+G I F+N+ RY P P L ++N I+ G +GIVG +G+GKS++ L RL
Sbjct: 451 ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ 510
Query: 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSV-L 1333
GQ+LVDG+++ LR + VV Q LF S+RDN+ +P + I + L
Sbjct: 511 HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKL 569
Query: 1334 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
H G T V E G + S GQRQ I +ARAL+ + ++L DE T+ +D ++
Sbjct: 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
+++ + C+G TVI IAHR+STV D I++L+ G
Sbjct: 630 ALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 7e-48
Identities = 81/214 (37%), Positives = 123/214 (57%), Gaps = 8/214 (3%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF+NVT Y P P L D++FTI G +V IVG +G+GKS+IL LFR + G IL
Sbjct: 1 IEFENVTFAYDPGRPV-LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVK 1339
+DG +I + LR VVPQ LF ++ N+ P +++ + + +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEE--VIEAAKAAQIH 117
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+++ G +T V E G+ S G++Q + +ARA+LK+ +L LDE T+ +D T +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
A+ KG T I IAHR+ST++N D+I++L G
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 8e-48
Identities = 82/220 (37%), Positives = 121/220 (55%), Gaps = 7/220 (3%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I F++V RYKP P L +I+ I+ G VGIVGR+G+GKS++ + R G++L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1337
VDG ++ LR + VV Q LF S+RDN+ DP + + + L H
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+ E E G +T V E G S GQRQ I +ARAL+ + ++L DE T+ +D ++ +
Sbjct: 121 ISELPE--GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
+ C G TVI IAHR+STV N D I++++ G + G
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 4e-47
Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 1/195 (0%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG I++ Q WI+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
GTI++NI+FG +YD Y +KAC L+ DI+ D +GE G+ LSGGQRAR++LA
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILI 230
Query: 806 MDKGQVKWIGSSADL 820
+ +G + G+ ++L
Sbjct: 231 LHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 4e-47
Identities = 124/435 (28%), Positives = 202/435 (46%), Gaps = 55/435 (12%)
Query: 1019 ILLANFVGLLGIAVVL-----SYVQVFFLLLLVPF--WFIYSKLQFFYRSTSRELRRLDS 1071
++LA V L +A V S + + L+P I Q + ++ +
Sbjct: 125 LVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPIFMILIGWAAQ------AAARKQWAA 178
Query: 1072 VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTS--YSELTASLWLSLRL 1129
+SR + F + L G T++ F K +R+S Y E T + LR+
Sbjct: 179 LSR--LSGHFLDRLRGLPTLKLFGRA-------KAQAAAIRRSSEEYRERTMRV---LRI 226
Query: 1130 QLLAAFIISFIATMAV------IGSR---GNLPATFSTPGLVGLALSYAAPIVSL-LGNF 1179
L++ ++ AT++V IG R G+L GL L L AP L L
Sbjct: 227 AFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLA---TGLFVLLL---APEFYLPLRQL 280
Query: 1180 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL--SPDWPFQGLIEFQNVTMRYKPSLP 1237
+ + + + E + +D L G + +P +EF V++ Y P
Sbjct: 281 GAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS----LEFSGVSVAY-PGRR 335
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
AL ++FT+ G +V +VG +GAGKS++LN L G I V+G+ + + R
Sbjct: 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
Query: 1298 GRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETFVKE 1353
+ A VPQ PFLF G++ +N+ D D +I LE+ + E V A+ GL+T + E
Sbjct: 396 DQIAWVPQHPFLFAGTIAENIR-LARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1413
G S GQ Q + LARA L+ + +L LDE TA++DA+T + + A+ + +G TV+ +
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
Query: 1414 HRISTVLNMDEILIL 1428
HR++ D I++L
Sbjct: 515 HRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 1e-46
Identities = 137/570 (24%), Positives = 235/570 (41%), Gaps = 59/570 (10%)
Query: 294 IGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352
+ A PL +I K L S VLAI L L ++ ++ ++ ++ L +L
Sbjct: 169 LALATPLFSQIVIDKVLPDASRSTL-TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDL 227
Query: 353 SIMTIIYQKCLYVRLAERSEFSDGEIQT-FMSVDTDR---TVNLANSFHDAWSLPFQIGV 408
+ ++ L + L+ + S GEI + ++ R T ++ D L F +
Sbjct: 228 ELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIID---LLFALIF 284
Query: 409 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 468
+ K + LA L + + L+ T K++++ E+ E + I
Sbjct: 285 LAVMFLYSWKLTLIV-LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIE 343
Query: 469 TLKMYGWE-QIFSSW---LMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 524
T+K E + S W L K + K L+ + L + FG
Sbjct: 344 TVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL--ILWFGAIL 401
Query: 525 LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 584
++ +L + L ISP+ + A +++ RL L
Sbjct: 402 VLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL----------- 450
Query: 585 AANSPSYISNGLSNFN--SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 642
++P + + + ++ + + ++ V L +SL +P G VA+
Sbjct: 451 --DTPPEQEGDKTLIHLPKLQGEIEFENVS---FRYGPDDPPV-LEDLSLEIPPGEKVAI 504
Query: 643 IGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIR 689
+G GSGKS+LL +LG G I G + YV Q P++ SG+IR
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 690 DNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
+NI G +P+ + E ++A L I + G +GE G NLSGGQR RLALA
Sbjct: 565 ENIALG---NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RA+ I +LD+ SA+D + IL N + + +T I+ H + I +AD ++V
Sbjct: 622 RALLSKPKILLLDEATSALDPETEAIILQN--LLQILQGRTVIIIAHRLSTIRSADRIIV 679
Query: 806 MDKGQVKWIGSSADLAVS--LYSGFWSTNE 833
+D+G++ GS +L LY+ + E
Sbjct: 680 LDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 1e-45
Identities = 148/494 (29%), Positives = 239/494 (48%), Gaps = 63/494 (12%)
Query: 969 RAAVKVHNTLLTKIVNA----PVLFFDQTPGGRILNRFSSDLYMIDD-----------SL 1013
RAAV V L T +++A P+ FD P G++++R ++D +I D S
Sbjct: 91 RAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150
Query: 1014 PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVS 1073
I +L+A F L + L + +F +L+V IY Q + R +R
Sbjct: 151 ALIGAMLVAMF--SLDWRMALVAIMIFPAVLVV--MVIY---QRYSTPIVRRVRAY---- 199
Query: 1074 RSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS---LR-- 1128
+ I F E +NG S I+ F+ + A+F E + R+ Y +L L LR
Sbjct: 200 LADINDGFNEVINGMSVIQQFRQQ----ARFGERMGEASRSHYMARMQTLRLDGFLLRPL 255
Query: 1129 LQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTE--T 1186
L L +A I+ + + G FS G + + + YA +S LG E T
Sbjct: 256 LSLFSALILC--GLLMLFG--------FSASGTIEVGVLYA--FISYLGRLNEPLIELTT 303
Query: 1187 EKEM-----VSLERVLEYMDVPQEELCGYQSLSPDWPFQ-GLIEFQNVTMRYKPSLPAAL 1240
++ M V+ ERV E MD P++ Y + D P Q G I+ NV+ Y+ L
Sbjct: 304 QQSMLQQAVVAGERVFELMDGPRQ---QYGN--DDRPLQSGRIDIDNVSFAYRDDNLV-L 357
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
+IN ++ V +VG TG+GKS++ + L P+ G+I +DG + + LR
Sbjct: 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1358
A+V Q P + + N+ + ++W LE + E ++ GL T + E G +
Sbjct: 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1418
SVGQ+QL+ LAR L+++ ++L LDE TAN+D+ T +Q A+++ + T++ IAHR+ST
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLST 537
Query: 1419 VLNMDEILILDHGH 1432
++ D IL+L G
Sbjct: 538 IVEADTILVLHRGQ 551
|
Length = 592 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-45
Identities = 130/479 (27%), Positives = 225/479 (46%), Gaps = 49/479 (10%)
Query: 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVL 1034
L ++ PV FFD+ G +L+R + D + S L ++ A+ +GL +
Sbjct: 104 LFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163
Query: 1035 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLD---SVSRSPIYASFTETLNGSSTI 1091
S+ L+++ P + R S+ R + + + S + L G +
Sbjct: 164 SWQLSLILIVIAPI------VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEV 217
Query: 1092 RAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS-RG 1150
F ++ +F + ++ ++AS +QL+A+ ++F+ A S
Sbjct: 218 LIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMD 277
Query: 1151 NL-PATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209
L T + +AL P+ SL N + F ++ M + + + +D+ QE+ G
Sbjct: 278 TLTAGTITVVFSSMIAL--MRPLKSLT-NVNAQF---QRGMAACQTLFAILDLEQEKDEG 331
Query: 1210 YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1269
+ + +G IEF+NVT Y AL +INF I G V +VGR+G+GKS+I N
Sbjct: 332 KRVIER---AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANL 388
Query: 1270 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1329
L R I G+IL+DG ++ + + LR + A+V Q+ LF ++ +N I
Sbjct: 389 LTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN-----------I 437
Query: 1330 WSVLEKCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLK 1374
+ + +E++E GL+T + E+G+ S GQRQ I +ARALL+
Sbjct: 438 AYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497
Query: 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
S +L LDE T+ +D ++ +Q A+ K T + IAHR+ST+ DEIL+++ G +
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEI 556
|
Length = 582 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 9e-44
Identities = 81/217 (37%), Positives = 114/217 (52%), Gaps = 9/217 (4%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV+ Y AL +++ TI G +V I+GR G+GKS++L L L G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1337
+L+DG +I DLR VPQ LF G+LRDN+ P DD +I E
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILRAAELAG 118
Query: 1338 VKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V + V GL+ + E G S GQRQ + LARALL +L LDE T+ +D +
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
L+ + T+I I HR S +L++ D I+++D G
Sbjct: 179 LKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 4e-42
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 22/203 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--------------- 671
L+ +++ +P G L ++G+VG GKSSLL +ILGEM G +H S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 672 --GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
S+AY Q PW+L+ T+ +NI FG ++ Q Y AC+L DI L+ GD IGE
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ---KT 786
+G+NLSGGQR R+ +ARA+Y ++I LDD SA+D ++ ++ I+ LQ +T
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL--KFLQDDKRT 194
Query: 787 RILCTHNVQAISAADMVVVMDKG 809
+L TH +Q + AD ++ M G
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-41
Identities = 137/525 (26%), Positives = 229/525 (43%), Gaps = 85/525 (16%)
Query: 950 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1009
+ LT ++ + ++ AV + L I+ PV FF Q G I +R
Sbjct: 205 LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQ------ 258
Query: 1010 DDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK--------------L 1055
LN +A F+ L V + F LL+ +Y L
Sbjct: 259 -------LNDQVAEFLSGQLATTALDAVMLVFYALLM---LLYDPVLTLIGIAFAAINVL 308
Query: 1056 QFFYRSTSREL--RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1113
S R RRL + + + L T++A E F +++ YQ
Sbjct: 309 ALQLVSRRRVDANRRLQQDAGKLTGVAIS-GLQSIETLKASGLESDFFSRWAG----YQA 363
Query: 1114 TSYSELTASLWLSLRLQLLAAF--IISFIATMAVIG------SRGNLPATFSTPGLV--- 1162
L A L + Q+L +++ + + ++ G L + LV
Sbjct: 364 KL---LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQL----TIGMLVAFQ 416
Query: 1163 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQEELCGYQSLS-PDWPFQ 1220
L S+ P+ +L+G F + E E ++ L+ VL +D EE + S P
Sbjct: 417 SLMSSFLEPVNNLVG-FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1278
G +E +N+T Y P P + + + T++ G +V +VG +G+GKS+I +L + G
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA----KL--VAGLY 529
Query: 1279 ----GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWS 1331
G+IL DG+ P L A+V Q FLFEG++RDNL DP + D
Sbjct: 530 QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDA----D 584
Query: 1332 VLEKCH---VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
++ C + + + + G + + E G + S GQRQ + +ARAL+++ +L LDE T+
Sbjct: 585 LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATS 644
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
+D +T I+ + + +G T I +AHR+ST+ + DEI++L+ G
Sbjct: 645 ALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 3e-41
Identities = 81/218 (37%), Positives = 122/218 (55%), Gaps = 4/218 (1%)
Query: 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+G +EF +V+ Y S + D++F + G V IVG TGAGKS+++N L R+
Sbjct: 331 VKGAVEFDDVSFSYDNSRQG-VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1335
G+IL+DG +I LR AVV Q LF S+ DN+ P +++++ + +
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
H E + G +T V E G S G+RQ + +ARALLK +L LDE T+ +D +T +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
++ A+ KG T IAHR+STV N D IL+ D+G +
Sbjct: 510 VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRV 547
|
Length = 588 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-40
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 3/213 (1%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGD 59
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
I +DG++ + P++ R F V+PQ F+F G+ R NLDP+ D +IW V E+ +K
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1341 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T +++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1399 AISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
+ TVI HRI +L L+++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 4e-40
Identities = 119/438 (27%), Positives = 210/438 (47%), Gaps = 35/438 (7%)
Query: 1007 YMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF--LLLLVPFWFIYSKLQFFYRSTSR 1064
+++ + LP ++ I L +L + ++L + F I S R
Sbjct: 58 WILFNILPTLVEISLV--AVILWRVYGWWFALTTLVTVILYLLFTVIVS--------DWR 107
Query: 1065 -ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1123
+ RRL + + S A ++L T++ F +E+Y ++ + Y++ + + L
Sbjct: 108 TDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLL 167
Query: 1124 WLSLRLQLLAAFIISFIATMAVIG-SRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1182
L+ + + + + TM+ +G G L T G + + + L S
Sbjct: 168 VLNFGQTAIFSTGLRVMMTMSALGVEEGQL-----TVGDLVNVNALLFQLSIPLNFLGFS 222
Query: 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD----WPF-QGLIEFQNVTMRYKPSLP 1237
+ E + + +E++ + +DV E S +PD WP G + F NV+ Y P P
Sbjct: 223 YREIRQALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP 277
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
L+ I+FTI G V IVG +GAGKS+IL LFR + G I +DG +I + + LR
Sbjct: 278 I-LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 1298 GRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEA--VGLETFVKE 1353
+VPQ LF ++ N+ + D ++ + E + + +++ G +T V E
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIK-YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1413
G+ S G++Q + +AR +LK+ +L LDE T+ +D T +Q A+ G T + IA
Sbjct: 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIA 455
Query: 1414 HRISTVLNMDEILILDHG 1431
HR+ST+++ DEI++LD+G
Sbjct: 456 HRLSTIIDADEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 8e-40
Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 13/247 (5%)
Query: 1192 SLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGT 1251
SL LE ++ G + L+ + P IE +++ + P +NFT+ G
Sbjct: 323 SLVTFLETPLAHPQQ--GEKELASNDPVT--IEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1311
++ +VG +GAGK+S+LNAL P G + ++G+ + R + V Q+P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1312 GSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLI 1366
G+LRDN+ +P +D+ ++ LE V E + + GL+T + + SVGQ Q +
Sbjct: 437 GTLRDNVLLGNP-DASDE-QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1426
LARALL+ ++L LDE TA++DA + ++ A+++ + T + + H++ + D+I
Sbjct: 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 1427 ILDHGHL 1433
++ G +
Sbjct: 555 VMQDGQI 561
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 3e-39
Identities = 133/505 (26%), Positives = 234/505 (46%), Gaps = 50/505 (9%)
Query: 950 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1009
+ L+ ++ F R ++ + + + + P+ FF G I++RF+ +I
Sbjct: 207 IIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSII 266
Query: 1010 DDSLPFILNILL-ANFVGLLGIAVVLSYVQVFFLLLL-VPFWFIYSKLQFFYRSTSRELR 1067
D IL++ L + ++G+ +V + +F L LL +P +Y+ + ++ T +L
Sbjct: 267 DALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP---VYAVIIILFKRTFNKLN 323
Query: 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSE-------DYFMAKFKEHVVLYQRTSYSELT 1120
+ + + +S E LNG TI++ SE D + YQ+ +
Sbjct: 324 HDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383
Query: 1121 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL 1180
+ +L+ +I + V+ RG L +G +++ A LL FL
Sbjct: 384 ----IKAVTKLILNVVILWTGAYLVM--RGKLT--------LGQLITFNA----LLSYFL 425
Query: 1181 SSF-------TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYK 1233
+ + + V+ R+ E V E + + + G I +V+ Y
Sbjct: 426 TPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNL-NGDIVINDVSYSYG 484
Query: 1234 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293
L DI+ TI+ ++ IVG +G+GKS++ L G+IL++G ++ +
Sbjct: 485 YGSNI-LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543
Query: 1294 RDLRGRFAVVPQSPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVE--AVGL 1347
LR +PQ P++F GS+ +NL D+ IW+ E +K+++E +G
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE--IWAACEIAEIKDDIENMPLGY 601
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKG 1406
+T + E G S S GQ+Q I LARALL SKVL LDE T+N+D T I+ N ++ + K
Sbjct: 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK- 660
Query: 1407 MTVITIAHRISTVLNMDEILILDHG 1431
T+I +AHR+S D+I++LDHG
Sbjct: 661 -TIIFVAHRLSVAKQSDKIIVLDHG 684
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 9/228 (3%)
Query: 1212 SLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1269
SL+PD +G+++FQNVT Y P+ P L D++FT+ G +VG +G+GKS+++
Sbjct: 2 SLAPD-HLKGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVAL 59
Query: 1270 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DL 1327
L GGQ+L+DG I + L + ++V Q P LF SL+DN+ + +
Sbjct: 60 LENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI-AYGLQSCSFE 118
Query: 1328 KIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
+ +K H + A G +T V E G S GQ+Q + +ARAL+++ +VL LDE T
Sbjct: 119 CVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
Query: 1386 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
+ +DA++ +Q A+ + TV+ IAHR+STV D+IL+LD G +
Sbjct: 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 5e-38
Identities = 107/454 (23%), Positives = 194/454 (42%), Gaps = 66/454 (14%)
Query: 995 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL------------ 1042
G +L R +D +D + +++ V L+ A ++ + V +
Sbjct: 109 RGDLLGRLGAD---VDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLL 165
Query: 1043 -LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1101
+ P + + R+ + L RL R + A T+ L+G++ + A + +
Sbjct: 166 AGFVAPLVSLRAA-----RAAEQALARL----RGELAAQLTDALDGAAELVASGALPAAL 216
Query: 1102 AKFKEHVVLYQRTSYSELTA-----SLWLSLR--LQLLAAFIISFIATMAVIGSRGNL-- 1152
A+ + ELT + +L L LLAA + + G
Sbjct: 217 AQ-------VEEAD-RELTRAERRAAAATALGAALTLLAAGLA--VLGALWAGGPAVADG 266
Query: 1153 ---PATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209
P T + L+ LA A + L T + ER++E +D G
Sbjct: 267 RLAPVTLAVLVLLPLAAFEA---FAALPAAAQQLTRVRA---AAERIVEVLDAAGPVAEG 320
Query: 1210 YQSLSPDWPFQGL-IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1268
+ +E ++++ Y + P L ++ + G +V I+G +G+GKS++L
Sbjct: 321 SAPAAGAVGLGKPTLELRDLSAGYPGA-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLA 379
Query: 1269 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-----DPFHM 1323
L L G++ +DG+ + + ++R R +V Q LF+ ++R+NL D
Sbjct: 380 TLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDA--- 436
Query: 1324 NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
D ++W+ LE+ + + + A+ GL+T + E G S G+RQ + LARALL + +L L
Sbjct: 437 -TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 495
Query: 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHR 1415
DE T ++DA+TA L + + G TV+ I H
Sbjct: 496 DEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-38
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 26/219 (11%)
Query: 1223 IEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
I ++ + + L DIN + G V IVG G+GKSS+L+AL G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1336
+ V G A V Q P++ G++R+N+ PF D+ + V++ C
Sbjct: 61 SVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPF---DEERYEKVIKAC 104
Query: 1337 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
++ ++E + G T + E GI+ S GQ+Q I LARA+ + + LD+ + VDA
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 1395 -ILQNAISSECKGM-TVITIAHRISTVLNMDEILILDHG 1431
I +N I T I + H++ + + D+I++LD+G
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 8e-38
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 10/217 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE +N+T +Y A L ++F +E G G++G GAGK+++L L L G+I
Sbjct: 4 VIEVRNLTKKYGGDKTA-LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK-IWSVLEKCHVK 1339
LV G +++ P +R R VPQ P L+ ++R+NL+ F L + + ++
Sbjct: 63 LVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFAR---LYGLSKEEAEERIE 118
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E +E GLE + + S G +Q + +A ALL ++L LDE T+ +D ++ +
Sbjct: 119 ELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 1400 ISSECK--GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ K G+T++ H + + D ++IL+ G +
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215
|
Length = 293 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-36
Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 13/316 (4%)
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIALG 326
SL+R + A Y K+++D P+LL +KFL + G L + L
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLF 292
Query: 327 LTSILKSFFDTQYSFHLS-KLKLKLRSSIMTIIYQKCLYV--RLAERSEFSDGEIQTFMS 383
LT +++S ++ +++S + L+ RS++ +I++KC + + + + + G I MS
Sbjct: 293 LTQLIQSVCLHRF-YYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMS 351
Query: 384 VDTDRTVNLANSFHD----AWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 439
D +R NSF WS P + +++ LL V + + +A+ ++ +P+N I
Sbjct: 352 TDVER----INSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIM 407
Query: 440 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKY 499
A K+ K D R++ T E + IR K WE F + + R+ E+++L +
Sbjct: 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467
Query: 500 LDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGL 559
F TPTL F ++ L+GH+L +VF +AL L P PWV +
Sbjct: 468 ARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527
Query: 560 IDAFISIRRLTRFLGC 575
+ +SI+R++ FL C
Sbjct: 528 LQFLVSIKRISTFLEC 543
|
Length = 1560 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 64/204 (31%), Positives = 87/204 (42%), Gaps = 56/204 (27%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
VL VSL + G VA++G GSGKS+LL +L T G I G
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+IAYVPQ P++ SGTIR+NI
Sbjct: 71 LESLRKNIAYVPQDPFLFSGTIRENI---------------------------------- 96
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
LSGGQR R+A+ARA+ I +LD+ SA+D + IL + KT
Sbjct: 97 -------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA--LRALAKGKT 147
Query: 787 RILCTHNVQAISAADMVVVMDKGQ 810
I+ H + I AD ++V+D G+
Sbjct: 148 VIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 4e-36
Identities = 128/485 (26%), Positives = 206/485 (42%), Gaps = 89/485 (18%)
Query: 996 GRILNRFSSDLYMID--DSLPF-ILNILLANFVGLLGIAVVLSYVQV-------FFLLLL 1045
G +LNR +D +D D L +++ L+A V +L + + LS+ + LLLL
Sbjct: 117 GDLLNRLVAD---VDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLL 173
Query: 1046 VPFWFIYSKLQFFYR---STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMA 1102
+ L FYR ++L L + R TE L G + + F +ED +
Sbjct: 174 ---LLLLPLL--FYRLGKKPGQDLTHLRAQYRV----QLTEWLQGQAELTLFGAEDRYRQ 224
Query: 1103 KFK--EHVVLYQRTSYSELTASLWLSLRLQLLA-AFIISFIATMAVIGSRGNLP------ 1153
+ + E L + + LT LS L +LA + + +A G GN
Sbjct: 225 QLEQTEQQWLAAQRRQANLTG---LSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIA 281
Query: 1154 -------ATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1206
A F V A + LG ++S R+ E + Q+
Sbjct: 282 LFVFAALAAFEALMPVAGAFQH-------LGQVIAS----------ARRINEITE--QKP 322
Query: 1207 LCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI 1266
+ + S Q + NV+ Y L ++ I+ G +V ++GRTG GKS++
Sbjct: 323 EVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTL 382
Query: 1267 LNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHM 1323
L L R G+IL++G I + LR +VV Q LF +LRDNL P
Sbjct: 383 LQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--N 440
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGLETFVK----------ESGISFSVGQRQLICLARALL 1373
D + VL++ VGLE ++ E G S G+++ + +ARALL
Sbjct: 441 ASDEALIEVLQQ---------VGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491
Query: 1374 KSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
+ +L LDE T +DA+T IL+ ++ + TV+ I HR++ + D I ++D+G
Sbjct: 492 HDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ 550
Query: 1433 LPHCG 1437
+ G
Sbjct: 551 IIEQG 555
|
Length = 574 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 7e-35
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 40/210 (19%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NV+ RY + P L +++F+IE G + I+G +G+GKS++ + L G++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+DG +I +L +PQ LF GS+ +N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
S GQRQ + LARAL + ++L LDE +++D + L AI++
Sbjct: 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 1403 -ECKGMTVITIAHRISTVLNMDEILILDHG 1431
+ G T I IAHR T+ + D IL+L+ G
Sbjct: 142 LKAAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-34
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 31/243 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ L+ ++L + G L A++G G+GKS+LLN +LG + T G I +G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGD 723
I++V Q P++ +GTIR+NIL + P + E + A + V G D
Sbjct: 391 EAWRKQISWVSQNPYLFAGTIRENILLAR---PDASDEEIIAALDQAGLLEFVPKPDGLD 447
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
IGE G LSGGQ RLALARA+ + + +LD+ + +DA+ + IL +
Sbjct: 448 TV-IGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA--LQELAK 504
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ 843
QKT ++ TH ++ + AD +VV+D G++ G+ +L +L Q++
Sbjct: 505 QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL--------SEKQGLYANLLKQQE 556
Query: 844 EMR 846
R
Sbjct: 557 GRR 559
|
Length = 559 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-33
Identities = 139/510 (27%), Positives = 222/510 (43%), Gaps = 68/510 (13%)
Query: 955 LTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLP 1014
L ++R + SL+AAV + LL PV FF Q G + +R + I L
Sbjct: 198 LAVLRLETRMDASLQAAV--WDRLL----RLPVSFFRQYSTGDLASRAMG-ISQIRRILS 250
Query: 1015 -FILNILLANFVGLLGIAVVLSY------VQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1067
L LL+ LL + ++ Y V V L+ + + LQ R L
Sbjct: 251 GSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRK---ERRLL 307
Query: 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127
L I + +NG S +R +E+ A++ + + L L
Sbjct: 308 ELSG----KISGLTVQLINGISKLRVAGAENRAFARWAK-----------LFSRQRKLEL 352
Query: 1128 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPI--VSLLGNFLSS--- 1182
Q + + F A + V+ S L A + L G LS + + + G+F +
Sbjct: 353 SAQRIENLLTVFNAVLPVLTS-AALFA-AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQ 410
Query: 1183 FTETEKEMVSL----ERVLEYMDVPQEELCGYQSLSPD-WPFQGLIEFQNVTMRYKPSLP 1237
+ T ++++ ER ++ E D G IE VT RY+P P
Sbjct: 411 LSNTLISILAVIPLWERAKPILEALPE----VDEAKTDPGKLSGAIEVDRVTFRYRPDGP 466
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTP 1292
L D++ IE G V IVG +G+GKS+ L RL TP G + DG ++
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKST----LLRLLLGFETPE-SGSVFYDGQDLAGLD 521
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEA--VGL 1347
V+ +R + VV Q+ L GS+ +N+ P +++ W + E++ A +G+
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE---AWEAARMAGLAEDIRAMPMGM 578
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
T + E G + S GQRQ + +ARAL++ ++L DE T+ +D +T +I+ S E +
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE--SLERLKV 636
Query: 1408 TVITIAHRISTVLNMDEILILDHGHLPHCG 1437
T I IAHR+ST+ N D I +LD G + G
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 6e-33
Identities = 112/514 (21%), Positives = 200/514 (38%), Gaps = 80/514 (15%)
Query: 343 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 402
LS L+++L ++K + A + G++ + D D L N +
Sbjct: 90 LSALRVRL--------FEKLEPLSPALLLRYRSGDLLNRLVADVD---ALDNLYLRV-IA 137
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITI--------LLIPVNKWIANLIANATEKMMKQKD 454
P + + L + T F LA+ + L+IP + + Q
Sbjct: 138 PAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIP---TLFYRAGRKFGAHLAQGR 194
Query: 455 ERIR-RTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT 513
+R + + + L ++G E + + L T +S +K +
Sbjct: 195 AALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL----L 250
Query: 514 LFSLFT-FGLFALMGHQLD---------AAMVFTCLALFNSLISPLNSFPWVINGLIDAF 563
L + GL M Q+ A + A + + +I
Sbjct: 251 LIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIA-- 308
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 623
S RRL L + E + A+ +++ + ++ +Q
Sbjct: 309 -SARRLNDIL-----DQKPEVTFPDE--------QTATTGQALELRNVSFTY----PGQQ 350
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L +L L +G VA++G GSGKS+LL + G GSI +G
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 673 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGDMAY 726
+I+ + Q + SGT+RDN+ P + E L A V + ++ G +
Sbjct: 411 RETISVLTQRVHLFSGTLRDNLRLAN---PDASDEELWAALQQVGLEKLLESAPDGLNTW 467
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE G LSGG+R RLALARA+ H + +++LD+ +D R +L A++ H KT
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL--ALLFEHAEGKT 525
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ TH ++ + D ++V+D G++ G+ A+L
Sbjct: 526 LLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559
|
Length = 573 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 9e-33
Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 5/214 (2%)
Query: 1229 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288
Y + AL ++NFT++ G +GI G TG+GKS++L+ + R + G I + +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1289 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-- 1345
+ R R AVV Q+PFLF ++ +N+ + +I V V +++ +
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSEC 1404
G +T V E G+ S GQ+Q I +ARALL ++++L LD+ + VD +T IL N +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWG 498
Query: 1405 KGMTVITIAHRISTVLNMDEILILDHGHLPHCGC 1438
+G TVI AHR+S + EIL++ HGH+ G
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 10/215 (4%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E +N++ Y AL DI+ TI+ G V IVG G+GKS++L L L G++LV
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVK 1339
DG ++ +++LR + +V Q+P F ++ + + ++ + + E+ V+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEE--IEER--VE 116
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E +E VGLE S + S GQ+Q + +A L +L LDE TA +D L
Sbjct: 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 1400 ISS-ECKGMTVITIAHRISTVLN-MDEILILDHGH 1432
+ + +G T+I + H + +L D +++L+ G
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 4e-32
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 56/211 (26%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E +N++ RY AL +++ T++ G V +VG G+GKS++L A+ L G+IL+
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1343
DG +I P+ +LR R VPQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ-------------------------------------- 80
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
S GQRQ + LARALL + +L LDE T+ +D + L +
Sbjct: 81 --------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 1404 C-KGMTVITIAHRISTVLN-MDEILILDHGH 1432
+G TVI + H D +++L G
Sbjct: 127 AEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-32
Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 37/211 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ NV+ Y L +++ ++ G ++ ++GR+G+GKS++L L G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+DG+ + + + L +V+ Q P+LF+ +LR+NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
G FS G+RQ + LAR LL+ + ++ LDE T +D T L + I
Sbjct: 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
Query: 1403 ECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
K T+I I H ++ + +MD+IL L++G +
Sbjct: 144 VLKDKTLIWITHHLTGIEHMDKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ VL +SL +P G VA++G GSGKS+L+N I + G I G
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT 70
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q ++ + T+ +NI +G+ + E +A I + G
Sbjct: 71 LASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ- 784
IGE+GV LSGGQR R+A+ARA+ I +LD+ SA+D + R + A+ +++
Sbjct: 131 VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV-QAAL--ERLMKN 187
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T + H + I AD +VV++ G++ G+ +L
Sbjct: 188 RTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEEL 223
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-31
Identities = 47/275 (17%), Positives = 103/275 (37%), Gaps = 12/275 (4%)
Query: 898 WFITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFYL-VVLCIFCMFNSFL 955
+ L++ + L+ L L ++D + + S+ L ++L + L
Sbjct: 4 AILLLILAGATALVFP------LLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLL 57
Query: 956 TLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPF 1015
+ R ++ LL +I+ P+ FFD G + +R ++D+ I D L
Sbjct: 58 LQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGD 117
Query: 1016 ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRS 1075
L + + ++G +V+ Y L+L+ + L R+L R + + +
Sbjct: 118 KLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYA 177
Query: 1076 PIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1135
+ E+L+G T++AF E+Y + ++ + + ++ + + QL++
Sbjct: 178 KAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 1136 IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAA 1170
+ + G V LS
Sbjct: 238 SYALALWFGAYLVISG----GLSVGTVFAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-31
Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 4/216 (1%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G +EF+++T + + + D++F + G V IVG TGAGK++++N L R+ GQ
Sbjct: 333 GAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVK 1339
IL+DG++I LR A V Q LF S+R+N+ D +++ +
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+ + G +T V E G S G+RQ + +ARA+LK++ +L LDE T+ +D +T + ++
Sbjct: 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
NAI + K T IAHR+STV N D +L LD G L
Sbjct: 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRL 547
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPIC-- 1277
IE +++ + Y AL DI+ I G ++G +G GKS++L L RL P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1278 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
G++L+DG +I ++ V +LR R +V Q P F GS+ DN+ L++ + K
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAY-----GLRLHGIKLK 113
Query: 1336 CHVKEEVEA----VGLETFVKE--SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ E VE L VK+ + S GQ+Q +CLARAL +VL LDE T+ +D
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
Query: 1390 AQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHL 1433
+ + ++ I+ K T++ + H R++ D L +G L
Sbjct: 174 PISTAKIEELIAELKKEYTIVIVTHNMQQAARVA-----DRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+E+ VL ++ + G VA++G G+GK++L+N ++ G I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAY 726
I V Q ++ SGTI +NI G+ E K I + G
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE G NLS G+R LA+ARA+ I +LD+ S +D + + I + M +T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI--QEALEKLMKGRT 190
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGS 816
I+ H + I AD ++V+D G++ G+
Sbjct: 191 SIIIAHRLSTIKNADKILVLDDGKIIEEGT 220
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 28/215 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSI------HASG 672
+L +SL +P G VA++G G GKS++++ + GE++L I
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 673 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYIG 728
I V Q P + GTI +NI +GK E +A D +SL G D +G
Sbjct: 78 QIGLVSQEPVLFDGTIAENIRYGKPDATDE--EVEEAAKKANIHDFIMSLPDGYD-TLVG 134
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQK 785
E+G LSGGQ+ R+A+ARA+ I +LD+ SA+DA+ + + L A+ G +
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG-----R 189
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
T I+ H + I AD++ V+ GQV G+ +L
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL 224
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-30
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 16/197 (8%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L VS +P G VA++G G+GKS+LLN +LG + T GSI +G
Sbjct: 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 673 --SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
IA+VPQ P++ +GTI +NI + E L+ LD ++ + G IGE
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
G LSGGQ RLALARA + + +LD+ + +DA+ +L + +T +L
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL--EALRALAQGRTVLL 512
Query: 790 CTHNVQAISAADMVVVM 806
TH + + AD +VV+
Sbjct: 513 VTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-30
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 44/214 (20%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ RY AL DI+ T+E G G++G GAGK++++ + L G+I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
V G +I P +++ R +P+ P L+E ++R+NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
S G +Q + LA+ALL ++L LDE T+ +D ++ +
Sbjct: 96 ----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLR 139
Query: 1402 SECK-GMTVITIAHRISTVLNM-DEILILDHGHL 1433
K G T++ +H + + D + IL++G +
Sbjct: 140 ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-29
Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E +N++ Y L D++F+I G GI+G G+GKS++L L L G++
Sbjct: 2 MLEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRD--------NLDPFHMNDDLKIWSV 1332
L+DG +I + ++L + A VPQSP G ++ + +L F S
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF------GRPSK 113
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
++ V+E +E +GLE S G+RQ + +ARAL + + +L LDE T+++D
Sbjct: 114 EDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 1393 ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ + + G+TV+ + H ++ D +++L G +
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-29
Identities = 69/219 (31%), Positives = 102/219 (46%), Gaps = 22/219 (10%)
Query: 1224 EFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
E +++T+ Y P L D++F ++ G + IVG GAGKS++L A+ L G I
Sbjct: 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQS---PFLFEGSLRD----NLDPFHMNDDLKIWSVLE 1334
V G P+ R R VPQ F S+RD L H + S +
Sbjct: 57 RVFGK-----PLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG-HKG-LFRRLSKAD 109
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
K V E +E VGL S GQ+Q + LARAL++ +L LDE A VD +T
Sbjct: 110 KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE 169
Query: 1395 ILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHG 1431
+ + +GMT++ + H + VL D +L+L+
Sbjct: 170 DIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 9e-29
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
VL +S + G V ++G GSGKSSLL ++ + L+ GSI G
Sbjct: 14 PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL 73
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSE-----TLKACTLDVDISLMVG 721
I+ +PQ P + SGTIR N+ DP YS+ L+ L + + G
Sbjct: 74 HDLRSRISIIPQDPVLFSGTIRSNL------DPFGEYSDEELWQALERVGLKEFVESLPG 127
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
G + E G NLS GQR L LARA+ S I +LD+ ++VD + ++ I
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA-LIQKTIRE-A 185
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816
T + H + I +D ++V+DKG+V S
Sbjct: 186 FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 26/227 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E + ++ Y AL D++ T+E G + ++G +G GK+++L + L G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLEKC 1336
+DG ++ P R +V Q LF P H+ ++ LK+ V +
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALF---------P-HLTVAENIAFGLKLRGVPKAE 106
Query: 1337 H---VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
V+E +E VGLE + S GQ+Q + LARAL + +L LDE + +DA+
Sbjct: 107 IRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166
Query: 1394 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
L+ + + G+T I + H L + D I +++ G + G
Sbjct: 167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 55/205 (26%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
+ VL VS + G +A+IG GSGKS+L ILG + T G + G+
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 674 -------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ Y+PQ + SG+I +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
SGGQR RL LARA+Y I +LD+ S +D + R + AI T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGAT 148
Query: 787 RILCTHNVQAISAADMVVVMDKGQV 811
RI+ H + +++AD ++V++ G+V
Sbjct: 149 RIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 24/209 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ L+ VSL + G VA+IG VGSGKS+LL + G T GS+ G
Sbjct: 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP 73
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY- 726
+I YVPQ + GT+RDNI G L+A L +
Sbjct: 74 ADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLD 131
Query: 727 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN--AIMGPHM 782
IGE+G LSGGQR +ALARA+ + I +LD+ SA+D + ++G
Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-- 189
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQV 811
KT I+ TH + D ++VMD G++
Sbjct: 190 --KTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-28
Identities = 69/212 (32%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ L +S L G +A+IG GSGKS+L I+G T GS+ G
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 673 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 725
I Y+PQ + GT+ +NI FG+N DP+ E K + ++ + L G D
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYD-T 446
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 783
IG G LSGGQR R+ALARA+Y + +LD+ S +D + A L+NAI
Sbjct: 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA---LANAIKALKAR 503
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
T ++ TH + D ++V+ G++ G
Sbjct: 504 GITVVVITHRPSLLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE +N++ RY AAL D++ IE G +V ++G G+GKS++L L L G++
Sbjct: 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1282 LVDGLNI-INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD---PFHMNDDLKIWSVLEK 1335
LVDGL+ + +LR + +V Q+P LF ++ D + +I
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER--- 118
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V E +E VGLE + + S GQ+Q + +A L ++L LDE TA +D +
Sbjct: 119 --VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 1396 LQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437
L + E G T+I + H + VL D +++LD G + G
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADG 221
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 5e-28
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 42/215 (19%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NV+ RY L+D++ IE G V ++G +G+GKS++L + L G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1283 VDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+DG L + + LR R +V Q LF H+ +VLE
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALF----------PHL-------TVLENI---- 97
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
A+GL SG GQ+Q + LARAL VL LDE T+ +D T ++ +
Sbjct: 98 ---ALGL------SG-----GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143
Query: 1401 SSECK--GMTVITIAHRISTVLNM-DEILILDHGH 1432
S G+TV+ + H + + D +++L G
Sbjct: 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 9e-27
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 43/240 (17%)
Query: 1222 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1275
L+E +N+T+ + A+ D++F +E G +GIVG +G+GKS++ AL L P
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1276 ICGGQILVDGLNIIN---TPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1331
I G++++DG +++ +R LRG R A++ Q P SL N + I
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM---TSL---------NPVMTIGD 112
Query: 1332 VLEKCH------VKEEVEAVGLETFVKESGIS-----------FSVGQRQLICLARALLK 1374
+ + + E +E ++ G+ S G RQ + +A AL
Sbjct: 113 QIREALRLHGKGSRAEARKRAVELL-EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL 171
Query: 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHG 1431
K+L DE T +D T + + + + + GM V+ I H + V + D ++++ G
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-26
Identities = 75/213 (35%), Positives = 104/213 (48%), Gaps = 32/213 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ L+ VSL + G VA+IG +GSGKS+LL +LG T GS+ G
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 723
+I YVPQ P + GT+RDNI G Y E L+A L + G D
Sbjct: 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLD 592
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
M IGE+G +LSGGQR +ALARA+ I +LD+ SA+D + L
Sbjct: 593 MQ-IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK-------DRL 644
Query: 784 Q-----KTRILCTHNVQAISAADMVVVMDKGQV 811
+ KT +L TH + D ++VMD G++
Sbjct: 645 KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 30/233 (12%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
L+E +N+++ + AL D++F+I+ G +G+VG +G+GKS++ A+ L G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1280 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWS 1331
I+ DG +++ + R +V Q P +L+P + + L+I
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS-------SLNPRMTIGEQIAEPLRIHG 113
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGIS------FSVGQRQLICLARALLKSSKVLCLDECT 1385
L K ++E + L + S GQRQ + +ARAL + K+L DE T
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 1386 ANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ +D AQ +L+ + E G+T++ I H + V + D + ++ G +
Sbjct: 174 SALDVSVQAQILDLLKK-LQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-26
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ VL +SL + G VA++G G GKS+LL + G I +G
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM--- 724
+I+ V Q + S T+RDN+L P + E L V + ++ D
Sbjct: 410 AALRQAISVVSQRVHLFSATLRDNLLLAA---PNASDEALIEVLQQVGLEKLLEDDKGLN 466
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
A++GE G LSGG++ RL +ARA+ H + + +LD+ +DA+ R IL ++ H
Sbjct: 467 AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL--ELLAEHAQN 524
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
KT ++ TH + + D + VMD GQ+ G+ +L
Sbjct: 525 KTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQEL 560
|
Length = 574 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 42/218 (19%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E +N+++ Y L D++ +IE G VGI+G GAGKS++L L L G+IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1343
DG ++ + ++L + A VPQ+ +E
Sbjct: 59 DGKDLASLSPKELARKIAYVPQA-----------------------------------LE 83
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISS 1402
+GL S G+RQ + LARAL + +L LDE T+++D A +L+ +
Sbjct: 84 LLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE-LLRR 142
Query: 1403 ECK--GMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ G TV+ + H ++ D +++L G + G
Sbjct: 143 LARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-26
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 21/216 (9%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ +L +S L G + +IG GSGKS+L ++G T GS+ G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 673 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 725
I Y+PQ + GTI +NI FG+ DP+ E + + ++ + L G D
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYD-T 464
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 783
IGE G LSGGQR R+ALARA+Y + +LD+ S +D++ A L+ AI+
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA---LAAAILAAKAR 521
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSAD 819
T ++ H A+++ D ++V+ G++ G +
Sbjct: 522 GGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 1223 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
+E +NV+ Y A AL DI+ ++E G V +VG +G GKS++L + L G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDN--LDPFHMNDDLKIWSVLE-KC 1336
+LVDG PV V Q L ++ DN L +L+ E +
Sbjct: 61 VLVDG-----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-----ELQGVPKAEARE 110
Query: 1337 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
+E +E VGL F SG G RQ + LARAL VL LDE + +DA
Sbjct: 111 RAEELLELVGLSGFENAYPHQLSG-----GMRQRVALARALAVDPDVLLLDEPFSALDAL 165
Query: 1392 TASILQN---AISSECKGMTVITIAHRISTVLNM-DEILIL 1428
T LQ I E G TV+ + H I + + D +++L
Sbjct: 166 TREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 6e-26
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
QG + + +T L I+F ++ G +GI+G +G+GKS++ L + P G
Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 1280 QILVDGLNIINTPVRDLRGRFA-VVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCH 1337
+ +DG ++ L GR +PQ LF+G++ +N+ F D K+
Sbjct: 392 SVRLDGADLRQWDREQL-GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 1338 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V E + + G +T + E G + S GQRQ I LARAL ++ LDE +N+D++ +
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1396 LQNAI-SSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
L AI +++ +G TV+ IAHR S + ++D+IL+L G +
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 15/220 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE +N+T+ Y L DI+ ++E G ++G GAGKS++L A+ L G+I
Sbjct: 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSP---FLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1335
+ G + R R R VPQ F +++D + + + +K
Sbjct: 62 KIFGKPV---RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW-FRRLNKKDK 117
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V E +E VG+E S GQ+Q + LARAL ++ +L LDE VD
Sbjct: 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177
Query: 1396 LQNAISSE-CKGMTVITIAHRISTVL-NMDEILILDHGHL 1433
+ + + +G TV+ + H + V+ D ++ L + HL
Sbjct: 178 IYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHL 216
|
Length = 254 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-25
Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 48/331 (14%)
Query: 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVIN---GLIDAFISIRRLTR-FLGC 575
G + +M +L + T AL + ++PL + +IN L A ++ RL +L
Sbjct: 399 TGAYLVMRGKLTLGQLITFNALLSYFLTPLEN---IINLQPKLQAARVANNRLNEVYLVD 455
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW-YCNNEEEQNVVLNQVSLCL 634
SE+ ++ ++ + ++N + + D + S+ Y +N +L+ +SL +
Sbjct: 456 SEFINKKKR-----TELNNLNGDIV-------INDVSYSYGYGSN------ILSDISLTI 497
Query: 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVP 681
S ++G GSGKS+L ++G G I +G I Y+PQ P
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQ 738
+I SG+I +N+L G + S E AC + DI M G + E+G ++SGGQ
Sbjct: 558 YIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
+ R+ALARA+ S + +LD+ S +D + I++N + ++ KT I H +
Sbjct: 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL---NLQDKTIIFVAHRLSVAK 673
Query: 799 AADMVVVMDKGQVKWIGSSADLAVSLYSGFW 829
+D ++V+D G++ GS +L +GF+
Sbjct: 674 QSDKIIVLDHGKIIEQGSHDELL--DRNGFY 702
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E + V+ + + L DIN ++E G V I+G +G GKS++L + L G++
Sbjct: 3 LLEIEGVSKSF-GGVEV-LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKC 1336
L+DG PV V Q L ++ DN L+ +
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE------ 109
Query: 1337 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
KE +E VGL F + SG G RQ + +ARAL K+L LDE +DA
Sbjct: 110 RAKELLELVGLAGFEDKYPHQLSG-----GMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1392 TASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILD 1429
T LQ+ + + TV+ + H + + + D +++L
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205
|
Length = 248 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VS +P G VA++G GSGKS++L + ++ GSI G
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75
Query: 673 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+I VPQ + + TI NI +G+ + + E KA + I G +GE+G
Sbjct: 76 AIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG 135
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+ LSGG++ R+A+ARA+ I +LD+ SA+D R I + + +T I+
Sbjct: 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA--LRDVSKGRTTIVIA 193
Query: 792 HNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFWS 830
H + I AD ++V+ G++ G+ +L LY+ W
Sbjct: 194 HRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 2e-24
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 25/228 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ +N+T YK A+ D++ + G G++G GAGK++ L L G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
++G + I T + R PQ LF+ ++R++L + + + + +KEE
Sbjct: 61 INGYS-IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR-----LKGLPKS-EIKEE 113
Query: 1342 VEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
VE +GL + + S G ++ + LA AL+ VL LDE T+ +D + +
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDE-------ILILDHGHLPHCGC 1438
+ I KG ++I H +MDE I I+ G L G
Sbjct: 174 DLILEVRKGRSIILTTH------SMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 22/213 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V+L+ +SL + G +V ++G GSGKS+L I + +G + G
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 673 -SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTL---DVDISLMVGGDMAYI 727
+ V Q + + +IRDNI DP S ++A L IS + G +
Sbjct: 76 RQVGVVLQENVLFNRSIRDNIALA---DPGMSMERVIEAAKLAGAHDFISELPEGYDTIV 132
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
GE+G LSGGQR R+A+ARA+ H I + D+ SA+D + I+ N M +T
Sbjct: 133 GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN--MHDICAGRTV 190
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I+ H + + AD ++VM+KG++ GS +L
Sbjct: 191 IIIAHRLSTVKNADRIIVMEKGRIVEQGSHDEL 223
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-24
Identities = 123/523 (23%), Positives = 204/523 (39%), Gaps = 60/523 (11%)
Query: 937 STSFYLVVLCIF-CMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPG 995
T L VL + +F L +R+F + ++ + +A + G
Sbjct: 43 PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRRGSGD-G 101
Query: 996 GRILNRF--------SSDLYMIDDS--LPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045
+ L L+ D+ +P L + +GI + V + L LL
Sbjct: 102 LQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFL-LHPWIGILALGGAVVLVGLALL 160
Query: 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1105
L+ ++ R DS R+ + I A M
Sbjct: 161 NN-RATKKPLKEATEASIRANNLADSALRN------------AEVIEA-------MGMMG 200
Query: 1106 EHVVLYQRTSYSELTASLWLSLRLQLLAAFIISF--IATMAVIGSRGNLPATFS-TPG-- 1160
+ R L+A S R +L+ F + V+G L TPG
Sbjct: 201 NLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMM 260
Query: 1161 -----LVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL-S 1214
LVG AL API +G + F+ + L +L + L
Sbjct: 261 IAGSILVGRAL---APIDGAIGGW-KQFSGARQAYKRLNELLANYPSRDPAM----PLPE 312
Query: 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
P +G + +NVT+ L I+F+++ G + I+G +G+GKS++ + +
Sbjct: 313 P----EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVL 1333
P G + +DG ++ +PQ LF G++ +N+ F N D KI
Sbjct: 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAA 428
Query: 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
+ V E + + G +T + G + S GQRQ I LARAL K++ LDE +N+D +
Sbjct: 429 KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488
Query: 1392 TASILQNAISS-ECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
L NAI + + +G+TV+ I HR S + +D+IL+L G +
Sbjct: 489 GEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 22/227 (9%)
Query: 1222 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+IE +NV+ + AL D++ I G GI+G +GAGKS++L + L
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 1279 GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1333
G + VDG ++ +R LR + ++ Q L ++ +N+ P L++ V
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP------LELAGVP 114
Query: 1334 -EKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ V E +E VGL S GQ+Q + +ARAL + K+L DE T+ +D
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1391 QTA-SILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+T SIL+ I+ E G+T++ I H + V + D + +LD G L
Sbjct: 175 ETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
|
Length = 339 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
L+ +N+++ Y AL++++ IE G +GIVG +G+GKS++ L L G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1280 QILVDGLNIIN-TPVRDLRGRFAVVPQSPFL-------FEGSLRDNLDPFHMND-DLKIW 1330
IL+DG + + +V Q P+ L + L P ++ +I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+L++ + L+ E S GQRQ I +ARAL+ K+L LDE T+ +D
Sbjct: 123 ELLDQVGLPPSF----LDRRPHE----LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 1391 QT-ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHL 1433
A IL N + K G+T + I+H ++ V +M D I ++D+G +
Sbjct: 175 SVQAQIL-NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220
|
Length = 252 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-24
Identities = 92/472 (19%), Positives = 167/472 (35%), Gaps = 70/472 (14%)
Query: 358 IYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQV 417
+Y++ LA R G++ + D D +L +P + + +
Sbjct: 92 VYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVR----VIVPAGVALVVGAAAVAA 147
Query: 418 KFAF--------VSGLAITILLIPVNKWIANLIANATEKMMKQ-KDERIRRTGEILTHIR 468
+GL + + P ++ A A E+ + + + E + + L
Sbjct: 148 IAVLSVPAALILAAGLLLAGFVAP---LVSLRAARAAEQALARLRGELAAQLTDALDGAA 204
Query: 469 TLKMYG--------WEQIFSSWL-MKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 519
L G E+ + R++ L + A +
Sbjct: 205 ELVASGALPAALAQVEEADRELTRAERRAAAATALGA-------ALTLLAAGLAVLGALW 257
Query: 520 FGLFALMGHQLD----AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 575
G A+ +L A +V LA F + P L + R+ L
Sbjct: 258 AGGPAVADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAERIVEVLDA 313
Query: 576 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 635
+ E A + ++D + + VL+ VSL LP
Sbjct: 314 AGPVAEGSAPAAGAV---------GLGKPTLELRDLSAGY-----PGAPPVLDGVSLDLP 359
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYVPQVPW 682
G VA++G GSGKS+LL ++ G + G + G ++ Q
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAH 419
Query: 683 ILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741
+ T+R+N+ + + + L+ L + + G +GE G LSGG+R R
Sbjct: 420 LFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQR 479
Query: 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LALARA+ + I +LD+ +DA+ A +L + + + +T +L TH+
Sbjct: 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--LSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-24
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 31/212 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ +SL + G +A++G G GK++LL I G G I G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 673 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
+I V Q P + T+ +NI FG + ++ V + ++
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN---R 126
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQ 784
Y E LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R L + L
Sbjct: 127 YPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKL-REELREELKELQRELG 181
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIG 815
T I TH+ + A++ AD + VM++G++ +G
Sbjct: 182 ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-24
Identities = 68/229 (29%), Positives = 101/229 (44%), Gaps = 35/229 (15%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1280
+IEF NV+ Y AALHD++ I G + + G +GAGK+++L L+ LTP GQ
Sbjct: 1 MIEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQ 58
Query: 1281 ILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS------ 1331
+ + G ++ R LR R VV Q F + D ++
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQD--------------FRLLPDRTVYENVALPL 104
Query: 1332 -VLEKC------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
V K V + VGLE S G++Q + +ARA++ S +L DE
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 1385 TANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHG 1431
T N+D + IL +G TVI H +S V + ++ILD G
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 17/205 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF+ V+ Y L DI+ EGG IVG +GAGKS+++ + RL G IL
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+DG++I V DLR + +V Q P LFEG+++DN++ M K V+ +
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYL 115
Query: 1343 EAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
VGL + + S G+ Q + +AR L + +VL LDE T+ +D + I++ I
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 1402 --SECKGMTVITIAHRISTVLNMDE 1424
+TVI I H NM++
Sbjct: 176 KLKNKMNLTVIWITH------NMEQ 194
|
Length = 241 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-24
Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 39/233 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I F+NV+ Y P AL D++F I G V + G +GAGKS++L ++ G+I
Sbjct: 1 MIRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1282 LVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1334
LV+G ++ R+ LR + VV Q F + D +V E
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQD--------------FRLLPDR---TVYENVAL 102
Query: 1335 --------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
++ V VGL+ + S G++Q + +ARA++ VL D
Sbjct: 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162
Query: 1383 ECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDE-ILILDHGHL 1433
E T N+D + I++ G TV+ H + V M +L L+ G L
Sbjct: 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-23
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+ + L V+ L G ++ + G GSGKS+LL+ I ++ G I
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384
Query: 669 -HASGSIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+A V Q P++ S T+ +NI G+ + Q + ++ DI + G
Sbjct: 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTE 444
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+GE+GV LSGGQ+ R+++ARA+ ++I +LDD LSAVD + IL N +T
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRT 502
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
I+ H + A++ A ++VM G + G+ LA
Sbjct: 503 VIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 1222 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+IE +NV+ Y AL D+N IE G V IVG +G+GKS++LN L L G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1280 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1333
++L++G ++ ++L R + V Q+ L ++ +N++ P +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA----- 115
Query: 1334 EKCHVKEE--VEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ E +E +GLE + + S S GQ+Q + +ARAL+ + K++ DE T N+D+
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 1391 QTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433
+TA + + K G T+I + H D ++ L G +
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ Y P AL D+N I G V I+G +GAGKS++L +L L G+IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1283 VDGLNIINTP---VRDLRGRFAVVPQSP------FLFEGSLRDNLDPFHMN---DDLKIW 1330
+G+ I +R LR ++ Q + E L L + + ++
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG--YTSTWRSLFGLF 120
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
S +K + +E VG+ + + S GQ+Q + +ARAL++ K++ DE A++D
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 1391 QTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGH 1432
++A + + + + G+TVI H++ D I+ L G
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225
|
Length = 258 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-23
Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAY 676
++ LP G +A++G G+GK+SLLN++LG + GS+ +G +++
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 677 VPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735
V Q P + GT+RDN+L G + + + L+ + + L+ G IG++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 795
GQ RLALARA+ + +LD+ +++DA + ++ A+ ++T ++ TH ++
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALN-AASRRQTTLMVTHQLE 545
Query: 796 AISAADMVVVMDKGQVKWIGSSADLA 821
++ D + VM GQ+ G A+L+
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELS 571
|
Length = 588 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 6e-23
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 21/207 (10%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SI 674
+ VL VS + G +A++G G+GKS+LL +ILG + T GSI G I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 675 AYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY--I 727
YVPQ + ++RD +L G + KA VD +L VG ++A I
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI 130
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
GE LSGGQ+ R+ LARA+ D+ +LD+ + VD + I + T
Sbjct: 131 GE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTI 185
Query: 788 ILCTHNVQAISA-ADMVVVMDKGQVKW 813
++ TH++ + D V+++++ V
Sbjct: 186 LVVTHDLGLVLEYFDRVLLLNRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 6e-23
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 39/238 (16%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +N+ Y S L ++ T+ G V ++GR GAGK+++L + L P G I
Sbjct: 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1283 VDGLNIINTPVRDL--RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
DG +I P + G VP+ +F ++ +NL L + K
Sbjct: 59 FDGRDITGLPPHERARAG-IGYVPEGRRIFPELTVEENL--------LLGAYARRRAKRK 109
Query: 1340 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA-- 1386
+E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 110 ARLERV-YELFPRLKERRKQLAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSEGL 163
Query: 1387 --NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGCAAA 1441
+ + ++ + E G+T++ + L + D +L+ G + G AA
Sbjct: 164 APKIVEEIFEAIR-ELRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 8e-23
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 12/223 (5%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE + +T + L ++ + G + I+G +G+GKS++L + L G++L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1283 VDGLNI---INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCH 1337
+DG +I + LR R ++ QS LF+ ++ +N+ P + L + E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-- 116
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
V E++EAVGL S G ++ + LARAL ++L DE TA +D + ++
Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1398 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ I S + G+T I + H + T + D I +L G + G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-23
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 22/212 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L+ ++L + G VA++G G+GKS+L +L G I G
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 673 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETL----KACTLDVDISLMVGGDMAYIG 728
+A VPQ P + + ++ +NI +G+ P + E + +A IS + G Y+G
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGR---PDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
E+GV LSGGQR R+A+ARA+ + I +LD+ SA+DA+ + ++ A+ M +T +
Sbjct: 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE-SEQLVQQALETL-MKGRTTL 529
Query: 789 LCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ H + + AD +VVMD+G++ G+ A+L
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
VL VS L G + A++G GSGKS+++ + G + G
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 674 -IAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
++ V Q P + + +++DNI +G + E + IS + G +GEKG
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG 148
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ + + A+ ++T ++
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQALYDWPE-RRTVLVIA 206
Query: 792 HNVQAISAADMVVVMDKGQV 811
H + + AD ++V+D G++
Sbjct: 207 HRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-22
Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 35/252 (13%)
Query: 1222 LIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1272
L+ +N++ RY A+ D++F + G +G+VG +G+GKS++ L
Sbjct: 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339
Query: 1273 LTPICGGQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHM 1323
L P G I+ DG ++ T +R LR R +V Q P+ SL D L +P +
Sbjct: 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY---SSLNPRMTVGDILAEPLRI 396
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
+ + V E +E VGL F+ S GQRQ + +ARAL K+L LD
Sbjct: 397 HGGGS--GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454
Query: 1383 ECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
E + +D AQ ++L++ G+T + I+H ++ V + D + ++ G + G
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512
Query: 1438 ----CAAAPNGP 1445
P P
Sbjct: 513 PTEKVFENPQHP 524
|
Length = 539 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 36/208 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------I 674
VL ++L + KG VA++G G GKS+LL I G T G + G I
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDI 74
Query: 675 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG----GDMA 725
YV Q +PW+ T+ DN+ G +S +E + ++ L +VG D
Sbjct: 75 GYVFQEDALLPWL---TVLDNVALGLELRGKSKAEA-RERAKEL---LELVGLAGFED-K 126
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y + LSGG R R+A+ARA+ + +LD+ A+DA R L + ++ + ++
Sbjct: 127 YPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT-REELQDELL--RLWEE 179
Query: 786 TR---ILCTHNVQ-AISAADMVVVMDKG 809
TR +L TH+V A+ AD VVV+
Sbjct: 180 TRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 48/222 (21%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------ 672
L +SL + +G VA++G G GKS+LL I G T G + G
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP 71
Query: 673 --SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSET-------LKACTLDVDISLM 719
YV Q +PW+ T+ DN+ G +E L+ L
Sbjct: 72 GPDRGYVFQQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLS------ 122
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G + AY + LSGG R R+ALARA+ D+ +LD+ SA+DA + +
Sbjct: 123 -GFENAYPHQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDAL------TREQLQ 171
Query: 780 PHML------QKTRILCTHNV-QAISAADMVVVMDK--GQVK 812
+L KT +L TH++ +A+ AD VVV+ G++
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 2e-22
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 24/228 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ Y P+ AL D++ +I G V ++G +GAGKS++L L L G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1283 VDGLNIINTP---VRDLRGRFAVVPQSPFLFE----------GSL--RDNLDPFHMNDDL 1327
+DG +I +R LR + ++ Q L E G L R
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSL-----F 114
Query: 1328 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
++ EK +E VGL + S GQ+Q + +ARAL++ K++ DE A+
Sbjct: 115 GLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 1388 VDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGH 1432
+D ++ + + + +G+TVI H++ D I+ L G
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NV + L D+N IE G V ++G +G GKS++L + L G+IL
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
+DG ++ + P RG A+V Q+ L+ ++ +N+ F + + ++K VKE
Sbjct: 62 IDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIA-FGLKLRGVPKAEIDK-RVKEV 117
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL--QNA 1399
+ +GLE + + S GQRQ + LARAL++ KV LDE +N+DA+ ++ +
Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177
Query: 1400 ISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
E G T I + H + + D I++++ G + G
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVG 216
|
Length = 338 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 3e-22
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF NVT Y P+ AAL IN +I G V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1283 VDGLNIINTPVRD---LRGRFAVVPQ-SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
V+G ++ + R LR + VV Q L + ++ +N+ F + + K V
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV-AFALEVTGVPPREIRK-RV 117
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E VGL + S G++Q + +ARA++ S +L DE T N+D T + N
Sbjct: 118 PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 1399 AI-SSECKGMTVITIAHRISTVLNMDE-ILILDHGHL 1433
+ G TV+ H V ++ L+ G L
Sbjct: 178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-22
Identities = 115/446 (25%), Positives = 192/446 (43%), Gaps = 67/446 (15%)
Query: 409 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 468
L LLY V + G+A + + + ++ +A ++ + + + TG ++ ++
Sbjct: 286 LLMLLYDPV-LTLI-GIAFAAINVLALQLVSRRRVDANRRLQQ---DAGKLTGVAISGLQ 340
Query: 469 ---TLKMYGWE-QIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT----- 519
TLK G E FS W + K L+ ++ L PTL +
Sbjct: 341 SIETLKASGLESDFFSRWA----GYQAKLLNAQQELGVLTQIL-GVLPTLLTSLNSALIL 395
Query: 520 -FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS-E 577
G +M QL M+ +L +S + P+N+ L + + RL L +
Sbjct: 396 VVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455
Query: 578 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 637
E E+A + S S LS + V +++ T + + E ++ N SL L G
Sbjct: 456 PLLEEEEAPAAGSEPSPRLSGY------VELRNITFGY---SPLEPPLIEN-FSLTLQPG 505
Query: 638 SLVAVIGEVGSGKSS-------LLNSILGEMM--------LTHGSIHASGSIAYVPQVPW 682
VA++G GSGKS+ L GE++ + + + S+A V Q +
Sbjct: 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL--ANSVAMVDQDIF 563
Query: 683 ILSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
+ GT+RDN+ +DP L A DV I+ GG A + E G NLSGG
Sbjct: 564 LFEGTVRDNLTL---WDPTIPDADLVRACKDAAIHDV-ITSRPGGYDAELAEGGANLSGG 619
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNV 794
QR RL +ARA+ I +LD+ SA+D + + I N L++ T I+ H +
Sbjct: 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN-------LRRRGCTCIIVAHRL 672
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL 820
I D ++V+++G+V G+ +L
Sbjct: 673 STIRDCDEIIVLERGKVVQRGTHEEL 698
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 4e-22
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ VS + G + ++G G+GK++LL + G + T G I G
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77
Query: 673 -SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMVGGD 723
I YVPQ P + T+R+N+ F K + E L+ L+ + V
Sbjct: 78 RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT- 136
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 782
LSGG + RL++A A+ H ++ +LD+ S +D + +R + +
Sbjct: 137 ----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLRELAKE 185
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T +L TH ++ A D V++++ G++ G+ +L
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224
|
Length = 293 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-22
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 20/230 (8%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
I+ +N+T Y P AL ++N IE G VG++G TG+GKS++ LN L + T
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-- 60
Query: 1277 CGGQILVDGLNIINTPV--RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSV 1332
G+I++DG++I + V D+R + +V Q P LFE ++ ++ +N L +
Sbjct: 61 -SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEI 119
Query: 1333 LEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ VK + VGL E + +S S GQ++ + +A + K+L LDE TA +D
Sbjct: 120 ENR--VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1391 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ + N I + MT+I ++H + V + D I++++ G G
Sbjct: 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227
|
Length = 287 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 6e-22
Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IEF+NV+ RY A+ D+N TIE G + ++G +G+GK++ L + RL G+I
Sbjct: 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DDLKIWSVL 1333
L+DG +I + +LR + V Q LF P H+ L W
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLF---------P-HLTVAENIATVPKLLGWDK- 107
Query: 1334 EKCH--VKEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
E+ E ++ VGL+ + S GQ+Q + +ARAL +L +DE +D
Sbjct: 108 ERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1390 AQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHL 1433
T LQ I K G T++ + H I L + D I ++D G +
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214
|
Length = 309 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 8e-22
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 1223 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
IE +N++ Y AL ++ +IE G V IVG +G+GKS++LN L L G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1281 ILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKIWS 1331
+ VDG +I ++L R V QS P L + +N++ P + K
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPK-KE 116
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
E+ E +E VGL + S GQ+Q + +ARAL K++ DE T N+D++
Sbjct: 117 RRERAE--ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 1392 TASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433
T + + K G T++ + H D I+ L G +
Sbjct: 175 TGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-21
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 43/189 (22%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
L+ VSL L G +VA++G GSGKS+LL +I G + T G I G +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG-----KDIAK 65
Query: 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
+ +R I Y PQ LSGGQR R+
Sbjct: 66 LPLEELRRRIG----YVPQ--------------------------------LSGGQRQRV 89
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAAD 801
ALARA+ D+ +LD+ S +D +L + +T I+ TH+ A AAD
Sbjct: 90 ALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAELAAD 148
Query: 802 MVVVMDKGQ 810
V+V+ G+
Sbjct: 149 RVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 11/277 (3%)
Query: 281 YICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG--YVLAIALGLTSILKSFFDTQ 338
+ LL ++ + PLLL + + L G+G LAI L +L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 339 YSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHD 398
+ +L ++R + + ++ L + ++ S GE+ + ++ D + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 399 AWSLPFQIGVALYLL--YTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDER 456
+ V +++ Y K V LAI LLI ++ +A + K K +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVL-LAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 457 IRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF---WATTPT 513
E L+ IRT+K +G E+ ++ E + K + F +
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELE--RYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 514 LFSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPL 549
++L FG + ++ L VF L+L L PL
Sbjct: 238 SYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 2e-21
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE +N++ + L I+ ++E G V I+G +G+GKS++L L L G I
Sbjct: 2 MIEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1282 LVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC---- 1336
VDG ++ + + LR + +V Q LF H+ +VLE
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFP----------HL-------TVLENVTLAP 102
Query: 1337 -HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
V K E VGL S GQ+Q + +ARAL KV+ DE
Sbjct: 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 1384 CTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGH 1432
T+ +D + + + + + GMT+I + H + + D ++ +D G
Sbjct: 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGK 213
|
Length = 240 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 22/224 (9%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ +N+T RY AL ++ T+ G G++G GAGK++++ L LTP G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC---HV 1338
+DG +++ P + LR R +PQ ++ ++R+ LD ++ + L+ V
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLD--YI-------AWLKGIPSKEV 107
Query: 1339 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
K V E V L K+ S S G R+ + +A+AL+ +L +DE TA +D +
Sbjct: 108 KARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERI 167
Query: 1395 ILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+N +S + VI H + V ++ +++ +L+ G L G
Sbjct: 168 RFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-21
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 27/231 (11%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+ +E +NV+ + A+ DI+ I+ G V ++G +G GK+++L + G
Sbjct: 3 KPALEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1333
+IL+DG +I + P + +V QS LF P HM ++ LK+ L
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALF---------P-HMTVEENVAFGLKVRKKL 108
Query: 1334 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+K +K VE VGLE F S GQ+Q + LARAL+ KVL LDE + +D
Sbjct: 109 KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 1390 AQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
A+ ++ + G+T + + H L M D I +++ G + G
Sbjct: 169 AKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-21
Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 27/227 (11%)
Query: 1222 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1276
+IE +NV+ + + AL D++ ++ G GI+GR+GAGKS+++ N L R T
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-- 58
Query: 1277 CGGQILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWS 1331
G +LVDG ++ +R R R ++ Q L ++ +N+ P L+I
Sbjct: 59 -SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP------LEIAG 111
Query: 1332 VLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
V K ++E V VGLE S GQ+Q + +ARAL + KVL DE T+
Sbjct: 112 V-PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1388 VDAQ-TASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHG 1431
+D + T SIL + G+T++ I H + V + D + +++ G
Sbjct: 171 LDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKG 217
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 6e-21
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 19/210 (9%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ V+L +P GSLVA++G GSGKS+LL I G G I +G
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRK 73
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
I +V Q + T+RDNI FG + + + + ++ + L+ + +G++
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIKARVEELLELV---QLEGLGDRYP 128
Query: 733 N-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
N LSGGQR R+ALARA+ + +LD+ A+DA+V + + S + T + T
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188
Query: 792 HN-VQAISAADMVVVMDKGQVKWIGSSADL 820
H+ +A+ AD +VVM G+++ IGS ++
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 7e-21
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ ++L+ VSL + G VA++G GSGKS+LL +LG GS+ G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ V Q ++SG+I +NI G E + L DI M G
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTV 581
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
I E G LSGGQR RL +ARA+ I + D+ SA+D + I+S ++ L+ T
Sbjct: 582 ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA-IVSESLER---LKVT 637
Query: 787 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
RI+ H + I AD + V+D G+V G+ +L
Sbjct: 638 RIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 8e-21
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L+ +SL + G VA++G GSGKS+L+N I G I G
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 673 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+A V Q + + TI +NI +G+ D L A + + G IGE
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
GV LSGGQR RLA+ARA+ + I +LD+ SA+D + R + A + M +T ++
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV--QAALERLMQGRTTLVI 524
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL 820
H + I AD +VVMD G++ G+ +L
Sbjct: 525 AHRLSTIEKADRIVVMDDGRIVERGTHNEL 554
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-20
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 52/205 (25%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
E++ VL +SL L +G +A++G GSGKS+LL + G++ G I G
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70
Query: 674 ------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I+ + Q P++ T+R+N+
Sbjct: 71 KALSSLISVLNQRPYLFDTTLRNNL----------------------------------- 95
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
G SGG+R RLALAR + + I +LD+ +D R +LS ++ + KT
Sbjct: 96 ---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS--LIFEVLKDKTL 150
Query: 788 ILCTHNVQAISAADMVVVMDKGQVK 812
I TH++ I D ++ ++ G++
Sbjct: 151 IWITHHLTGIEHMDKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-20
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 36/233 (15%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPI 1276
+I+ +NV+ Y S AL +++F I G V I+G G+GKS+ IL L +
Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-- 62
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--------------FLFEGSLRDNLDPFH 1322
G+I +DG+ I ++++R + ++ Q+P F E + P
Sbjct: 63 -SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKK 118
Query: 1323 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
M D I + +K VG+E ++ + + S GQ+Q + +A L + +++ D
Sbjct: 119 MKD--IIDDLAKK---------VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 1383 ECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
E T+ +D + ++ + + + T+I+I H + + D++++ G L
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKL 220
|
Length = 271 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-20
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 1264 SSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPF 1321
S++L + L G IL+DG + R LR R VV Q P LF E ++R+NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1322 HMNDDLK--IWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLARALLKSSKV 1378
+ + LE+ VGL F+ +E + S GQ+Q + +ARALLK K+
Sbjct: 61 LRDKEADARAEEALER---------VGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKL 111
Query: 1379 LCLDECTA 1386
L LDE TA
Sbjct: 112 LLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N+ + L I+ T++ G V I+G +G+GKS++L + L G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1283 VDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV-- 1338
+DGL + + + +LR + +V Q LF H+ +VLE +
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP----------HL-------TVLENITLAP 101
Query: 1339 -------KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
K E E VGL S GQ+Q + +ARAL + KV+ DE
Sbjct: 102 IKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161
Query: 1384 CTANVDAQTA-----SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
T+ +D + + A GMT++ + H + + D ++ +D G +
Sbjct: 162 PTSALDPELVGEVLDVMKDLAEE----GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-20
Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 9/216 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E ++T Y A+ D++F E G G++G GAGK+++L + L G++
Sbjct: 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1282 LVDGLNIINTPVRDLRGRFAVVP-QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+DG++ + P +R + V+ + + R+NL F + L K + E
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLS--RKEIKARIAE 116
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+ + L ++ FS G +Q + +ARAL+ +L LDE T+ +D +T + I
Sbjct: 117 LSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 1401 SSECK--GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ K G VI +H + V + D +++L G +
Sbjct: 177 -KQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV 211
|
Length = 245 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-20
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 8/215 (3%)
Query: 1222 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+I +T R++ A+ ++FT++ G G++G GAGK++ L L L G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1338
VDG +++ P + R R V S L++ + R+NL+ F LK + + +
Sbjct: 61 FATVDGFDVVKEP-AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR--L 117
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E + +G+E + FS G RQ + +ARAL+ VL LDE T +D L+
Sbjct: 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1399 AISSECK-GMTVITIAHRISTVLNM-DEILILDHG 1431
I G ++ H + V + D +++L G
Sbjct: 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-20
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ VL+ ++L + G + ++G GSGKS+L + HG + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL----DVDISLMVGG 722
+ V Q + S +IRDNI +P + + A L D L G
Sbjct: 527 AWLRRQMGVVLQENVLFSRSIRDNIALC---NPGAPFEHVIHAAKLAGAHDFISELPQGY 583
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
+ +GEKG NLSGGQR R+A+ARA+ I + D+ SA+D + I+ N M
Sbjct: 584 NTE-VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREIC 640
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFW 829
+T I+ H + + A D ++V++KGQ+ G +L LY+ W
Sbjct: 641 RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLW 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 5e-20
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 35/219 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
VL V+L + G V ++G G GKS+LL I G T G I G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 674 -IAYVPQVPWIL--SGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 723
IA V Q + L T+ +NI FG K + E K L+
Sbjct: 76 GIAMVFQ-NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE---------- 124
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
+ K + LSGGQR R+ALARA+ +++LD+ LS +DA++ R ++ + I H
Sbjct: 125 -HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL-RVLMRSEIKKLHER 182
Query: 783 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T I TH+ V+A++ AD +VVM+ G+++ +G+ +L
Sbjct: 183 LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 7e-20
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 17/216 (7%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ ++T Y L DI+ ++ G G +G GAGK++ + + L G+I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1339
DG + + R + ++P + NL +L++ + L K +
Sbjct: 59 FDGKSYQKN--IEALRRIGALIEAPGFY-----PNLTARE---NLRLLARLLGIRKKRID 108
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E ++ VGL+ K+ FS+G +Q + +A ALL + +L LDE T +D L+
Sbjct: 109 EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL 168
Query: 1400 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHL 1433
I S G+TV+ +H +S + + D I I++ G L
Sbjct: 169 ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+L+ +S +PKG + ++G GSGKS+LL + G + G + G
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 674 ----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL-KACTLDVDISL-MVGGDMAY 726
+AYVPQ P G T+ + +L G+ Y K V+ +L ++G + +
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGR-YPHLGLFGRPSKEDEEIVEEALELLG--LEH 130
Query: 727 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+ ++ V+ LSGG+R R+ +ARA+ + I +LD+ S +D +L
Sbjct: 131 LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGL 190
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 816
T ++ H++ A AD ++++ G++ G+
Sbjct: 191 TVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
A+ +NF + G G +G GAGK++ + L L G V G +++ P R +R
Sbjct: 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-RKVRR 66
Query: 1299 RFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
+VPQ + E + R+NL+ L E+ +E +E L +
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP-KDEAEE-RAEELLELFELGEAADRPVGT 124
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRI 1416
+S G R+ + +A +L+ VL LDE T +D +T + + I + + G+T++ H +
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 1417 STVLNM-DEILILDHGHL 1433
+ D I I+DHG +
Sbjct: 185 EEADKLCDRIAIIDHGRI 202
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 2e-19
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 53/204 (25%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
VL+ +SL + G +V ++G G+GKS+LL ++ G + + G I G
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 674 ----IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
IAYVPQ L+ +A++ +
Sbjct: 71 LARKIAYVPQA--------------------------LELL------------GLAHLAD 92
Query: 730 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
+ N LSGG+R R+ LARA+ I +LD+ S +D +L KT +
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 789 LCTHNV-QAISAADMVVVMDKGQV 811
+ H++ A AD V+++ G++
Sbjct: 153 MVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-19
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 51/224 (22%)
Query: 1222 LIEFQNVTMRY-------KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
L+E +N+ + K A+ ++F+I+ G +G+VG +G GKS++ + L
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G+IL +G +I ++ + + E
Sbjct: 64 EPTSGEILFEGKDIT--------------------------------KLSKEER----RE 87
Query: 1335 KCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT- 1392
+ V E +E VGL S GQRQ I +ARAL + K++ DE + +D
Sbjct: 88 R--VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ 145
Query: 1393 ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
A IL + E G+T + I+H +S V + D I ++ G +
Sbjct: 146 AQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKI 188
|
Length = 268 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-19
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 43/243 (17%)
Query: 1192 SLERVLEY---MDVPQEELCGYQSLSPDWPFQ----GLIEFQNVTMRYKPSLPAA---LH 1241
+L R+ E+ ++ Q + F I +N+++R P L
Sbjct: 355 TLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLR----TPDGQTLLS 410
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301
++NF + G ++ I G +GAGK+S+L AL L P G+I + P
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI--------SMPADS---ALL 459
Query: 1302 VVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG--- 1355
+PQ P+L +G+LR+ L + D ++ +VL K GL +
Sbjct: 460 FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV---------GLGDLAERLDEED 510
Query: 1356 ---ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1412
S G++Q + AR LL K + LDE T+ +D +T L + E TVI++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570
Query: 1413 AHR 1415
HR
Sbjct: 571 GHR 573
|
Length = 604 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-19
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673
L ++ +P G VA++G GSGKS++ N + + G I G
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKA----CTLDVDISLMVGGDMAYIGE 729
+A V Q + + TI +NI + + + S + +A +D I+ M G IGE
Sbjct: 419 VALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGE 476
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 787
GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I + A+ LQK R
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA-AL---DELQKNRTS 532
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ H + I AD ++V++ G++ G+ A+L
Sbjct: 533 LVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 85.9 bits (214), Expect = 4e-19
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 35/193 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ L+ +SL + KG + ++G G+GK++L+ ILG + G I
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-------------- 57
Query: 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG---VNLSGGQR 739
+ GK D + E +K I + Y + LSGG +
Sbjct: 58 ---------KVLGK--DIKKEPEEVKR-----RIGYLPEEPSLYENLTVRENLKLSGGMK 101
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
RLALA+A+ H ++ +LD+ S +D + R + KT +L +H ++
Sbjct: 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAER 160
Query: 800 -ADMVVVMDKGQV 811
D V +++ G++
Sbjct: 161 LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 4e-19
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 32/234 (13%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E +N++ Y P+ AL +IN I G V I+G +GAGKS++L + RL G I
Sbjct: 1 MLEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1282 LVDGLNIINTPVRDLRG----------RFAVVPQSPFL---------FEGSLRDNLDPFH 1322
L++G +I + LR + ++ + L ++ + R L F
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1323 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
D + S LE+ VGL + S GQ+Q + +ARAL + ++ D
Sbjct: 120 EEDKERALSALER---------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 1383 ECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHL 1433
E A++D +T+ + + + K G+TVI H++ D I+ L G +
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-19
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 23/208 (11%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
VL +SL + KG + A+IG G+GKS+LL +ILG + + G I G
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKR 74
Query: 673 -SIAYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY 726
I YVPQ V T++D +L G+ + K VD +L VG D+
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD 134
Query: 727 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGE LSGGQ+ R+ LARA+ D+ +LD+ + VD + + + +
Sbjct: 135 RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK-EIYDLLKELRQEG 189
Query: 785 KTRILCTHNVQAISA-ADMVVVMDKGQV 811
KT ++ TH++ + A D V+ +++ +
Sbjct: 190 KTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 8e-19
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMML--------THGSIHA 670
VL ++ L G +VA++G GSGKS+ L G+++L H +H
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555
Query: 671 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQS-YSETLKACTLDVDISLMVGGDMAYIGE 729
+A V Q P + SG++R+NI +G P KA I G +GE
Sbjct: 556 Q--VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 787
KG LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ ++ + +R
Sbjct: 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC------EQLLQESRSRASRTV 667
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+L H + + AD ++V+ KG V +G+ L
Sbjct: 668 LLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
L+ ++L + G V ++G G GK++ L I G T G I+ G
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 673 --SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
IA V Q P + T+ DNI FG + E ++ A L ++
Sbjct: 71 DRDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE------ 121
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ K LSGGQR R+AL RA+ ++++D+ LS +DA++ R + +
Sbjct: 122 ---HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL-RVQMRAELKRLQ 177
Query: 782 M-LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
L T I TH+ V+A++ AD + VM+ GQ++ IG
Sbjct: 178 QRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 1e-18
Identities = 102/425 (24%), Positives = 169/425 (39%), Gaps = 92/425 (21%)
Query: 1083 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1142
E L G T+ ++ E + KF LY + L A+ SL + ++ FI++ A
Sbjct: 241 EALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI---LKANFMESLHIGMINGFILASYAF 297
Query: 1143 MAVIGSR---GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY 1199
G+R +L G + I LLG +S F T + L + EY
Sbjct: 298 GFWYGTRIIISDLSNQQPNNDFHG-----GSVISILLGVLISMFMLT----IILPNITEY 348
Query: 1200 MD-----------VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALH-DINFTI 1247
M + ++ L I+F+NV Y ++ D+NFT+
Sbjct: 349 MKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTL 408
Query: 1248 EGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1306
G VG +G GKS+IL + RL P G I+ D N+ + ++ R + VV Q
Sbjct: 409 TEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQD 468
Query: 1307 PFLFEGSLRDNL-------------------DPFHMNDDL-KIWSVLEKC---------- 1336
P LF S+++N+ D ++ K S KC
Sbjct: 469 PLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528
Query: 1337 -------HVKEEVEAV-----------------------GLETFVKESGISFSVGQRQLI 1366
+++ + + ET V + S GQ+Q I
Sbjct: 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588
Query: 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG---MTVITIAHRISTVLNMD 1423
+ARA++++ K+L LDE T+++D ++ ++Q I++ KG I IAHR+ST+ +
Sbjct: 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN-LKGNENRITIIIAHRLSTIRYAN 647
Query: 1424 EILIL 1428
I +L
Sbjct: 648 TIFVL 652
|
Length = 1466 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 1e-18
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 54/199 (27%)
Query: 1223 IEFQNVTMRYKPSLPAA---LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
IE +N+++ + P L D++F I+ G ++ I G +G GKSS+ AL L P G
Sbjct: 1 IELENLSL----ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS-VLEKCHV 1338
+I +PQ P+L G+LR+ L + W VL
Sbjct: 57 RI-----------GMPEGEDLLFLPQRPYLPLGTLREQL--------IYPWDDVL----- 92
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
S G++Q + AR LL K + LDE T+ +D ++ L
Sbjct: 93 --------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1399 AISSECKGMTVITIAHRIS 1417
+ G+TVI++ HR S
Sbjct: 133 LLKEL--GITVISVGHRPS 149
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-18
Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 42/243 (17%)
Query: 1222 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1275
L+E +N+++ + A+ ++F ++ G +GIVG +G+GKS + A+ L P
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 1276 -ICGGQILVDGLNIINTP---VRDLRGR-FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330
I GG+IL DG ++++ +R +RG+ A++ Q P +L+P D I
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPVMTIGDQ-IA 112
Query: 1331 SVLEKCHV---KEEVEAVGLETFVKESGIS------------FSVGQRQLICLARALLKS 1375
VL K+E + +E + GI S G RQ + +A AL +
Sbjct: 113 EVLRLHGKGLSKKEAKERAIELL-ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 1376 SKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDH 1430
K+L DE T +D AQ +L+ + E KG +I I H + V + D + ++
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKE-LQRE-KGTALILITHDLGVVAEIADRVAVMYA 229
Query: 1431 GHL 1433
G +
Sbjct: 230 GRI 232
|
Length = 316 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 3e-18
Identities = 54/159 (33%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH- 1337
G+IL+DG++I + ++DLR F++V Q P LF S+ +N+ +D V C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK--FGKEDATREDVKRACKF 1334
Query: 1338 --VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
+ E +E++ +T V G S S GQ+Q I +ARALL+ K+L LDE T+++D+ +
Sbjct: 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394
Query: 1394 SILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDH 1430
+++ I + T+ITIAHRI+++ D+I++ ++
Sbjct: 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-18
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 42/234 (17%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1278
+I ++++ RY + AL D++F++ G V IVG G+GKS++ LN L
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---A 61
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKIWSVLEK 1335
G I V G+ + V D+R + +V Q+P DN F + DD+ LE
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNP--------DN--QFVGATVQDDVAF--GLEN 109
Query: 1336 C---------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
V + + VG+E F+ S GQ+Q + +A L ++ LDE T+
Sbjct: 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
Query: 1387 NVDAQ-------TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
+D + T L+ KG+TV++I H + D +++++ G +
Sbjct: 170 MLDPRGRREVLETVRQLKEQ-----KGITVLSITHDLDEAAQADRVIVMNKGEI 218
|
Length = 279 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 42/238 (17%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IEF+NV+ + P+ LH+I+ I+ G V I+G +G+GKS++L + +L I G +
Sbjct: 1 MIEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1282 LVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC-- 1336
+VDGL +N P R +R +V Q +LF H+ + LE
Sbjct: 59 IVDGLK-VNDPKVDERLIRQEAGMVFQQFYLFP----------HL-------TALENVMF 100
Query: 1337 ---HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
V KEE E VGL S GQ+Q + +ARAL K++
Sbjct: 101 GPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
Query: 1382 DECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNMDEILI-LDHGHLPHCG 1437
DE T+ +D + +L+ +GMT++ + H I + LI +D G + G
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG 218
|
Length = 240 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 21/229 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
LIE + VT + L ++ + G + I+G +G+GKS++L + L G+I
Sbjct: 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1282 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1337
L+DG +I +L R R V+ Q LF ++ +N+ F + + K+ L +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV-AFPLREHTKLPESLIREL 124
Query: 1338 VKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
V ++E VGL + SG G R+ + LARA+ ++L LDE T+ +D
Sbjct: 125 VLMKLELVGLRGAAADLYPSELSG-----GMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1392 TASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+A ++ I + G+TVI + H + ++L + D + +L G + G
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 4e-18
Identities = 91/330 (27%), Positives = 145/330 (43%), Gaps = 40/330 (12%)
Query: 509 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 568
A+T ++ + G ++ +L V + N LI L+ I F + +
Sbjct: 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFIT---QIFEARAK 305
Query: 569 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 628
L F + + E+ A++P L N AV + T + Q V
Sbjct: 306 LEDFFDLEDSVFQREEPADAPE-----LPNVKG---AVEFRHIT---FEFANSSQGV--F 352
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIA 675
VS G VA++G G+GK++L+N + T G I G SIA
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412
Query: 676 YVPQVPWILSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
V Q + + +IR+NI G+ D + Y A D + G D +GE+G
Sbjct: 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNR 471
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV-ARWILSNAIMGPHMLQKTR--ILC 790
LSGG+R RLA+ARA+ + I +LD+ SA+D + AR + NAI L+K R +
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR--VKNAI---DALRKNRTTFII 526
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL 820
H + + AD+V+ +D+G++ GS +L
Sbjct: 527 AHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 31/218 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQ 679
V L+ VSL +P G LVA++G GSGK++LL I G G+I A+
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 680 VPWILSG-------TIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMAYIGEK 730
V ++ T+ DN+ FG P+S E + + L+ + ++ ++
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV---QLDWLADR 132
Query: 731 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMGPHML 783
LSGGQR R+ALARA+ + +LD+ A+DA+V RW+ L L
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH------DEL 186
Query: 784 QKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
T + TH+ +A+ AD VVVM+KG+++ +G+ ++
Sbjct: 187 HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VS + G + ++G G+GKS+L+ ++ + G I G
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 673 SIAYVPQVPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
S+ +PQ P + SGTIR N+ F + D + Y L+ + E G
Sbjct: 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY-GALR------------------VSEGG 123
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+NLS GQR L LARA+ + +LD+ +++D I + T +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI--QKTIREEFTNSTILTIA 181
Query: 792 HNVQAISAADMVVVMDKGQVKWIGS 816
H ++ I D ++VMD G+VK
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 7e-18
Identities = 62/210 (29%), Positives = 85/210 (40%), Gaps = 65/210 (30%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
Q VLN VSL + G +VA++G GSGKS+LL I G GSI G
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL 71
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
I V Q + T+ +NI G
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------- 100
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-----NAIMGPH 781
LSGGQ+ R+ALARA+ D+ +LD+ SA+D R + + A
Sbjct: 101 -------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA----- 148
Query: 782 MLQKTRILCTHNV-QAISAADMVVVMDKGQ 810
L T +L TH++ +A AD VVV+ G+
Sbjct: 149 QLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 7e-18
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 12/223 (5%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE N++ R+ AL D+N + G+ V ++G +G+GKS++L + L G+I
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
++G + RD + F V Q LF+ ++RDN+ F + + K K V+E
Sbjct: 59 LNGQDATRVHARDRKIGF--VFQHYALFKHLTVRDNI-AFGL-EIRKHPKAKIKARVEEL 114
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN--- 1398
+E V LE S GQRQ + LARAL +VL LDE +DA+ L++
Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLR 174
Query: 1399 AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGCAA 1440
+ E TV + H + + D I+++ +G + G
Sbjct: 175 KLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPD 216
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-18
Identities = 64/227 (28%), Positives = 99/227 (43%), Gaps = 20/227 (8%)
Query: 1222 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+I N T + P AL+ ++ I G V ++G GAGKS++LNA+
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGS-----LRDNLDPFHMNDDLKIWSVL 1333
GQIL+DG+++ V A V Q P G+ + +NL + S
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDP--LAGTAPELTIEENLALAESRGKKRGLSSA 118
Query: 1334 E----KCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ +E + + GLE + + S GQRQ + L A L K+L LDE TA
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 1388 VDAQTASILQNA---ISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
+D +TA + I E K +T + + H + L+ LI+ H
Sbjct: 179 LDPKTAEFVMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHS 224
|
Length = 263 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 9e-18
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 15/220 (6%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF+NVT RY A++++N I G + ++G +G+GK++ + + RL G+I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDDLKIWSVLE-KCHV 1338
+DG +I +LR + V Q LF ++ +N L P L W + +
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP-----KLLKWPKEKIRERA 114
Query: 1339 KEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
E + VGL+ F S GQ+Q + +ARAL +L +DE +D T L
Sbjct: 115 DELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 1397 QNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
Q + G T++ + H I + D I I+ +G +
Sbjct: 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 9e-18
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 21/224 (9%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGG 1279
+EF++V+ Y S AL+DI+F+I G+ ++G G+GKS+I +N L
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-------NDDLKIWS 1331
+I VDG+ + V D+R + +V Q+P F G+ + F + + +KI
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-- 123
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-A 1390
V++ + VG+ ++ + S GQ+Q + +A L K++ LDE T+ +D A
Sbjct: 124 ------VRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 1391 QTASILQNAIS-SECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
IL+ + +TVI+I H I D++L+LD G L
Sbjct: 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKL 221
|
Length = 282 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-17
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 25/208 (12%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672
+ N+VL ++L +P VA++G GSGKS+L + ++G LT G I G
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411
Query: 673 ----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+A V Q P +L+ T N+ G++ + + L+ L + G +G
Sbjct: 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 787
E+G NLS GQ+ LALAR + I +LD+ + +D+ + I L R
Sbjct: 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-------QQALAAVRE 524
Query: 788 ----ILCTHNVQAISAADMVVVMDKGQV 811
++ H + I AD ++V+ +GQ
Sbjct: 525 HTTLVVIAHRLSTIVEADTILVLHRGQA 552
|
Length = 592 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------- 673
+ L VSL + KG V +IG GSGKS+LL + G + T G + G
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 674 -------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGD 723
+ V Q P + T+ D + FG ++ + V +VG
Sbjct: 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFG----LENLGLPREEIEERVAEALELVG-- 127
Query: 724 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG--P 780
+ + ++ NLSGGQ+ R+A+A + G +I +LD+ + +D + R +L ++
Sbjct: 128 LEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL--ELLKKLK 185
Query: 781 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
KT I+ TH+++ + AD VVV+D G++ G A++
Sbjct: 186 EEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
|
Length = 235 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
++ +SL + KG + ++G G+GK++ L + GE+ T G+ + +G
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA 73
Query: 673 --SIAYVPQ---VPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGG 722
S+ Y PQ + L T+R+++ F G +V++ L V G
Sbjct: 74 RQSLGYCPQFDALFDEL--TVREHLRFYARLKGLP---------KSEIKEEVELLLRVLG 122
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
++ LSGG + +L+LA A+ G + +LD+ S +D R I +
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-------L 175
Query: 783 LQKTR-----ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+ + R IL TH++ A D + +M G+++ IGS +L
Sbjct: 176 ILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
+N++ ++ + L D+N TIE G I+G +G+GKS++LN + L GQ+ ++G
Sbjct: 2 KNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59
Query: 1286 ---LNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+ + R + + Q+ L E ++ +NLD + K S EK K+
Sbjct: 60 QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD---LGLKYKKLSKKEKREKKK 116
Query: 1341 EV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E E VGL +K+ S G++Q + LARA+LK ++ DE T ++D + + +
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1400 ISSECK-GMTVITIAH 1414
+ G T+I + H
Sbjct: 177 LLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 83.6 bits (208), Expect = 1e-17
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E + +T R+ L AL D++F++ G G++G GAGK+++ N + G +L
Sbjct: 1 LEVRGLTKRFG-GL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58
Query: 1283 VDGLNIINTPVRDLRGR-----FAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEK 1335
DG +I P ++ F Q P LF ++ +N+ + +
Sbjct: 59 FDGEDITGLPPHEIARLGIGRTF----QIPRLFPELTVLENVMVAAQARTGSGLLLARAR 114
Query: 1336 CHVKEEVEA-------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+E E VGL S GQ++ + +ARAL K+L LDE A +
Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 1389 D----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
+ + A +++ +G+TV+ + H + V+++ D + +LD G
Sbjct: 175 NPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 26/224 (11%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I F+NV+ +Y+ L D++F I G IVG G+GKS+I + + + G+I
Sbjct: 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGS---------LRDNLDPFHMNDDLKIWS 1331
+ I + LR +V Q+P F GS L ++ P+
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY---------- 116
Query: 1332 VLEKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
++ H V E ++ V + + S GQ+Q + +A L + V+ LDE T+ +D
Sbjct: 117 --DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 1390 AQTASILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDHG 1431
L + + +T+I+I H +S + D +++++ G
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 2e-17
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 41/235 (17%)
Query: 1223 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
IE +N++ + AL++++ I G G++G +GAGKS+++ + L G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1281 ILVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DD--- 1326
+LVDG ++ ++L R + ++ Q H N D+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQ----------------HFNLLSSRTVFDNVAL 105
Query: 1327 -LKI--WSVLE-KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
L++ E K V E +E VGL S GQ+Q + +ARAL + KVL D
Sbjct: 106 PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
Query: 1383 ECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
E T+ +D T SIL+ I+ E G+T++ I H + V + D + ++D G L
Sbjct: 166 EATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
Length = 343 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 45/218 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +SL + KG V ++G G GK++LL I G T G+I+ G
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 673 -----SIAYVPQVPWILSGTIRDNI---LFGKNYDPQSYSETLKACTLD-VDISLMVGGD 723
S A P + T+ DNI L + +E + A LD V + G +
Sbjct: 79 GIVFQSYALFPNL------TVADNIAYGLKNRGMGRAEVAERV-AELLDLVGLP---GSE 128
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y G+ LSGGQ+ R+ALARA+ + +LD+ LSA+DA+V R L I L
Sbjct: 129 RKYPGQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARV-REHLRTEIRQ---L 180
Query: 784 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 816
Q+ T I+ TH+ +A+S AD +VVM+ G ++ +G+
Sbjct: 181 QRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 28/230 (12%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1276
I+F+NV Y P P L +I+F +E G+ V +VG TG+GKS+++ NAL + +
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-- 60
Query: 1277 CGGQILVDGLNII----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD--P--FHMNDD 1326
G I + G +I N ++ LR + ++V Q P LFE ++ +++ P F ++D
Sbjct: 61 -SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 1327 LKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
K + ++ VGL E + +S S GQ + + +A + ++LCLDE
Sbjct: 120 EA------KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 1386 ANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHL 1433
A +D + ++Q + G TVI + H + V D++L+L+HG L
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 4e-17
Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 29/216 (13%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1277
IE +++ + Y AL DIN I ++G +G GKS++L L R L P
Sbjct: 8 IEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 1278 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
G++L+DG NI V +LR R +V Q P F S+ DN+ L++ + +K
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-----AYGLRLHGIKDK 120
Query: 1336 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ E VE L VK +S + S GQ+Q +C+ARAL +VL +DE T+
Sbjct: 121 -ELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1388 VDAQTASILQNAISSECKGMTVITIAH------RIS 1417
+D + ++ I+ K T++ + H R+S
Sbjct: 180 LDPISTLKIEELITELKKKYTIVIVTHNMQQAARVS 215
|
Length = 253 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 4e-17
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 63/217 (29%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E + +T R+ + A L ++ ++ G ++G GAGKS+++ L L G+IL
Sbjct: 1 LELRGITKRF-GGVKA-LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
VD G P
Sbjct: 59 VD---------------------------GKEVSFASPRDARR----------------- 74
Query: 1343 EAVGLETFVKESGISF----SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+GI+ SVG+RQ++ +ARAL +++++L LDE TA + L
Sbjct: 75 -----------AGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
Query: 1399 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHL 1433
I G+ VI I+HR+ V + D + +L G +
Sbjct: 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 5e-17
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 39/240 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E +N++ Y AL ++ +E G V ++GR GAGK+++L + L G+I
Sbjct: 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 1282 LVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEKCH 1337
+ DG +I P R G A VP+ +F ++ +NL + D +
Sbjct: 61 IFDGEDITGLPPHERARLG-IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ------- 112
Query: 1338 VKEEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
+ ++E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 113 -ERDLEEV-YELFPRLKERRNQRAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 1387 ----NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGCAAA 1441
+ + ++ GMT++ + L + D +L++G + G AA
Sbjct: 166 GLAPKIVEEIFEAIKELRKEG--GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
|
Length = 237 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 5e-17
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 23/206 (11%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L ++ ++ G+ VG+VG GAGK+++L A+ G +LV G ++ R R
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 1300 FAVVPQSPFL-FEGSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1354
A VPQ L FE +R ++ P H + W+ ++ V+ +E G+ F
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTP-HRSR-FDTWTETDRAAVERAMERTGVAQFADRP 136
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1410
S S G+RQ + LARAL +++ VL LDE TA++D +T +++ + G T +
Sbjct: 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD---GKTAV 193
Query: 1411 TIAHRISTVLNM-----DEILILDHG 1431
H L++ DE+++L G
Sbjct: 194 AAIHD----LDLAARYCDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-17
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 33/218 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+ LN +SL + +G V VIG G+GKS+LLN+I G++ T G I
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 669 -HASGSIAYVPQVPWILSG-----TIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVG 721
+ +A V Q P L+G TI +N+ ++ + S L +
Sbjct: 76 AKRANLLARVFQDP--LAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 722 GDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LS 774
+ E ++ LSGGQR L+L A H I +LD+ +A+D + A ++ L+
Sbjct: 134 LGLGL--ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 775 NAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
I+ H L T ++ THN+ A+ + ++++ G++
Sbjct: 192 AKIVEEHKL--TTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 7e-17
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 26/223 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +NV+ Y + AL ++ I+ G ++G +G GK+++L + G+IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-- 1334
+DG +I N P + V Q+ LF P H+ ++ L++ + +
Sbjct: 59 LDGKDITNLPPH--KRPVNTVFQNYALF---------P-HLTVFENIAFGLRLKKLPKAE 106
Query: 1335 -KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
K V E ++ V LE + S GQ+Q + +ARAL+ KVL LDE +D +
Sbjct: 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 1394 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+Q + K G+T + + H L M D I +++ G +
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 7e-17
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E + ++ + AL ++ T+ G ++G GAGKS+++ L + P G+I
Sbjct: 8 LLELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1282 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-------------PFHMNDDL 1327
L+DG + ++P L A V Q E SL NL F + D
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQ-----ELSLVPNLSVAENIFLGREPTRRFGLID-- 118
Query: 1328 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ + +E + +GL+ S+ QRQ++ +ARAL ++VL LDE TA
Sbjct: 119 --RKAMRR-RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 1388 VDAQTASILQNAISS-ECKGMTVITIAHRISTVLNMDEIL 1426
+ + L + I + +G+ +I I+HR +DE+
Sbjct: 176 LTVKETERLFDLIRRLKAQGVAIIYISHR------LDEVF 209
|
Length = 500 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
LN VSL + +G + ++GE GSGKS+L + G + GSI G
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 674 --IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ V Q P T+ + + P S++ + ++ VG
Sbjct: 82 RPVQMVFQDPYSSLNPRR----TVGRIL--SEPLRPHGLSKSQQR---IAELLDQVGLPP 132
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+++ + LSGGQR R+A+ARA+ + +LD+ SA+D V IL+ + L+
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL----ELK 188
Query: 785 KTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 821
K R + +H++ + D + VMD GQ+ IG + +L
Sbjct: 189 KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 24/220 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NVT R+ AL D+N I G V ++G +G GK++ L + L G+I
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLE---KCHV 1338
+ G ++ + P +D R A+V Q+ L+ ++ DN + LK+ V + V
Sbjct: 59 IGGRDVTDLPPKD-RD-IAMVFQNYALYPHMTVYDN-----IAFGLKLRKVPKDEIDERV 111
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E E + +E + S GQRQ + L RA+++ KV +DE +N+DA+ L+
Sbjct: 112 REVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK----LRV 167
Query: 1399 AISSECK------GMTVITIAHRISTVLNM-DEILILDHG 1431
+ +E K G T I + H + M D I +++ G
Sbjct: 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 38/221 (17%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
++ +SL + KG V ++G G GK++LL I G + G I G
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 673 SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDM 724
I V Q S T+ +N+ FG + +KA + L +VG
Sbjct: 78 PIGMVFQ-----SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA---LELVGLEGF 129
Query: 725 A--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
A + LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R + +
Sbjct: 130 ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL-REQMRKELKELQR 184
Query: 783 -LQKTRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ Q A++ +D + VM+ G+++ +G+ ++
Sbjct: 185 ELGITFVYVTHD-QEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E + V Y L++I+ ++ G + I G +G GKS++L + L G +
Sbjct: 3 LLELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKE 1340
L +G ++ R + + Q+P LF ++ DNL P+ + + ++ +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR-----PDRAAALD 115
Query: 1341 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ L ++ + ++ S G++Q I L R L K+L LDE T+ +D ++
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 1400 I 1400
I
Sbjct: 176 I 176
|
Length = 223 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 53/242 (21%)
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+ +++ D T +W + L S +P GS+ A++G GSGKS+L +++G
Sbjct: 1 MMQQAGIVVNDVTVTW-----RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMG 55
Query: 660 EMMLTHGSIHASGS----------IAYVPQ---VPWILSGTIRDNILFG----------- 695
+ L G I G +AYVPQ V W + D ++ G
Sbjct: 56 FVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA 115
Query: 696 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
K D Q + L VD MV IGE LSGGQ+ R+ LARA+ +
Sbjct: 116 KKRDRQIVTAALAR----VD---MVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVI 164
Query: 756 MLDDVLSAVDAQVARWILSNAIMGPHMLQ------KTRILCTHNVQAISAADMVVVMDKG 809
+LD+ + VD + I+S +L+ KT ++ THN+ +++ VM KG
Sbjct: 165 LLDEPFTGVDVKTEARIIS-------LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKG 217
Query: 810 QV 811
V
Sbjct: 218 TV 219
|
Length = 272 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 16/226 (7%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS---SILNALFRLTPICGG 1279
+E ++ RY AL D++FT+ G V ++G GAGKS S+L L+ G
Sbjct: 2 LEVAGLSFRYGAR--RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE---G 56
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPFHMNDDLK-IWSVLEKCH 1337
QI V G ++ P L R VV Q P L + S+R NL +H L + +
Sbjct: 57 QISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLR-YHA--ALHGLSRAEARAR 112
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
+ E + +GL + + G R+ + +ARALL +L LDE T +D + + +
Sbjct: 113 IAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 1398 NAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441
+ + + G++V+ H + + D +++L G + G AA
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 41/216 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------HASGS---- 673
L+ VS + KG + ++GE GSGKS+L +ILG + T GSI S
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79
Query: 674 ----IAYVPQVPWILSG-----TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P +S TI + I + + S E K L + + VG
Sbjct: 80 RRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV--GVGLP 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ LSGGQR R+A+ARA+ + + D+ SA+D V IL +L
Sbjct: 136 EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL-------DLL 188
Query: 784 QK-------TRILCTHNVQAISA-ADMVVVMDKGQV 811
+K T + TH++ ++ AD V VM G++
Sbjct: 189 KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 3e-16
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINTPV 1293
AL I+ IE + V +G +G GKS+ L R+ + G+I +DG NI + V
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 1294 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV------ 1345
+ +LR +V Q P F S+ +N+ L++ V + +++ VE
Sbjct: 78 QVDELRKNVGMVFQRPNPFPKSIFENV-----AYGLRVNGVKDNAFIRQRVEETLKGAAL 132
Query: 1346 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
++ +KES + S GQ+Q +C+ARA+ S VL +DE + +D + + ++ I
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 1404 CKGMTVITIAHRI 1416
K T++ + H +
Sbjct: 193 KKDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG------------EMMLTHGSIHA-SG 672
L+ +SL + KG V ++G GSGKS+LL + G LT S+
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75
Query: 673 SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q P T+ + + FG E + V+ +L + G
Sbjct: 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEER----VEEALELVGLEGLRDRS 131
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQ+ R+A+A + DI +LD+ + +D R +L + KT I+
Sbjct: 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL-ELLKKLKAEGKTIIIV 190
Query: 791 THNVQAISA-ADMVVVMDKGQ 810
TH++ + AD V+V++ G+
Sbjct: 191 THDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+L +S+ G++ ++G G+GKS+L+ I + T GSI G
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 673 -SIAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q P + GT++DNI +G KN D + Y +VG +
Sbjct: 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS-------------IVGLNKE 123
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y NLSGG+ R+++AR + + ++ +LD+ SA+D I + + +
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQV 811
T I THN+ QA D ++KG +
Sbjct: 184 TVIWITHNMEQAKRIGDYTAFLNKGIL 210
|
Length = 241 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 5e-16
Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------SIAYVPQV 680
+ VS +G + ++GE G+GK++LL I ++ G + G ++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 681 PWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+L G T R+N+ F + + +KA ++ L + Y+ +
Sbjct: 78 G-VLFGERGLYARLTARENLKYFARLNGLSR--KEIKARIAELSKRLQLL---EYLDRRV 131
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
S G + ++A+ARA+ H I +LD+ S +D R + I + I +
Sbjct: 132 GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI-RTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 792 HNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
H +Q + A D V+V+ KG+V GS L
Sbjct: 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 7e-16
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 18/219 (8%)
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
+N+ YK ++D++ + G VG++G GAGK++ + L G+IL+D
Sbjct: 8 ENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 1286 LNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCHVKE 1340
+I P+ R R + +PQ +F ++ DN+ DLK K +
Sbjct: 66 EDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK--AERKEELDA 122
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+E + S S G+R+ + +ARAL + K + LDE A VD +Q I
Sbjct: 123 LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
Query: 1401 SS-ECKGMTVITIAHRISTVLNMDEIL-ILDHGHLPHCG 1437
+ +G+ V+ H N+ E L I D ++ G
Sbjct: 183 KHLKDRGIGVLITDH------NVRETLDICDRAYIISDG 215
|
Length = 243 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 8e-16
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGS--- 673
E+ L V+L + G VA++G GSGKS+LLN +LG + T G + +G
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLT 70
Query: 674 --------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD 715
I +V Q +P T+ +N+ P +
Sbjct: 71 KLSEKELAKLRRKKIGFVFQNFNLLP---DLTVLENVEL-----PLLIAGKSAGRRKRAA 122
Query: 716 ISL--MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
L ++G + + +K LSGGQ+ R+A+ARA+ + I + D+ +D++ A+ +L
Sbjct: 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVL 182
Query: 774 SNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
KT I+ TH+ + AD V+ + G++
Sbjct: 183 ELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (197), Expect = 8e-16
Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 13/237 (5%)
Query: 1213 LSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1272
L D+ + E +N Y LHD+N I+ +G +G GKS+ L L +
Sbjct: 71 LKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130
Query: 1273 LTPICGG-----QILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND 1325
L + G +I G N + + +LR R +V Q P FE S+ DN+ N+
Sbjct: 131 LNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 1326 DLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCL 1381
+ +LEK V++ +++ L VK+ +G + S GQ+Q +C+ARA+ +VL +
Sbjct: 191 GINDRKILEKI-VEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249
Query: 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
DE T+ +D + ++ I K ++I + H ++ + DE + G + G
Sbjct: 250 DEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 8e-16
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 21/223 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+E + +T R+ P + A D++ +++ G ++G GAGKS+++ LF L G+I
Sbjct: 4 ALEMRGITKRF-PGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1282 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEG-SLRDNL-----DPFHMNDDLKIWSVLE 1334
VDG + I +P +R +V Q L ++ +N+ D +
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ--ARA 119
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA- 1393
+ +KE E GL SVG++Q + + +AL + +++L LDE TA + Q A
Sbjct: 120 R--IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 1394 ---SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGH 1432
IL+ + G T+I I H++ V+ + D + +L G
Sbjct: 178 ELFEILRRLAAE---GKTIIFITHKLKEVMAIADRVTVLRRGK 217
|
Length = 501 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
L +S + KG V +IG G+GKS+LL I G T G + +G +A L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP----LIELG 97
Query: 686 G------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
T R+NI + E + ++ + + GD +I + S G
Sbjct: 98 AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAEL--GD--FIDQPVKTYSSGMY 153
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAI- 797
ARLA + A + DI +LD+VL+ DA + + + KT +L +H++ AI
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQE--KCLERLNELVEKNKTIVLVSHDLGAIK 211
Query: 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 828
D + ++ GQ++ GS + + Y
Sbjct: 212 QYCDRAIWLEHGQIRMEGSPEE-VIPAYEED 241
|
Length = 249 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 28/217 (12%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC- 1277
IE +N+ + Y AL +IN I ++G +G GKS++L +L R L P
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1278 -GGQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G++L DG +I + V +LR R +V Q P F S+ DN+ ++ + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI-----AYGPRLHGIKD 113
Query: 1335 KCHVKEEVEA----VGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
K + E VE L VK+ S + S GQ+Q +C+ARAL +VL LDE T+
Sbjct: 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAH------RIS 1417
+D ++ I K T++ + H RIS
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARIS 210
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1295
AL DIN IE ++G +G GKS+ L R+ G + ++G ++ N V
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76
Query: 1296 LRGRFAVVPQSPFLFEGSLRDNLD---PFHM------NDDLKIWSVLEKCHVKEEVEAVG 1346
LR +V Q P +F S+ +N+ H ++ + L+K + EEV+
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK- 135
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1406
+K++ ++ S GQ+Q +C+ARAL K+L LDE T+ +D ++ +++ +
Sbjct: 136 ----LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 1407 MTVITIAHRI 1416
+++I + H +
Sbjct: 192 LSMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 44/225 (19%)
Query: 1223 IEFQNVTMRYKPSLPAA----LHDINFTIEGGTQVGIVGRTGAGKSSILNAL--FRLTPI 1276
+ F+N+T+ K S + L +++ + G I+G +GAGKS++LNAL R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
G++L++G R R VPQ DD+ +
Sbjct: 64 VSGEVLING---RPLDKRSFRKIIGYVPQ-------------------DDI----LHPTL 97
Query: 1337 HVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V+E + A L G+ S G+R+ + +A L+ + +L LDE T+ +D+ +A
Sbjct: 98 TVRETLMFAAKL------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 1396 LQNAISSECK-GMTVITIAHRIST-VLNM-DEILILDHGHLPHCG 1437
+ + + G T+I H+ S+ + + D++L+L G + + G
Sbjct: 150 VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (194), Expect = 1e-15
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 18/230 (7%)
Query: 1222 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+I+F+ V Y+P+ P AL DI+ ++ G+ ++G TG+GKS++L L L
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 1279 GQILVDGLNIINT-------PVRDLRGRFAVVPQSPFLFEGSLRD-NLDPFHMNDDLKIW 1330
G++ V + + +T PVR G P+S E L+D P + I
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP----QNFGIP 116
Query: 1331 SVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ E++E VGL + F ++S S GQ + + +A L +VL LDE TA +D
Sbjct: 117 KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 1390 AQTASILQNAISS-ECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437
+ + S G TV+ + H + V + D + +L+ GH+ CG
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI------LVDGLNIINTPVRD 1295
I+F + GI G +GAGKS++L + L GG I L D IN P +
Sbjct: 16 KIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 1296 LRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1351
R + +V Q LF ++R+NL N + +I V E ++ +GL+ +
Sbjct: 75 -R-KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRI-------SVDELLDLLGLDHLL 125
Query: 1352 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTV 1409
S G++Q + LARAL ++L LDE + +D L + K + V
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPV 185
Query: 1410 ITIAHRISTVLNM-DEILILDHGHLPHCG 1437
I + H +S + D I++++ G L + G
Sbjct: 186 IFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 26/231 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ F +VT R+ L +NF++ G +V ++G +G+GKS+IL L L PI GQI
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1283 VDGLNIINTP-------------VRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDD 1326
V+G + + P +R +R + +V QS LF ++ DN P +
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--- 115
Query: 1327 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
L + + E ++ VGL S GQ+Q + +ARAL KV+ DE T+
Sbjct: 116 LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTS 175
Query: 1387 NVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+D + + N I +SE +T++ + H + D + D G +
Sbjct: 176 ALDPELVGEVLNVIRRLASEHD-LTMLLVTHEMGFAREFADRVCFFDKGRI 225
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 21/217 (9%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +N++ R+ A+++I+ T+ + G++G GAGKS++L + + G+I+
Sbjct: 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHV 1338
DG +DL +++ +SP L+E + R+NL D +I VL
Sbjct: 59 FDGHPWTR---KDLHKIGSLI-ESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNI--- 111
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
V L K+ FS+G +Q + +A ALL K+L LDE T +D L+
Sbjct: 112 ------VDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165
Query: 1399 AISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
I S +G+TVI +H +S V + D I I+ G L
Sbjct: 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 42/222 (18%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
E+ L VSL + KG VA++G GSGKS+LLN + G T G + G
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK 70
Query: 673 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I +V Q +L T +N+ P + K + L+
Sbjct: 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----PLLLAGVPKKERRERAEELL 125
Query: 720 --VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
VG GD Y E LSGGQ+ R+A+ARA+ + I + D+ +D++ + ++
Sbjct: 126 ERVGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181
Query: 775 -----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
N G T ++ TH+ + AD ++ + G++
Sbjct: 182 LLRELNKEAG-----TTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 38/227 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
V+L+ V L +P+G ++A++G GSGKS+LL ILG + G I G
Sbjct: 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLM----VG 721
+ + Q + S T+ +N+ F + + E+L ++ LM VG
Sbjct: 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIR-----ELVLMKLELVG 133
Query: 722 --GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
G A Y E LSGG R R+ALARA+ ++ LD+ S +D A I
Sbjct: 134 LRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189
Query: 778 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAVS 823
L T I+ TH++ ++ + AD V V+ G+V G+ +L S
Sbjct: 190 ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+LN +SL + G +A+ G G GKS+LL + + T G++ G
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 674 -IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
++Y Q P + T+ DN++F + D + + L L I
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP-----------DSI 126
Query: 728 GEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
K + LSGG++ R+AL R + I +LD++ SA+D R I ++ ++ ++
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI--EEMIHRYVREQN 184
Query: 787 R--ILCTHN-VQAISAADMVVVMDKG 809
+ TH+ QAI AD V+ + G
Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 23/226 (10%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
I FQ V RY+ P AL+D+N +I G+ V I+G TG+GKS++ LN L + T
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS- 61
Query: 1277 CGGQILVDGLNII-----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKI 1329
G + + G +I N ++ LR + +V Q P LFE ++ ++ MN +
Sbjct: 62 --GTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE 118
Query: 1330 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+K +E +E VGL E + S S GQ + + +A L +VL LDE TA +
Sbjct: 119 EDAKQK--AREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1389 DAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHG 1431
D + + + KG+T + + H + D+I+++ G
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222
|
Length = 290 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 9/215 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N+ +Y A+ ++F + G G++G GAGK++ + L L G+
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
V G +++ P R++R R +V Q + + + +NL + + + + E
Sbjct: 59 VAGHDVVREP-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP-GAERRE-RIDEL 115
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
++ VGL ++S G R+ + +AR+L+ +VL LDE T +D QT + + I
Sbjct: 116 LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Query: 1402 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
E GMT++ H + + D + I+DHG +
Sbjct: 176 KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-15
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ +SL + G LVA++G G+GKS+LL I G G I +G
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 674 ---IAYVPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA- 725
+ +V Q + T+ DNI FG + P + L + L+ +A
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL---LRLVQLEGLAD 132
Query: 726 -YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA----RWILSNAIMGP 780
Y + LSGGQR R+ALARA+ + +LD+ A+DA+V RW+
Sbjct: 133 RYPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH---- 184
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 819
L T + TH+ +A+ AD VVV+++G+++ +G +
Sbjct: 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 3e-15
Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 11/218 (5%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1278
+I +NV+ Y PA L +IN I+ G +GI+G+ G+GKS++ LN L R
Sbjct: 1 MIRLENVSYSYPDGTPA-LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---K 56
Query: 1279 GQILVDGLNIIN-TPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
G++LV G++ + + ++ +R +V Q+P F G + D ++L + + +
Sbjct: 57 GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEE-DLAFGPENLCLPPIEIRK 115
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SI 1395
V + +GLE + S + S GQ Q + LA L + L DE T+ +D + ++
Sbjct: 116 RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
L+ KG T++ I H + + + D I+++D G +
Sbjct: 176 LERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKI 213
|
Length = 274 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 3e-15
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 18/220 (8%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR-----LTPI 1276
LIE +++ Y S AL++INF +++ ++G GAGKS+ LFR L P
Sbjct: 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKST----LFRHFNGILKP- 56
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G +L+ G I +R++R +V Q+P +F ++ ++ +N L +V
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH 116
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ V + +GLE S G+++ + +A + +VL LDE TA +D Q
Sbjct: 117 R--VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 1395 ILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHG 1431
L + ++ E GMTVI H++ V M D I ++D G
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214
|
Length = 277 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1277
+E + ++ Y ALHDI+ E ++G +G GKS+ L L R L P
Sbjct: 7 MEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV 64
Query: 1278 GGQILVDGLNIINT--PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
G+IL+DG NI + V +LR R +V Q P F S+ +N+ L++ V +K
Sbjct: 65 EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV-----AYGLRVNGVKDK 119
Query: 1336 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
++ E VE L VK ES + S GQ+Q +C+ARAL +VL +DE +
Sbjct: 120 AYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 1388 VDAQTASILQNAISSECKGMTVITIAH 1414
+D ++ I T+I + H
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 4e-15
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 42/222 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+L VSL +P+G +VA++G G+GK++LL +I+G + GSI G
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 674 --IAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY--- 726
I YVP+ I T+ +N+L G L + Y
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL---------------ERVYELF 119
Query: 727 ------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ LSGG++ LA+ARA+ + +LD+ S A + AI
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE-PSEGLAPKIVEEIFEAIREL 178
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
T +L N A+ AD V+++G+V G++A+L
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-15
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 18/196 (9%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNI--INT 1291
AL IN IE ++G +G GKS+ L L R L P G++L+DG +I +
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1351
V LR R +V Q P F S+ DN+ +K L++ V++ ++ L V
Sbjct: 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI-VEKSLKGAALWDEV 136
Query: 1352 KE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407
K+ S + S GQ+Q +C+ARAL +VL +DE T+ +D + ++ I K
Sbjct: 137 KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196
Query: 1408 TVITIAH------RIS 1417
T++ + H RIS
Sbjct: 197 TIVIVTHNMQQASRIS 212
|
Length = 250 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 4e-15
Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 15/221 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1278
++E +++ Y P AL INF E G V ++G GAGKS++ N + + T
Sbjct: 1 ILETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---S 56
Query: 1279 GQILVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G++L+ G + + ++R +V Q+P LF ++ +++ +N L V +
Sbjct: 57 GEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK 116
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ VKE ++AVG+E F + S GQ++ + +A L +++ LDE T+ +D AS
Sbjct: 117 R--VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 1395 ILQNAISS-ECKGMTVITIAHRISTV-LNMDEILILDHGHL 1433
+ + +G+T+I H + V + D++ ++ G +
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-15
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 41/222 (18%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI----------- 674
VLN +SL +P G +VA++G GSGK++LL I G L H SG I
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG---LEH---QTSGHIRFHGTDVSRLH 70
Query: 675 AYVPQVPWILSG-------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDMAY 726
A +V ++ T+ DNI FG P+ A V L MV +A+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV--QLAH 128
Query: 727 IGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMG 779
+ ++ LSGGQ+ R+ALARA+ I +LD+ A+DAQV RW+ L
Sbjct: 129 LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--- 185
Query: 780 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L+ T + TH+ + A+ AD VVVM +G ++ G+ +
Sbjct: 186 ---LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 5e-15
Identities = 94/472 (19%), Positives = 177/472 (37%), Gaps = 38/472 (8%)
Query: 973 KVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1032
K+ + + KI++ P+ ++ R+L +SD+ I + + ++ A + LG A
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIIL-TLGSAA 140
Query: 1033 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS----RELRRLDSVSRSPIYASFTETLNGS 1088
L+Y+ LL V + + F + R + + + L G
Sbjct: 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETED----KLQNDYQTILEGR 196
Query: 1089 S--TIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1146
T+ ++E + Y+ + L A S I + +I
Sbjct: 197 KELTLNRERAEYVHNNLYIPDAQEYRHHI---------IRANTFHLLAVNWSNIMLLGLI 247
Query: 1147 GSRGNLPATFSTPGLVGLALSYAAPIVSL---LGNFLSSFTETEKEMVSLERVLEYMDVP 1203
G L + +A + ++ L L + + V+ ++ + P
Sbjct: 248 GLVFWLALSLGWAS-TNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAP 306
Query: 1204 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1263
+ PDW +E +NV Y+ + + IN TI+ G V ++G G+GK
Sbjct: 307 YKADFPRPQAFPDWK---TLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGK 362
Query: 1264 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1323
S++ L L G+IL+DG + + D R F+ V LF+ L +
Sbjct: 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKAS 420
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
++ W L++ + + S + S GQ++ + L ALL+ +L LDE
Sbjct: 421 PQLIEKW--LQRLELAHKTSLNDGRF----SNLKLSTGQKKRLALLLALLEERDILVLDE 474
Query: 1384 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433
A+ D + K G T+ I+H ++ D +L + +G L
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 5e-15
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 39/216 (18%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1296
L + ++ G V IVG +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85
Query: 1297 RGR--------FAVVP--------QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
R R F ++P P G + + K
Sbjct: 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD----------------SRAGAKA 129
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA---SILQ 1397
+EAVGL + S G++Q + LARA VL DE T N+D T + L
Sbjct: 130 LLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
A++ E +G T++ + H D L L G L
Sbjct: 190 FALNRE-RGTTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 6e-15
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
++ V+L + +G + +IG GSGK++ L I + T G I G
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 673 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I YV Q P + T+ +NI +D + + + +VG D +
Sbjct: 76 KIGYVIQQIGLFPHL---TVAENIATVPKLLGWDKERIKKRADE------LLDLVGLDPS 126
Query: 726 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-ML 783
++ + LSGGQ+ R+ +ARA+ I ++D+ A+D + R L I L
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQKEL 185
Query: 784 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
KT + TH++ A+ AD + VMD G++ + ++
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223
|
Length = 309 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 6e-15
Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 29/228 (12%)
Query: 1222 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLT 1274
+I+ +NV+ +Y+ + AL D+N ++ G + I+GR G+GKS+I +NAL L
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LI 61
Query: 1275 PICGGQILVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMND 1325
P G++ VDGL+ + + D+R + +V Q+P DN D +
Sbjct: 62 P-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP--------DNQIVATIVEEDVAFGPE 112
Query: 1326 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
+L I + V E ++ VG+ + + + S GQ+Q + +A L + + DE T
Sbjct: 113 NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 1386 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHG 1431
A +D + N I K G+T+I I H + + D I+++D G
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSG 220
|
Length = 280 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 26/211 (12%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L +++ +E G I+G TG+GKS +L + G+IL++G +I N P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMND------DLKIWSVLEKCHVKEEV----EAVGLET 1349
+ VPQ+ LF HM LK V +K ++ +V E +G++
Sbjct: 73 ISYVPQNYALFP----------HMTVYKNIAYGLKKRKV-DKKEIERKVLEIAEMLGIDH 121
Query: 1350 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GM 1407
+ + S G++Q + +ARAL+ + K+L LDE + +D +T L+ + K G+
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
Query: 1408 TVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
TV+ + H + D++ I+ +G L G
Sbjct: 182 TVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 7e-15
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +NV+ R+ A L D++ I G V ++G +G+GK+++L + L G IL
Sbjct: 3 IEVRNVSKRF-GDFVA-LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE------- 1334
G + + PV++ F V Q LF ++ DN+ F L++ E
Sbjct: 61 FGGEDATDVPVQERNVGF--VFQHYALFRHMTVFDNV-AF----GLRVKPRSERPPEAEI 113
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ V E ++ V L+ S GQRQ + LARAL KVL LDE +DA+
Sbjct: 114 RAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
Query: 1395 ILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGCAA 1440
L+ + + +T + + H L + D +++++ G + G
Sbjct: 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 23/212 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP----Q 679
V L+ VSL + +G ++G G GK++LL I G T G I G I +P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP 73
Query: 680 VPWILSG-------TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
V + T+ +NI FG K E + LD +V + Y
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALD-----LVQLE-GYANR 126
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
K LSGGQ+ R+A+ARA+ + + +LD+ L A+D ++ + + L T +
Sbjct: 127 KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186
Query: 790 CTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
TH+ + A++ +D + VM+KG+++ IG+ ++
Sbjct: 187 VTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 668
+N L VS + +G VA++G GSGKS++ + G + G I
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL 78
Query: 669 -HASGSIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGG 722
I + Q P + T+ D+I FG K P+ + + V +
Sbjct: 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME----- 133
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
Y+ ++ NLSGGQ+ R+A+A + +I + D+ S +D + R I IM
Sbjct: 134 --DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK--IM--VD 187
Query: 783 LQKTR----ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
L+KTR I TH++ AD V+V +G++ G ++
Sbjct: 188 LRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 59/214 (27%), Positives = 108/214 (50%), Gaps = 14/214 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1276
++E +++++ Y A++DI+ IE ++G +G GKS+ L ++ R+ +
Sbjct: 21 ILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1277 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G+IL +GLNI+ N V +LR +V Q P F S+ +N+ + SVL+
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 1335 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ V+E + L VK S +S S GQ+Q +C+AR L VL LDE + +D
Sbjct: 139 EI-VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197
Query: 1391 QTASILQNAISSECKGMTVITIAHRISTVLNMDE 1424
+ + ++ I+ + ++I + H + L + +
Sbjct: 198 ISNAKIEELITELKEEYSIIIVTHNMQQALRVSD 231
|
Length = 268 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 63/215 (29%), Positives = 112/215 (52%), Gaps = 7/215 (3%)
Query: 1222 LIEFQNVTMRYKPSLPA-ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
+IE +N+T +YK L+D++F ++ G + I+G G+GKS+ + + L GQ
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1338
I++DG + V D+R + +V Q+P F G+ ++ F + N + + E+ V
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER--V 121
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
E +E VG++ F + S GQ+Q + +A A+ K++ LDE T+ +D + L
Sbjct: 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
Query: 1399 AISS--ECKGMTVITIAHRISTVLNMDEILILDHG 1431
I + MTVI+I H + V D +L++ +G
Sbjct: 182 TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 38/214 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
L +SL +PKG + A+IG G GKS+LL +L + G +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 677 ------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
V Q P G+I DN+ +G E L V+ +L
Sbjct: 74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE---RVEEAL----RK 126
Query: 725 AYIGE------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
A + + + LSGGQ+ RL LARA+ + ++ +LD+ SA+D ++ + I
Sbjct: 127 AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-ISTAKIEELIA 185
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
+ T ++ THN+ QA AD + G++
Sbjct: 186 ELKK-EYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 1234 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGGQILVDG--LNI 1288
P P L +NF E G + ++G GAGKS++ LN L R G +L+DG L+
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDY 58
Query: 1289 INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1346
+ + R R +V Q P LF + ++ +N L V + V+E + AVG
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR--VREALTAVG 116
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISS 1402
+ S G+++ + +A A+ VL LDE TA +D Q +IL+ +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1403 ECKGMTVITIAHRI 1416
GMTV+ H +
Sbjct: 177 ---GMTVVISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 20/217 (9%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1280
+ +V Y LP + T+ G V I+G +GAGKS++LN A F TP G+
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPA-SGE 55
Query: 1281 ILVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1338
IL++G++ +P + R +++ Q LF ++ N+ ++ LK+ + ++ V
Sbjct: 56 ILINGVDHTASPPAE---RPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKV 110
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ 1397
+ VGL F+K S GQRQ + LAR L++ +L LDE + +D A A +L
Sbjct: 111 EAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLA 170
Query: 1398 --NAISSECKGMTVITIAHRISTVLN-MDEILILDHG 1431
+ + E + MT++ + H D ++ LD+G
Sbjct: 171 LVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNG 206
|
Length = 231 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 21/195 (10%)
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1286
N++ YK L D++ + G + + G+ GAGK+++ L L G IL++G
Sbjct: 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 1287 NIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1344
I ++ R V Q LF S+R+ L D E+ E
Sbjct: 63 PI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG----------NEQAET 109
Query: 1345 V----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
V L + +S S GQ+Q + +A ALL +L DE T+ +D + + I
Sbjct: 110 VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 1401 SSECK-GMTVITIAH 1414
G VI I H
Sbjct: 170 RELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-14
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+LN +S +P G VA++GE G+GKS++L + + GSI G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYI 727
+I VPQ + + TI NI +G+ + E A D SL G D +
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTG-V 393
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQK 785
GE+G+ LSGG++ R+A+AR + I +LD+ SA+D + I + +
Sbjct: 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR---- 449
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
T ++ H + I AD ++V+D G++ G+ +L A LY+ W
Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496
|
Length = 497 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 685
L + G +VA++G G+GKS+LLN I G + GSI +G Y V +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 686 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 734
T+R NI G + LK VD + VG Y+ L
Sbjct: 78 ENNLFAHLTVRQNIGLGLH-------PGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQL 129
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
SGGQR R+ALAR + + I +LD+ SA+D + +L+ Q+T ++ TH++
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 795 Q-AISAADMVVVMDKGQVKWIG 815
A + A + V+ +G++K +
Sbjct: 190 SDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 3e-14
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 20/213 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--------------LGEMMLTHGSIH 669
N VL+ +SL + G L+A+IG+ G GK++LL +I + + LTH H
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 670 ASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
G + DN+ FG ++ + + + + GD A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL--GDAAA--H 133
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
LSGG + R+A+ARA+ D+ +LD+ LSA+DA + + L + IL
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 790 C-THN-VQAISAADMVVVMDKGQVKWIGSSADL 820
C TH+ A++ AD +M G++ G L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-14
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 28/215 (13%)
Query: 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILV 1283
F N ++ P L +I+F +E G + + G TG+GKSS+L + L P G+I
Sbjct: 431 FSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKI-- 483
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1343
GR + PQ+ ++ G+++DN+ D+ + SV++ C ++E++
Sbjct: 484 -----------KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIA 532
Query: 1344 AVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAI 1400
+ T + E GI+ S GQR I LARA+ K + + LD ++D T I ++ +
Sbjct: 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
Query: 1401 SSECKGM---TVITIAHRISTVLNMDEILILDHGH 1432
CK M T I + ++ + D+IL+L G
Sbjct: 593 ---CKLMSNKTRILVTSKLEHLKKADKILLLHEGV 624
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 4e-14
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI-----LVDGLNIINTP 1292
A L +IN I G IVG+ G GKSS+L A+ G++ + T
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GL 1347
R+ R A Q P+L ++ +N+ PF+ + +V + C ++ +++ + G
Sbjct: 75 SRN-RYSVAYAAQKPWLLNATVEENITFGSPFNKQ---RYKAVTDACSLQPDIDLLPFGD 130
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISS--EC 1404
+T + E GI+ S GQRQ IC+ARAL +++ ++ LD+ + +D + ++Q I +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1405 KGMTVITIAHRISTVLNMDEILILDHG 1431
T++ + H++ + + D I+ + G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-14
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWI 683
G VA++G G+GKS+L+N + G I G +IA V Q +
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420
Query: 684 LSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
+ +I DNI G+ P + E + +A D I G +GE+G LSGG+
Sbjct: 421 FNRSIEDNIRVGR---PDATDEEMRAAAERAQAHDF-IERKPDGYDTVVGERGRQLSGGE 476
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
R RLA+ARA+ I +LD+ SA+D + + A + M +T + H + +
Sbjct: 477 RQRLAIARALLKDPPILILDEATSALDVETEAKV--KAALDELMKGRTTFIIAHRLSTVR 534
Query: 799 AADMVVVMDKGQVKWIGSSADLA 821
AD ++V D G+V GS +L
Sbjct: 535 NADRILVFDNGRVVESGSFDELV 557
|
Length = 588 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 48/226 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L VSL + +G +VA++G G+GK++LL +I+G + G I G
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 673 -SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDM----- 724
IAYVP+ I T+ +N+L G + E D++ ++
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE------RDLEEVY----ELFPRLK 127
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAIMGP 780
++ LSGG++ LA+ARA+ + +LD+ L+ + ++ I
Sbjct: 128 ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI-------- 179
Query: 781 HMLQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLA 821
L+K T +L N + A+ AD V++ G++ G++A+L
Sbjct: 180 KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 4e-14
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 21/218 (9%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL------NIINT 1291
A L DI I + GI+G +G+GKS++L L RL I +I VDG +I
Sbjct: 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83
Query: 1292 PVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1346
LR +V Q P F S+ DN L + + +I ++E+C + VG
Sbjct: 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEEC-----LRKVG 138
Query: 1347 LETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
L V + S GQ+Q + +ARAL KVL +DE T+ +D + ++ I+
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 1403 ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGCA 1439
+ ++ ++H V + D + L +G L G +
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 48/221 (21%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
E + L VS +P+G + +IG G+GKS+LL + G G++ G ++ +
Sbjct: 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL 88
Query: 678 --------PQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGG 722
P+ L+G R+NI + + E ++ L G
Sbjct: 89 LGLGGGFNPE----LTG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSEL---------G 133
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSN 775
D +I S G +ARLA A A DI ++D+VL+ DA + R +L
Sbjct: 134 D--FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 776 AIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIG 815
KT IL +H+ +I D +V++KG++++ G
Sbjct: 192 G--------KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 66/252 (26%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1280
+I +N+++ Y L +++ T+ G ++G+VGR GAGKS++L L L P G
Sbjct: 3 MITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH-- 1337
GL R + Q P L ++ D + + ++ +L +
Sbjct: 61 TRPKGL------------RVGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEA 104
Query: 1338 ------------------------------VKEEVEAVGLETFVKESGISFSVGQRQLIC 1367
+E + +G + S S G R+ +
Sbjct: 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVS-SLSGGWRRRVA 163
Query: 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH------RISTVLN 1421
LARALL+ +L LDE T ++D ++ L++ + TVI ++H ++T
Sbjct: 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG--TVIVVSHDRYFLDNVAT--- 218
Query: 1422 MDEILILDHGHL 1433
IL LD G L
Sbjct: 219 --HILELDRGKL 228
|
Length = 530 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 5e-14
Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 41/220 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA-SGSIAYVPQ-- 679
+ VLNQ+ L +P G VAV+G G GKS+LL + G + G + A + +A +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDT 83
Query: 680 ---------VPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+PW + DN+ G + + + L A L D A
Sbjct: 84 RLMFQDARLLPW---KKVIDNVGLGLKGQWRDAAL-QALAAVGL---------ADRA--N 128
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 785
E LSGGQ+ R+ALARA+ H + +LD+ L A+DA + R + + I + Q+
Sbjct: 129 EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA-LTRIEMQDLIES--LWQQHGF 185
Query: 786 TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSL 824
T +L TH+V +A++ AD V+++++G++ DL V L
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEGKI-----GLDLTVDL 220
|
Length = 257 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 5e-14
Identities = 102/511 (19%), Positives = 179/511 (35%), Gaps = 40/511 (7%)
Query: 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 999
F LC+ + + A+ + + L KI+ AP+ D+ ++
Sbjct: 57 FSFGGLCLLALLFR---IGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLI 113
Query: 1000 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1059
+ D+ I+ L I +A + IA L+Y+ V + + I + Q
Sbjct: 114 PLLTHDIDQINAFLFIFPPIAIALAIFFFCIAY-LAYLSVPMFAITISAIIIGTAAQLLA 172
Query: 1060 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIR--AFKSEDYFMAKFKEHVVLYQRTSYS 1117
+ G+ ++ + + +E
Sbjct: 173 FMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232
Query: 1118 ELTASLWLSLRL---QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1174
E+ L QLL +I A + + + A S V L P+
Sbjct: 233 EI---LIFIAAENFGQLLFFLLIGCALFAAAMFASID-AAAIS--AFVLALLYIKGPLEM 286
Query: 1175 LLGNFLSSFTETEKEMVSLERVLEY---MDVPQEELC-----GYQSLSPDWPFQGLIEFQ 1226
L+ S+ + ++ +R+ ++ + P+ EL L+ D IE +
Sbjct: 287 LV----SALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV-DSIELK 341
Query: 1227 NVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
+V M K S AL I+ I G V IVG G GKS++ L G+IL+
Sbjct: 342 DVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILL 401
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW-SVLEKCHVKEEV 1342
DG + D R F+ + LF+ + + D+ + + LE K ++
Sbjct: 402 DGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIAD-KVKI 460
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
E G T + S GQ++ + L A L+ +L DE A+ D +
Sbjct: 461 EDGGFSTTT-----ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 1403 ECK--GMTVITIAHRISTVLNMDEILILDHG 1431
+ K G T+I I+H D+I+ L G
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAG 546
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 41/234 (17%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E N+ + Y S L ++ + G ++GR G GK+++L L L P+ G I +
Sbjct: 2 EVSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1284 DGLNIINTP----VRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
DG +I P R G A VPQ P L ++ +NL + L
Sbjct: 60 DGEDITKLPPHERAR--AG-IAYVPQGREIFPRL---TVEENLL-----------TGLAA 102
Query: 1336 C-----HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT--- 1385
+ +E+ + L+ + G S GQ+Q + +ARAL+ K+L LDE T
Sbjct: 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
Query: 1386 -ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
++ ++ + +E GM ++ + + + D +++ G + G
Sbjct: 163 QPSIIKDIGRVI-RRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASG 214
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
L VSL + G VA+IG G+GKS+LL + G + T GS+ G+
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
Query: 674 ----IAYVPQ-VPWILSGTIRDNILFGK------------NYDPQSYSETLKACTL--DV 714
I + Q I ++ +N+L G+ + + E +A V
Sbjct: 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRALAALERV 132
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
+ D AY + LSGGQ+ R+A+ARA+ + + D+ ++++D S
Sbjct: 133 GLL-----DKAYQ--RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP-----ASS 180
Query: 775 NAIMG-----PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+M T I+ H V A AD +V + G++ + G A+L
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 6e-14
Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG 1278
++ +N+ + Y AL+DI +I ++G +G GKS++L R L P C
Sbjct: 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 1279 --GQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNL--DP-FH-MNDDLKIW 1330
G IL +G NI+++ V LR + +V Q P F S+ +N+ P H + +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+++EK +K ++ + +S +S S GQ+Q +C+AR L + +V+ +DE + +D
Sbjct: 124 TIVEKS-LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 1391 QTASILQNAISSECKGMTVITIAHRIS 1417
+ +++ I K TVI + H +
Sbjct: 183 IATAKIEDLIEDLKKEYTVIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 7e-14
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 28/214 (13%)
Query: 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILV 1283
F N+ + P L +IN IE G + I G TG+GK+S+L + L P G
Sbjct: 42 FSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG----- 92
Query: 1284 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1343
I GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 93 ----KIKH-----SGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDIT 143
Query: 1344 AVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAI 1400
+ T + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
Query: 1401 SSECKGM---TVITIAHRISTVLNMDEILILDHG 1431
CK M T I + ++ + D+ILIL G
Sbjct: 204 ---CKLMANKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 7e-14
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
E N VL +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPL 72
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVG---G 722
+ +PQ +I SGT R KN DP + E + +V + ++ G
Sbjct: 73 QKWRKAFGVIPQKVFIFSGTFR------KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPG 126
Query: 723 DMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDV---LSAVDAQVARWILSNAIM 778
+ ++ G LS G + + LAR+V + I +LD+ L + QV R L A
Sbjct: 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA 186
Query: 779 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
T IL H ++A+ +V+++ +V+
Sbjct: 187 DC-----TVILSEHRIEAMLECQRFLVIEENKVR 215
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 7e-14
Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 60/243 (24%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 673
+ + + VS + G ++ ++GE GSGKS+L +++G +L G SG
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG--LLPEGGRITSGEVILDGR 75
Query: 674 -----------------IAYVPQVPWIL---SGTIRDNI-----LFGKNYDPQSYSETLK 708
IA + Q P TI D I L GK ++ ++
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVN------LSGGQRARLALARAVYHGSDIYMLDDVLS 762
L+ VG + + LSGG R R+ +A A+ + + D+ +
Sbjct: 136 L--LE-----QVG-----LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 763 AVDAQVARWILSNAIMGPHMLQKTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817
A+D IL + + LQ+ + TH++ ++ AD VVVM KG++ G +
Sbjct: 184 ALDVTTQAQIL-DLLKD---LQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239
Query: 818 ADL 820
++
Sbjct: 240 EEI 242
|
Length = 539 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 8e-14
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 38/222 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
Q+ +L VSL +PKG + V+G G GK++LL +++G + + GSI G
Sbjct: 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE 71
Query: 674 -----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 723
IAYVPQ I T+ +N+L G L + + + V +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTG--------LAALPRRSRKIPDEIYELFPVLKE 123
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
M +G +G +LSGGQ+ +LA+ARA+ + +LD+ + + + I I L
Sbjct: 124 M--LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIR---RL 177
Query: 784 QKTR----ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ +L + A AD VM++G+V G+ +L
Sbjct: 178 RAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 13/213 (6%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +NVT R+ AL DI+F++E G G++G GAGK++ + + + G++L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1283 VDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
DG P+ R R +P+ L+ + D L LK + + E
Sbjct: 59 FDG-----KPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR--IDE 111
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+E + L + + S G +Q + A++ ++L LDE + +D +L++ I
Sbjct: 112 WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171
Query: 1401 SS-ECKGMTVITIAHRISTVLNM-DEILILDHG 1431
G TVI H++ V + D +L+L+ G
Sbjct: 172 RELARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 8e-14
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 20/200 (10%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
+ T G IVG +G+GKS++LN A F TP G++L++G+++ P D
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-ETP-QSGRVLINGVDVTAAPPADR--- 70
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1354
P S E +L +L ++ LK+ + + ++ + VGL K
Sbjct: 71 ----PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ-AIEVALARVGLAGLEKRL 125
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITI 1412
S G+RQ + LAR L++ VL LDE A +D + + + + MTV+ +
Sbjct: 126 PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185
Query: 1413 AHRISTVLNMDEILI-LDHG 1431
H+ + + ++ LD+G
Sbjct: 186 THQPEDAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 9e-14
Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 33/214 (15%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN---TPVRD 1295
A+ I+ T+ G +G+VG +G+GKS++ AL RL P G+I DG +I +R
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 1296 LRGRFAVVPQSPFLFEGSLRDNL-------DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL 1347
LR R VV Q P+ GSL + + +++ S E+ V E +E VGL
Sbjct: 361 LRRRMQVVFQDPY---GSLSPRMTVGQIIEEGLRVHE--PKLSAAERDQRVIEALEEVGL 415
Query: 1348 -----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQN 1398
+ E FS GQRQ I +ARAL+ +++ LDE T+ +D AQ +L++
Sbjct: 416 DPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471
Query: 1399 AISSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
+ G++ + I+H ++ V + ++++ G
Sbjct: 472 L--QQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503
|
Length = 534 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 46/240 (19%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I +NV+ Y + L D++ I G I+G GAGKS++L+ + RL G+I
Sbjct: 1 MITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL-------- 1333
+DGL + +TP ++L + +++ Q +N H+N L + ++
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQ----------EN----HINSRLTVRDLVGFGRFPYS 104
Query: 1334 -------EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
++ + E +E + LE S GQRQ +A L + + + LDE
Sbjct: 105 QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 1387 NVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLPHCG 1437
N+D Q IL+ + G T++ + H I N D I+ L +G + G
Sbjct: 165 NLDMKHSVQIMKILRRLA--DELGKTIVVVLHDI----NFASCYSDHIVALKNGKVVKQG 218
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 22/227 (9%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
I QNV+ Y+ P AL D+N TIE G+ +G TG+GKS+I+ L L G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1280 QILVDGLNIINTP----VRDLRGRFAVV---PQSPFLFEGSLRD-NLDP--FHMNDDLKI 1329
+ VD I +T ++ +R + +V P+S E L+D P F ++ +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1330 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
EK + VG+ E+ +++ S GQ + + +A L K+L LDE TA +
Sbjct: 123 ALAREKLAL------VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1389 DAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
D + L GMT++ + H + V N D + +L+ G L
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223
|
Length = 280 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIINTP- 1292
A+ I+ E ++G +G+GKS+ L +L R+ I GQIL G++I N
Sbjct: 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI-NRKE 93
Query: 1293 --VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1350
V ++R +V Q P F S+ +N+ +K VL++ V+ ++ L
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALWDQ 152
Query: 1351 VKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1406
VK+ S ++ S GQ+Q +C+ARA+ +L +DE + +D + L+ + K
Sbjct: 153 VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN 212
Query: 1407 MTVITIAH------RIS 1417
T+I + H R S
Sbjct: 213 YTIIIVTHNMQQAARAS 229
|
Length = 267 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+ L V+L + +G +VA+IG G+GKS+LL S+ G + T G I +G
Sbjct: 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75
Query: 674 -------IAYVPQVP-WILSGTIRDNILFGK-NYDP--QS----YSETLKACTLD----V 714
I + Q + ++ +N+L G+ Y +S +S+ KA LD V
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
I D AY + LSGGQ+ R+A+ARA+ I + D+ ++++D + A+ ++
Sbjct: 136 GIL-----DKAYQ--RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T I+ H V A AD ++ + G++ + G +++L
Sbjct: 189 ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 54/230 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
L VSL +PKG + +IG G+GKS+L+ I G T GS+ G
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 673 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 720
I + Q +LS T+ +N+ K + E L+ +V
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE----------LV 128
Query: 721 G----GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 774
G D AY LSGGQ+ R+ +ARA+ + + + D+ SA+D + + IL+
Sbjct: 129 GLEDKAD-AYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183
Query: 775 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
N +G T +L TH ++ + D V VM+KG+V G+ ++
Sbjct: 184 RDINRELGL-----TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
++ +L+ +SL L G ++A+ G+ G+GK++L + G + + GSI +G
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER 69
Query: 673 --SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
SI YV Q + + ++R+ +L G L D+
Sbjct: 70 RKSIGYVMQDVDYQLFTDSVREELLLGL--KELDAGNEQAETVLK---------DLDLYA 118
Query: 729 EKGVN---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPH 781
K + LSGGQ+ RLA+A A+ G D+ + D+ S +D +V I A G
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG-- 176
Query: 782 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVK 812
K I+ TH+ + ++ D V+++ G +
Sbjct: 177 ---KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E + ++ R+ A++D++ + G VG++G GAGK+++ N + G +
Sbjct: 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 1282 LVDGLNIINTPVRDLRGRFAVVP--QSPFLFEG-SLRDN-LDPFHMNDDLKIWSVL-EKC 1336
+ G +I P R + Q LF G ++ +N H L + +L
Sbjct: 62 IFRGRDITGLPPH-RIARLGIARTFQITRLFPGLTVLENVAVGAHAR--LGLSGLLGRPR 118
Query: 1337 HVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
KEE EA VGL + S GQ++ + +ARAL K+L LDE A
Sbjct: 119 ARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178
Query: 1387 NVDAQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHG 1431
++ + L I + G+T++ I H + V+ + D I++L++G
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 24/210 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1278
+E +N+ + Y AL+DIN I ++G +G GKS+ L L R+ +
Sbjct: 5 MESKNLNLWY--GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 1279 -GQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI--- 1329
G++L+DG NI + V +LR R +V Q P F S+ DN+ H D K
Sbjct: 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK 122
Query: 1330 ---WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
W+ L+K + +EV+ +K+S + S GQ+Q +C+AR + V+ +DE T+
Sbjct: 123 IVEWA-LKKAALWDEVK-----DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAHRI 1416
+D + +++ + K T++ + H +
Sbjct: 177 ALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 10/217 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+++ + + Y AL IN I+ G I+G GAGKS++ L + G+I
Sbjct: 5 ILKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1282 LVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1337
L DG ++ + LR +V Q P LF S+ ++ +N L V ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-- 121
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D S +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 1398 NAISSECKGM--TVITIAHRISTV-LNMDEILILDHG 1431
+ K + T+I H I V L D + ++ G
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNI--INT 1291
L DIN I +G +G GKS+ L R+ P C G++ +DG+++ ++T
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH--MNDDLKIWSVLEKCHVKEEVEAVG 1346
V LR + +V Q P F S+ DN+ H + K+ ++EK + +VG
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-----SLTSVG 134
Query: 1347 L----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
L +K+S S GQ+Q +C+ARA+ +L +DE + +D ++++N I
Sbjct: 135 LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
Query: 1403 ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
K T+I + H + + D + G +
Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226
|
Length = 251 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNII--NTP 1292
L ++N I + ++G +G GKS+ + L R+ + G I +DG++I
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1348
V +LR + +V Q P F S+ DN L +D+ I V+E ++A L
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER-----VEESLKAAALW 133
Query: 1349 TFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1404
VK+ S + S GQ+Q +C+AR + S +V+ +DE + +D + + +++ I
Sbjct: 134 DEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK 193
Query: 1405 KGMTVITIAHRI 1416
+ T++ + H +
Sbjct: 194 EDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 44/209 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 679
L VSL + G LV V+G G GK++LLN I G + + GSI +G P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 680 ------VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+PW+ + DN+ FG + + E V + G + YI +
Sbjct: 80 FQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE---GAEHKYIWQ- 132
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---------WILSNAIMGPH 781
LSGG R R+ +ARA+ + +LD+ A+DA W +
Sbjct: 133 ---LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG------ 183
Query: 782 MLQKTRILCTHNV-QAISAADMVVVMDKG 809
K +L TH++ +A+ A +VV+ G
Sbjct: 184 ---KQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTPVR 1294
L +N I T ++G +G+GKS++L RL G++ +DG +I V
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 1295 DLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1352
+LR R +V Q P S+ +N+ +N +K L++ V+ +E L VK
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-RVRWALEKAQLWDEVK 137
Query: 1353 ES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1408
+ S GQ+Q +C+ARAL +VL DE TAN+D + + +++ K MT
Sbjct: 138 DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMT 197
Query: 1409 VITIAH 1414
++ + H
Sbjct: 198 IVLVTH 203
|
Length = 250 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 26/223 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTPV 1293
ALH ++ I G V ++G +G+GKS++L L L + ++L +
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78
Query: 1294 RDLRGRFAVVPQSPFLFEG-------SLRDNL-------DPFHMNDDLKIWSVLEKCHVK 1339
RD+R A + ++F+ S+ +N+ PF ++ +K
Sbjct: 79 RDIRKSRA---NTGYIFQQFNLVNRLSVLENVLIGALGSTPF-WRTCFSWFTREQKQRAL 134
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ + VG+ F + + S GQ+Q + +ARAL++ +KV+ DE A++D ++A I+ +
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 1400 IS--SECKGMTVITIAHRISTVLNMDE-ILILDHGHLPHCGCA 1439
+ ++ G+TV+ H++ L E I+ L GH+ + G +
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
Length = 262 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-13
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 63/241 (26%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL------------ 1270
IE +N+T ++ L +I+FTIE G +GI+GR+GAGKS +++ L
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1271 --FRLT------------------PICGGQ---ILVDGLNIINTPVRDLRGRFAVVPQSP 1307
+ + P+CGG VD N+ + R +R R A++ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1308 FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------------VKEEVEAVGLETFVKESG 1355
F G DD + +VLE + +E V L +
Sbjct: 119 FALYG------------DDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA 1413
S G++Q + LAR L K + DE T +D QTA ++ NA+ K G++++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 1414 H 1414
H
Sbjct: 227 H 227
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-13
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 63/312 (20%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP---- 678
V++ + L + G + ++G G GK+++L I G G I G I +VP
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86
Query: 679 QVPWILSG-------TIRDNILFG--------KNYDPQSYSETLKACTLDVDISLMVGGD 723
V + T+ +N+ FG P+ E L+ L+ +
Sbjct: 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR-VMEALRMVQLE---------E 136
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A K LSGGQ+ R+A+ARAV + + +LD+ LSA+D ++ R + N + L
Sbjct: 137 FA--QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL-RKQMQNEL---KAL 190
Query: 784 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS-------SADLAVSLYSGFWST 831
Q+ T + TH+ +A++ +D +VVM G+++ G+ +L V+ + G
Sbjct: 191 QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIG--EI 248
Query: 832 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQ-----------EIIEVEQRK 880
N FD ++ + E R A+ ++ + V EI + E +
Sbjct: 249 NIFDATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDEHAE 308
Query: 881 E--GRVELTVYK 890
G V YK
Sbjct: 309 GLIGYVRERNYK 320
|
Length = 375 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-13
Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 35/244 (14%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I NV R+ + A L DI+ I+ G V ++G +GAGKS++L + L G+I
Sbjct: 3 IRINNVKKRF-GAFGA-LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 1283 VDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKI-WSV 1332
++G ++ N VRD R + V Q LF HM D+ LK+
Sbjct: 61 LNGRVLFDVSNLAVRD-R-KVGFVFQHYALF----------PHMTVADNIAFGLKVRKER 108
Query: 1333 LE----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ V+E + V LE S GQRQ + LARAL KVL LDE +
Sbjct: 109 PSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 1389 DAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGCAA----A 1441
DA+ L+ + + G+T + + H L + D +++L+ G + G
Sbjct: 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228
Query: 1442 PNGP 1445
P
Sbjct: 229 PASR 232
|
Length = 345 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-13
Identities = 65/237 (27%), Positives = 96/237 (40%), Gaps = 26/237 (10%)
Query: 1213 LSPDWPF----QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1268
LS ++P GL N K A+ DI+F I G VG +G GAGKS+ L
Sbjct: 9 LSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLK 68
Query: 1269 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF---EGSLRDN--LDPFHM 1323
L L G++ V+G + P R R + + D LD +
Sbjct: 69 MLTGLLLPTSGKVRVNGKD----PFRR---REEYLRSIGLVMGQKLQLWWDLPALDSLEV 121
Query: 1324 NDDLKIWSVLEKCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379
I+ + + E E + LE F+K S+GQR LA ALL KVL
Sbjct: 122 LK--LIYEIPDD-EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178
Query: 1380 CLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHL 1433
LDE T +D + ++ + + TV+ H + + D +L++D G L
Sbjct: 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL 235
|
Length = 325 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 6e-13
Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1280
+ V Y+ LP + + G V I+G +GAGKS++LN A F + P G
Sbjct: 1 LALDKVRYEYE-HLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGF-IEPA-SGS 54
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
I V+ + + +++ Q LF ++R N+ ++ LK+ + ++ V
Sbjct: 55 IKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVV 110
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ + VG+ ++ S GQRQ + LAR L++ + +L LDE + +D +
Sbjct: 111 DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 1400 ISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ C + T++ + H +S + +I ++ G +
Sbjct: 171 VKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+ + +N+T R+ + + ++N TI+ GT V ++G +G GK+++L + L G
Sbjct: 4 KNFVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61
Query: 1280 QILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEK 1335
QI +DG ++ + + RD+ +V QS LF SL +N+ M L + K
Sbjct: 62 QIFIDGEDVTHRSIQQRDI----CMVFQSYALFPHMSLGENVGYGLKM---LGVPKEERK 114
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
VKE +E V L F S GQ+Q + LARAL+ KVL DE +N+DA
Sbjct: 115 QRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-13
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 642 VIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG--------------T 687
++G G GK++LL + G GSI G V VP L T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE--DVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 688 IRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747
+ +N+ FG +K L+ + L+ + A K LSGGQ+ R+ALARA
Sbjct: 59 VEENVAFGLKMRKVP-RAEIKPRVLEA-LRLVQLEEFA--DRKPHQLSGGQQQRVALARA 114
Query: 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVM 806
+ I +LD+ LSA+D ++ + L T + TH+ +A++ +D + +M
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 807 DKGQVKWIGSSADL 820
KG++ IG+ ++
Sbjct: 175 RKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 6e-13
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------- 679
L V+L + +G +++IG G GKS+LLN I G T G + G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGV 732
+PW+ T+R+NI + S++ + ++ I+L+ + A G+
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ--- 114
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 790
LSGG + R+A+ARA+ + +LD+ A+DA + R L +M + ++ R+
Sbjct: 115 -LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA-LTRGNLQEELM--QIWEEHRVTVLM 170
Query: 791 -THNV-QAISAADMVVVMDKGQVKWIG 815
TH+V +A+ +D VV++ G IG
Sbjct: 171 VTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 7e-13
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V L+ VS + G + +IG G+GK++L N I G + T GS+ G
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 674 ---IAYVPQVPWILSG-TIRDNILFG------KNYDPQSYSETLKACTLDVDISL-MVG- 721
I Q+P + T+ +N++ + + L VG
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAI 777
D+A LS GQ+ RL +ARA+ + +LD+ + ++ ++A I
Sbjct: 134 ADLAD--RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191
Query: 778 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 811
G T +L H++ + S AD V V+D+G+V
Sbjct: 192 RG-----ITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 8e-13
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSL-------LNSILGEMMLTHGSIHASG- 672
E+ ++VL +++ + G V ++G G+GKSSL S GE+++ +I G
Sbjct: 1296 EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL 1355
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSE-----TLKACTLDVDISLMVG 721
I +PQ P + SG++R N+ DP YS+ L+ L +S +
Sbjct: 1356 HDLRFKITIIPQDPVLFSGSLRMNL------DPFSQYSDEEVWWALELAHLKTFVSALPD 1409
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
E G NLS GQR + LARA+ + I +LD+ +AVD + I + +
Sbjct: 1410 KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI--QSTIRTQ 1467
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
T + H + I V+V+DKG+V G+ ++L
Sbjct: 1468 FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 8e-13
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG- 1278
I QNVT+ Y A+ ++ I G ++G +G GKS++L +L R L C
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1279 -GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1328
G++L DG ++ + PV ++R R +V Q P F S+ +N+ + + + D
Sbjct: 72 KGRVLFDGTDLYDPRVDPV-EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 1329 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ L K V +E + + ESG S S GQ+Q +C+AR + +V+ +DE + +
Sbjct: 131 VERSLRKAAVWDECKDK-----LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSAL 185
Query: 1389 DAQTASILQNAISSECKGMTVITIAH 1414
D + ++ + K T++ + H
Sbjct: 186 DPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 8e-13
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG---SIHASGSIAYVPQVP 681
V++ +S +P G+ + + G G GKSSL ILGE+ +G + A G + YVPQ P
Sbjct: 466 VLIESLSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRP 524
Query: 682 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAYIGEKGVN------- 733
++ GT+RD I++ P S + + D D ++ + +I E+
Sbjct: 525 YMTLGTLRDQIIY-----PDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW 579
Query: 734 ---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
LSGG++ R+A+AR YH +LD+ SAV V ++
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 9e-13
Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 32/202 (15%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTP--ICGGQILVDGLNIINTPV 1293
AL +IN I +G +G GKS++L N ++ L P G+IL+DG NI+ TP
Sbjct: 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL-TPK 86
Query: 1294 RD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVG 1346
+D LR + +V Q P F S+ DN+ F ++++ L + + E VE
Sbjct: 87 QDIALLRAKVGMVFQKPTPFPMSIYDNI-AF----GVRLFEKLSRAEMDERVEWALTKAA 141
Query: 1347 LETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA-QTASILQNAIS 1401
L VK+ SG S S GQ+Q +C+AR + +VL LDE + +D T I + +
Sbjct: 142 LWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE--LI 199
Query: 1402 SECKG-MTVITIAHRISTVLNM 1422
+E K TV+ + H NM
Sbjct: 200 TELKQDYTVVIVTH------NM 215
|
Length = 260 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 54/239 (22%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
+ L+ VSL +PKG + +IG G+GKS+LL I T GS+ G
Sbjct: 11 FGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDL 70
Query: 673 -------------SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACT 711
I + Q +LS T+ +N+ F K Q +E L+
Sbjct: 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLE--- 127
Query: 712 LDVDISLMVGGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+VG + +K LSGGQ+ R+A+ARA+ + I + D+ SA+D +
Sbjct: 128 -------LVG-----LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 768 VARWILS-----NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
+ IL N +G T +L TH ++ + D V V+D+G++ G+ +++
Sbjct: 176 TTQSILELLKDINRELG-----LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 30/225 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673
L+ VS + G VA++G G+GKS+L + + + G I +G
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75
Query: 674 IAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ V Q P + L ++R N+ + + S + ++ + + A +K
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRY--HAALHGLSRAEARARIAELLARLGLAERA--DDKVR 131
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 790
L+GG R R+ +ARA+ H + +LD+ +D I ++ L + + L
Sbjct: 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV----RALARDQGLSVL 187
Query: 791 --THNVQAISAADMVVVMDKGQVKWIGSSADL-----AVSLYSGF 828
TH V I A D +VV+ +G+V G++A+L L + F
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAF 232
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-12
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVP 678
+ ++L +S + +G +A++G G+GKS+LL + GE+ G++ + I Y
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFD 391
Query: 679 Q--VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-L 734
Q T+ + + + D Q L G+ EK V L
Sbjct: 392 QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLG--------RFGFTGEDQ---EKPVGVL 440
Query: 735 SGGQRARLALARAVYHGSDIYMLD 758
SGG++ARL LA+ + ++ +LD
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLD 464
|
Length = 530 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPWILSGTIR 689
L +G + A++G GSGKS+LLN I G G + +G + P +S +
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 690 DNILFGKNYDPQSY----SETLKACTLD---VDISLMVGGDMAYIGEKGVNLSGGQRARL 742
+N LF Q+ S LK D ++++L G LSGG+R R+
Sbjct: 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHNVQAISA-A 800
ALAR + + +LD+ +A+D R + + ++ H K T ++ TH + A
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDP-ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196
Query: 801 DMVVVMDKGQVKWIG 815
VV +D G++ G
Sbjct: 197 QRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 651 SSLLNSILGEMMLTHGSIHASG--------------SIAYVPQVPWI-LSGTIRDNILFG 695
S+LL I G + T G+I G I V Q P + T+R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 696 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
+ +A VG E LSGGQ+ R+A+ARA+ +
Sbjct: 61 LRDKEAD-ARAEEALE-------RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 756 MLDD 759
+LD+
Sbjct: 113 LLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 24/191 (12%)
Query: 1255 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL 1314
++G +G GK+++L L G I++DG ++ N P LR +V QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-HLRH-INMVFQSYALFP--- 55
Query: 1315 RDNLDPFHMNDD------LKIWSVLE---KCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365
HM + LK+ V K V E + V LE F S GQ+Q
Sbjct: 56 -------HMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQR 108
Query: 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM- 1422
+ LARAL+ K+L LDE + +D + +Q + + E G+T + + H + M
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 1423 DEILILDHGHL 1433
D I I+ G +
Sbjct: 169 DRIAIMRKGKI 179
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 53/231 (22%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
VL V L + +G ++A+IG GSGKS+LL I+G + G + G
Sbjct: 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAEL 72
Query: 674 ------IAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG 721
+ + Q SG T+ +N+ F P L + +I L
Sbjct: 73 YRLRRRMGMLFQ-----SGALFDSLTVFENVAF-----PLREHTRLSEEEIR-EIVLEK- 120
Query: 722 GDMAYIGEKGV------NLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 771
+ +G +G LSGG + R+ALARA+ ++ + D+ + +D +
Sbjct: 121 --LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 772 ILS-NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
I S L T I+ TH++ + AD + V+ G++ G+ +L
Sbjct: 179 IRSLKK-----ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 3e-12
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
E+++ LN VS + +G +++IG GSGKS+ + I G + G I G
Sbjct: 15 KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE 74
Query: 674 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P + T+ D++ FG + E + V+ +L + G
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER----VNEALELVGM 130
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 782
+ + LSGGQ+ R+A+A AV I +LD+ S +D + R L I G
Sbjct: 131 QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLELIKTIKGIRDD 189
Query: 783 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
Q T I TH++ ++ +D V+VM GQV+ + +L
Sbjct: 190 YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 12/221 (5%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E +N+T + A+ D++ TI G ++G +G GKS++L L GQI
Sbjct: 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 1282 LVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
++DG+++ + P R + F QS LF + F + D K+ V
Sbjct: 77 MLDGVDLSHVPPYQRPINMMF----QSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVN 131
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
E + V ++ F K S GQRQ + LAR+L K K+L LDE +D + +Q
Sbjct: 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191
Query: 1400 ISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ E G+T + + H + M I I++ G G
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232
|
Length = 377 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------ 678
VL V + G V + G GSGKSSL + + + G I G I+ +P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 679 ------QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
Q P + SG+IR N+ E L+ L + + GG A + E G
Sbjct: 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGE 155
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
N S GQR LARA S I ++D+ +++D IL +M +T + H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN-ILQKVVMTA-FADRTVVTIAH 213
Query: 793 NVQAISAADMVVVMDKG 809
V I AD+V+V+ +G
Sbjct: 214 RVSTILDADLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 40/153 (26%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS----IHASGSIAYV 677
+ V+L +S + G + + G G+GKSSL ++ G + GS + + ++
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGMPEGEDLLFL 69
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
PQ P++ GT+R+ +++ P DV LSGG
Sbjct: 70 PQRPYLPLGTLREQLIY-----PWD----------DV-------------------LSGG 95
Query: 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
++ RLA AR + H LD+ SA+D +
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESED 128
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 4e-12
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 48/191 (25%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
L+ VSL + +G + A++GE G+GKS+L+ + G G I
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL--------------- 58
Query: 685 SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744
+ GK S + +A G M Y LS G+R + +
Sbjct: 59 --------VDGKEVSFASPRDARRA-----------GIAMVY------QLSVGERQMVEI 93
Query: 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNVQAISA-A 800
ARA+ + + +LD+ +A+ + ++ L+ I +H + + A
Sbjct: 94 ARALARNARLLILDEPTAALTPAEVERLF--KVI--RRLRAQGVAVIFISHRLDEVFEIA 149
Query: 801 DMVVVMDKGQV 811
D V V+ G+V
Sbjct: 150 DRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 27/208 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 685
L +P G +VA++G G+GKS+LLN I G G I + S V +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 686 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 734
T+ NI G S LK + VG ++ L
Sbjct: 79 ENNLFAHLTVAQNIGLGL-------SPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGEL 130
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHN 793
SGGQR R+ALAR + I +LD+ SA+D R + + +K T ++ TH+
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 794 VQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ A AD VV +D G++ GS+ +L
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 10/207 (4%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1296
++D + I G I+G +G+GKS+ + L RL GQI +DG NI+ +L
Sbjct: 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 1297 --RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAVGLETFVKE 1353
R + +V Q LF L + +L W E K E ++ VGLE +
Sbjct: 68 VRRKKIGMVFQQFALFPH--MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR 125
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
S G +Q + LARAL +L +DE + +D +Q+ + T++
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1412 IAHRISTVLNM-DEILILDHGHLPHCG 1437
I H + + + D I+I+ G + G
Sbjct: 186 ITHDLDEAIRIGDRIVIMKAGEIVQVG 212
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 33/233 (14%)
Query: 1223 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
I F NV+ Y+ P A+HD+N E G IVG+TG+GKS++ +NAL + T
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT- 61
Query: 1277 CGGQILVDGLNIINTP----VRDLRGRFAVVPQSP--FLFEGSLRDNLD--PFHMNDDLK 1328
G + VD + I + +R +R R +V Q P LFE ++ + P + +L
Sbjct: 62 --GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119
Query: 1329 IWSVLEKCHVKEEVEAVGLE-----TFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
VK + ++ + +S S GQ + I + L + ++ LDE
Sbjct: 120 --------EVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 1384 CTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHL 1433
TA +D Q+ + + S + T+I ++H ++ V DE++++ G +
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224
|
Length = 286 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-12
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 17/201 (8%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL +++F + G VG +G GAGKS+ + + P G + V G +++ P +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 1299 RFAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVEAVGL--ETFV 1351
+P+ +P + +R+ L + M L K V+E +E VGL E
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLL------KQRVEEMIELVGLRPEQHK 129
Query: 1352 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1411
K + S G RQ + LA+AL+ KVL LDE T +D ++N I + K T+I
Sbjct: 130 KIGQL--SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187
Query: 1412 IAHRISTVLNM-DEILILDHG 1431
H + V + D ++I++ G
Sbjct: 188 STHIMQEVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 4e-12
Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 21/215 (9%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTPV 1293
ALH I+ E ++G +G GKS+ L L R+ G+I +G NI + +
Sbjct: 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 1294 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE------AV 1345
+LR +V Q P F S+ DN+ LKI V +K + + VE A+
Sbjct: 79 DLVELRKEVGMVFQQPTPFPFSVYDNV-----AYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 1346 GLET--FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
ET + + +FS GQ+Q IC+ARAL KV+ LDE T+ +D ++S ++ +
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 1404 CKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
T I + H + + D+ L +G L G
Sbjct: 194 KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 29/234 (12%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1280
+I +N++ L ++ + G + I+G GAGKS++L AL L+P G+
Sbjct: 1 MIRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGE 57
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
+ ++G+ + + P +L AV+PQ+ PF + ++ P + ++
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE----PEEDE 113
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------SSKVLCLDECTANVD 1389
+ + A L + S G++Q + LAR L + S + L LDE T+ +D
Sbjct: 114 RIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 1390 -AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLPHCG 1437
A L+ A +G V+ + H LN+ D I++L G + G
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHD----LNLAAQYADRIVLLHQGRVIASG 223
|
Length = 259 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-12
Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 16/205 (7%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L D++ ++ G ++G TG+GKS++L +L I G++ +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER-------------S 722
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1357
A VPQ ++ ++R N+ F D ++ + ++ ++ + GLET + E G++
Sbjct: 723 IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN 782
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRI 1416
S GQ+ + LARA+ + V LD+ + +DA +++ G T + H++
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 1417 STVLNMDEILILDHGHLPHCGCAAA 1441
V D ++ L G + G +A
Sbjct: 843 HVVPRADYVVALGDGRVEFSGSSAD 867
|
Length = 1560 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 5e-12
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 44/226 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 681
VL +SL + KG +V +IG GSGKS+LL + G GSI G + +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 682 WILSG--------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGGD 723
+ T+ +N+ K E L+ VG
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL-LE-----KVG-- 125
Query: 724 MAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSN 775
+ +K LSGGQ+ R+A+ARA+ + + D+ SA+D +V +
Sbjct: 126 ---LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 776 AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
A G T I+ TH + A AD V+ MD+G++ G +
Sbjct: 183 AEEG-----MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSS---LLNSILGEMMLTHGSIHASG---------- 672
LN +S +P+GS A+IG GSGKS+ L+N +L + I G
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
+ V Q P + T+ D++ FG E +K V L G + YI
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI----VRDVLADVGMLDYI 137
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
+ NLSGGQ+ R+A+A + I +LD+ S +D IL T
Sbjct: 138 DSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTV 197
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I TH++ + AD V+V+D G++ GS ++
Sbjct: 198 ISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 22/212 (10%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+ +IE +N+ + Y AL++IN I + ++G +G GKS+ L L R+ + G
Sbjct: 5 EAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG 62
Query: 1280 -----QILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLD---PFH-MNDDLK 1328
++ +G NI N + +LR + +V Q+P F S+ DN+ H D K
Sbjct: 63 IKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKK 122
Query: 1329 IWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
+ ++E+ K L VK+ + +S S GQ+Q +C+AR L V+ +DE
Sbjct: 123 LDEIVEQSLKKS-----ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAHRI 1416
T+ +D + ++ I + + T+I + H +
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 5e-12
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 15/224 (6%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICG-- 1278
+IE +N + Y A+ ++ I I+G +G GK+++L ++ R+ I G
Sbjct: 3 IIEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1279 --GQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G+I G +I + V + R + +V Q P F S+ DN+ +K L+
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1335 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ V+E ++ L VK + G S GQ+Q +C+ARAL +V+ LDE T+ +D
Sbjct: 121 RI-VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 1391 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
++ + + T++ + H I + + D I + G L
Sbjct: 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-12
Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RD 1295
AL DI+ +++ G V ++G +G GK+++L + L G I G +I P RD
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77
Query: 1296 LRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1350
+ +V QS LF ++ DN L M V E+ V E ++ VGL
Sbjct: 78 ----YGIVFQSYALFPNLTVADNIAYGLKNRGMGRA----EVAER--VAELLDLVGLPGS 127
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1408
++ S GQ+Q + LARAL S +L LDE + +DA+ L+ I + G+T
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187
Query: 1409 VITIAHRISTVLNM-DEILILDHG 1431
I + H L+M D I++++HG
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHG 211
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 6e-12
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 28/216 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
++D + +E G I+G +G+GKS+++ L RL G+ILVDG +I +LR
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 1299 ----RFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV-LEKCHVK--EEVEAV 1345
+ ++V QS L P H ++ L++ V + + E +E V
Sbjct: 103 LRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPKAEREERALEALELV 152
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AISS 1402
GLE + + S G +Q + LARAL +L +DE + +D + +Q+ + +
Sbjct: 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 1403 ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ K T++ I H + L + D I I+ G + G
Sbjct: 213 KLK-KTIVFITHDLDEALRIGDRIAIMKDGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-12
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 45/227 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
++ VS L +G + ++GE GSGKS+L + G + + GSI G
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 674 ---IAYVPQVP-----------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I V Q P IL+ +R + +E L+ L +
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF--- 422
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
D Y E LSGGQR R+A+ARA+ + +LD+ +SA+D V +L N +
Sbjct: 423 --LDR-YPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-NLLKD 474
Query: 780 PHMLQK----TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
LQ+ T + +H++ + AD V VM G++ G + +
Sbjct: 475 ---LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVF 518
|
Length = 539 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 63/236 (26%), Positives = 90/236 (38%), Gaps = 44/236 (18%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
GLI + K AL I+FTIE G VG +G GAGK++ L L L G+
Sbjct: 18 GLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE 77
Query: 1281 ILVDGLNIINTPVRDLRGRFAVV------------PQSPFLFEGSLRD--NLDPFHMNDD 1326
+ V GL + + R VV F L +L P
Sbjct: 78 VRVAGL-VPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL---LAAIYDLPPARF--- 130
Query: 1327 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
K + E E + LE + S+GQR +A ALL ++L LDE T
Sbjct: 131 --------KKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
Query: 1387 NVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEI-------LILDHGHL 1433
+D ++N + + G TV+ +H M +I L++D G L
Sbjct: 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSH------YMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 8e-12
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 24/221 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+ V+ Y A ++ ++FT+ G G++G GAGKS+I + +T G+I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1341
V G+ + R R R VVPQ DNLD F + ++L ++ + E
Sbjct: 100 VLGVP-VPARARLARARIGVVPQF---------DNLDLEFTVRENLLVFGRYFGMSTR-E 148
Query: 1342 VEAV--------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
+EAV LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 1394 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGH 1432
++ + S +G T++ H + + D + +L+ G
Sbjct: 209 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
|
Length = 340 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 30/212 (14%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG-LNIINTPVRDLR 1297
AL+D++F+++ G ++G GAGK+++++ + T G++L DG ++ P +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 1298 ----GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEA 1344
GR F Q P +FE ++R+NL+ +N D +++ L E+ + E +
Sbjct: 80 RAGIGRKF----QKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLAT 134
Query: 1345 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DAQTASI--LQNAIS 1401
+GL S GQ+Q + + L + K+L LDE A + DA+T L +++
Sbjct: 135 IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194
Query: 1402 SECKGMTV-------ITIAHRISTVLNMDEIL 1426
+ + V IA ++ TVL+ +L
Sbjct: 195 GKHSILVVEHDMGFVREIADKV-TVLHEGSVL 225
|
Length = 249 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-11
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 37/219 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL+ +S + V ++G G+GKSS+LN++ + L G I G
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313
Query: 673 SIAYVPQVPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ +PQ P + SGT+R N+ F ++ D + +A DV +G D A + E G
Sbjct: 1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLD-AEVSEAG 1372
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI--- 788
N S GQR L+LARA+ S I +LD+ +AVD + ++A+ +QKT I
Sbjct: 1373 ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR------TDAL-----IQKT-IREE 1420
Query: 789 --LCT-----HNVQAISAADMVVVMDKGQVKWIGSSADL 820
CT H + I D ++V+D G+V + +L
Sbjct: 1421 FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL 1459
|
Length = 1622 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 35/219 (15%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPV 1293
A+ I+F IE G + +VG +G+GKS ++ L P G IL DG +++
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 1294 RDLRG----RFAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEA 1344
R LRG + ++ Q P +L+P H + + L++ L + +
Sbjct: 85 RQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARALE 137
Query: 1345 ----VGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1393
VG+ E + S GQRQ + +A AL +L DE T +D AQ
Sbjct: 138 LLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
+L+ + +E GM ++ I H + V D + ++ HG
Sbjct: 198 DLLKE-LQAE-LGMAILFITHDLGIVRKFADRVYVMQHG 234
|
Length = 534 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 17/206 (8%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1296
AL++++ + G G++G +GAGKS+++ + L G ++VDG ++ +L
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 1297 -RGRFAVVPQS-PFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCH--VKEEVEAVGLETFV 1351
R + ++ Q L ++ N+ P +++ K ++ V E + VGL
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-----DEIKRKVTELLALVGLGDKH 134
Query: 1352 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMT 1408
+ S GQ+Q + +ARAL + KVL DE T+ +D A T SIL+ I+ G+T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLT 193
Query: 1409 VITIAHRISTVLNM-DEILILDHGHL 1433
++ I H + V + D + ++ +G L
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1276
+I +V + Y AL I+ ++G +G GKS+ L L R+ +
Sbjct: 5 IITSSDVHLFYGKF--EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 1277 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G + + G NI N V LR + +V Q P F S+ +N+ L++ V +
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIY-----GLRLAGVKD 117
Query: 1335 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
K + E VE + VK ES +S S GQ+Q +C+AR L V+ LDE T+
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAHRIS 1417
+D +++ ++N + T+I + H +
Sbjct: 178 ALDPISSTQIENMLLELRDQYTIILVTHSMH 208
|
Length = 252 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 24/208 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1277
+E +N+ + Y AL DI+ I +G +G GKS++L R L C
Sbjct: 26 LEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 1278 GGQILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
G+I +DG NI D LR R +V Q P F S+ +N+ L++ +
Sbjct: 84 EGEIRLDGQNI-YDKKVDVAELRRRVGMVFQRPNPFPKSIYENV-----VYGLRLQGINN 137
Query: 1335 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
+ + E VE L VK E+ S GQ+Q + +ARA+ +VL LDE T+
Sbjct: 138 RRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAH 1414
+D + ++ I+ T++ + H
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ +N++ RY ++ ++ +++ G VG++G GAGK++ + L G+IL
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1283 VDGLNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCH 1337
+DG +I P+ R R + +PQ +F ++ +N+ K EK
Sbjct: 59 LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EK-- 113
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
++E +E + K S S G+R+ + +ARAL + K L LDE A VD +Q
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 1398 NAI 1400
I
Sbjct: 174 KII 176
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 46/204 (22%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1293
L +N TI+ G ++G G+GKS++ + + +T G+IL G +I + P
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72
Query: 1294 -RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1352
R G F + Q P E+ V F++
Sbjct: 73 ERARLGIF-LAFQYP--------------------------------PEIPGVKNADFLR 99
Query: 1353 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS---SECKGMTV 1409
FS G+++ + + LL + LDE + +D ++ I+ E K + +
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 1410 ITIAHRISTVLNMDEILILDHGHL 1433
IT R+ + D + +L G +
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRI 183
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 23/207 (11%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----SIAYVPQ 679
++ VS + G + ++G G+GK++ L + G + G G A +
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78
Query: 680 VPWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA-YIGE 729
+S T R+N+ F Y + + L A L+ + M +
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLK--GDELTA-RLEELADRL---GMEELLDR 132
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
+ S G R ++A+ARA+ H + +LD+ + +D R L I L K +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR-ALREFIRQLRALGKCILF 191
Query: 790 CTHNVQAISA-ADMVVVMDKGQVKWIG 815
TH +Q + D VVV+ +G+V + G
Sbjct: 192 STHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 47/239 (19%)
Query: 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
L++ +N+ RY+ L ++ +I G V IVG +G+GKS++L+ L L G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 1280 QILVDG--LNIINTPVR-DLRGR-FAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVL 1333
++L +G L+ +++ R LR + + Q FH + D ++ L
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQ---------------FHHLLPD----FTAL 101
Query: 1334 E------------KCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377
E KE +E VGLE + S G+RQ + +ARAL+
Sbjct: 102 ENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161
Query: 1378 VLCLDECTANVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
++ DE T N+D A I+ + + + E + + + H + +D +L + G L
Sbjct: 162 LVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 26/199 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNIINT-- 1291
AL D++ I ++G +G GKS+ L + R L G++ G N+ +
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113
Query: 1292 -PVRDLRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEA 1344
PV LR R +V Q P F S+ DN + + + D ++ L + + +EV+
Sbjct: 114 DPVA-LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD 172
Query: 1345 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1404
+ SG+ S GQ+Q +C+ARA+ +V+ +DE + +D S +++ I
Sbjct: 173 Q-----LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1405 KGMTVITIAH------RIS 1417
+ TV+ + H RIS
Sbjct: 228 EEYTVVIVTHNMQQAARIS 246
|
Length = 285 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 45/235 (19%)
Query: 1223 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
I+ +N+ + LP AL +++ I G + I+G+TG+GK++ LNAL L P
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPD 60
Query: 1277 CG-----------------GQILVDGLNIINTPVR------DLRGRFAVVPQSPF----L 1309
G + +++ L I T + ++R R VV Q F L
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ--FAEYQL 118
Query: 1310 FEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLI 1366
FE ++ ++ P M + ++ + +E VGL E++++ S S GQ++ +
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKE--EAKKR--AAKYIELVGLDESYLQRSPFELSGGQKRRV 174
Query: 1367 CLARALLKSSKVLCLDECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVL 1420
LA L L DE TA +D Q IL+ + +G T+I + H + VL
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL 229
|
Length = 305 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 41/231 (17%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 672
LP + A+ G GSGK++L+ I G G I +G
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 673 SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I YV Q + ++R N+ +G K P + + + I ++G +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG--------R 127
Query: 731 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM---LQKT 786
LSGG++ R+A+ RA+ + ++D+ L+A+D IL P++ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL------PYLERLHAEF 181
Query: 787 RILC---THNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNE 833
I +H++Q + AD VVV++ G+V G A++ S + + +
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLARED 232
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 22/213 (10%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------INTPVRD 1295
D +FT+ G I GR+G+GK++++ + LT G+I+++G + I P
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE- 73
Query: 1296 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKE 1353
+ R V Q LF S+R NL +K E+ E V E +G+ +
Sbjct: 74 -KRRIGYVFQEARLFPHLSVRGNL-----RYGMKRARPSERRISFERVIELLGIGHLLGR 127
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTV 1409
S G++Q + + RALL S ++L +DE A +D + L+ + +E G+ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER-LHAEF-GIPI 185
Query: 1410 ITIAHRISTVLNM-DEILILDHGHLPHCGCAAA 1441
+ ++H + VL + D +++L+ G + G A
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNIINT-- 1291
AL D++ I T +G +G GKS+ L L R+ C G+I +DG +I +
Sbjct: 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 1292 -PVRDLRGRFAVVPQSPFLFEGSLRDN---------LDPFHMNDDLKIWSVLEKCHVKEE 1341
V LR R +V Q P F S+ +N L D + + L K + EE
Sbjct: 94 DVVE-LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE 152
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTA 1386
V + + E G S GQ+Q +C+ARA+ S +V+ +DE C+A
Sbjct: 153 V-----KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
|
Length = 267 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 2e-11
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 58/251 (23%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1278
++E +N+++R + L D++ T+ G V I+G GAGKS++L AL G
Sbjct: 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL------SGE 51
Query: 1279 -----GQILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLK 1328
G++ ++G + + +L R AV+PQ PF E + P
Sbjct: 52 LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP-------- 103
Query: 1329 IWSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALL------KSSKV 1378
+ V A V L S G++Q + LAR L +
Sbjct: 104 -HGLSRA-EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161
Query: 1379 LCLDECTANVDAQ----TASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILD 1429
L LDE T+ +D + + G+ VI + H LN+ D I++L
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHER--GLAVIVVLHD----LNLAARYADRIVLLH 215
Query: 1430 HGHLPHCGCAA 1440
G L G A
Sbjct: 216 QGRLVADGTPA 226
|
Length = 258 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 3e-11
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
S+ A+ D++F + G VGI G G G++ + ALF L P G+I +DG + R
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70
Query: 1295 DLRGR-FAVVPQSPF---LFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1349
D A VP+ L S+ +N+ L
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENI-------------AL---------------- 101
Query: 1350 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECKGMT 1408
S G +Q + LAR L + +VL LDE T VD A I + G
Sbjct: 102 -----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 1409 VITIAHRISTVLNM-DEILILDHGHL 1433
V+ I+ + +L + D IL++ G +
Sbjct: 157 VLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTP--ICGGQILVDGLNIINTPV 1293
AL +IN +I I+G +G GKS+ LN + ++ P G++ +G NI+ V
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 1294 R--DLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE----AV 1345
+LR +V Q F S+ DN+ P +I K ++E VE V
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGP-------RIHGTKNKKKLQEIVEKSLKDV 139
Query: 1346 GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
L VK+ +S S GQ+Q +C+ARAL + VL +DE T+ +D + ++ I
Sbjct: 140 ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 1402 SECKGMTVITIAH 1414
+ T++ + H
Sbjct: 200 KLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 4e-11
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 25/199 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII-NTP 1292
AL IN I ++G +G GKS++L L R+ + G ++ +DG +I N
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGLE 1348
V DLR + +V Q P F S+ +N+ L+ + +K + E VE L
Sbjct: 78 VADLRIKVGMVFQKPNPFPMSIYENV-----AYGLRAQGIKDKKVLDEVVERSLRGAALW 132
Query: 1349 TFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1404
VK+ S GQ+Q +C+AR + V+ +DE T+ +D ++ +
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 1405 KGMTVITIAH------RIS 1417
K T++ + H RIS
Sbjct: 193 KNYTIVIVTHSMQQARRIS 211
|
Length = 249 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1292
L AL ++FT+E G + +VG +G GKS++ L + GG++ G +++
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83
Query: 1293 ---VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHMNDDLKIWSVLEKCHVKEEV 1342
+ LR + +V Q+P+ GSL L +P +N L S E+ +E+
Sbjct: 84 PEAQKLLRQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTSL---SAAER---REKA 134
Query: 1343 EA----VGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
A VGL FS GQRQ I +ARAL+ V+ DE + +D
Sbjct: 135 LAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 4e-11
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 56/139 (40%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
++L +SL + G + ++G G+GKS+LL I GE+ G + ++ I Y Q
Sbjct: 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70
Query: 680 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739
LS GG++
Sbjct: 71 ----LS--------------------------------------------------GGEK 76
Query: 740 ARLALARAVYHGSDIYMLD 758
RLALA+ + ++ +LD
Sbjct: 77 MRLALAKLLLENPNLLLLD 95
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 4e-11
Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 9/218 (4%)
Query: 1222 LIEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
++E +N+ +Y K S L+ ++F+I G V I+G+ G+GKS+ + L G+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1338
+ +DG + V +LR + +V Q+P F G+ ++ F M N + ++++ V
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--V 121
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
E + AV + F S GQ+Q + +A + +++ LDE T+ +D +
Sbjct: 122 DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 1399 AISSECKG---MTVITIAHRISTVLNMDEILILDHGHL 1433
I E K +TV++I H + + D IL++ G +
Sbjct: 182 VI-HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEI 218
|
Length = 277 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 32/236 (13%)
Query: 1222 LIEFQNVTMRYKPSL-------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
L+E ++VT Y+ L +++ +IE G VG++GR+G GKS++ L L
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 1275 PICGGQILVDGLNIINTP-------VRDLRGRF-----AVVPQSPFLFEGSLRDNL-DPF 1321
G + G ++ RD++ F AV P+ ++R + +P
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM------TVRQIIGEPL 115
Query: 1322 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES-GISFSVGQRQLICLARALLKSSKVLC 1380
L + + E ++ VGL + + S GQ Q I +ARAL K++
Sbjct: 116 RHLTSLDESEQKAR--IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173
Query: 1381 LDECTANVDA--QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
LDE +N+D Q + + G + I H + V + + ++D G +
Sbjct: 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
LH ++ T G G++G G+GKS++L L R P G+IL+D + + + +
Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86
Query: 1300 FAVVPQSPFLFEG-SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1354
A +PQ EG ++R+ + P+H L + ++ V+E + VGL+
Sbjct: 87 VAYLPQQLPAAEGMTVRELVAIGRYPWH--GALGRFGAADREKVEEAISLVGLKPLAHRL 144
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMTVIT 1411
S S G+RQ +A + + S+ L LDE T+ +D A +L + +S E +G+TVI
Sbjct: 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIA 203
Query: 1412 IAHRISTVLNM 1422
+ H I NM
Sbjct: 204 VLHDI----NM 210
|
Length = 265 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 29/231 (12%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
LIE +NV++R L D+++ + G IVG GAGK+++L+ L P G +
Sbjct: 31 LIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1282 LVDGLNIINTPV-RDLRGRFAVVPQSPFLFEGSLRDN-------LDPFHMNDDLKIW--- 1330
+ G +LR R +V S L E R L F + I+
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLV--SSELHE-RFRVRETVRDVVLSGFF--ASIGIYQED 143
Query: 1331 ---SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
L +E +G + S S G+++ + +ARAL+K ++L LDE
Sbjct: 144 LTAEDLAAAQ--WLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 1388 VD----AQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHL 1433
+D Q + L+ +++ ++ + H + L+L G +
Sbjct: 202 LDLIAREQLLNRLEE-LAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEV 251
|
Length = 257 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+ + Y AL DI G + ++G +GAGKSS+L L L G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1283 VDG--LNIINTP----VRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE- 1334
+ G + TP +RDLR +V Q L+ ++++NL + ++ + +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL----IEAPCRVLGLSKD 116
Query: 1335 --KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--- 1389
++ ++ + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 1390 -AQTASILQNAISSECKGMTVITIAHRI-------STVLNMDEILILDHG 1431
AQ SI++ + G+T + + H + S V+ M+ I++ G
Sbjct: 177 TAQIVSIIKELAET---GITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 670
+ L ++L +PK + A+IG G GKS+LL S I G+++ I+
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 671 SG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMV 720
+ V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG----PRLHGIKDKK-ELDEIVEESLKK 127
Query: 721 GGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
+ ++ + LSGGQ+ RL +ARA+ ++ +LD+ SA+D I
Sbjct: 128 AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE--E 185
Query: 777 IMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
++ L+K T ++ THN+ QA +D G++
Sbjct: 186 LI--QELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1286
++++ Y+ +AL D++ TI G V ++G +G GK+++LN + G I ++G
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 1287 NIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSV---LEKCHVKEEV 1342
+ VV Q+ L ++ DN+ F L++ + + + +
Sbjct: 67 ----RRIEGPGAERGVVFQNEALLPWLNVIDNVA-F----GLQLRGIEKAQRREIAHQML 117
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
VGLE + S G RQ + +ARAL ++L LDE +DA T +Q +
Sbjct: 118 ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177
Query: 1403 ECK--GMTVITIAHRISTVLNM-DEILILDHG 1431
+ G V+ I H I L + +++L G
Sbjct: 178 LWQETGKQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 6e-11
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 40/230 (17%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1278
L+E + ++ + + +++ TI G + ++G +G GK+++L RL I G
Sbjct: 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVL----RL--IAGFET 65
Query: 1279 ---GQILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSV 1332
G+I++DG +I + P R + F QS LF ++ +N+ F L++
Sbjct: 66 PDSGRIMLDGQDITHVPAENRHVNTVF----QSYALFPHMTVFENV-AF----GLRMQKT 116
Query: 1333 LE---KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
V E + V LE F + S GQ+Q + +ARA++ KVL LDE + +D
Sbjct: 117 PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Query: 1390 AQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGH 1432
+ L+ + +E K G+T + + H L M D I+++ G
Sbjct: 177 YK----LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
|
Length = 375 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 6e-11
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 17/176 (9%)
Query: 1255 IVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIIN-TPVRDLRGRFAVVPQSPF 1308
++G TG+GK++ L L R+ + G G +L+ G +I N V + R R ++ Q P
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111
Query: 1309 LFEGSLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVG 1361
F S+ DN+ H K + + + + E VGL VK+ S S G
Sbjct: 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTE----VGLWDAVKDRLSDSPFRLSGG 167
Query: 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
Q+QL+CLAR L + +VL LDE T+ +D T ++ I S +TVI + H ++
Sbjct: 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
|
Length = 276 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 7e-11
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1295
AL I+ + G VG+ G GAGKS+++ L + P G G+I G + + +RD
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNIRD 74
Query: 1296 L-RGRFAVVPQSPFLF-EGSLRDN--------LDPFHMNDDLKIWSVLEKCH--VKE-EV 1342
R ++ Q L E S+ +N L M + + ++E ++
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY----LRAKNLLRELQL 130
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
+A + V + G GQ+QL+ +A+AL K +++L LDE ++++ + IL + I
Sbjct: 131 DADNVTRPVGDYGG----GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 1403 -ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGCAAAPN 1443
+ G+ + I+H+++ V + D I ++ G H
Sbjct: 187 LKAHGVACVYISHKLNEVKAVCDTICVIRDGQ--HVATKDMST 227
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 35/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+N ++L + KG + +IG GSGK++ + I + T G I G
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75
Query: 673 SIAYVPQ----VPWILSGTIRDNI-----LFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I YV Q P + T+ +NI L + + D ++L+
Sbjct: 76 KIGYVIQQIGLFPHM---TVEENIALVPKLLK-------WPKEKIRERADELLALVGLDP 125
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
+ LSGGQ+ R+ +ARA+ + ++D+ A+D + R L
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-ITRDQLQEEFKRLQQE 184
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L KT + TH++ A AD + +M G++ +G+ ++
Sbjct: 185 LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-11
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 53/228 (23%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N V++ ++L + +G++V ++G G GK+++L + G T G I G
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 673 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDM 724
S A P + ++ +N+ +G E + V +L +V D+
Sbjct: 79 DICMVFQSYALFPHM------SLGENVGYGLKMLGVPKEERKQR----VKEALELV--DL 126
Query: 725 AYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A ++ V+ +SGGQ+ R+ALARA+ + + D+ LS +DA + R M
Sbjct: 127 AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR----------SMR 176
Query: 784 QKTRIL----------CTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+K R L TH+ +A + +D V+VM+KG++ IGS +L
Sbjct: 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 13/216 (6%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +++ RYK AL ++ +I G++ ++G GAGKS++L L + G++
Sbjct: 5 IEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
V G + + +R + +V Q P +F ++ D++ +N L V + V+E
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR--VEE 121
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASIL 1396
++AV + F + S GQ++ + +A L V+ LDE A +D IL
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 1397 QNAISSECKGMTVITIAHRISTVLN-MDEILILDHG 1431
+ + ++ G TVI H + D++++L G
Sbjct: 182 -DRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEG 214
|
Length = 274 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 35/214 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
L VSL + +G ++G GSGKS LL +I G + G I +G
Sbjct: 12 EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71
Query: 674 -IAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I+YVPQ P + T+ NI +G + D + + +I+ M+G D
Sbjct: 72 DISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVL------EIAEMLGID-H 121
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ---VARWILSNAIMGPHM 782
+ K LSGG++ R+A+ARA+ I +LD+ SA+D + R L
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR---KE 178
Query: 783 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
T + TH+ +A + AD V +M G++ +G
Sbjct: 179 FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+F+N+ + P+ + ++F + G + I G G GKSS+ L L P+ GG++
Sbjct: 452 IKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLT 510
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+G+ VPQ P++ G+LRD + ++D+K + +K +++ +
Sbjct: 511 KPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDK-DLEQIL 558
Query: 1343 EAVGLETFVK-ESGIS--------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
+ V L ++ E G S S G++Q I +AR + LDECT+ V
Sbjct: 559 DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD-- 616
Query: 1394 SILQNAISSECK--GMTVITIAHRIS 1417
++ + C+ G+T+ +++HR S
Sbjct: 617 --VEGYMYRLCREFGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 42/236 (17%)
Query: 1217 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1276
W +Q P A+ + + G +G+VG +G GKS+ A+ L
Sbjct: 26 WFWQ------------PPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA 73
Query: 1277 CGGQILVDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN------DDL 1327
G++ G L + + R +R ++ Q P +L+P M + L
Sbjct: 74 TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA-------SLNP-RMTIGEIIAEPL 125
Query: 1328 KIW-SVLEKCHVKEEVEA----VGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+ + L + VK+ V+A VGL + FS GQ Q I +ARAL+ K++
Sbjct: 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIIC 185
Query: 1382 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGH 1432
DE + +D AQ ++LQ + E G+++I IAH ++ V ++ D +L++ GH
Sbjct: 186 DEPVSALDVSIQAQVVNLLQ-QLQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGH 239
|
Length = 331 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 25/213 (11%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L+D++ ++ G ++G G GKS++L RL G + + I R L R
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 1300 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVKESG 1355
A++PQ EG ++R+ L + + L +W L + V + +E +
Sbjct: 78 LALLPQHHLTPEGITVRE-LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL 136
Query: 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQ--NAISSECKGMTV 1409
S GQRQ LA L + + V+ LDE T +D + +++ N +G TV
Sbjct: 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-----QGKTV 191
Query: 1410 ITIAHRISTVLNM-----DEILILDHGHLPHCG 1437
+T+ H LN D +++L +GH+ G
Sbjct: 192 VTVLHD----LNQASRYCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 21/201 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+F+NV RY L + ++F ++ G G++G GAGK++ L L LT G I
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSV---LEKCHV 1338
+ G + + R R R VVPQ DNLDP F + ++L ++ L
Sbjct: 66 LCG-EPVPSRARHARQRVGVVPQF---------DNLDPDFTVRENLLVFGRYFGLSAAAA 115
Query: 1339 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ V E LE S G ++ + LARAL+ VL LDE T +D Q
Sbjct: 116 RALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 1395 ILQNAISS-ECKGMTVITIAH 1414
++ + S +G T++ H
Sbjct: 176 LMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
V+ + +S L G + + G GSGK++LL I G + G+I G P V
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 685 -----------SGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ T+ +N+ F + + + L+A L +A++
Sbjct: 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL---------APLAHL--P 124
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
LS GQ+ R+ALAR + I++LD+ +A+DA
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG--GQILVDGLNII--NT 1291
AL+ ++ ++G +G+GKS++L ++ R L P G I+ +G NI T
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGL 1347
DLR +V Q P F S+ +N+ L++ + +K + E VE +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENV-----VYGLRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 1348 ETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
VK +S + S GQ+Q +C+AR L S K++ LDE T+ +D +A ++ +
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 1404 CKGMTVITIAH------RIS 1417
T++ + RIS
Sbjct: 195 KDDYTMLLVTRSMQQASRIS 214
|
Length = 252 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673
L VS + +G VA++G GSGKS+L + G ++ G+I G
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + T++D++ FG E ++ VD +L G ++ +
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER----VDQALRQVGMEDFLNREP 138
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC- 790
LSGGQ+ R+A+A + DI +LD+ S +D + R +L + ++ I
Sbjct: 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV---RQLKEQKGITVL 195
Query: 791 --THNVQAISAADMVVVMDKGQVKWIG 815
TH++ + AD V+VM+KG++ G
Sbjct: 196 SITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L ++L + KG + +IG+ GSGKS+L + G + G + SG
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 674 -IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q P + T+ +++ FG P++ VD +L G Y
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFG----PENLCLPPIEIRKRVDRALAEIGLEKYRHRS 133
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQ +ALA + + + D+V S +D +L I H KT +
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYI 192
Query: 791 THNVQAISAADMVVVMDKGQVKWIGS 816
THN++ + AD ++VMD+G++ G
Sbjct: 193 THNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 19/212 (8%)
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
V+ RY L+ ++ I G V +VGR+G GKS++L L L G++L
Sbjct: 16 NAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG- 72
Query: 1286 LNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1344
P+ + R ++ Q L + DN+ W + + + A
Sbjct: 73 ----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQ----W----RDAALQALAA 120
Query: 1345 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-- 1402
VGL E + S GQ+Q + LARAL+ +L LDE +DA T +Q+ I S
Sbjct: 121 VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180
Query: 1403 ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ G TV+ + H +S + M D +L+++ G +
Sbjct: 181 QQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 52/225 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-------GSIHASGSIA 675
+ + V++ + K + A+IG G GK++LL SI M H G I+ G
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI--NRMNDHIPGFRVEGKIYFKGQDI 72
Query: 676 YVP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL 712
Y P Q P +I DN+ FG K+ + E+LK L
Sbjct: 73 YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL 132
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI 772
++ + + + G LSGGQ+ RL +ARA+ ++ +LD+ SA+D + I
Sbjct: 133 WDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI 185
Query: 773 LSNAIMGPHMLQK-----TRILCTHNV-QAISAADMVVVMDKGQV 811
+L++ T ++ THN+ QAI AD + M +G++
Sbjct: 186 EK-------LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 53/211 (25%), Positives = 106/211 (50%), Gaps = 22/211 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1278
L+E +N+T + + A L +++ + G V + G GAGKS+++ L + P G
Sbjct: 5 LLEMKNITKTF-GGVKA-LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYE 61
Query: 1279 GQILVDGLNIINTPVRD--------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330
G+I+ +G + + +RD + A+V + L L + + P + D ++
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 1331 SVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+K + +++ + T V G+ GQ+QL+ +A+AL K +++L LDE TA++
Sbjct: 122 LRAQK--LLAQLKLDINPATPVGNLGL----GQQQLVEIAKALNKQARLLILDEPTASLT 175
Query: 1390 AQTASILQNAISS-ECKGMTVITIAHRISTV 1419
++L + I + G+ I I+H+++ V
Sbjct: 176 ESETAVLLDIIRDLKAHGIACIYISHKLNEV 206
|
Length = 506 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 29/218 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVR 1294
+ D+N +++ G + +VG +G+GKS A+ L P G+IL+DG + P+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLS 58
Query: 1295 DLRGR-FAVVPQSPFLFEGSLRDNLDPF-----HMNDDLKIWSVLEK---CHVKEEVEAV 1345
+RGR A + Q+P R +P H + L+ L K + E +EAV
Sbjct: 59 -IRGRHIATIMQNP-------RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV 110
Query: 1346 GL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1401
GL E +K+ S G Q + +A ALL L DE T ++D A +L+
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1402 -SECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ G ++ I H + V + DE+ ++D G + G
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERG 208
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 2e-10
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII--NTP 1292
L +IN I+G +G GKS++L AL R+ I G +L+D NI N
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1352
V +LR R +V Q P F S+ DN+ S L++ V++ + L VK
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV-VEKSLRQAALWDEVK 138
Query: 1353 E----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1408
+ SG++ S GQ+Q +C+AR L +V+ +DE + +D + ++ + + T
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYT 198
Query: 1409 VITIAHRI 1416
+ + H +
Sbjct: 199 IAIVTHNM 206
|
Length = 251 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTP--I 1276
L+ Q+V + Y A+ ++N ++ GT ++G +G GK++ L A+ R LTP
Sbjct: 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR 61
Query: 1277 CGGQILVDGLNIINTPVRD--LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1333
G+IL+DG +I V +R R +V Q P F S+ DN+ LK+ +
Sbjct: 62 VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA-----GLKLAGIR 116
Query: 1334 EKCHVKEEVE----AVGLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECT 1385
++ H+ E E L VK+ S GQ+Q +C+ARAL ++L +DE T
Sbjct: 117 DRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176
Query: 1386 ANVDAQTASILQNAISSECKGMTVITIAHRI 1416
+ +D + + +++ ++ K T+I + H +
Sbjct: 177 SALDPASTARIEDLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------IAYVPQ---V 680
L KG L+ ++G G+GK++LL +ILG + G++ +G+ I YVPQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQR 739
W ++ ++ G+ A V +L G + + ++ V LSGGQR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-LTELADRPVGELSGGQR 119
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRILCTHN-VQA 796
R+ +ARA+ + +LD+ + +D + L + G ++ TH+ QA
Sbjct: 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT---AILMTTHDLAQA 176
Query: 797 ISAADMVVVMDKGQVKWIGSSADL 820
++ D VV+++ G+V G+ L
Sbjct: 177 MATCDRVVLLN-GRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 35/214 (16%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR- 1297
AL+D++ ++ G I+G GAGK+++++ + T G +L G ++ P +
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 1298 ---GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEAV 1345
GR F Q P +FE ++ +NL+ + D +++ L EK ++E +E +
Sbjct: 77 AGIGRKF----QKPTVFENLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETI 131
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DA---QTASILQNAIS 1401
GL S GQ+Q + + L++ K+L LDE A + D +TA +L++ ++
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-LA 190
Query: 1402 SECKGMTVITIAH------RIS---TVLNMDEIL 1426
+ +V+ + H I+ TVL+ +L
Sbjct: 191 GKH---SVVVVEHDMEFVRSIADKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 10/213 (4%)
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1292
K L + D + IE G I+G +G+GKS+++ L RL GQ+L+DG++I
Sbjct: 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS 96
Query: 1293 VRDL----RGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL 1347
+L R + A+V QS L ++ DN F M + I + + + + VGL
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDN-TAFGM-ELAGINAEERREKALDALRQVGL 154
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA-ISSECKG 1406
E + S G RQ + LARAL + +L +DE + +D + +Q+ + + K
Sbjct: 155 ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 1407 M-TVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
T++ I+H + + + D I I+ +G + G
Sbjct: 215 QRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVG 247
|
Length = 400 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 33/212 (15%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L++I+F++ G I G +G GKS++L + L G +L +G +I R +
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 1300 FAVVPQSPFLFEGSLRDNL-----------DPFHMNDDLKIWSVLEKCHVKEEVEAVGL- 1347
+ Q+P LF ++ DNL DP DDL E L
Sbjct: 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDL---------------ERFALP 127
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECK 1405
+T + ++ S G++Q I L R L KVL LDE T+ +D + I +
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ 187
Query: 1406 GMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
+ V+ + H + + D+++ L PH G
Sbjct: 188 NIAVLWVTHDKDEINHADKVITLQ----PHAG 215
|
Length = 225 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 16/216 (7%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPICGG 1279
+E +NVT Y ++ IN TI+ G + ++G G+GKS+ +L L++ P G
Sbjct: 323 LELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQ-SG 378
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
+IL+DG + D R F+ V LF+ L P + + LE+ +
Sbjct: 379 EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP---ANPALVEKWLERLKMA 435
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
++E S + S GQ++ + L AL + +L LDE A+ D
Sbjct: 436 HKLELEDGRI----SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491
Query: 1400 ISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433
+ + G T+ I+H ++ D +L + +G L
Sbjct: 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQL 527
|
Length = 547 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 33/160 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 679
L ++L L G L+ V+G G GK++LLN I G + HGSI G P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 680 ------VPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+PW ++DN+ FG K + + LK L+ G + Y
Sbjct: 76 FQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-------GAEKRY 125
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
I + LSGGQR R+ +ARA+ + +LD+ A+DA
Sbjct: 126 IWQ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-10
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+VL VS + V ++G GSGKS+LL + + + + G I +G
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 673 -SIAYVPQVPWILSGTIRDNILFGKNYDP---QSYSETLKACTLDVDISLMV----GGDM 724
+ +PQ P + GT+R N+ DP S +E A L V + V G
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNV------DPFLEASSAEVWAALEL-VGLRERVASESEGID 1436
Query: 725 AYIGEKGVNLSGGQRARLALARAVY-HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ + E G N S GQR + +ARA+ GS ++D+ + +D + R I +M
Sbjct: 1437 SRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSA-FS 1494
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 830
T I H + ++ D ++VMD G V +GS +L ++ S F S
Sbjct: 1495 AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHS 1541
|
Length = 1560 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294
S + D++FT+ G +GI G GAG++ + ALF P G+IL+DG + R
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPR 329
Query: 1295 D-LRGRFAVVP---QSPFLFEG-SLRDNLDPFHMN----DDLKIWSVL----EKCHVKEE 1341
D ++ A VP +S L S+ +N + ++ E+ +
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAEN-----ITLASLRRFSRRGLIDRRKERALAERY 384
Query: 1342 VEAVGLETFVKESGI-----SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASI 1395
+ + +K + S G +Q + LAR L KVL LDE T +D A I
Sbjct: 385 IRRLR----IKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI 440
Query: 1396 LQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ I G ++ I+ + +L + D IL++ G +
Sbjct: 441 YR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 43/226 (19%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY + L +++ +PK + A+IG G GKS+LL I G+++
Sbjct: 15 WY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL 69
Query: 663 LTHGSIHASGS--------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
+I SG+ I V Q P +I +N+ +G P+ + E K TLD
Sbjct: 70 YNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG----PRIHGEKNKK-TLDT 124
Query: 715 DISLMVGGDMAY------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
+ + G + + + ++LSGGQ+ RL +AR + ++ ++D+ SA+D +
Sbjct: 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-I 183
Query: 769 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
A + + I L+K T I+ THN+ QA +D M G++
Sbjct: 184 ATAKIEDLIE---DLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD--- 1295
A+ D + I G +G +G GKS++L +L R+ + G ++ + V
Sbjct: 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82
Query: 1296 ----LRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEAV 1345
+R +V Q P F S+ DN L+ + + ++ L+ + +EV+
Sbjct: 83 DPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK 142
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
+K SG+S S GQ+Q +C+ARA+ +VL LDE + +D ++ + K
Sbjct: 143 -----LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 1406 GMTVITIAHRI 1416
T+ + H +
Sbjct: 198 DYTIALVTHNM 208
|
Length = 261 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-10
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+ V+ Y + ++D++FTI G G++G GAGKS+I L + G+I
Sbjct: 5 IDLVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1341
V G + + R R VVPQ DNLDP F + ++L ++ +E
Sbjct: 63 VLG-EPVPSRARLARVAIGVVPQF---------DNLDPEFTVRENLLVFGRYFGMSTREI 112
Query: 1342 VEAVG-------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
+ LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 113 EAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 172
Query: 1395 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHG 1431
++ + S +G T++ H + + D + +L+ G
Sbjct: 173 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1292
K ++D++ + G I+G +G+GKS++L + RL G++L+DG +I
Sbjct: 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 1293 VRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE------- 1341
++LR + ++V QS L P H + LE V
Sbjct: 93 RKELRELRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPRAEREERAA 142
Query: 1342 --VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN- 1398
+E VGLE + + S G +Q + LARAL +L +DE + +D +Q+
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202
Query: 1399 --AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ +E T++ I H + L + D I I+ G L G
Sbjct: 203 LLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-10
Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 21/206 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+ ++++ +Y S L I+FT+ G ++G GAGKS+++ + + P G +
Sbjct: 11 LLCARSISKQY--SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1282 LVDGLNIIN-TPVRDLRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEK- 1335
+ G TP + + +VPQ P LF S+++N+ P K+ +L
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 1336 -CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTA 1393
C + + A LE V RQ++ + R L++ S++L LDE TA++ A+T
Sbjct: 129 GCQLDLDSSAGSLE-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 1394 SILQNAISSECKGMTVITIAHRISTV 1419
+ +G+ ++ I+H++ +
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEI 203
|
Length = 510 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 25/229 (10%)
Query: 1222 LIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
L+E +N+ T RY+ L A+ ++FT+ G + I+G G+GKS++ L +
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 1275 PICGGQILVDG--LNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLK 1328
G+IL++ L+ + R R R + P L G + D P +N DL+
Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD--FPLRLNTDLE 121
Query: 1329 IWSVLEKCHVKEEVEAVGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
++ + E + VGL + GQ+Q + LARAL+ K++ DE
Sbjct: 122 PEQRRKQ--IFETLRMVGLLPDHANYYPH--MLAPGQKQRVALARALILRPKIIIADEAL 177
Query: 1386 ANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
A++D S L N + E +G++ I + I + ++ D++L++ G
Sbjct: 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEG 226
|
Length = 267 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-10
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQVPW 682
+L++++ + G + + GE G+GK+SLL ++ G G I A ++ ++PQ P+
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY 466
Query: 683 ILSGTIRDNILF---GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----L 734
+ GT+R+ + + ++ L L + + L
Sbjct: 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL----------DEEDRWDRVL 516
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
SGG++ RLA AR + H LD+ SA+D +
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
|
Length = 604 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 43/208 (20%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------------IAYVP 678
+ + G G+GKS+LL I G G+I +G+ I V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 679 Q----VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
Q P + +R+N+ FG D S E L + + ++ Y +
Sbjct: 82 QQYALFPHL---NVRENLAFGLKRKRNREDRISVDELLDL----LGLDHLLN---RYPAQ 131
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRI 788
LSGG++ R+ALARA+ ++ +LD+ SA+D + R L + L I
Sbjct: 132 ----LSGGEKQRVALARALAAQPELLLLDEPFSALDRAL-RLQLLPELKQIKKNLNIPVI 186
Query: 789 LCTHN-VQAISAADMVVVMDKGQVKWIG 815
TH+ +A AD +VVM+ G++++IG
Sbjct: 187 FVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 41/223 (18%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------ASGS------- 673
L V++ +P GS VA+IG GSGKS+LL + G + T G++ +G
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 674 ----IAYVPQVP--WILSGTIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMA 725
+ V Q P + T+ +I FG P ++ SE A ++ +VG
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFG----PMNFGVSEE-DAKQKAREMIELVGLPEE 137
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--- 782
+ LSGGQ R+A+A + ++ +LD+ + +D + R +M M
Sbjct: 138 LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GR----KEMME--MFYK 190
Query: 783 LQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L K T +L TH+++ A AD +VVM KG V G+ ++
Sbjct: 191 LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+N L + KG + ++G GSGKS+ + + + T G I G
Sbjct: 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66
Query: 673 -----SIAYVPQ-VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q TI N G + Q E V + +
Sbjct: 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG---LEEYE 123
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 782
Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + + +
Sbjct: 124 HRYPDE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDP-LIRDSMQDELKKLQAT 178
Query: 783 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
LQKT + TH++ +AI D +V+M G++ +G+ ++
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 4e-10
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 17/209 (8%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1278
Q I+ +N+ + Y AL +++ I + ++G +G GKS+ + L R+ +
Sbjct: 10 QPQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 1279 ----GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI 1329
G++ ++G +I V +LR +V Q P F S+ DN+ H + +
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 1330 WSVLEKCHVKEEVEAVGLETF--VKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
V+E A+ ET +K +S S GQ+Q +C+AR L K++ DE T+
Sbjct: 128 DGVVENAL---RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184
Query: 1388 VDAQTASILQNAISSECKGMTVITIAHRI 1416
+D + + +++ I + K T++ + H +
Sbjct: 185 LDPISTARIEDLIMNLKKDYTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 1228 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----IC-GGQI 1281
+ + ++ L D NFT+ + G +G+GK+S++N + LT I G++
Sbjct: 2 LELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV 61
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
LVD I P + R V Q LF ++R NL +W + +
Sbjct: 62 LVDAEKGIFLPPE--KRRIGYVFQDARLFPHYTVRGNL-------RYGMWKS-MRAQFDQ 111
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQ-- 1397
V +G+E + + S G++Q + + RALL + ++L +DE A++D IL
Sbjct: 112 LVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 1398 NAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
+ E + ++ ++H + VL + D +++L++G
Sbjct: 172 ERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 45/230 (19%)
Query: 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
L++ N+ RY+ LH+++F+I G + IVG +G+GKS++L+ L L G
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
Query: 1280 QILVDG--LNIINTPVR-DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1334
++ +G ++ +++ + +LR + + F+++ FH L ++ LE
Sbjct: 65 DVIFNGQPMSKLSSAAKAELRNQ-----KLGFIYQ---------FH--HLLPDFTALENV 108
Query: 1335 --------------KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380
E + AVGLE S G+RQ + +ARAL+ + +++
Sbjct: 109 AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168
Query: 1381 LDECTANVDAQTA----SILQNAISSECKGMTVIT----IAHRISTVLNM 1422
DE T N+DA+ A +L + V+T +A R+S L M
Sbjct: 169 ADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM 218
|
Length = 233 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-10
Identities = 97/418 (23%), Positives = 161/418 (38%), Gaps = 86/418 (20%)
Query: 446 TEKMMKQKDERIRRTGEILTHI-------RTLKMYGWEQIFSSWLMKTRSSEVK----HL 494
T + +KQ + R I +H+ T++ +G + F + K + +L
Sbjct: 1048 TSQQLKQLESEAR--SPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105
Query: 495 STRKYLDAWC----VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 550
ST ++ VFF F TF A+ +Q V L L +++S
Sbjct: 1106 STLRWFQMRIDIIFVFF-------FIAVTF--IAIGTNQDGEGEVGIILTLAMNILS--- 1153
Query: 551 SFPWVINGLIDA---FISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 607
+ W +N ID S+ R+ +F+ +L Q PS G S + +
Sbjct: 1154 TLQWAVNSSIDVDGLMRSVSRVFKFI-------DLPQEEPRPS--GGGGKYQLSTVLVIE 1204
Query: 608 MQDATCSWYCNNE-----------EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 656
A W + E VL +S + G V ++G GSGKS+LL++
Sbjct: 1205 NPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264
Query: 657 ILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDP--Q 701
+L ++ T G I G + +PQ +I SGT R KN DP Q
Sbjct: 1265 LL-RLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR------KNLDPYEQ 1317
Query: 702 SYSETLKACTLDVDISLMVG---GDMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYML 757
E + +V + ++ + ++ G LS G + + LAR++ + I +L
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 758 DD---VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
D+ L V Q+ R L + T IL H V+A+ +V++ VK
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFS-----NCTVILSEHRVEALLECQQFLVIEGSSVK 1430
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L +N TI+ G + ++G +G GKS++LN + L G ++++G I P D R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ-ITEPGPD---R 56
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE-VEAVGLETFVKESGISF 1358
V L ++R+N+ ++ L S E+ + EE + VGL +
Sbjct: 57 MVVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRI 1416
S G +Q + +ARAL KVL LDE +DA T LQ + + +TV+ + H +
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175
Query: 1417 STVLNM-DEILILDHGHLPHCG 1437
L + D +++L +G + G
Sbjct: 176 DEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 52/229 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L+ VSL L G ++A++G G+GKS+LL ++ GE+ G + +G
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 673 SIAYVPQ-VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
A +PQ T+++ + G +P+ D+S
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-------GL 128
Query: 727 IGEKGVNLSGGQRARLALAR------AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
G LSGG++ R+ LAR LD+ SA+D +++
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD-------IAHQH--- 178
Query: 781 HMLQKTRILCT---------HNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
H L+ R L H++ + AD +V++ +G+V GS D
Sbjct: 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 45/224 (20%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+N VSL + +G +V ++G G+GK++ I+G + G I A
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 672 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I Y+PQ I T+ +NIL G + + E L+ + I+
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EKLEELLEEFHIT-------H 125
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAIMG 779
K +LSGG+R R+ +ARA+ +LD+ + VD + I L + +G
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 780 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
+L T HNV + +S D ++ +G+V G+ ++A
Sbjct: 186 --------VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 7e-10
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 9/198 (4%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RDLRGR 1299
D++ T+ G VG++G GAGK++ + + P G I++D +I P+ R RG
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG- 79
Query: 1300 FAVVPQSPFLFEG-SLRDNLDP-FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
+PQ +F S+ DNL + DDL + + E +E +E G S
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLS--AEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRI 1416
S G+R+ + +ARAL + K + LDE A VD + ++ I G+ V+ H +
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 1417 STVLNMDE-ILILDHGHL 1433
L + E I+ GHL
Sbjct: 198 RETLAVCERAYIVSQGHL 215
|
Length = 241 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-10
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 660
S D+ + +++ C + +E + V LN +S K + +IG GSGKS+L+ G
Sbjct: 17 SDDIILRVKNLYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 661 MMLTHGSIHASG-----------------------------SIAYVPQVP--WILSGTIR 689
+ +G+I ++ V Q P + TI
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 690 DNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749
+I+FG SE K ++ +G D +Y+ LSGGQ+ R+A+A +
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLN---KMGLDDSYLERSPFGLSGGQKRRVAIAGILA 192
Query: 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDK 808
+I + D+ + +D + ++ I+ KT + TH + + AD V+VMDK
Sbjct: 193 IQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
Query: 809 GQV 811
G++
Sbjct: 252 GKI 254
|
Length = 320 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
L ++L + G VA+IG G+GKS+LL I + + GSI G
Sbjct: 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK 73
Query: 673 ------SIAYVPQ-VPWILSGTIRDNILFGK-NYDP------QSYSETLKACTLD----V 714
I + Q I T+ +N+L G+ Y P +SE K L V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
++ D AY + LSGGQ+ R+A+ARA+ D+ + D+ ++++D + ++ ++
Sbjct: 134 GLA-----DKAYQ--RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD 186
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T I+ H V A AD +V + G++ + G+ ++L
Sbjct: 187 YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 8e-10
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
Y N + L + L + KGS A+IG GSGKS+LL + G + T G +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 673 --------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSY------SETLKAC 710
+ V Q P + T+ ++ FG PQ++ +E + A
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG----PQNFGIPKEKAEKIAAE 126
Query: 711 TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
L+ MVG + + LSGGQ R+A+A + ++ +LD+ + +D + AR
Sbjct: 127 KLE-----MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK-AR 180
Query: 771 WILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+ H +T +L TH + ++ AD V +++KG + G+ +D+
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL D++F + G ++G++GR GAGKS++L L + P G + V G +
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RV---------- 85
Query: 1299 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1350
S L F L R+N+ ++N L S E +E+ L F
Sbjct: 86 -------SSLLGLGGGFNPELTGRENI---YLNGRLLGLSRKEIDEKIDEIIEFSELGDF 135
Query: 1351 ----VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1405
VK +S G + + A A +L +DE A DA Q + K
Sbjct: 136 IDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 1406 GMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
G TVI ++H S++ + D L+L+ G + G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 32/183 (17%)
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302
++FT+ G + + G G GK+++L L L G++ +G T + + R
Sbjct: 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG-----TALAEQRDE--- 70
Query: 1303 VPQSPFLFEG---------SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1350
P L+ G S +NL H I L AVGL F
Sbjct: 71 -PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDAL---------AAVGLTGF 120
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1408
S GQ++ + LAR L + + LDE T +D ++L + + G+
Sbjct: 121 EDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 1409 VIT 1411
++T
Sbjct: 181 LLT 183
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+++ V + P GSL ++G GSGKS+LL + G + G++ +G
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 674 -IAYVPQ-VPWILSGTIRDNILFGK-------NYDPQSYSETLKACTLDVDISLMVGGDM 724
+A V Q + T+RD + G+ D + + ++S + DM
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAIMGPHM 782
+ LSGG+R R+ +ARA+ + +LD+ + +D AQ+ L +
Sbjct: 136 S-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-- 186
Query: 783 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T + H++ A S D VVV+D G+V G ++
Sbjct: 187 -GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 9e-10
Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1296
+ +I+FT+ G +G+VG +G+GKS+ AL RL G+I DG + N R L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLP 359
Query: 1297 -RGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKI-WSVLEKCHVKEEV----EAVGLET 1349
R R VV Q P SL L+ + + L++ L +++V E VGL+
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 1350 FVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQ 1397
+ + FS GQRQ I +ARAL+ ++ LDE T+++D AQ ++L+
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469
|
Length = 529 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
L+ V++ + G V +IG GSGKS+L+ + G + T G I G
Sbjct: 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
+ V Q P + TI +I FG S E ++ +VG D
Sbjct: 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLDYEDY 137
Query: 728 GEKG-VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK- 785
+K LSGGQ+ R+A+A V I +LD+ + +D + IL N I H
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNM 196
Query: 786 TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
T IL +H+++ ++ AD ++VM+KG+ + G+ +
Sbjct: 197 TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ VSL L G + ++G G+GK++L+ + + G+I G
Sbjct: 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRR 72
Query: 674 -IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT---LDVDISLMVGG-DMAYIG 728
I Y+PQ + N + Y LK + + ++ ++
Sbjct: 73 RIGYLPQEF-----GVYPNF---TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA 124
Query: 729 EKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQ--VARWILSNAIMGPHMLQ 784
+K + LSGG R R+ +A+A+ I ++D+ + +D + R +LS L
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE-------LG 177
Query: 785 KTR--ILCTHNVQAISA-ADMVVVMDKGQVKWIG 815
+ R IL TH V+ + + + V V++KG++ + G
Sbjct: 178 EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 60/234 (25%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 674
+Y + L ++L +PK + A+IG G GKS+LL L M G +
Sbjct: 16 YYGDKH-----ALKDINLDIPKNKVTALIGPSGCGKSTLLRC-LNRMNDLIPGARVEGEV 69
Query: 675 AY---------------------VPQVPWILSGTIRDNILFG------KNYDPQSYSET- 706
V Q P +I DN+ +G K+ + E+
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESS 129
Query: 707 LKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764
LK L +V L + + LSGGQ+ RL +ARA+ ++ ++D+ SA+
Sbjct: 130 LKKAALWDEVKDRL---------HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 765 D----AQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 811
D ++ I L+K T ++ THN+ QA +D G++
Sbjct: 181 DPISTLKIEELITE--------LKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
|
Length = 253 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-LTHGSIHASG--------- 672
VVL+ VSL +PKG + ++IG G+GKS+LL S++ ++ G I G
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 673 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVD--ISLMVGGDMA 725
++ + Q I S T+RD + FG+ P S K ++ I + D++
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFGRF--PYSQGRLTKEDRRIINEAIEYLHLEDLS 129
Query: 726 --YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y+ E LSGGQR R +A + +D +LD+ L+ +D + + I+ L
Sbjct: 130 DRYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 784 QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
KT ++ H++ S +D +V + G+V GS ++
Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
+N VSL + G +V +IG G+GK++L N I G + G++ G
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 674 ---IAYVPQVPWILSG-TIRDNILFGK-NYDPQSYSETLKACTLDVDISL--------MV 720
IA Q+ + G T+ +N+ G S + + V
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 721 G-GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G G++A NLS GQ+ RL +ARA+ + +LD+ + ++ + + I
Sbjct: 138 GLGELAD--RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRE 194
Query: 780 -PHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 811
T +L H+++ + AD +VV++ G+V
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--Q 679
Q+ V + VSL + KG + A++G G GKS+LL + G T G I G +++VP Q
Sbjct: 32 QHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90
Query: 680 VPWIL---------SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
P + T+ NI FG D +E V+ L + + K
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI----ASRVNEMLGLVHMQEFAKRK 146
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQR R+ALAR++ + +LD+ + A+D ++ + + + T ++
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 791 THNV-QAISAADMVVVMDKGQVKWIGS 816
TH+ +A++ A + +M++G+ IG
Sbjct: 207 THDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+++ ++ Y PA L DIN T+E G + ++G +G GK+++LN + P G I
Sbjct: 1 MLQISHLYADY-GGKPA-LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL--RDNLDPFHMNDDLKIWSVLEKCHVK 1339
+DG PV VV Q+ EG L R+ D L +++ +
Sbjct: 59 TLDG-----KPVEGPGAERGVVFQN----EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA 109
Query: 1340 EEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
++ VGLE K S GQRQ + +ARAL + ++L LDE +DA T +Q
Sbjct: 110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
Query: 1399 AISS--ECKGMTVITIAHRISTVLNMDEILIL 1428
+ + G V+ I H I + M L+L
Sbjct: 170 LLLKLWQETGKQVLLITHDIEEAVFMATELVL 201
|
Length = 255 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1296
L DIN I G V + G +G+GK+++L + L + G + V G + ++L
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 1297 RGRFAVVPQSPFLFEGSL--RDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE 1353
R + Q+ L G L R N+ + +L E+ +EAVGL +
Sbjct: 81 RRNIGYIFQAHNLL-GFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDY 137
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
+ S GQ+Q + +ARAL+ K++ DE TA +D+++ + + + G T++
Sbjct: 138 YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197
Query: 1412 IAH--RISTVLNM-DEILILDHGHL 1433
+ H RI L++ D I+ ++ G L
Sbjct: 198 VTHDNRI---LDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 13/200 (6%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN-ALFRLTP--IC 1277
G++ +NV++R S L ++NFTI G V ++G +G GKS++L+ + L C
Sbjct: 1 GMLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58
Query: 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1336
G++ ++ + P + + ++ Q LF S+ NL F + LK +
Sbjct: 59 TGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNL-LFALPATLK--GNARRN 113
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
+E GL+ + + S GQR + L RALL K L LDE + +D
Sbjct: 114 AANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173
Query: 1397 QNAISSECK--GMTVITIAH 1414
+ + SE + G+ + + H
Sbjct: 174 RQWVFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 22/230 (9%)
Query: 1219 FQGLIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1275
F I NV+ Y P AL++ + T + ++G TG+GKS+++ L
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 1276 ICGGQILVD------GLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNL--DPFHMND 1325
GQ +V L I V+ LR +V Q P LF+ ++ ++ P ++ +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKE-VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 1326 DLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
+ + +K V E ++ V L E +VK S S GQ++ + LA + L LDE
Sbjct: 122 NKQ--EAYKK--VPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 1385 TANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHG 1431
T +D + N K +I + H + VL + DE++++ G
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 1220 QGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
+ F + + P AL DI+F G ++G GAGKS++L L
Sbjct: 2 SPYLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57
Query: 1278 GGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLK-IWSVLE 1334
G IL+DG + L A++ Q L E ++ +NL + + L
Sbjct: 58 AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL 117
Query: 1335 KCHVKEEVEAVGL----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+E++E +G+ +T +K S+GQRQ++ +A+AL ++++V+ DE T+++ A
Sbjct: 118 NYEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1391 QTASILQNAISS-ECKGMTVITIAHRISTVLNMDEI 1425
+ L I +G ++ ++HR M+EI
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHR------MEEI 203
|
Length = 501 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 30/189 (15%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297
A ++FT+ G + + G G+GK+++L L L+P G++L++G P+ R
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG-----GPLDFQR 68
Query: 1298 GRFAVVPQSPFLFEG---------SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGL 1347
A L+ G S+ +NL +H + D ++ L + VGL
Sbjct: 69 DSIA----RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALAR---------VGL 115
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-- 1405
F S GQ++ + LAR LL + LDE T +D + A++ C
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 1406 GMTVITIAH 1414
GM V+T
Sbjct: 176 GMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
Q I +VT+ ++ AL D +FT+ GG+ +VG G+GKS++ AL + G
Sbjct: 4 QAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG 62
Query: 1280 QILVDGLNIINTPVRD-LRGRF-AVVPQS-------PFLFEGSLRDNLDPF-HMNDDLKI 1329
+I +I+ P R L+ A VPQS P L E + + + HM
Sbjct: 63 KI-----SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM--MGRYGHMG----- 110
Query: 1330 WSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
W K ++ V A V + F S GQ++ + LARA+ + +V+ LDE
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 1386 ANVDAQT-ASI--LQNAISSECKGMTVITIAHRISTV 1419
VD +T A I L + E K M V T H + +V
Sbjct: 171 TGVDVKTEARIISLLRELRDEGKTMLVST--HNLGSV 205
|
Length = 272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 35/201 (17%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1280
++EF+NV+ Y L D++F I+ G ++ IVG GAGKS++L L L P+ G
Sbjct: 321 VLEFENVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+ + + I Q RD LDP D + + E +
Sbjct: 380 KVGETVKI------------GYFDQH--------RDELDP----DKTVLEELSEGFPDGD 415
Query: 1341 EVEAVG-LETF------VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
E E L F ++ S G++ + LA+ LL+ +L LDE T ++D ++
Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 1394 SILQNAISSECKGMTVITIAH 1414
L+ A+ + +G TV+ ++H
Sbjct: 476 EALEEAL-LDFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 52/235 (22%)
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-- 657
SK++ + +Q+ T S Y E +NV + +P+G + A+IG G GKS++L S+
Sbjct: 8 ISKNIIISLQNVTIS-YGTFEAVKNVFCD-----IPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 658 ---LGEMMLTHGSIHASGSIAYVPQV---------------PWILSGTIRDNILFGK--- 696
L E G + G+ Y P+V P +I +NI FG
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN 121
Query: 697 ----NYDPQSYSETLKACTLD--VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750
+ D KA D D + E G +LSGGQ+ RL +AR +
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKD----------KLNESGYSLSGGQQQRLCIARTIAI 171
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADM 802
++ ++D+ SA+D ++ + + H L+K T ++ THN+ QA+ +DM
Sbjct: 172 EPEVILMDEPCSALDP-ISTLKIEETM---HELKKNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----------------HA 670
LN VSL +P G + VIG G+GKS+L+ + T GS+ A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 671 SGSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
I + Q +LS T+ N+ D E + T ++ +VG +G+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT---ELLALVG-----LGD 132
Query: 730 KG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
K NLSGGQ+ R+A+ARA+ + + D+ SA+D + IL L
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 786 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
T +L TH + + D V V+ G++ G+ +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-09
Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 47/220 (21%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRD 1295
A+ ++F + G + +VG +G+GKS+ AL RL GG+I+ +G I ++
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 1296 LRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWSVLE----KCHVKEEVEAVG 1346
LR + Q P+ +LDP + + L++ +L V +E VG
Sbjct: 399 LRRDIQFIFQDPYA-------SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451
Query: 1347 LET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQ 1397
L + E FS GQRQ IC+ARAL + KV+ DE + +D Q ++L
Sbjct: 452 LLPEHAWRYPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLL 507
Query: 1398 NA----------ISSECKGMTVIT-IAHRISTVLNMDEIL 1426
+ IS + M V+ I+HR++ V+ + +I+
Sbjct: 508 DLQRDFGIAYLFISHD---MAVVERISHRVA-VMYLGQIV 543
|
Length = 623 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1291
A+ +N I I+G +G GKS+ L A+ R L P C G ++ DG +I T
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH-MNDDLKIWSVLEKCHVK----EEVE 1343
LR + +V Q P F S+ DN+ H +ND ++ ++EK K +EV
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1403
+ ++ + S GQ+Q +C+AR L ++L LDE T+ +D + + +++ I E
Sbjct: 174 -----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLI-QE 227
Query: 1404 CKGMTVITI 1412
+G I I
Sbjct: 228 LRGSYTIMI 236
|
Length = 286 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1291
AL +IN I I+G +G GKS+ + L R L P G+IL NI +
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAV---- 1345
V +LR +V Q P F S+ DN+ P KI + +K + E VE
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGP-------KIHGIKDKKTLDEIVEKSLRGA 151
Query: 1346 ----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
L+ + ++ S GQ+Q +C+AR L V+ +DE T+ +D + ++ +
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 1402 SECKGMTVITIAH 1414
K ++I + H
Sbjct: 212 ELKKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 620 EEEQNV-VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
E+E +V LN VS + KG V++IG+ GSGKS+ I G G + G
Sbjct: 15 EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE 74
Query: 674 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I V Q P + T+ D++ FG E +K VD +L+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR----VDEALLAVNM 130
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMG 779
+ + + LSGGQ+ R+A+A + +I +LD+ S +D ++ R I + I
Sbjct: 131 LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI--HEIKE 188
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
+ L T + TH++ +++D ++VM G++
Sbjct: 189 KYQL--TVLSITHDLDEAASSDRILVMKAGEI 218
|
Length = 277 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 45/221 (20%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 672
VS L +G +A+IGE GSGKS+L + G + T G I +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 673 -----SIAYVP--QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG--GD 723
+ + P ++ IL +R N + +P+ + + TL MVG D
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLN----TDLEPEQRRKQIFE-TLR-----MVGLLPD 141
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
A L+ GQ+ R+ALARA+ I + D+ L+++D + R L N ++ +
Sbjct: 142 HANYYPH--MLAPGQKQRVALARALILRPKIIIADEALASLDMSM-RSQLINLML--ELQ 196
Query: 784 QKTRILCTHNVQAISA----ADMVVVMDKGQVKWIGSSADL 820
+K I + Q I +D V+VM +G+V GS+AD+
Sbjct: 197 EKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL ++L + G +V + G GSGK++LL I G + GS+ G
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+I Y+ Q +L T R N+ P + + + ++ +G + Y
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 785
NLSGGQ+ R+A+ARA+ H + + D+ +A+D++ R ++ ++QK
Sbjct: 140 H---NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE-------LMQKLAR 189
Query: 786 ----TRILCTHNVQAISAADMVVVMDKGQVK 812
T ++ TH+ + + AD +V M+ G++
Sbjct: 190 EQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 54/227 (23%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTP---- 1292
AL DI G + ++G +GAGKSS+L L L G + + G + TP
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-----CHV----KEEVE 1343
+R+LR +V Q + NL P H+ +V + C V K++
Sbjct: 77 IRELRRNVGMVFQ---------QYNLWP-HL-------TVQQNLIEAPCRVLGLSKDQAL 119
Query: 1344 A--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1391
A + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D AQ
Sbjct: 120 ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 1392 TASILQNAISSECKGMTVITIAHRI-------STVLNMDEILILDHG 1431
SI++ + G+T + + H + S V+ M+ I++ G
Sbjct: 180 IVSIIRELAET---GITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1291
A+ D+N IE + +G +G GKS++L L R+ + G++L+DG ++
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 1292 -PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AV 1345
PV +R +V Q P F S+RDN+ LK+ V K + E VE
Sbjct: 79 DPV-AVRRTIGMVFQRPNPFPTMSIRDNVVA-----GLKLNGVRNKKDLDELVEKSLRGA 132
Query: 1346 GLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDE-CTA 1386
L VK+ G S GQ+Q +C+ARA+ VL +DE C+A
Sbjct: 133 NLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
|
Length = 258 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 40/243 (16%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG--- 1278
IE +N+ ++ LH I+ ++ G V I+G +G+GK+++L + L P G
Sbjct: 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 1279 -GQILVDG---LNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNL--DPFHMNDDLKIWS 1331
G I +D L+ +R LR V Q+ LF ++ +N+ P
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP----------- 110
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGIS---------FSVGQRQLICLARALLKSSKVLCLD 1382
V+ K KEE A E K G++ S GQ+Q + +ARAL +V+ D
Sbjct: 111 VIVKGEPKEEATARARELLAK-VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169
Query: 1383 ECTANVDAQTASILQNAISS---ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGC 1438
E T+ +D + + N I E + M ++T H +S ++ D + +D G + G
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVIVT--HEMSFARDVADRAIFMDQGRIVEQGP 227
Query: 1439 AAA 1441
A A
Sbjct: 228 AKA 230
|
Length = 250 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 27/214 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
++ V+ + +G + +G G+GK++ + + + T G+ +G
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 673 SIAYVPQ---VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
SI VPQ V L+G R+N+ + G+ Y + + L+ ++
Sbjct: 67 SIGIVPQYASVDEDLTG--RENLEMMGRLYG---LPKDEAEERAE---ELLELFELGEAA 118
Query: 729 EKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
++ V SGG R RL +A ++ H D+ LD+ + +D + R + + I T
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR-AIWDYIRALKEEGVTI 177
Query: 788 ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+L TH + +A D + ++D G++ G+ +L
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 43/203 (21%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
++ VS + +G + ++GE G GKS+L ILG T G I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGVNLSGGQRARLAL 744
+ GK+ S E + L++ + + + Y E LSGGQR R+ +
Sbjct: 71 -----LFEGKDITKLSKEERRER-VLELLEKVGLPEEFLYRYPHE----LSGGQRQRIGI 120
Query: 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR----ILCTHN---VQAI 797
ARA+ + + D+ +SA+D V IL N + LQ+ + +H+ V+ I
Sbjct: 121 ARALALNPKLIVADEPVSALDVSVQAQIL-NLLKD---LQEELGLTYLFISHDLSVVRYI 176
Query: 798 SAADMVVVMDKGQVKWIGSSADL 820
S D + VM G++ IG + ++
Sbjct: 177 S--DRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ-VP 681
+L VSL L G + ++G G+GKS+LL + GE+ G + + Y+ Q P
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76
Query: 682 WILSGTIRDNIL--FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV------- 732
T+ D ++ FG+ + + E A D D L+ + G
Sbjct: 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136
Query: 733 ----------------NLSGGQRARLALARAVYHGSDIYMLD 758
+LSGG R R+ALARA+ D+ +LD
Sbjct: 137 EALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
|
Length = 530 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 21/201 (10%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L +SL +P+GS A++G G+GKS+LL + G + G + G
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + S T+ D++ FG P + V+ +L + +
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFG----PVNMGLDKDEVERRVEEALKAVRMWDFRDKPP 136
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+LS GQ+ R+A+A + D+ +LD+ ++ +D + ++ + H KT I+ T
Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVAT 195
Query: 792 HNVQ-AISAADMVVVMDKGQV 811
H+V A AD V+V+ +G+V
Sbjct: 196 HDVDLAAEWADQVIVLKEGRV 216
|
Length = 274 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
+LN +S L G + G G GKS+LL + + T G++ G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 674 ---IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
++Y Q P + T+ DN++F + DP + + L+ L I
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL-------- 131
Query: 726 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
K + LSGG++ R++L R + + +LD++ SA+D ++ I Q
Sbjct: 132 ---TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH-NVNEIIHRYVREQ 187
Query: 785 KTRIL-CTHNVQAISAADMVVVM 806
+L TH+ I+ AD V+ +
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-LGEM----MLTHGSIHASGSIAYVP 678
VL+ + L + G +VA+IG GSGK++LL I L E + G I + +
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 679 Q----------VPWILSG-------TIRDNILFG----KNYDPQSYSETLKACTLDVDIS 717
Q V ++ T+ +NI+ G K + + + V ++
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
G + +Y LSGGQ+ R+A+ARA+ ++ + D+ SA+D ++ +L N I
Sbjct: 136 ---GKETSYPRR----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL-NTI 187
Query: 778 MGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 811
++T ++ TH + A AD + MD+G++
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
Length = 250 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 24/217 (11%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1291
A+ D++ + I+G +G GKS++L ++ R+ + G+IL+D +I +
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 1292 -PVRDLRGRFAVVPQSPFLFEG-SLRDN-LDPFHMNDDLK-------IWSVLEKCHVKEE 1341
PV +R R +V Q P F S+ DN + + +N + + S L++ + +E
Sbjct: 79 DPV-SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
V+ +K + + S GQ+Q +C+AR + +V+ +DE + +D + ++ I
Sbjct: 138 VK-----DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 1402 SECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ T+I + H + + D G L CG
Sbjct: 193 ELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 20/206 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPIC- 1277
++ +N+ + Y L A+ ++ I +G +G GKS+IL N L L P
Sbjct: 10 VLRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 1278 -GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1328
G++ G N+ V ++R R +V Q P F S+ DN+ + + + D
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 1329 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ L + + +EV+ +K+SG+S S GQ+Q +C+ARA+ +V+ +DE + +
Sbjct: 128 VERSLRQAALWDEVKDK-----LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
Query: 1389 DAQTASILQNAISSECKGMTVITIAH 1414
D + ++ + + T+I + H
Sbjct: 183 DPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301
D++FT+ G + I G GAGK+++L L L G++ G I N
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES------- 72
Query: 1302 VVPQSPFLFEG---SLRDNLDPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETFVKES 1354
L+ G ++ L ++L W + E + VGL
Sbjct: 73 --YHQALLYLGHQPGIKTELTAL---ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
S GQ++ + LAR L + + LDE +D + ++L +++ G+ ++T
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 40/221 (18%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPICGGQILVDGLNIINTPVRDL 1296
L+D++ +E G + I+G +G+GK+++L+A+ GQIL +G +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK- 81
Query: 1297 RGRFAVVPQSPFLFEG-SLRDNLD-------PFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1348
A V Q L G ++R+ L P +D ++ K+ VE V L
Sbjct: 82 --CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----------KKRVEDVLLR 129
Query: 1349 ---------TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
VK GI S G+R+ + +A LL KVL LDE T+ +D+ TA L +
Sbjct: 130 DLALTRIGGNLVK--GI--SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 1400 ISSECK-GMTVITIAHRI-STVLNM-DEILILDHGHLPHCG 1437
+S + VI H+ S + + D IL+L G + + G
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
P + E + V + Y L AL D++ I + +G +G GKS++L R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1278 GGQILVDGLNIINTPVRD-------LRGRFAVVPQSPFLFEGSLRDNL------DPFHMN 1324
G + L + + D LR + +V Q P F S+ +N+ + + N
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1325 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
D + L + + EEV+ +KE G + S GQ+Q +C+ARA+ VL +DE
Sbjct: 134 LDELVEDSLRRAAIWEEVKDK-----LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAHRI 1416
+ +D + ++ + T+I + H +
Sbjct: 189 CSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-09
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 55/231 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
L+ VSL + G + A++GE G+GKS+L+ + G G I G
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGK---------NYDPQSYSETLKACT---LDV 714
IA V Q VP + ++ +NI G+ + + LD+
Sbjct: 82 AAGIATVHQELSLVPNL---SVAENIFLGREPTRRFGLIDRK-AMRRRARELLARLGLDI 137
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
D +VG +LS QR + +ARA+ + + +LD+ +A+ + L
Sbjct: 138 DPDTLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE-RLF 185
Query: 775 NAIMGPHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
+ I L+ I +H + + AD + V+ G + +G+ A
Sbjct: 186 DLI---RRLKAQGVAIIYISHRLDEVFEIADRITVLRDG--RVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 5e-09
Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 13/224 (5%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1278
G I ++ + Y + L D++ IE G + ++G++G GK+++L A+ G
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1337
G+I + ++ + P RG A++ Q+ LF + DN+ F + K+
Sbjct: 62 GRIAIADRDLTHAPPHK-RG-LALLFQNYALFPHLKVEDNV-AFGLRAQ-KMPKADIAER 117
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASIL 1396
V + ++ VGL S G +Q I +ARA+ VL LDE + +DA A++
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177
Query: 1397 QN--AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ A+ E +T++ + H L + D+ I+ G L G
Sbjct: 178 EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+N VSL + G +V ++G G+GK++ I+G + G I A
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78
Query: 672 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I Y+PQ I T+ DNI+ K+ E L A + I+
Sbjct: 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-------H 131
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI--LSNAIMG 779
K +LSGG+R R+ +ARA+ +LD+ + VD + R I L + +G
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 780 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 821
+L T HNV + + D ++ G+V GS ++
Sbjct: 192 --------VLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-09
Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 20/208 (9%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRGR 1299
D++F++ G +G+ G GAG++ ++ ALF P G + ++G + I P + +R
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 1300 FAVVPQS-------PFLFEGS--LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1350
A+VP+ P L G L F ++I + E + ++ + ++T
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK--MRIDAAAELQIIGSAIQRLKVKTA 395
Query: 1351 VKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAISSECKG 1406
I S G +Q LA+ LL + +VL LDE T VD I L N ++ E G
Sbjct: 396 SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--G 453
Query: 1407 MTVITIAHRISTVLNM-DEILILDHGHL 1433
+ +I ++ ++ VL + D +L++ G L
Sbjct: 454 VAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILV--DGLNIINT 1291
AL +IN + ++G +G GKS+ L R+ + G+I++ D +NI++
Sbjct: 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90
Query: 1292 PVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1349
V ++R R ++V Q P F S+ +N+ +K S+LE+ V+ + L
Sbjct: 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAALWD 149
Query: 1350 FVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
VK+ + S GQ+Q +C+ARAL ++L DE T+ +D + ++ IS
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN 209
Query: 1406 GMTVITIAHRI 1416
+T++ + H +
Sbjct: 210 KVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 26/206 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L+ +S L +GS VA++G GSGKS+L+ + + G+I +G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
++ V Q P + T+ ++ FG KN+ +SE +A + VG
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED-EAKEKALKWLKKVGLSEDL 138
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
I + LSGGQ R+A+A + + +I LD+ + +D + R + T
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE-GRKEMMQLFKDYQKAGHT 197
Query: 787 RILCTHNVQAISA-ADMVVVMDKGQV 811
IL THN+ ++ AD V+V++ G++
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
AL DI+F I G +VGI+G GAGKS++L + + G++ V G +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG---------KV-- 90
Query: 1299 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGLETF 1350
+P + F+ L R+N+ ++ + + E +E+ L F
Sbjct: 91 -------APLIELGAGFDPELTGRENI---YLRGLILGLTRKEIDEKVDEIIEFAELGDF 140
Query: 1351 VKESGISFSVGQRQLICLARALLKSSK--VLCLDECTANVDAQ----TASILQNAISSEC 1404
+ + ++S G LA ++ + +L LDE A DA L +
Sbjct: 141 IDQPVKTYSSGMY--ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE--- 195
Query: 1405 KGMTVITIAHRISTVLNM-DEILILDHGHL 1433
K T++ ++H + + D + L+HG +
Sbjct: 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQI 225
|
Length = 249 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-09
Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 28/218 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DG---LNIINTPV- 1293
+H+ + IE G ++G +G+GKS++L A+ L P+ G +LV DG +++ N
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAA 98
Query: 1294 --RDLR-GRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLE---KCHVKEEVE 1343
R LR R ++V Q P+ ++ +N+ F L++ + + + V E++E
Sbjct: 99 TLRRLRTHRVSMVFQQFALLPWR---TVEENV-AF----GLEMQGMPKAERRKRVDEQLE 150
Query: 1344 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AI 1400
VGL + S G +Q + LARA + +L +DE + +D + LQ+ +
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 1401 SSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
S+ K T++ ++H + L + + I I++ G + G
Sbjct: 211 QSKLK-KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHG 247
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 47/200 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG----------S 673
+L VS G L A++G G+GKS+LLN++ G G + +G
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
I YVPQ D+IL TL V +LM + +G
Sbjct: 84 IGYVPQ----------DDILHP---------------TLTVRETLMFAAKL-----RG-- 111
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGG+R R+++A + + LD+ S +D+ A ++S + +T I H
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSIHQ 170
Query: 794 VQA--ISAADMVVVMDKGQV 811
+ D ++++ +G+V
Sbjct: 171 PSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 39/218 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
VL+ ++ + G VA+IG GSGKS++L ++ + G I G Y
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 677 VPQVPWILSGTIRDNI--LFGKNYDPQSYSETLKACTLD--VDISLMVGG---------- 722
VP L +R+ I +F QS++ LD + ++V G
Sbjct: 75 VPADEKHLR-QMRNKIGMVF------QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRA 127
Query: 723 ----DMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
DM + +K LSGGQ+ R+A+ARA+ + + D+V SA+D ++ +L+
Sbjct: 128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 775 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 811
T +L TH + A AD V DKG++
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASG 672
+EEQNV + V+ ++ E GSG+ S + G+++L I
Sbjct: 1244 GDEEQNVGMKNVNE-------FSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRN 1296
Query: 673 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ V Q P + + +I +NI FGK + + K +D I + +G G
Sbjct: 1297 LFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYG 1356
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
+LSGGQ+ R+A+ARA+ I +LD+ S++D+ + I + KT I
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 792 HNVQAISAADMVVVMD 807
H + +I +D +VV +
Sbjct: 1417 HRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------------LGEMMLTHGSIHAS 671
V+L+ ++L + KG + A+IGE GSGKS+LLN I G+ S AS
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 672 ----GSIAYVPQ-VPWILSGTIRDNILFGKNYDPQSYSETLKA---CTLDVDISLMVGGD 723
+ Y+ Q I + T+ +N+ G Y S E + V ++L
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL----- 126
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ +K LSGG++ R+ALARA+ + + D+ ++D + + ++ +L
Sbjct: 127 --KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVL-DLLL 178
Query: 784 Q-----KTRILCTHNVQAISAADMVV 804
+ KT I+ TH+ + AD V+
Sbjct: 179 ELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH-------------ASG 672
VL+ V L + +GSLV ++G G+GK++LL +I G + T G++ AS
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 673 SIAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+A VPQ + +R + G+ + + V+ ++ G +
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV 137
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSNAIMGPHMLQ 784
+LSGG+R R+ LARA+ + + +LD+ +++D ++ R ++ +
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG-------- 189
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
KT + H++ A D +V++ G+V+ G AD+
Sbjct: 190 KTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 24/233 (10%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M +I C Y ++E LN ++ P+ S +AVIG G+GKS+L G +
Sbjct: 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP 56
Query: 664 THGSIHASGS-------------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLK 708
T GS+ G + V Q P I S T+ +I FG P + +
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG----PINLGLDEE 112
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V +L + G +LSGG++ R+A+A + + +LD+ + +D Q
Sbjct: 113 TVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172
Query: 769 ARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
+ ++ P T I TH + + AD + VMDKG++ G+ ++
Sbjct: 173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 616 YCNNEE-EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-- 672
Y +NEE + + L+ V+L + KG + ++G GSGKS++ + ++ + G ++ G
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 673 ------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
V Q P I++ + +++ FG P++ + VD SL
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG----PENLGIPPEEIRERVDESL 129
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
G Y LSGGQ+ R+A+A + + + D+ + +D R ++ N I
Sbjct: 130 KKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIK 188
Query: 779 GPHMLQK----TRILCTHNVQAISAADMVVVMDKGQVKWIGS 816
L K T IL TH ++ AD ++VMD G+V G+
Sbjct: 189 E---LNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 45/232 (19%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG----------EMMLTHGSIHAS 671
Q+ L+ V L + G +VA++G GSGKS+LL + G + L ++
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 672 GSIA-----------YV-PQVPWILSGTIRDNILFG------------KNYDPQSYSETL 707
G +A Y+ Q + ++ +N+L G + + L
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 708 KACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
+A T VG M + + V+ LSGGQ+ R+A+ARA+ + + + D+ ++++D
Sbjct: 135 QALT-------RVG--MVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDP 185
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSS 817
+ AR ++ T ++ H V A+ + +V + +G V + GSS
Sbjct: 186 ESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
Length = 262 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 43/227 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
Q V +N VSL + +G + ++G GSGKS+LL I + T G + G
Sbjct: 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKE 95
Query: 673 --------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
S A +P T+ +N+ FG +E + ++
Sbjct: 96 LRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERAAEALE--- 146
Query: 719 MVG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+VG Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + +
Sbjct: 147 LVGLEGWEHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI-RREMQD 201
Query: 776 AIMGPH-MLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ LQKT + TH++ +A+ D + +M G++ +G+ ++
Sbjct: 202 ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 50/218 (22%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT------------PICGGQILVDGL 1286
AL ++ I + ++G +G GKS+ L L R+ + G I DG+
Sbjct: 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119
Query: 1287 NIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---------------------DPFHMND 1325
N++ +LR R +V QSP F S+R+N+ D D
Sbjct: 120 NLV-----ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174
Query: 1326 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
+L + L + + +EV + ++ + S GQ+Q +C+AR L +V+ +DE
Sbjct: 175 EL-VERSLRQAALWDEV-----NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 1386 ANVDAQTASILQNAISSECKGMTVITIAH------RIS 1417
+ +D S +++ I + TV+ + H RIS
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS 266
|
Length = 305 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 45/214 (21%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVPW- 682
L VS +PKG V + G G+GKS+LL I GE T G I +G ++ + ++P+
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 683 -------------ILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ T+ +N+ GK P+ + LD +VG
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP--PREIRRRVSE-VLD-----LVG--- 126
Query: 725 AYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ I+
Sbjct: 127 --LKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEI 183
Query: 781 HMLQKTRILCTHNVQAISAADM---VVVMDKGQV 811
+ L T ++ TH+++ + M V+ ++ G++
Sbjct: 184 NRLGTTVLMATHDLELV--NRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 673
L VS +PKG +++G GSGKS++ ++G + G I +
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 674 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSET---LKACTLDVDISLMVGGDMAYIG 728
I V Q P + ++ ++ FG Y E + VD+ +
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM-------LERAD 137
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 787
+ LSGGQ+ R+A+A + + +LD+ S +D AR L + + ++
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-ARQNLLDLV---RKVKSEHN 193
Query: 788 ---ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
I TH++ AD V+VM+KG V G+ ++
Sbjct: 194 ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 2e-08
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 72/213 (33%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ Y L L DI+ TI G ++G+VGR GAGKS+ L +L I G
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKST----LLKL--IAGELEP 52
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342
+G + Q
Sbjct: 53 DEG-----IVTWGSTVKIGYFEQ------------------------------------- 70
Query: 1343 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402
S G++ + LA+ LL++ +L LDE T ++D ++ L+ A+
Sbjct: 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
Query: 1403 ECKGMTVITIAH-R--ISTVLNMDEILILDHGH 1432
G TVI ++H R + V +I+ L+ G
Sbjct: 116 Y-PG-TVILVSHDRYFLDQVAT--KIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 56/221 (25%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+LN +SL LP G + A+IG G GKS+LL + G++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN-----------YDPQSYSETLKACTLDVDISLMV 720
+A +PQ G T+R+ + +G++ D ++ ++ ++
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN------- 129
Query: 721 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--QVARWILSNAI 777
+A ++ + +LSGGQR R LA + + + +LD+ + +D QV +
Sbjct: 130 --HLA---DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV-------EL 177
Query: 778 MGPHMLQ------KTRILCTHNV-QAISAADMVVVMDKGQV 811
M +++ KT + H++ QA D +VV+ G V
Sbjct: 178 MR--LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216
|
Length = 255 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
+ ++ T G+ G++G G+GKS++L L G + + G+++ R R
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76
Query: 1300 FAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETF 1350
A+V Q S ++RD + P +W+ + H V + L
Sbjct: 77 VALVEQDSDTAVPLTVRDVVALGRIPH-----RSLWA-GDSPHDAAVVDRALARTELSHL 130
Query: 1351 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQTASILQNAISSE--CKG 1406
+ S G+RQ + +ARAL + K+L LDE T ++D AQ ++ A+ E G
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL---ALVRELAATG 187
Query: 1407 MTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+TV+ H ++ + D +++LD G + G
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 42/232 (18%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+ +NV++ + L D++ ++ G + ++G GAGKS+++ + L G I
Sbjct: 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQS-------PFLFEGSLRDNLDPFHMNDDLKIWSVLE 1334
R+ + R VPQ P LR L P +D I L+
Sbjct: 62 -----------KRNGKLRIGYVPQKLYLDTTLPLTVNRFLR--LRPGTKKED--ILPALK 106
Query: 1335 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQT 1392
+ ++A K SG G+ Q + LARALL ++L LDE T VD Q
Sbjct: 107 RVQAGHLIDA----PMQKLSG-----GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 1393 ASI-LQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442
A L + + E V+ ++H + V+ DE+L L+H H C+ P
Sbjct: 158 ALYDLIDQLRREL-DCAVLMVSHDLHLVMAKTDEVLCLNH----HICCSGTP 204
|
Length = 251 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL+ +SL + KG + +G G+GK++ + ILG + G I G
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74
Query: 686 GTIRDNILFGKNYDPQSYSETLKA-CTL------DVDISLMVGGDMAYIGEKGVNLSGGQ 738
G + + F Y + E L+ L +D L V G +K S G
Sbjct: 75 GALIEAPGF---YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGM 131
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARW----ILSNAIMGPHMLQKTRILCTHNV 794
+ RL +A A+ D+ +LD+ + +D + ILS G +L + +L +
Sbjct: 132 KQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL--SEI 189
Query: 795 QAISAADMVVVMDKGQVKW 813
Q + AD + +++KG++
Sbjct: 190 QKV--ADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
+Y +EQ L+ VS+ +P+ + A+IG G GKS+ L I L + G +
Sbjct: 48 FY---GDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT 102
Query: 670 ASGSIAY---------------VPQVPWILSGTIRDNILFG-------KNYDPQSYSETL 707
G Y V Q P +I DN+ +G + D + E+L
Sbjct: 103 FRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID-ERVEESL 161
Query: 708 KACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ L +V L G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D
Sbjct: 162 RRAALWDEVKDQL---------DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 766 AQVARWILSNAIMGPHMLQKTRILCTHNVQ 795
I ++ + T ++ THN+Q
Sbjct: 213 PVATSKI--EDLIEELAEEYTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----C 1277
IE N+ + Y + + ++ I ++G +G GKS++L RL +
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1278 GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEG-SLRDN----------LDPFHMN 1324
G++ + G NI + V ++R +V Q P F ++ DN +
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1325 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
D+ W+ L+K + +EV+ + + + S GQRQ + +ARAL K+L +DE
Sbjct: 123 DERVEWA-LKKAALWDEVK-----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAH 1414
TAN+D + ++ + K T++ + H
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 38/171 (22%)
Query: 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQIL 1282
+ ++ MR+ + T+E G +V I+G +GAGKS++LN A F LTP G +
Sbjct: 11 YHHLPMRF-----------DLTVERGERVAILGPSGAGKSTLLNLIAGF-LTP-ASGSLT 57
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----------MNDDLKIWSV 1332
++G + TP + P S LF+ +NL H +N LK+ +
Sbjct: 58 LNGQDHTTTPP-------SRRPVS-MLFQ---ENNLFS-HLTVAQNIGLGLNPGLKL-NA 104
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383
++ + +G+E + S GQRQ + LAR L++ +L LDE
Sbjct: 105 AQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155
|
Length = 232 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRD 1295
A++D+NF++ G +GIVG +G+GKS AL L GG +G I+N P ++
Sbjct: 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90
Query: 1296 L-RGR---FAVVPQSPFLFEGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEE--------V 1342
L + R +++ Q P +L+P+ + + L +L K K E +
Sbjct: 91 LNKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRML 143
Query: 1343 EAVGLETFVKESGI---SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASI 1395
+AV + K + FS G RQ + +A ALL K+L DE T +D AQ ++
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNM-DEILIL 1428
L N + E +I I H + V + D++L++
Sbjct: 204 L-NELKREF-NTAIIMITHDLGVVAGICDKVLVM 235
|
Length = 330 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 19/223 (8%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I F++V+ Y AL + F + G + G +GAGKS++L + + G+I
Sbjct: 1 MIRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1282 LVDGLNII---NTPVRDLRGRFAVVPQSP-FLFEGSLRDNLD-PFHM----NDDLKIWSV 1332
G +I N V LR + ++ Q L + ++ DN+ P + DD++
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR--- 116
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQ 1391
V ++ VGL K I S G++Q + +ARA++ VL DE T N+D A
Sbjct: 117 ----RVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 1392 TASILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHGHL 1433
+ IL+ G+TV+ H I + +L L GHL
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 20/176 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ Q V Y + I+ + G + +VG +G GKS++L + L I G+I
Sbjct: 4 LKLQAVRKSYDGKTQV-IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 1283 VDGLNIINT--PV-RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
+ G ++N P RD+ A+V Q+ L+ S+R+N M LKI + K +
Sbjct: 63 IGG-RVVNELEPADRDI----AMVFQNYALYPHMSVREN-----MAYGLKIRGM-PKAEI 111
Query: 1339 KEEVEAV----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+E V LE + S GQRQ + + RA+++ V DE +N+DA
Sbjct: 112 EERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1278
I+ ++++ Y S A+ I+ I I+G +G GKS+ + L R++ + G
Sbjct: 8 IKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1279 -GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
G + G NI + + LR + +V Q P F S+ +N+ ++I + L +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENV-----AYGVRISAKLPQ 120
Query: 1336 CHVKEEVEAV----GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ E VE+ L VK+ S + S GQ+Q +C+ARAL KVL +DE +
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 1388 VDAQTASILQNAISSECKGMTVITIAHRI 1416
+D ++ I S +T+ + H +
Sbjct: 181 LDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 49/203 (24%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG-- 672
L +S+ + + S+VA IG G GKS+ L N ++ GE+ + +I+ G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 718
++ V Q P +I +N+ +G + Q ETLK L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILS 774
+ E LSGGQ+ RL +ARA+ + ++D+ SA+D A+V I
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI-- 189
Query: 775 NAIMGPHMLQK--TRILCTHNVQ 795
H L+K T ++ THN+Q
Sbjct: 190 ------HELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 35/273 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL----GEMMLTHGSIHAS-------- 671
LN SL K + VIG GSGKS+++ N ++ G+ ++ +I A+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 672 ---GSIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
I V Q P + TI +I FG ++ E K + +V Y
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLK---LVQLPEDY 143
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQ+ R+ALA + + +LD+ +D + + N + K
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKK 202
Query: 787 R-ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQE 844
R I+ THN+ Q + AD V+VM +G+V IGS ++ +S E T + + +
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI--------FSNQELLTKIEIDPPK 254
Query: 845 M-RTNASSANKQILLQEKDVVSVSDDAQEIIEV 876
+ + NK I L K++ ++ + A+E+ +V
Sbjct: 255 LYQLMYKLKNKGIDLLNKNIRTIEEFAKELAKV 287
|
Length = 289 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHAS 671
+ + V L +PK + A IG G GKS++L N ++ G++ +++A
Sbjct: 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82
Query: 672 G--------SIAYVPQVPWILSGTIRDNILFGK-------NYDPQSYSETLKACTL--DV 714
I V Q P +I DNI +G + D + +L+ L +V
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMD-ELVERSLRQAALWDEV 141
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
L + G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D I
Sbjct: 142 KDKLK---------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI-- 190
Query: 775 NAIMGPHMLQKTRILCTHNV-QAISAADM 802
+M Q T I+ THN+ QA +DM
Sbjct: 191 EELMHELKEQYTIIIVTHNMQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 32/203 (15%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M + ++ +C E + + + +S L G + + G G+GK++LL + G +
Sbjct: 1 MMLEAENLSC------ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP 54
Query: 664 THGSIHASGS-IAYVPQVP-----WI--LSG-----TIRDNILFGKNYDPQSYSETLKAC 710
G ++ G I V + ++ G T +N+ F + + + T+
Sbjct: 55 DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEA 114
Query: 711 TLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-V 768
V +A + + V LS GQ+ R+ALAR + +++LD+ +A+D + V
Sbjct: 115 LAQVG--------LAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
Query: 769 ARWILSNAIMGPHMLQKTRILCT 791
A A+M H Q +L T
Sbjct: 167 ALL---TALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLRG 1298
++D++FT+ G +G+ G GAG++ ++ L+ P G + +DG + +P L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 1299 RFAVVPQSP----FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-------L 1347
+ + + S+++N+ + + L+ +E +AV +
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKH---ADEQQAVSDFIRLFNI 384
Query: 1348 ETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSE 1403
+T E I S G +Q + +AR L+ KVL LDE T VD I Q N +E
Sbjct: 385 KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444
Query: 1404 CKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
G+++I ++ + VL M D IL++ G +
Sbjct: 445 --GLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 39/226 (17%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
++ ++ V+ +G A++G+ GSGKS+L+ +I + T G++
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 673 -------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGG 722
I V Q P + T+ I+FG KN+ + +K + + L
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDEVKNYAHRLLMDLGFSR 136
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
D+ + + +SGGQ ++A+ + DI +LD+ + +D Q R ++ +
Sbjct: 137 DV--MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-------L 187
Query: 783 LQ-------KTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
L+ KT IL +H++ ++ AD V+VM +G + S +L
Sbjct: 188 LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-08
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRG 1298
D++F++ G +GI G GAG++ ++ LF P G+I +DG + I P + +
Sbjct: 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMN----------DDLKIWSVL----EKCHVKEEVEA 1344
A+VP E RD + P M D S + E + E ++
Sbjct: 339 GIAMVP------EDRKRDGIVPV-MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQR 391
Query: 1345 VGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAI 1400
+ ++T E I S G +Q LA+ LL + K+L LDE T +D I L N +
Sbjct: 392 LKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451
Query: 1401 SSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ G+ +I I+ + VL + D +L++ G L
Sbjct: 452 VQQ--GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 6e-08
Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 16/266 (6%)
Query: 1184 TETEKEMVSLERVLEYMDVPQE----ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1239
T E+ + E + E M+ P+ ++ P G+ +N+ ++PS A
Sbjct: 888 TREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGL-VPGVC-VKNLVKIFEPSGRPA 945
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
+ +N T +G GAGK++ L+ L L P G +LV G + I T + +R
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD-IETNLDAVRQS 1004
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE--VEAVGLETFVKESGIS 1357
+ PQ LF F+ + W E+ ++ E +E GL E
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S G ++ + +A A + +KV+ LDE T+ VD + + + + G T+I H +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121
Query: 1418 TV-LNMDEILILDHGHLPHCGCAAAP 1442
L D I I+ G L C+ P
Sbjct: 1122 EADLLGDRIAIISQGRLY---CSGTP 1144
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 20/206 (9%)
Query: 1222 LIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
L+E +++ Y PS L I+ I G V IVG +G+GKS+++N L L
Sbjct: 4 LLELKDIRRSY-PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 1279 GQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1333
G V G ++ L R F F+F+ L +L + +++ L
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFG------FIFQRYHLLSHLTAAQNVEVPAVYAGL 116
Query: 1334 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
E+ + +GLE V+ S GQ+Q + +ARAL+ +V+ DE T +D
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 1390 AQTASILQNAISSEC-KGMTVITIAH 1414
+ + + + +G TVI + H
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTH 202
|
Length = 648 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 22/207 (10%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301
DIN I G V VG +G GKS++L + L I G + + + + P + RG
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-RG-VG 78
Query: 1302 VVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG----LETFVKE 1353
+V QS P L S+ +N M+ LK+ +K + + V V L +
Sbjct: 79 MVFQSYALYPHL---SVAEN-----MSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDR 129
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
+ S GQRQ + + R L+ V LDE +N+DA ++ IS K G T+I
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189
Query: 1412 IAHRISTVLNM-DEILILDHGHLPHCG 1437
+ H + + D+I++LD G + G
Sbjct: 190 VTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E + VT + A+ +I+F + G G++G GAGK++ + L G+I
Sbjct: 3 LEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1339
+G ++ +++ R +P+ E L + D LK + L K ++
Sbjct: 61 WNGGP-LSQEIKN---RIGYLPE-----ERGLYPKMTVE---DQLKYLAELKGMPKAEIQ 108
Query: 1340 EEVEAVGLE----TFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
++++A LE K I S G +Q I A++ ++L LDE + +D
Sbjct: 109 KKLQAW-LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE 167
Query: 1395 ILQNAI-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+L++AI + +G T+I +HR+ V + D +L+L G G
Sbjct: 168 LLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG---EMMLTHGSIHASG---------- 672
+LN VSL + G ++A++G GSGK++LL++I G T G I +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 673 SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+AYV Q +L G T+R+ + + + + L D++L G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769
G +SGG+R R+++A + + +LD+ S +D+ A
Sbjct: 142 KG-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 17/203 (8%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP-----Q 679
L + +G VA++G G+GKS+LLN I G + GS+ H + + P Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 680 VPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
+ S T+ NI G +P + L I+ +G + + LSGGQ
Sbjct: 79 ENNLFSHLTVAQNIGLG--LNPGLKLNAAQREKLH-AIARQMGIE-DLLARLPGQLSGGQ 134
Query: 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ-AI 797
R R+ALAR + I +LD+ SA+D + + +L+ Q T ++ +H+++ A
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194
Query: 798 SAADMVVVMDKGQVKWIGSSADL 820
A +V+ G++ W G + +L
Sbjct: 195 RIAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 48/209 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 676
+ + + K + A+IG GSGKS+ L S L M T +G I Y
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRS-LNRMNDTIDIARVTGQILYRGIDINRKEI 94
Query: 677 -----------VPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 715
V Q P + +I +NI F K + +LK L V
Sbjct: 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK 154
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
L + + LSGGQ+ RL +ARA+ DI ++D+ SA+D ++ L
Sbjct: 155 DDL---------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-ISTMQLEE 204
Query: 776 AIMGPHMLQK--TRILCTHNV-QAISAAD 801
+ L+K T I+ THN+ QA A+D
Sbjct: 205 TMF---ELKKNYTIIIVTHNMQQAARASD 230
|
Length = 267 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 9e-08
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 49/220 (22%)
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------- 672
+ LP + A+ G GSGK+SL+N I G G I +G
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 673 -SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I YV Q P T+R N+ +G ++ D ++L+ G +
Sbjct: 76 RRIGYVFQDARLFPHY---TVRGNLRYGMWKSMRAQ--------FDQLVALL--GIEHLL 122
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSGG++ R+A+ RA+ ++ ++D+ L+++D R IL L++ R
Sbjct: 123 DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-------YLERLR 175
Query: 788 -------ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819
+ +H++ + AD VVV++ G+VK G +
Sbjct: 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 9e-08
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 619 NEEEQNVV-LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGS- 673
+ V+ ++ SL + +G + ++G GSGKS+LL ++ G ++ GS+ GS
Sbjct: 31 LDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSV 90
Query: 674 -----------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTL 712
++ V Q +PW T+ +N+ FG +E K
Sbjct: 91 DVANCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKR--- 144
Query: 713 DVDISL-MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
VD L +VG GE LSGG + R+ LARA + I ++D+ SA+D
Sbjct: 145 -VDEQLELVGLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L+ VSL + KG + + G G+GK++LL + G + + G + +G
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 673 --SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 724
I V Q +L T+ +N+ GK + + A L VG
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGK--KEREIQRRVGA-ALR-----QVG--- 126
Query: 725 AYIGEKGVN----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ IL + +
Sbjct: 127 --LEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL-DLLKRL 183
Query: 781 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQ 810
+ T I+ TH++ + A V+++D G+
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 45/206 (21%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--LGEMMLT---HGSIHASGSIAY 676
+ +L V+L +PK S+ A+IG G GKS+ + ++ + +++ G I+ G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 677 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL- 712
P Q P +I DN+ +G +++ + E+LKA L
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 713 -DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
+V L D + +G LSGGQ+ RL +AR + ++ ++D+ SA+D ++
Sbjct: 134 DEVKDKL----DKSALG-----LSGGQQQRLCIARTIAVSPEVILMDEPCSALDP-ISTT 183
Query: 772 ILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + I H L++ T ++ THN+Q
Sbjct: 184 KIEDLI---HKLKEDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M++ + T + QN L++VS KG +V +G G+GKS+ + I G +
Sbjct: 1 MSIRVSSLTKLY-----GTQNA-LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP 54
Query: 664 THGSIHASG------------SIAYVPQ-VPWILSGTIRDNILF-GKNY--DPQSYSETL 707
GS+ G +I Y+P+ P L +R+ + F Y Q + +
Sbjct: 55 DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV 114
Query: 708 KACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+ +++ + IG+ LS G R R+ LA+A+ H + +LD+ + +D
Sbjct: 115 EEM---IELVGLRPEQHKKIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLD-- 165
Query: 768 VARWILSNAIMGPHML------QKTRILCTHNVQAISA-ADMVVVMDKGQV 811
N ++ + KT IL TH +Q + A D V++++KG++
Sbjct: 166 ------PNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 25/219 (11%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1300
+I+ + G +G+ G GAG++ + L+ L P GG+I+++G I L
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 1301 AVVP---QSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1356
+P QS L+ + L N+ N W +K E LE + + I
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHN-RRGFW-------IKPARENAVLERYRRALNI 392
Query: 1357 SF----------SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECK 1405
F S G +Q + +A+ L S ++L +DE T VD + I Q S +
Sbjct: 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452
Query: 1406 GMTVITIAHRISTVLNM-DEILILDHGHLPHCGCAAAPN 1443
+ V+ I+ + + M D +L++ G + AA N
Sbjct: 453 NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491
|
Length = 510 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 35/211 (16%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
L ++N I+ G V +VG++GAGK+++L + G + + P +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS- 456
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS- 1357
A++P G + + L S + E+ + +G+S
Sbjct: 457 --ALIP-------GEYEPEFGEVTILEHL--RSKTGDLNAAVEI--------LNRAGLSD 497
Query: 1358 ----------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--K 1405
S GQ++ LA+ L + VL +DE A++D TA + IS
Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557
Query: 1406 GMTVITIAHR--ISTVLNMDEILILDHGHLP 1434
G+T+I + HR + L D ++++ +G +P
Sbjct: 558 GITLIVVTHRPEVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 59/245 (24%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 673
+ ++ VS L KG ++ ++GE GSGKS L +I+G + + I G
Sbjct: 13 TDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI-VGGEILFDG 71
Query: 674 ------------------IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLK 708
IA + Q P + I + + + ++ +
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE-R 130
Query: 709 ACTLDVDISLMVGGDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSA 763
A +++ +VG E+ + LSGG R R+ +A A+ + + D+ +A
Sbjct: 131 A----IELLELVGIPDP---ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 764 VDAQVARWILSNAIMGPHMLQKTR-------ILCTHNVQAIS-AADMVVVMDKGQVKWIG 815
+D V IL +L++ + IL TH++ ++ AD V VM G++ G
Sbjct: 184 LDVTVQAQILD-------LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236
Query: 816 SSADL 820
++
Sbjct: 237 PVEEI 241
|
Length = 316 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHASG-- 672
L+ +SL + + A+IG G GKS+ L + GE++L +I+
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVDI 716
+ V Q P +I +N+ +G K Y + +L+ L +V
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 776
L E + LSGGQ+ RL +ARA+ ++ ++D+ SA+D +A +
Sbjct: 142 RL---------HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEEL 191
Query: 777 IMGPHMLQK--TRILCTHNVQ 795
I H L+ T I+ THN+Q
Sbjct: 192 I---HELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V +N SL + +G + ++G GSGKS+L+ + + T G I G
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Query: 673 -----SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 723
I+ V Q +P T+ +N+ FG +E + +++ + G
Sbjct: 102 ELRRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
Y E LSGG + R+ LARA+ + DI ++D+ SA+D + + + L
Sbjct: 159 DKYPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 784 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGS 816
+KT + TH++ A+ D + +M G++ +G+
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 23/216 (10%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV---------DGLNII 1289
AL++I++T E I+G +G+GKS+++ L G I V + +I
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1290 NTPV-------RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
P ++LR R ++V Q P LF+ ++ ++ + L + K K
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--LGVKKSEAKKLAKF 158
Query: 1341 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ +GL +++++ S S GQ++ + +A L ++L DE TA +D + +
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
Query: 1400 I-SSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
I ++ TV I H + VL + DE++++D G +
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254
|
Length = 320 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 792
LSGGQR R+A+ R + +++LD+ LS +DA + R + I H L +T I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL-RVQMRIEISRLHKRLGRTMIYVTH 192
Query: 793 N-VQAISAADMVVVMDKGQVKWIGSSADL 820
+ V+A++ AD +VV+D G+V +G +L
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 41/232 (17%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1278
++ F V+ Y ALH+++ I G V ++G GAGK+++L L CG
Sbjct: 5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL------CGDPR 56
Query: 1279 ---GQILVDGLNIINTPV-RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1333
G+I+ DG +I + + +R A+VP+ +F ++ +NL M
Sbjct: 57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL---AMGGFFA----- 108
Query: 1334 EKCHVKEEVEAVG------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1387
E+ +E ++ V E ++ +G + S G++Q++ + RAL+ ++L LDE +
Sbjct: 109 ERDQFQERIKWVYELFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
Query: 1388 VDAQTASILQNAISSECK-----GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ A I+ I + GMT+ + + L + D +L++GH+
Sbjct: 168 L----APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHV 215
|
Length = 237 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 39/199 (19%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV----DGLNIINTPVR- 1294
L +++ ++ G V + G +G+GKS++L +L+ GQILV + ++++ R
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 1295 --DLRGR--------FAVVPQ--------SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
++R V+P+ P L G R+ K +L +
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVA-------RAKAADLLTRL 139
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
++ E + ++ TF SG G++Q + +AR + +L LDE TA++DA +++
Sbjct: 140 NLPERLWSLAPATF---SG-----GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 1397 QNAIS-SECKGMTVITIAH 1414
I ++ +G ++ I H
Sbjct: 192 VELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 27/242 (11%)
Query: 1219 FQGLIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1271
+ L+E +N+ T RY+ A+ ++FT+ G + I+G G+GKS++ L
Sbjct: 1 VETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 1272 RLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN------LD-PFH 1322
+ G++L+D L+ + R R R ++ Q P SL LD P
Sbjct: 61 GMIEPTSGELLIDDHPLHFGDYSYRSQRIR--MIFQDP---STSLNPRQRISQILDFPLR 115
Query: 1323 MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+N DL+ EK + E + VGL + GQ+Q + LARAL+ KV+
Sbjct: 116 LNTDLEP-EQREK-QIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIA 173
Query: 1382 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCGC 1438
DE A++D S L N + E +G++ I + + + ++ D++L++ G + G
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
Query: 1439 AA 1440
A
Sbjct: 234 TA 235
|
Length = 267 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-07
Identities = 112/549 (20%), Positives = 199/549 (36%), Gaps = 75/549 (13%)
Query: 285 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLS 344
GLL +N ++ L L +FL G L + ++ ++ + + + +
Sbjct: 31 GLLAFINQALIETADTSLLVLPEFL----GLL--LLFMVSSLISQLGLTTLGQHFIY--- 81
Query: 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW--SL 402
KLRS + +K L L + ++ D R ++ A S ++
Sbjct: 82 ----KLRSEFI----KKILDTPLERIERLGSARLLAGLTSDV-RNISFAFSRLPELVQAI 132
Query: 403 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ----KDERIR 458
+G A YL Y K +T++ I V W ++ K M +D+
Sbjct: 133 ILTLGSAAYLAYLSPKM-----FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQN 187
Query: 459 RTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 516
IL + L + E + ++ L + E +H R W + L
Sbjct: 188 DYQTILEGRKELTLNRERAEYVHNN-LYIPDAQEYRHHIIRANTFHLLAVNW-SNIMLLG 245
Query: 517 LFTFGLFALMGHQL-----DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571
L GL + L + A + LF L +PL S ++ L+ A ++ ++ +
Sbjct: 246 LI--GLVFWLALSLGWASTNVAATIVLVLLF--LRTPLLSAVGILPTLLTAQVAFNKIAK 301
Query: 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 631
+ YK + + P + L +++ ++ ++ + ++
Sbjct: 302 L-ELAPYKADFPRPQAFPDW--KTLE----------LRNVRFAY-----QDNAFHVGPIN 343
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP---WILSGTI 688
L + +G LV +IG GSGKS+L + G G I G Q+ + S
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 689 RDNILF-----GKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
D LF + PQ + L+ L SL G + + LS GQ+ RL
Sbjct: 404 SDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLN-DGRFS-----NLKLSTGQKKRL 457
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADM 802
AL A+ DI +LD+ + D R + KT +H+ AD
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517
Query: 803 VVVMDKGQV 811
++ M GQ+
Sbjct: 518 LLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 673
+ L+ +S + KG + ++G G+GK++ + ILG ++ G + G
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR 71
Query: 674 IAYVPQVPWILSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
I Y+P+ G + D ++ Y Q + +D L Y
Sbjct: 72 IGYLPEE----RGLYPKMKVIDQLV----YLAQLKGLKKEEARRRIDEWLERLELSEYAN 123
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
++ LS G + ++ AV H ++ +LD+ S +D V +L + I KT I
Sbjct: 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVI 182
Query: 789 LCTHNVQAISA-ADMVVVMDKGQV 811
L TH ++ + D V++++KG+
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 30/214 (14%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
+ VL VSL + KG +VA++G GSGKS+LL+ + G T G + +G
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS 74
Query: 673 ---------SIAYVPQVPWILSG-TIRDNI---LFGKNYDPQSYSETLKACTLDVDISLM 719
+ ++ Q +L T +N+ L + E V +
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-- 132
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
I + LSGG+R R+A+ARA+ + + + D+ +D A+ I + ++
Sbjct: 133 -----HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLE 186
Query: 780 PHMLQKTR-ILCTHNVQAISAADMVVVMDKGQVK 812
+ T ++ TH+++ D V+ M GQ+
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 36/187 (19%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---- 1295
++FT+ G + + G G+GK+++L + L P G I +DG +I + V +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVK 1352
L R A+ P L ++ +NL+ F W+ E+ + +EAVGL
Sbjct: 78 LGHRNAM---KPAL---TVAENLE-F--------WAAFLGGEELDIAAALEAVGL----- 117
Query: 1353 ESGIS------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1405
+ ++ S GQ++ + LAR L+ + + LDE TA +DA ++ I +
Sbjct: 118 -APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 1406 -GMTVIT 1411
G+ +
Sbjct: 177 GGIVIAA 183
|
Length = 207 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 57/238 (23%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
+Y +N V+ V L +P+ + A++G G GKS+LL + L E G +
Sbjct: 13 YYGSNH-----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR 67
Query: 670 ASGSIAYVPQVPWILSG----------------TIRDNILFGKNYD---------PQSYS 704
G Y P V I TI DN+ G + +
Sbjct: 68 LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVE 127
Query: 705 ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764
LK L ++ + + NLSGGQR RL +ARA+ I ++D+ + +
Sbjct: 128 WALKKAALWDEVK-------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 765 D----AQVARWILSNAIMGPHMLQK--TRILCTHN-VQAISAADMVVVMDKGQVKWIG 815
D A++ + L+K T +L TH+ QA +D V + G++ +G
Sbjct: 181 DPVGTAKIEELLFE--------LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-------DGLNIINT 1291
L +++ T+ G V + G +GAGKS++L +L+ G+ILV D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1292 PVRDLRGR--------FAVVPQSPFL--FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
V ++R + V+P+ L L + P + +L + ++ E
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP-REAARARARELLARLNIPER 141
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
+ + TF SG G++Q + +AR + +L LDE TA++DA ++ I+
Sbjct: 142 LWHLPPATF---SG-----GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
Query: 1402 S-ECKGMTVITIAH 1414
+ +G +I I H
Sbjct: 194 EAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 48/241 (19%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICG 1278
IE +N+ ++ L +H ++ T++ G + +VG +G+GKS A + P
Sbjct: 5 IELRNIALQAAQPL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61
Query: 1279 GQILVDGLNIINTPV--RDLRGR-FAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLE 1334
G++L+DG PV LRGR A + Q+P R +P H M+ E
Sbjct: 62 GRVLLDG-----KPVAPCALRGRKIATIMQNP-------RSAFNPLHTMHT-----HARE 104
Query: 1335 KCHVK----------EEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
C +EAVGLE +K S G Q + +A ALL + +
Sbjct: 105 TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164
Query: 1382 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLPHC 1436
DE T ++D A+ +L++ + GM ++T H + V + D++ ++ HG +
Sbjct: 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVT--HDMGVVARLADDVAVMSHGRIVEQ 222
Query: 1437 G 1437
G
Sbjct: 223 G 223
|
Length = 254 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 30/195 (15%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1293
L +N T++ G I+G G+GKS++ + + +T G+IL DG +I+
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT---EGEILFDGEDILELSPD 76
Query: 1294 -RDLRGRFAVVPQSPFLFEG-SLRDNL----------DPFHMNDDLKIWSVLEKCHVKEE 1341
R G F + Q P G + D L ++ E + EE
Sbjct: 77 ERARAGIF-LAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
LE +V E FS G+++ + + LL K+ LDE + +D I+ I+
Sbjct: 136 F----LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188
Query: 1402 S-ECKGMTVITIAHR 1415
+ +G V+ I H
Sbjct: 189 ALREEGRGVLIITHY 203
|
Length = 251 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 1254 GIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPVR--DLRGRFAVVPQS 1306
I+G +G GKS+ L L R+ + G++ NI V LR + ++V
Sbjct: 37 AIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96
Query: 1307 PFLFEGSLRDNL---------DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
P LF S+ DN+ P DD+ + S L+ + +E++ + +S +
Sbjct: 97 PNLFPMSVYDNVAYGVKIVGWRPKLEIDDI-VESALKDADLWDEIK-----HKIHKSALD 150
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHR 1415
S GQ+Q +C+ARAL KVL +DE +D + +++ I S +T++ ++H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 1416 ISTVLNMDEILILDHGH 1432
+ V + + G+
Sbjct: 211 LHQVSRLSDFTAFFKGN 227
|
Length = 261 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
+ VS + +G + ++G G+GK++ + + + T G +G
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71
Query: 673 --SIAYVPQ---VPWILSGTIRDNI-LFGKNYD------PQSYSETLKACTLDVDISLMV 720
I V Q V L+G +N+ + + Y + E L L
Sbjct: 72 RRRIGIVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERIDELLDFVGL-------- 121
Query: 721 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---WILSNA 776
+ A ++ V SGG R RL +AR++ H ++ LD+ +D Q R W
Sbjct: 122 -LEAA---DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ-TRAHVWEYIEK 176
Query: 777 IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ + T +L TH + +A D V ++D G++ G+ +L
Sbjct: 177 LKEEFGM--TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 42/167 (25%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFG 695
G ++ ++G GSGK++L ++ E+ G + + G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVI-------------YIDGE-------- 39
Query: 696 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
D+ ++ + +G K + SG R RLALA A D+
Sbjct: 40 -----------------DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 756 MLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCTHNVQAIS 798
+LD++ S +DA+ +L + +L K ++ T N +
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672
L V+L + GS A IG GSGKS+++ + G + T GS+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYS-ETLKACTLDVDISLMVGGDMAY 726
+ V Q P + T+ ++ FG PQ++ +A L + +VG +
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFG----PQNFGVSQEEAEALAREKLALVGISESL 138
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQ R+A+A + I +LD+ + +D + R L H T
Sbjct: 139 FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK-GRKELMTLFKKLHQSGMT 197
Query: 787 RILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820
+L TH + ++ AD V V++KG++ G D+
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 43/221 (19%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
+ + L +S + KG +V IG G+GK++ L + G + T G + +G V
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV 84
Query: 678 P-------------------QVPWILSGTIRDNILFGK---NYDPQSYSETLKACTLDVD 715
P Q+ W L + D+ + P + + L + +D
Sbjct: 85 PWKRRKKFLRRIGVVFGQKTQLWWDLP--VIDSFYLLAAIYDLPPARFKKRLDELSELLD 142
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+ ++ + LS GQR R +A A+ H +I LD+ +D VA+ + N
Sbjct: 143 L-----EELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV-VAQENIRN 194
Query: 776 AIMGPHMLQKTR----ILCTHNVQAISA-ADMVVVMDKGQV 811
+ + R +L +H ++ I A A V+V+DKG++
Sbjct: 195 FL---KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEM 661
I+Q + S Y N ++ LN VSL + A+IG GSGKS+LL SI L
Sbjct: 5 ILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
Query: 662 MLTHGSIHASGSIAYVP---------------QVPWILSGTIRDNILFGKNYDPQSYSET 706
+ GSI +G Y P Q P +I +N+++G +
Sbjct: 61 VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQV 120
Query: 707 LKACTLDVDISLMVGGDM-----AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761
L V+ SL G + + + + LSGGQ+ R+ +AR + I +LD+
Sbjct: 121 LDEA---VEKSL-KGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176
Query: 762 SAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
SA+D A I + T +L T ++Q S
Sbjct: 177 SALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 39/200 (19%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L ++ G + I+G +G+GKS+ L + L G I+V+G I VRD G+
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI--NLVRDKDGQ 78
Query: 1300 FAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWS---VLEKCHVKEEVEAVGL------- 1347
V ++ LR L H N +WS VLE ++ ++ +GL
Sbjct: 79 LKVADKNQL---RLLRTRLTMVFQHFN----LWSHMTVLENV-MEAPIQVLGLSKQEARE 130
Query: 1348 --ETFVKESGIS----------FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1391
++ + GI S GQ+Q + +ARAL +VL DE T+ +D +
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1392 TASILQNAISSECKGMTVIT 1411
I+Q ++ E K M V+T
Sbjct: 191 VLRIMQQ-LAEEGKTMVVVT 209
|
Length = 257 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVP 681
L+ +++ + G V ++G G+GKS+LL I E + T G+I +G ++ + +P
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 682 W--------------ILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ + + +N+ F P+ + + A V +S
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS---HKHR 131
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
A E LSGG++ R+A+ARA+ + I + D+ +D I+ N + +
Sbjct: 132 ALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKKINKAG 186
Query: 785 KTRILCTHN 793
T ++ TH
Sbjct: 187 TTVVVATHA 195
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 17/179 (9%)
Query: 1245 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1304
+ + G +G++G GAGK+++L A+ L P G + V G VP
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVP 55
Query: 1305 QSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEK------CHVKEEVEAVGLETFVKESGI 1356
Q E + + H M+ L + V++ + VGL
Sbjct: 56 QR---HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG 112
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAH 1414
S GQRQ + +ARAL VL LDE +D T +L G ++ H
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG 672
+ L V L +P ++A IG G GKS+LL + G ++ +I+ S
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 673 --------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
+ V Q P +I +NI F + Y L D + ++
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRAN--GYKGNLDELVEDSLRRAAIWEEV 151
Query: 725 A-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ EKG LSGGQ+ RL +ARA+ D+ ++D+ SA+D R + +
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-- 209
Query: 784 QKTRILCTHNVQAIS 798
Q T I+ THN+Q S
Sbjct: 210 QYTIIMVTHNMQQAS 224
|
Length = 274 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 35/187 (18%)
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300
++FT+ G V I G GAGK+S+L L L G++L G P+R R +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG-----EPIRRQRDEY 72
Query: 1301 AVVPQSPFLFEGSL---RDNLDPF----------HMNDDLKIWSVLEKCHVKEEVEAVGL 1347
L+ G + L DD +W L + VGL
Sbjct: 73 H----QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ---------VGL 119
Query: 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTANVDAQTASILQNAISSECK- 1405
F S GQ++ + LAR L + + LDE TA +D Q + L+ ++ +
Sbjct: 120 AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA-IDKQGVARLEALLAQHAEQ 178
Query: 1406 -GMTVIT 1411
GM ++T
Sbjct: 179 GGMVILT 185
|
Length = 204 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 22/209 (10%)
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301
++ + G + +VG GAGKS++L + L P G I G + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1302 VVPQSPFLFEGSLRDNLDPFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
+ Q F + F D + + E EA+GL+ + S
Sbjct: 74 LSQQQTPPF------AMPVFQYLTLHQPDKTRTEAVAS-ALNEVAEALGLDDKLGRSVNQ 126
Query: 1358 FSVGQRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTV 1409
S G+ Q + LA +L+ + ++L LDE ++D + L +S C +G+ V
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186
Query: 1410 ITIAHRISTVL-NMDEILILDHGHLPHCG 1437
+ +H ++ L + D + +L G L G
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASG 215
|
Length = 248 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY +L ++L + K + A IG G GKS+ L + GE+
Sbjct: 14 WY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD 68
Query: 663 LTHGSIHA--------SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 713
+ +++ + V Q P +I DN+ +G P+ + LD
Sbjct: 69 IDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG----PKLHGLAKNKKKLDE 124
Query: 714 -VDISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V+ SL G +G++ LSGGQ+ RL +ARA+ + ++D+ SA+D V
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-V 183
Query: 769 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
A ++ N I L+K T I+ TH++ QA +D V G++ ++ ++
Sbjct: 184 ATNVIENLI---QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 9e-07
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------S 673
SL + +G + ++G GSGKS+++ + + T G + G
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
IA V Q ++ T+ DN FG + E + LD +L G Y
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREK-ALD---ALRQVGLENYAHSYPD 163
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGG R R+ LARA+ DI ++D+ SA+D + + + Q+T + +H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 793 NV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ +A+ D + +M G+V +G+ ++
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
Length = 400 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 62/225 (27%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V + VSL + KG + A++GE G+GKS+L+ + G G I G
Sbjct: 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISL 718
I V Q VP + T+ +NI+ G E K +D ++S
Sbjct: 78 RLGIGMVHQHFMLVP---TLTVAENIILG--------LEPSKGGLIDRRQARARIKELSE 126
Query: 719 MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD---VLSAVDAQVARW- 771
G + A + + LS G++ R+ + +A+Y G+ + +LD+ VL+ +
Sbjct: 127 RYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLT--PQEADELF 180
Query: 772 -ILSNAI-MGPHMLQKTRILCTH---NVQAISAADMVVVMDKGQV 811
IL G KT I TH V AI AD V V+ +G+V
Sbjct: 181 EILRRLAAEG-----KTIIFITHKLKEVMAI--ADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 52/221 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VL VSL + +G V ++G G GKS+L +LG G++ G
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 673 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
S + V P+ V I+ +R ++ +E L L +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED-- 143
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
+ LSGGQ R+ +ARA+ + +LD+ +S +D + IL
Sbjct: 144 --------ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE---- 191
Query: 779 GPHMLQKTR-------ILCTHNVQAI-SAADMVVVMDKGQV 811
+L+K + + TH+++ + S V VMDKGQ+
Sbjct: 192 ---LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 40/197 (20%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGS--------------- 673
+ K + IG G GKS++L S+ L + G +H G
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 674 IAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTL--DVDISLMVGGDMA 725
I V Q P S +I DN+ FG K L+ L +V L V
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV----- 145
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
G++LSGGQ+ RL +ARA+ ++ +LD+ SA+D R + +M
Sbjct: 146 ----SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV--EELMVELKKDY 199
Query: 786 TRILCTHNV-QAISAAD 801
T L THN+ QAI AD
Sbjct: 200 TIALVTHNMQQAIRVAD 216
|
Length = 261 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 79/239 (33%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------I 674
V+ + L + G + ++G G GKS+LL + G +T G I G I
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI 78
Query: 675 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLK----------------ACTLDV 714
A V Q P + ++R+N+ +G LK A L++
Sbjct: 79 AMVFQNYALYPHM---SVRENMAYG-----------LKIRGMPKAEIEERVAEAARILEL 124
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWI 772
+ + K LSGGQR R+A+ RA+ +++ D+ LS +DA+ V
Sbjct: 125 E---------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRV---- 171
Query: 773 LSNAIMGPHM------LQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
M L + T + TH+ V+A++ AD VVVM+ G + IG+ ++
Sbjct: 172 --------QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
Length = 356 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 62/230 (26%), Positives = 97/230 (42%), Gaps = 53/230 (23%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L + IE +V +VGR GAGKS+++ L G +L DG I + R
Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKIL------NGEVLLDDGRIIYEQDLIVAR-- 70
Query: 1300 FAVVPQSP----------FLFEG--SLRDNLDPFH--------------MNDDLKIWSVL 1333
+ Q P F+ EG + L +H +N+ K+ L
Sbjct: 71 ---LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 1334 EKCH---------VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
+ H + E + +GL+ S S S G + L RAL+ + VL LDE
Sbjct: 128 D--HHNLWQLENRINEVLAQLGLDPDAALS--SLSGGWLRKAALGRALVSNPDVLLLDEP 183
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
T ++D +T L+ + + +G ++I I+H S + NM I+ LD G L
Sbjct: 184 TNHLDIETIEWLEGFLKT-FQG-SIIFISHDRSFIRNMATRIVDLDRGKL 231
|
Length = 635 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLR 1297
A+ D++F + G VGI G G G+S ++ A+ L G+IL++G +++ R+ R
Sbjct: 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332
Query: 1298 GR-FAVVPQSPF----LFEGSLRDNL-------DPFHMNDDLKIWSVLEKCHVKE----- 1340
A VP+ + + SL +NL PF L + K +E
Sbjct: 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD-RRAIRK-FARELIEEF 390
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+V A + + S S G +Q + LAR L + +L + T +D + +
Sbjct: 391 DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 1401 SSECKGMTVITIAHRISTVLNMDEILIL 1428
+ + IS L DEIL L
Sbjct: 447 LELRDAGKAVLL---ISEDL--DEILEL 469
|
Length = 501 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
VL ++ +G ++A++G G+GKS+LL + G + G++ G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 674 ---IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ V Q P + + + ++ FG P + + V +L G
Sbjct: 67 RQRVGLVFQDPDDQLFAADVDQDVAFG----PLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
LSGG++ R+A+A AV D+ +LD+ + +D +L+ + T +
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA-ILRRLRAEGMTVV 181
Query: 789 LCTHNV 794
+ TH+V
Sbjct: 182 ISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-06
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
+L+ VSL L G +VA++G G+GKS+LL ++ GE+ G +
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
|
Length = 258 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 43/156 (27%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQVPW 682
++++ +S LP G +V VIG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ--- 392
Query: 683 ILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG----- 728
RD + DP + S L DI + +G ++ AY+G
Sbjct: 393 -----SRDAL------DPNKTVWEEISGGL-------DI-IQLGKREVPSRAYVGRFNFK 433
Query: 729 ----EKGV-NLSGGQRARLALARAVYHGSDIYMLDD 759
+K V LSGG+R R+ LA+ + G ++ +LD+
Sbjct: 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681
E + LN +S +P+G +V +IG GSGKS+L N I G M G++ GS A +
Sbjct: 35 EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA--- 91
Query: 682 WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----LS 735
I SG + L G +N + + L + I ++ + A IG K + S
Sbjct: 92 -ISSGL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEII--EFADIG-KFIYQPVKTYS 145
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVD 765
G ++RL A +V+ DI ++D+ LS D
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGD 175
|
Length = 549 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ-VPWILSGTIRD--- 690
+ ++ ++G G GK++ + + G + G I +++Y PQ + GT+RD
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVY 749
+I P +E K ++ ++ ++ V LSGG+ R+A+A +
Sbjct: 84 SITKDFYTHPYFKTEIAKPLQIE---QIL---------DREVPELSGGELQRVAIAACLS 131
Query: 750 HGSDIYMLDDVLSAVDAQ--------VARWILSNAIMGPHMLQKTRILCTHNVQAIS-AA 800
+DIY+LD+ + +D + + R+ +N +KT + H++ I A
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--------EKTAFVVEHDIIMIDYLA 183
Query: 801 DMVVVMD 807
D ++V +
Sbjct: 184 DRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 39/200 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
L S + G +V V+G GSG S+LL ++ T G++ G I Y
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN---RTEGNVSVEGDIHY---------N 70
Query: 687 TIRDNILFGKNYDPQS-YS--ETLKACTLDV----DISLMVGGDMAYIGEKGVNLSGGQR 739
I F + Y + Y E + TL V D +L G+ ++ +G+ SGG+R
Sbjct: 71 GI-PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGN-EFV--RGI--SGGER 124
Query: 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
R+++A A+ + + D+ +D+ A IL + +L T ++
Sbjct: 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC------IRTMADVLKTTTFVSLYQ 178
Query: 800 A--------DMVVVMDKGQV 811
A D V+V+ +G+
Sbjct: 179 ASDEIYDLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------------ASG 672
VV+N +S + +G ++G G+GKS++ +LG + G I A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77
Query: 673 SIAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+I VPQ + T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFG-------MSTREIEAVIPSLL--EFARLESK 128
Query: 731 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 129 ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 187
Query: 787 RILCTHNV-QAISAADMVVVMDKG 809
+L TH + +A D + V++ G
Sbjct: 188 ILLTTHFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 40/173 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQ- 679
Q VL+ VSL L G ++ ++G G+GKS+L+ +LG + G I +G I YVPQ
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQK 75
Query: 680 ------VPWILS-------GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+P ++ GT +++IL LK V ++ M
Sbjct: 76 LYLDTTLPLTVNRFLRLRPGTKKEDIL-----------PALKR----VQAGHLIDAPMQ- 119
Query: 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAI 777
LSGG+ R+ LARA+ + + +LD+ VD QVA + L + +
Sbjct: 120 ------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
|
Length = 251 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 43/156 (27%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVPQVP 681
++++ +S LP G +V +IG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS- 395
Query: 682 WILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG---- 728
RD + DP + S L DI + VG ++ AY+G
Sbjct: 396 -------RDAL------DPNKTVWEEISGGL-------DI-IKVGNREIPSRAYVGRFNF 434
Query: 729 -----EKGV-NLSGGQRARLALARAVYHGSDIYMLD 758
+K V LSGG+R RL LA+ + G ++ +LD
Sbjct: 435 KGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470
|
Length = 556 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 46/200 (23%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIA 675
+N L + + +P LV V G GSGKS+L+N L +ASG
Sbjct: 7 NVHN-------LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----------YASGKAR 49
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAY--IGEKGV 732
+ +S + +D + ++ + Y +G+K
Sbjct: 50 LIS--------------------FLPKFSRNK---LIFIDQLQFLIDVGLGYLTLGQKLS 86
Query: 733 NLSGGQRARLALARAVYHGSD--IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGG+ R+ LA ++ +++LD+ + + Q +L I G L T IL
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI 145
Query: 791 THNVQAISAADMVVVMDKGQ 810
HN+ +S+AD ++ G
Sbjct: 146 EHNLDVLSSADWIIDFGPGS 165
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 53/206 (25%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAYVPQV 680
L +S+ +PK + A IG G GKS+LL L + G I G Y +V
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 681 ---------------PWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 715
P +I +N+++G + ++ +L+ L +V
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK 159
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 771
L E LSGGQ+ RL +ARA+ ++ +LD+ SA+D ++
Sbjct: 160 DRL---------HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL 210
Query: 772 I--LSNAIMGPHMLQKTRILCTHNVQ 795
I L + + T ++ THN+Q
Sbjct: 211 ITELKS--------KYTIVIVTHNMQ 228
|
Length = 272 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASGS- 673
L VS+ +P+ S+ A+IG G GKS+ L I G + L I+ G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 674 -------IAYVPQVPWILSGTIRDNI-----------------LFGKNYDPQSYSETLKA 709
+ V Q P +IR+NI L G++ D + E ++
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRD-DKDAEDELVER 179
Query: 710 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769
+ V + + + LSGGQ+ RL +AR + ++ ++D+ SA+D +A
Sbjct: 180 SLRQAALWDEVNDRL---DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IA 235
Query: 770 RWILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + I L + T ++ THN+Q
Sbjct: 236 TSKIEDLI---EELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 30/154 (19%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L++VSL + +G +V +IG G+GK++LL ++ G+ T G I G
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 673 -SIAYVPQVPWILSG-TIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
++A VP+ + S T+ +N+ G + + + E +K V + E
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK----------WVYELFPRLHE 129
Query: 730 KGVN----LSGGQRARLALARAVYHGSDIYMLDD 759
+ + +SGG++ LA+ RA+ + +LD+
Sbjct: 130 RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 45/221 (20%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L++++ +++ G V ++GR+G GKS++ L L G + G P+ L
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG-----EPLAKLNRA 82
Query: 1300 ------------F-----AVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEE 1341
F AV P+ ++R+ + P L L + E
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRK------TVREIIREPLRHLLSLDKAERLAR--ASEM 134
Query: 1342 VEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ AV L K S GQ Q +CLARAL K+L LDE +N+D +LQ
Sbjct: 135 LRAVDLDDSVLDKRPP-QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAG 189
Query: 1400 ISSECK------GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ K G + I H + V ++++D+G +
Sbjct: 190 VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 39/207 (18%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY E+Q L VS+ +PK S+ A+IG G GKS+ + I G++
Sbjct: 21 WY---GEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75
Query: 663 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
+ I+ ++ V Q P +I DN+ +G P+ + K V
Sbjct: 76 IEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG----PRIHGANKKDLDGVV 131
Query: 715 DISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
+ +L ++ ++LSGGQ+ RL +AR + I + D+ SA+D ++
Sbjct: 132 ENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-IST 190
Query: 771 WILSNAIMGPHMLQK--TRILCTHNVQ 795
+ + IM L+K T ++ THN+Q
Sbjct: 191 ARIEDLIMN---LKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
E + + + +S L G + V G GSGK++LL + G G + +G
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 673 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 726
+ Y+ P I + ++ +N+ F + E ++ V +
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF---WHADHSDEQVEEALARVG--------LNG 117
Query: 727 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-VAR 770
++ V LS GQ+ R+ALAR + G +++LD+ +A+D VAR
Sbjct: 118 FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-----KTRI 788
LSGGQ+ R+A+ARA+ + + D+ SA+D ++ +L M T +
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV------MKDLAEEGMTMV 189
Query: 789 LCTHNVQ-AISAADMVVVMDKGQV 811
+ TH + A AD V+ MD G++
Sbjct: 190 VVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661
+ + +++ + N ++ +L +S + G A++G G+GK++LL+ + GE
Sbjct: 28 NEPLIELKNVSVR--RNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81
Query: 662 MLTHGSI---------------------HASGSIAYVPQVPWILSGTIRDNILFGKNYDP 700
+ G + S + +V T+RD +L G +
Sbjct: 82 PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE----TVRDVVLSGF-FAS 136
Query: 701 QS-YSETLKACTLDVDISLM-VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
Y E L A L L+ + G +LS G++ R+ +ARA+ ++ +LD
Sbjct: 137 IGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 759 DVLSAVDAQVARWILSNAI-------MGPHMLQKTRILCTHNVQAISA 799
+ +D +AR L N + P +L TH+ + I
Sbjct: 197 EPAQGLDL-IAREQLLNRLEELAASPGAPALL-----FVTHHAEEIPP 238
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-06
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 39/241 (16%)
Query: 1220 QGLIEFQN--VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-- 1275
Q L+ +N V R + ++ ++D++ IE G + +VG +G+GKS ++ RL P
Sbjct: 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 1276 ---ICGGQILVDGLNIINTPVRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1328
G I G ++++ + LRG + A++ Q P + +L+P H + +
Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPLH-TLEKQ 114
Query: 1329 IWSVLEKCHVKEEVEAVGLETF--VKESGI------------SFSVGQRQLICLARALLK 1374
++ VL H EA E + GI S G+RQ + +A ALL
Sbjct: 115 LYEVLS-LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT 173
Query: 1375 SSKVLCLDECTANVDAQT-ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDH 1430
++L DE T +D A ILQ + E M ++ I H +S V + D + ++ +
Sbjct: 174 RPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLADRVAVMQN 232
Query: 1431 G 1431
G
Sbjct: 233 G 233
|
Length = 529 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-06
Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 49/277 (17%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------IAY 676
++ +S +P G + ++G G+GK++ ILG + T G I +G I Y
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76
Query: 677 VPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+P+ + T+ D + + K + L+A ++I +K
Sbjct: 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-------GKKTKKIK 129
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LS G + ++ AV H ++ +LD+ S +D V +L +AI T I +H
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSH 188
Query: 793 NVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 851
++ + D ++++ KGQ T L+ +++R S
Sbjct: 189 RMEHVEELCDRLLMLKKGQ-------------------------TVLYGTVEDIR--RSF 221
Query: 852 ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTV 888
K+++++ + + I+++ + K+G + +
Sbjct: 222 GKKRLVIESDLSLEELANIPGILKITETKDGSWRIQI 258
|
Length = 300 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-06
Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 54/218 (24%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IE +N++ + L + D++F + G VG++G GAGKS+ LFR+ I G +
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKST----LFRM--ITGQEQP 374
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM--------NDDLKIWSVLE 1334
G I V + A V QS RD LDP D +++
Sbjct: 375 DSGTIKIGETV-----KLAYVDQS--------RDALDPNKTVWEEISGGLDIIQLGKR-- 419
Query: 1335 KCHVKEEVEA---VGLETFV-----KESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
EV + VG F K+ G S G+R + LA+ L VL LDE T
Sbjct: 420 ------EVPSRAYVGRFNFKGSDQQKKVG-QLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
Query: 1387 NVDAQTASILQNAISSECKGMTVITIAH------RIST 1418
++D +T L+ A+ E G V+ I+H RI+T
Sbjct: 473 DLDVETLRALEEAL-LEFAGCAVV-ISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL---FRLTPI 1276
Q L+ + MR+ L A++++N + V ++G GAGK+++ N L ++ T
Sbjct: 3 QPLLSVSGLMMRFGGLL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-- 58
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVP--QSPFLF-EGSLRDNL---DPFHMNDDLKIW 1330
GG IL+ G +I P + R VV Q LF E ++ +NL + L +
Sbjct: 59 -GGTILLRGQHIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGL--F 114
Query: 1331 SVLEK--CHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378
S L K + E EA VGL + + GQ++ + +AR ++ ++
Sbjct: 115 SGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174
Query: 1379 LCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHG 1431
L LDE A ++ + L I+ +TV+ I H + V+ + D I +++ G
Sbjct: 175 LMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 662
WY E+Q LN ++L + + + A+IG G GKS+ L I GE++
Sbjct: 13 WY---GEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67
Query: 663 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSET 706
L +I+ + V Q P +I DN+ +G K +
Sbjct: 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWA 127
Query: 707 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
LK L ++ + + + LSGGQ+ RL +AR + D+ ++D+ SA+D
Sbjct: 128 LKKAALWDEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
I +M + T ++ THN+Q S
Sbjct: 181 ISTLKI--EDLMVELKKEYTIVIVTHNMQQAS 210
|
Length = 251 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 8e-06
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ VL ++L + G +VAV+G+ G+GK++LL ILG G Y P
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-------GRGEEKYRPDSGK 447
Query: 683 ILSGTIRDNILFGKNYDPQSYSET----LKACTLDVDISL----MVGGDMAYIGEKGVN- 733
+ + L Y+P+ T L++ T D++ ++ G A + + +
Sbjct: 448 VEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSE 507
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LS GQ+ R LA+ + ++ ++D+ + +D A + T I+ TH
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 794 VQAISA--ADMVVVMDKGQV 811
+ +A D ++++ G+V
Sbjct: 568 PEVGNALRPDTLILVGYGKV 587
|
Length = 593 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 25/210 (11%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTP--ICGGQILVDGLNIINTPVRDL 1296
L +++ + G + ++G +GAGK++++NAL FR G +L++G+ I +++
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKEM 97
Query: 1297 RGRFAVVPQSPFLFEGSL--RDNL---DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL--- 1347
R A V Q LF +L R++L M + + EK V E ++A+GL
Sbjct: 98 RAISAYVQQDD-LFIPTLTVREHLMFQAHLRMPRRV---TKKEKRERVDEVLQALGLRKC 153
Query: 1348 -ETFVKESGI--SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1404
T + G S G+R+ + A LL +L DE T+ +D+ A + +
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 1405 -KGMTVITIAHRISTVL--NMDEILILDHG 1431
KG T+I H+ S+ L D+I+++ G
Sbjct: 214 QKGKTIICTIHQPSSELFELFDKIILMAEG 243
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 55/232 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------LGEMMLTHGSIHASGSIA 675
VL+ + L + +G +V +IG GSGKS+LL I G++++ + +
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV--DGLKVNDPKV 70
Query: 676 YV-----------------PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
P + T +N++FG P K L
Sbjct: 71 DERLIRQEAGMVFQQFYLFPHL------TALENVMFG----PLRVRGASKEEAEKQAREL 120
Query: 719 M--VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ----VA 769
+ VG + A Y E LSGGQ+ R+A+ARA+ + + D+ SA+D + V
Sbjct: 121 LAKVGLAERAHHYPSE----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176
Query: 770 RWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ + A G M ++ TH + A A ++ +DKG++ G L
Sbjct: 177 KVMQDLAEEGMTM-----VIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAY----- 676
L +++L + + + A+IG G GKS+ L ++ L + G + G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 677 ----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 724
V Q P +I DN+ +G P+++ K LD V+ SL
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG----PRTHGIKDKK-KLDEIVEKSL----KG 129
Query: 725 AYIGEK--------GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 772
A + ++ + LSGGQ+ RL +ARA+ ++ ++D+ SA+D ++ I
Sbjct: 130 AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI 189
Query: 773 LSNAIMGPHMLQK--TRILCTHNVQ 795
L+K T ++ THN+Q
Sbjct: 190 QE--------LKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 29/223 (13%)
Query: 1222 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
+I+ +NV+ RY + A+ +++ ++ G GIVG +GAGK+++ + +
Sbjct: 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 1279 GQILV---DGLNIINTPVRDLRGR----FAVVPQSPFLF-EGSLRDNL---------DPF 1321
G++ V D + P D RGR ++ Q L+ ++ DNL D
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL 398
Query: 1322 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+K L+ EE L+ + E S G+R + LA+ L+K +++ L
Sbjct: 399 AR---MKAVITLKMVGFDEEKAEEILDKYPDE----LSEGERHRVALAQVLIKEPRIVIL 451
Query: 1382 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM 1422
DE T +D T + ++I + E T I ++H + VL++
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV 494
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYV 677
+S +PKG +V +G G+GKS+ L + G ++ T G + +G SI V
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 678 ----PQVPWILSGTIRDNILFGK---NYDPQSYSETLKACT--LDVDISLMVGGDMAYIG 728
Q+ W L D++ K ++E L T LD++ L
Sbjct: 103 MGQKLQLWWDLP--ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-------- 152
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTR 787
LS GQR R LA A+ H + LD+ +D A+ + + + Q T
Sbjct: 153 -PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV-NAQANIREFLKEYNEERQATV 210
Query: 788 ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821
+L TH I+ D V+++D+GQ+ + G+ A L
Sbjct: 211 LLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL---------GEMMLTHGSIHASGS- 673
L ++L + K + A IG G GKS+LL N + GE++L +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 674 -------IAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLD--VDISLMVGGD 723
+ V Q P +I DNI FG + ++ S +E +D V+ +L
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAE------MDERVEWALTKAAL 142
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ +K G +LSGGQ+ RL +AR + ++ +LD+ SA+D
Sbjct: 143 WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG- 672
VL +++ P+ + A+IG G GKS+LL N I+ G ++L + +I++
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 673 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 723
+ V Q P +I DN+ FG P+ T ++ LD V+ SL
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFG----PRMLGTTAQS-RLDEVVEKSLRQAAL 133
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
+ + G+ LSGGQ+ RL +AR + ++ ++D+ SA+D I +M
Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI--EELMQ 191
Query: 780 PHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
T + THN+ QA A+D + G + G + ++
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 40/204 (19%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDL 1296
L D + ++ G V ++GR G+G S++L AL T G I +G+
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY-------- 74
Query: 1297 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL---ETFVKE 1353
FA ++ +D+ ++ V+E ++ FV+
Sbjct: 75 -KEFAEKYPGEIIYVSE-----------EDVHFPTLT----VRETLDFALRCKGNEFVR- 117
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTV 1409
GIS G+R+ + +A AL+ + VLC D T +D+ TA ++ ++ K T
Sbjct: 118 -GIS--GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT-MADVLKTTTF 173
Query: 1410 ITIAHRISTVLNM-DEILILDHGH 1432
+++ + ++ D++L+L G
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 12/198 (6%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI---INTPVRDLRG 1298
+I+ T+ G I+G +G GK+++L + G+IL DG NI + + +R
Sbjct: 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84
Query: 1299 RFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1357
R +++ QS LF + ++ DN+ + + + ++ + L V ++EAVGL K
Sbjct: 85 RMSMLFQSGALFTDMNVFDNV-AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE 143
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECKGMTVITIAHR 1415
S G + LARA+ ++ DE D T +L IS + G+T + ++H
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Query: 1416 ISTVLNMDEILILDHGHL 1433
+ VL+ I DH ++
Sbjct: 204 VPEVLS-----IADHAYI 216
|
Length = 269 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277
P + ++E +N+T +PS+ D++F + G +GI G GA ++ I+ LF +
Sbjct: 246 PGEVILEVRNLTSLRQPSI----RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301
Query: 1278 GGQILVDGLNIIN-TPVRDLRGRFAVVPQ---SPFLFE------GSLRDNLD----PFHM 1323
G I + G I N + FA+V + S ++ SL N+ +
Sbjct: 302 AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL 361
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLD 1382
D+ ++ K + ++++ ++T + I S S G +Q + + R LL ++L LD
Sbjct: 362 LDNSRM-----KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 1383 ECTANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
E T +D I Q K +I I+ + +L + D IL++ +G
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNG 467
|
Length = 491 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 2e-05
Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 53/243 (21%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 669
WY N + VL+ ++L + + + A IG G GKS+ L ++ L E G I+
Sbjct: 89 WYMNRTKH---VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145
Query: 670 ASGS---------------IAYVPQVPWILSGTIRDNILFGKNYD--------PQSYSET 706
G+ I V Q P +I DN+ +G + + ++
Sbjct: 146 FLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKS 205
Query: 707 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD- 765
LK+ L ++ + + G LSGGQ+ RL +ARA+ ++ ++D+ SA+D
Sbjct: 206 LKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 766 ---AQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 819
A++ IL L+K + I+ TH++ QA +D V +G ++ G +
Sbjct: 259 IATAKIEELILE--------LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT 310
Query: 820 LAV 822
+ +
Sbjct: 311 IFI 313
|
Length = 329 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSILGEMMLTHGSIHASGSIAY 676
+ L + L + + A+IG G GKS+ L N ++ + +T G++ G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT-GNVSLRGQNIY 75
Query: 677 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLD 713
P Q P +I +N+++G K ++ +LK +
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 773
++ ++ E ++LSGGQ+ R+ +AR + D+ +LD+ SA+D I
Sbjct: 136 DEVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP-----IS 183
Query: 774 SNAIMGPHML-----QKTRILCTHNVQAIS 798
S I +ML Q T IL TH++ S
Sbjct: 184 STQI--ENMLLELRDQYTIILVTHSMHQAS 211
|
Length = 252 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 670
+N L ++L +P + A+IG G GKS+LL I G++ + I+
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 671 SGSIA-------YVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVD 715
+ +A V Q P +I +N+ +G K + +L+ L +
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+ + LSGGQ+ RL +AR + D+ ++D+ SA+D I
Sbjct: 135 VK-------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI--E 185
Query: 776 AIMGPHMLQKTRILCTHNVQ 795
+M T ++ TH++Q
Sbjct: 186 ELMEELKKNYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 25/203 (12%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------HASG 672
+V++ +S + +G ++G G+GK++ L +LG GSI HA
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80
Query: 673 SIAYVPQV----PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ VPQ P T+R+N+L Y S + ++ + + A +G
Sbjct: 81 RVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVG 137
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
E LSGG + RL LARA+ + D+ +LD+ + +D Q AR ++ + KT +
Sbjct: 138 E----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTIL 192
Query: 789 LCTHNV-QAISAADMVVVMDKGQ 810
L TH + +A D + V+++G+
Sbjct: 193 LTTHFMEEAERLCDRLCVIEEGR 215
|
Length = 306 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 27/209 (12%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLR 1297
AL ++N + + ++G GAGKS++L LF + G IL G I + L
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE 72
Query: 1298 GRFAVVPQSPFLF-EGSLRDNL------------DPFHMNDDLKIWSVLEKCHVKEEVEA 1344
++V Q L + S+ DN+ D M D K +
Sbjct: 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----------TKAIFDE 121
Query: 1345 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-E 1403
+ ++ + + SV Q Q+I +A+A ++K++ +DE T+++ + + L I +
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 1404 CKGMTVITIAHRISTVLNM-DEILILDHG 1431
+G ++ I+H++ + + DEI IL G
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPIC-GGQILVDGLNIINTPVRDLR 1297
L+ + G + ++G +G+GKS++LNAL R+ G IL + P + +
Sbjct: 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQIL 139
Query: 1298 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGL----ETFV 1351
R V Q L+ ++R+ L + K + EK V E V + +GL T +
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTII 199
Query: 1352 KESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKGMTV 1409
S I S G+R+ + +A +L + +L LDE T+ +DA A ++ S KG T+
Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTI 259
Query: 1410 ITIAHRIST-VLNM-DEILILDHG 1431
+T H+ S+ V M D +L+L G
Sbjct: 260 VTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 45/216 (20%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMML--------THGSIH 669
L ++ KG +VA++G G+GKS+L N IL GE+++ +
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 670 ASGSIAYVPQVP--WILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMV 720
++ V Q P + + T+ +++ FG K + E LKA V
Sbjct: 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA----------V 125
Query: 721 GGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
G M K + LSGGQ+ R+A+A + +I +LD+ S +D A I+
Sbjct: 126 G--MEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL--- 180
Query: 780 PHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQV 811
+ L K T I+ TH+V + AD V VM G++
Sbjct: 181 -YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP 678
++ +S L G + V G G GK++LL + G + G + A
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 679 QVPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ ++ L G + +N+ F ++ ++ +L G +
Sbjct: 74 NILYLGHLPGLKPELSALENLHF--------WAAIHGGAQRTIEDALAAVGLTGFEDLPA 125
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRIL 789
LS GQ+ RLALAR + +++LD+ +A+D L ++ H L + +L
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVA--LLAGLLRAH-LARGGIVLL 182
Query: 790 CTH 792
TH
Sbjct: 183 TTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 30/198 (15%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHA 670
+N + VS+ P+ S+ A+IG G GKS++L SI G+++L I+
Sbjct: 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75
Query: 671 SGS--------IAYVPQVPWILSG-TIRDNILFGKNYD---PQSYS-ETLKACTLDVDIS 717
G + V Q P +I DN++ G + +S + E +++ V +
Sbjct: 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALW 135
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
V + + LSGGQ+ RL +AR + ++ ++D+ SA+D I +
Sbjct: 136 DEVKDRLK---SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI--EEL 190
Query: 778 MGPHMLQKTRILCTHNVQ 795
+ + T I+ THN+Q
Sbjct: 191 IEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 22/162 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------IAYVPQ 679
+L Q+S LP G L+ + G G+GK++LL I G + G I Y Q
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 680 VPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ ++ SG T+R+N L YD + L SL I
Sbjct: 76 LCFVGHRSGINPYLTLRENCL----YDIHFSPGAVGITELCRLFSL-----EHLIDYPCG 126
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
LS GQ+ ++AL R + +++LD+ L A+D I++
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168
|
Length = 200 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 55/223 (24%), Positives = 86/223 (38%), Gaps = 54/223 (24%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 7 LEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 1283 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1329
V+G I +D LR R +V Q F NL HM
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH-F--------NLWS-HM------ 108
Query: 1330 WSVLE-------------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARAL 1372
+VLE K E E VG+ S GQ+Q + +ARAL
Sbjct: 109 -TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167
Query: 1373 LKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVIT 1411
+V+ DE T+ +D + ++Q ++ E + M V+T
Sbjct: 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQ-DLAEEGRTMVVVT 209
|
Length = 256 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 50/204 (24%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT------HGSIHASGSIAYVPQV 680
L V L +P+ ++ A IG G GKS+ L L M T G I G Y P++
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRC-LNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 681 ---------------PWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGG- 722
P +I +N+ +G P+ + LD V+ SL G
Sbjct: 94 DVVELRARVGMVFQKPNPFPKSIYENVAYG----PRIHGLARSKAELDEIVETSLRKAGL 149
Query: 723 -----DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWIL 773
D + E G LSGGQ+ RL +ARA+ ++ ++D+ SA+D A+V I
Sbjct: 150 WEEVKDR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI- 206
Query: 774 SNAIMGPHMLQK--TRILCTHNVQ 795
L++ T ++ TH++Q
Sbjct: 207 -------DELRQNYTIVIVTHSMQ 223
|
Length = 267 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 32/202 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLN----------SILGEMMLTHGSIHA----S 671
+L V+ + KG +V ++G G GKS+LL+ S GE+ L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 672 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIG 728
I + Q + ++ N+LF + TLK A + +L G
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLF-------ALPATLKGNARRNAANAALERSGLDGAFH 129
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQ 784
+ LSGGQRAR+AL RA+ +LD+ S +D Q +W+ S
Sbjct: 130 QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV----RAAG 185
Query: 785 KTRILCTHNVQAISAADMVVVM 806
+ TH++Q + A V+ M
Sbjct: 186 IPTVQVTHDLQDVPAGSRVIEM 207
|
Length = 213 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 48/200 (24%), Positives = 77/200 (38%), Gaps = 47/200 (23%)
Query: 1241 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------------ 1288
++ I G I+G G GKS++L L RL G + +DG +I
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 1289 ------INTP----VRDL--RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1336
TP V++L RGR+ P P W ++
Sbjct: 84 GLLAQNATTPGDITVQELVARGRY---PHQPLFTR------------------WRKEDEE 122
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
V + ++A G+ +S + S GQRQ +A L + + ++ LDE T +D L
Sbjct: 123 AVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182
Query: 1397 QNAIS--SECKGMTVITIAH 1414
+S + KG T+ + H
Sbjct: 183 LELLSELNREKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 38/226 (16%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG-- 672
L+ +SL + L A+IG G GKS+ L I GE+ +I+ S
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 718
+ V Q P ++ DN+ +G K Q E+LK + +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK- 138
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
+ SGGQ+ R+ +ARA+ + +LD+ SA+D + I +
Sbjct: 139 ------DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 823
H Q T I+ THN+ QA +D + G + G + ++ ++
Sbjct: 193 LKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
V+N +S + G ++G G+GKS++ ILG G I G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 674 -IAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I VPQ + L T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYF-------GMSTREIEAVIPSLL--EFARLESK 165
Query: 731 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 224
Query: 787 RILCTHNV-QAISAADMVVVMDKG 809
+L TH + +A D + V++ G
Sbjct: 225 ILLTTHFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRD 1295
P I+F++ G VG+ G GAG+S ++ L+ T GQ+ +DG I I +P
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 1296 LRGRFAVVPQSPFLFEG-----SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVG 1346
+R + P+ EG S+ DN++ H+ I + E + + ++
Sbjct: 326 IRAGIMLCPEDR-KAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN 384
Query: 1347 LETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVD---------------A 1390
++T +E I S G +Q L R L + KV+ LDE T +D A
Sbjct: 385 IKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 1391 QTASILQNAISSECKGMTVITIAHRI 1416
Q ++L +SS+ V+ +A RI
Sbjct: 445 QGVAVL--FVSSDL--PEVLGVADRI 466
|
Length = 501 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 38/195 (19%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG----- 672
V+L + S+ A IG G GKS++L + + GE++L ++ G
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM---- 724
+I V Q P + +IRDN++ G + + L V+ SL G ++
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL---VEKSL-RGANLWNEV 138
Query: 725 -AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI---MGP 780
+ + G LSGGQ+ RL +ARA+ D+ ++D+ SA+D I + AI +
Sbjct: 139 KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-----ISTLAIEDLINE 193
Query: 781 HMLQKTRILCTHNVQ 795
T ++ THN+Q
Sbjct: 194 LKQDYTIVIVTHNMQ 208
|
Length = 258 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 52/228 (22%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGS------- 667
L +++ + + + A+IG G GKS+ L N GE++L +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 668 ---IHASGSIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDI 716
I I+ V Q P +I +N+ +G ++ + L+ L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 772
+G D+A+ NLSGGQ+ RL +ARA+ +I + D+ SA+D A + I
Sbjct: 152 KDRLG-DLAF------NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI 204
Query: 773 --LSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSS 817
L N + T ++ THN+ QA +D M G++ G++
Sbjct: 205 SDLKNKV--------TILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244
|
Length = 265 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 38/224 (16%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL-------NIIN 1290
AA+ +++F+++ G + IVG +G+GKS AL RL GG + D + +I
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89
Query: 1291 ------TPVRDLRGR-FAVVPQSPFLFEGSLRDNLDP-FHMNDDL-----------KIWS 1331
+R +RG A++ Q P +L+P F + + + + +
Sbjct: 90 LSEQSAAQMRHVRGADMAMIFQEPM-------TSLNPVFTVGEQIAESIRLHQGASREEA 142
Query: 1332 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
++E + ++V +T + S G RQ + +A AL VL DE T +D
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1392 -TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
A ILQ + E M VI I H + V + D +L++ G
Sbjct: 203 IQAQILQLIKVLQKEMS-MGVIFITHDMGVVAEIADRVLVMYQG 245
|
Length = 623 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--GSIAYVPQ 679
+ + ++L L G +A+IGE G GK++LL +++GE+ G++ S +I Y Q
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQ 389
|
Length = 530 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG--EMMLTHGSIHASG---------SIA 675
LN +S + G+L A++GE G+GK++LL+ + G + G I +G S
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82
Query: 676 YVPQVPWILSG--TIRDNILF 694
YV Q + S T+R+ + F
Sbjct: 83 YVEQQD-VHSPNLTVREALRF 102
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-05
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 52/224 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMMLTHGSIHASGSIA 675
NVV+ +S L G + ++GE GSGKS+ L+NS GE+ +H
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-QGEIWFDGQPLHNLNRRQ 356
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQS------------------YSETLKACTLDVD-I 716
+P I ++F DP S + TL A + I
Sbjct: 357 LLPVRHRI-------QVVF---QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406
Query: 717 SLM--VGGDMA----YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 770
++M VG D Y E SGGQR R+A+ARA+ + +LD+ S++D V
Sbjct: 407 AVMEEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462
Query: 771 WILS--NAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811
IL+ ++ H L + +H++ + A V+V+ +G+V
Sbjct: 463 QILALLKSLQQKHQL--AYLFISHDLHVVRALCHQVIVLRQGEV 504
|
Length = 529 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGK++LLN++ + G +H
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L+DI+ I G V ++G +G+GK+++L + L G I G ++ RD +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMN--DDLKI-WSVLE----------KCHVKEEVEAVG 1346
F V Q LF HM D++ +VL K V + +E V
Sbjct: 78 F--VFQHYALFR----------HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ 125
Query: 1347 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
L S GQ+Q + LARAL ++L LDE +DAQ
Sbjct: 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 676
+L +++ +P S+ ++G GSGKS+LL + + + I G + Y
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 677 ----------VPQVPWILSG-TIRDNILFG-KNY---DPQSYSETLKACTLDVDISLMVG 721
V Q P +I DNI + K++ + + + ++ C V + V
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV- 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ LSGGQ+ RL +ARA+ + ++D+ S +D ++ I ++
Sbjct: 144 --YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITEL 199
Query: 782 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823
+ ++ +HN Q ++ AD V + G++ GSS ++ S
Sbjct: 200 KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQKTRILCTH 792
SGGQR R+A+ARA+ ++ +LD+ SA+D V +L + H L + + +H
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL--SYLFISH 485
Query: 793 NVQAISA-ADMVVVMDKGQVKWIGSSADL 820
++ + A V+VM G++ G + +
Sbjct: 486 DLAVVRALCHRVIVMRDGKIVEQGPTEAV 514
|
Length = 534 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMM 662
WY Q+ L ++L +P+ + A+IG G GKS+ + + + GEM
Sbjct: 21 WY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75
Query: 663 LTHGSIHAS--------GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 713
+I +I V Q +I DN+ +G P+ + K +
Sbjct: 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG----PRIHGTKNKKKLQEI 131
Query: 714 VDISLMVGGDMAYIGE-------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 766
V+ SL D+A E + ++LSGGQ+ RL +ARA+ D+ ++D+ SA+D
Sbjct: 132 VEKSLK---DVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188
Query: 767 QVARWILSNAIMGPHMLQKTRILCTHNVQ 795
R I ++ + T ++ THN+Q
Sbjct: 189 VSTRKI--EELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
EEQ VL +SL + G +VA++G GSGKS+L+N ILG
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILG 55
|
Length = 648 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 67/226 (29%)
Query: 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGS------------ 673
V+L LP + A+ G G+GK+SL+N+I G LT G I +G
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISG---LTRPQKGRIVLNGRVLFDAEKGICLP 72
Query: 674 -----IAYVPQ----VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 723
I YV Q P +R N+ +G + I ++G
Sbjct: 73 PEKRRIGYVFQDARLFPHY---KVRGNLRYGMAKSMVAQFD----------KIVALLG-- 117
Query: 724 MAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------ 772
I E ++ LSGG++ R+A+ RA+ ++ ++D+ L+++D R +
Sbjct: 118 ---I-EPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173
Query: 773 LSNAIMGPHMLQKTRIL-CTHNVQAI-SAADMVVVMDKGQVKWIGS 816
L+ I IL +H++ I AD VVV+++G+VK G
Sbjct: 174 LAREI-------NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 1255 IVGRTGAGKSSILNALFRLT-PICG-----GQILVDGLNIINTPVRDLRGRFAVVPQSPF 1308
I GR+GAGK+S++NA+ LT P G G++L D I P + R V Q
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE--KRRIGYVFQDAR 86
Query: 1309 LF-----EGSLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSV 1360
LF G+LR + M D + V +G+E + S S
Sbjct: 87 LFPHYKVRGNLRYGMAKS-MVAQFDKI--------------VALLGIEPLLDRYPGSLSG 131
Query: 1361 GQRQLICLARALLKSSKVLCLDECTANVD 1389
G++Q + + RALL + ++L +DE A++D
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF-A 1301
++F ++ G + + G GAGK+++L L L + GQI +DG T R R RF A
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG----KTATRGDRSRFMA 85
Query: 1302 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE----EVEAVGL----ETFVKE 1353
+ P L+ +L ++L L K+ + VGL +T V++
Sbjct: 86 YLGHLP-----GLKADLSTL---ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQ 137
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1411
S GQ++ + LAR L + + LDE AN+D + +++ IS+ + G ++T
Sbjct: 138 ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK------- 785
LSGGQ+ R+A+ARA+ + + D+ SA+D R IL +L+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-------LLKDINRELGL 192
Query: 786 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSAD 819
T +L TH + + D V V+D G++ G+ ++
Sbjct: 193 TIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 24/200 (12%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSIHASGSIAYVPQ 679
L + L + +G +V ++GE G GKS+L GE++L ++ A Y
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD- 416
Query: 680 VPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
+ S D LF G++ + + L+ + + + GG
Sbjct: 417 ---LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGG-----FSTT 468
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LS GQ+ RLAL A I + D+ + D R+ + KT I+ +
Sbjct: 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528
Query: 792 HNVQAISAADMVVVMDKGQV 811
H+ Q AD ++ + G +
Sbjct: 529 HDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAY 676
E + +S + G +A++GE GSGKS SILG +L + H SGSI +
Sbjct: 19 EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG--LLPSPAAAHPSGSILF 74
|
Length = 534 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 34/221 (15%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG-- 672
LN +++ + K S+ A+IG G GKS+ L + I G ++ +I+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 724
I V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYG----PKIHGTKDKK-KLDEIVEQSLKKSALW 137
Query: 725 AYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ +K ++LSGGQ+ RL +AR + ++ ++D+ SA+D ++ + I+
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINL 196
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
T I+ THN+ QA +D G ++ S+ +L
Sbjct: 197 KE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 687 TIRDNILFGKNYDPQSYSETLK-ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
TI +I+FG P S + + A +VG D +Y+ LSGGQ+ R+ALA
Sbjct: 122 TIEKDIIFG----PVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVV 804
+ D + D+ + +D Q + IL + KT IL TH++ + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 805 VMDKGQV 811
G++
Sbjct: 237 FFKDGKI 243
|
Length = 305 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 35/226 (15%)
Query: 613 CSWYCNNEEEQNV---VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
C C +E +V VL+ VS + +G ++A++G GSGKS+LL+ +LG +
Sbjct: 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGL-----DTP 61
Query: 670 ASGSIAYVPQVPWILSGTIR---DNILFGKNYDPQSYSETLKACTLDVDISLMVGGD--- 723
SG + + Q LS + N G Y A +V + L++G
Sbjct: 62 TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE-NVAMPLLIGKKKPA 120
Query: 724 ---------MAYIG-EKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
+A +G E N LSGG+R R+A+ARA+ + + + D+ +DA+
Sbjct: 121 EINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
Query: 769 ARWILSNAIMGP-HMLQKTRIL-CTHNVQAISAADMVVVMDKGQVK 812
A I ++G + LQ T L TH++Q + M G++
Sbjct: 181 ADSIF--QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224
|
Length = 233 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
VLN VSL L G VA++G G GKS+L ++G + G++ G
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 673 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 718
SI+ V P+ V I+ +R + K SE L+A LD +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778
LSGGQ R+ LARA+ + +LD+ +S +D + ++
Sbjct: 147 KRPP----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR---- 192
Query: 779 GPHMLQKTR-------ILCTHNVQAISA-ADMVVVMDKGQV 811
+L+K + + TH+++ + V+VMD GQ+
Sbjct: 193 ---LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1278
Q L+ + +T Y P D++F + G +GIVG +G+GK+++LNAL RL P G
Sbjct: 4 QPLLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283
E +NVT R + + DI+F++ G +G G G+G++ ++N LF + GG+I +
Sbjct: 267 EVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
Query: 1284 DGLNI-INTPVRDLRGRFAVVPQS-------------------PFLFEGSLRDNLDPFHM 1323
+G +I +P+ ++ A + +S L +G + + FH
Sbjct: 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382
Query: 1324 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLD 1382
D+ + + + E + L+ I+ S G +Q + +++ L +V+ D
Sbjct: 383 VDEQRT--------AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
Query: 1383 ECTANVDAQTAS 1394
E T +D +
Sbjct: 435 EPTRGIDVGAKA 446
|
Length = 510 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 64/225 (28%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L V L + +G VA++G GSGKS+LL + G + G + G
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 673 ----SIAYVPQ---------------VPWILSGTIRDNILFGKNYDPQSYS-ETLKACTL 712
+ +V Q +P L G D ++ + L+A L
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA--------DSRAGAKALLEAVGL 136
Query: 713 DVDISLMVGGDMA-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 771
G + Y + LSGG++ R+ALARA D+ D+ +D
Sbjct: 137 --------GKRLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 772 ILS-----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
I N G T +L TH+ Q + D + + G++
Sbjct: 185 IADLLFALNRERG-----TTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTR 787
++LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I A G T+
Sbjct: 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG-----ITQ 194
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSA 818
++ TH V+ A A VV M+ G + G ++
Sbjct: 195 VIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 43/189 (22%)
Query: 641 AVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------------------IAYVPQ 679
A+IG G GKS+ L +I M S H +G+ I V Q
Sbjct: 69 AIIGPSGCGKSTFLRAI-NRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 680 VPWILSGTIRDNILFGKNY----DPQSYSE----TLKACTLDVDISLMVGGDMAYIGEKG 731
P +I DNI +G D + E +L+ L ++S + +
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRIL 789
+ LSGGQ+ RL +AR + +I +LD+ SA+D + I L + G + T ++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY----TIMI 236
Query: 790 CTHNVQAIS 798
THN+Q S
Sbjct: 237 VTHNMQQAS 245
|
Length = 286 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 676
+N +S+ + K ++ A+IG G GKS+ L SI M S + G I Y
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSI-NRMNDLIPSARSEGEILYEGLNILDSNI 95
Query: 677 -----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 723
V Q P +I +NI Y E K+ LD V+ SL
Sbjct: 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYA----GERRKS-VLDEIVEESLTKAAL 150
Query: 724 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA--- 776
+ ++ ++LSGGQ+ RL +AR + + +LD+ SA+D +SNA
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP------ISNAKIE 204
Query: 777 -IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 811
++ + + I+ THN+ QA+ +D G +
Sbjct: 205 ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241
|
Length = 268 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 37/226 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSI----- 668
VL+QVS+ P ++ +++G GSGK++ L ++ G+++L SI
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 669 --HASGSIAYVPQVPWILSGTIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGG 722
+ + Q P +I DN+L G K + + +A +V + V
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIM 778
++ + LSGGQ+ L LAR + ++ +LD+ SA+D ++ +I S A
Sbjct: 156 RLS---DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD- 211
Query: 779 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 823
+ T I+ THN+ QA +D + G++ G + L S
Sbjct: 212 -----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPVRDLR 1297
L++I+ ++ GT ++G +GAGK+++L+ L + + G+IL++G + ++ +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL----DKNFQ 78
Query: 1298 GRFAVVPQSPFLFEGS-LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1356
V Q +R+ L F L+ GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVREALR-FSAL--LR-----------------GL--------- 109
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTVITI 1412
SV QR+ + + L +L LDE T+ +D+Q A L+ S G ++
Sbjct: 110 --SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS---GQAILCT 164
Query: 1413 AHRISTVL--NMDEILILDHG 1431
H+ S + D +L+L G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-04
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---------VPWILSG 686
G ++ ++G G GK++ + + G + GS ++Y PQ V +L
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-EDLKVSYKPQYISPDYDGTVEDLLRS 424
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALA 745
IR +E +K L+ + E+ V LSGG+ R+A+A
Sbjct: 425 AIRSAFG-----SSYFKTEIVKPLNLE------------DLLERPVDELSGGELQRVAIA 467
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
A+ +D+Y+LD+ + +D + R I++ I
Sbjct: 468 AALSREADLYLLDEPSAYLDVE-QRIIVAKVI 498
|
Length = 591 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 18/245 (7%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
++ + L+ +SL +G ++ ++G GSGKS+L N I G + T G + +G ++ V
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS-V 89
Query: 678 PQVPWILSGTIR--DNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
+ LSG + +NI F + + +KA T + I G+ Y K
Sbjct: 90 IAISAGLSGQLTGIENIEFKMLCMGFKRKE----IKAMTPKI-IEFSELGEFIYQPVK-- 142
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
S G RA+L + + DI ++D+ LS D A+ L + I KT +H
Sbjct: 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFVSH 201
Query: 793 NV-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 851
N+ Q + ++ G++K G D+ + Y F N+F +++E R
Sbjct: 202 NLGQVRQFCTKIAWIEGGKLKDYGELDDV-LPKYEAF--LNDFKKKSKAEQKEFRNKLDE 258
Query: 852 ANKQI 856
+ I
Sbjct: 259 SRFVI 263
|
Length = 264 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-04
Identities = 92/375 (24%), Positives = 151/375 (40%), Gaps = 66/375 (17%)
Query: 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT----LLTKIVNAPVLFFDQ-- 992
S Y++V+ I MF S TL ++ G KV T L I+ + FFDQ
Sbjct: 869 SLYILVIAI-AMFIS-ETLKNYYNNVIGE-----KVEKTMKRRLFENILYQEISFFDQDK 921
Query: 993 -TPGGRILNRFSSDLYMIDDSLPFILNILL-ANFVGLLGIAVVLS-YVQVFFLLLLVPFW 1049
PG + + D++++ L + NI++ +F+ L +++V+S Y +L +
Sbjct: 922 HAPG-LLSAHINRDVHLLKTGL--VNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTY 978
Query: 1050 FIYSKLQFFYR-----STSRELRRLDSVSRSPIYASFTETLNGSS-----------TIRA 1093
FI+ ++ F R + E + ++ Y S E S T+
Sbjct: 979 FIFMRV-FAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037
Query: 1094 FKSEDYFMAKFKEHVVLYQRTSYSELT---ASLW-LSLRLQLLAAFIISFIATM-AVIGS 1148
+ EDYF E + Y T + LW S QL FI SF + +
Sbjct: 1038 YGLEDYF-CNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQL---FINSFAYWFGSFLIR 1093
Query: 1149 RGNLPATFSTPGLVGLAL--SYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM------ 1200
RG + L SYA ++SL G ++E +S E+ +
Sbjct: 1094 RGTILVDDFMKSLFTFLFTGSYAGKLMSLKG-------DSENAKLSFEKYYPLIIRKSNI 1146
Query: 1201 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGR 1258
DV G + +G IE +V RY +P++P D+ F+ + IVG
Sbjct: 1147 DVRDN---GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI-YKDLTFSCDSKKTTAIVGE 1202
Query: 1259 TGAGKSSILNALFRL 1273
TG+GKS++++ L R
Sbjct: 1203 TGSGKSTVMSLLMRF 1217
|
Length = 1466 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 32/205 (15%)
Query: 1250 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1309
G + +VG GAGKS++L + +T G I G + +L A + Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQ---- 79
Query: 1310 FEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAV-------GLETFVKESGISFSVG 1361
PF M +W L K E + L+ + S S G
Sbjct: 80 ------QQTPPFAM----PVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 1362 QRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIA 1413
+ Q + LA +L+ + ++L LDE ++D S L +S+ C+ G+ ++ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 1414 HRIS-TVLNMDEILILDHGHLPHCG 1437
H ++ T+ + +L G L G
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASG 214
|
Length = 248 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 1254 GIVGRTGAGKSSILNALFR--LTPI------------CGGQILVDGLNIINTPVRDLRGR 1299
G++G+TGAGKSS+ NALF + + Q DGL +++ P RGR
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERGR 60
Query: 1300 F 1300
Sbjct: 61 R 61
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-04
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 31/202 (15%)
Query: 1250 GTQVGIVGRTGAGKSSILNALF-RLTP--ICGGQILVDGLNIINTPVR--------DLRG 1298
GT ++G +GAGK+++LN L R+T I GG LV+G + ++ R DL
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHL 848
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETF----VKE 1353
+ V +S F LR P + S EK EEV + + +E++ V
Sbjct: 849 PTSTVRES-LRFSAYLRQ---PKSV-------SKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 1354 SGISFSVGQRQLICLARALLKSSKVLC-LDECTANVDAQTA-SILQNAISSECKGMTVIT 1411
G +V QR+ + + L+ K+L LDE T+ +D+QTA SI + G ++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957
Query: 1412 IAHRISTVL--NMDEILILDHG 1431
H+ S +L D +L+L G
Sbjct: 958 TIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 51/244 (20%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1278
+ L+ ++ Y P D++F + G +GIVG +G+GK+++L + RLTP G
Sbjct: 4 KPLLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 1279 -------GQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330
D + R L R + V Q+P RD L
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP-------RDGLRM---------- 104
Query: 1331 SVLEKCHVKEEVEAVG--------------LE------TFVKESGISFSVGQRQLICLAR 1370
V ++ E + A+G LE + + +FS G +Q + +AR
Sbjct: 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164
Query: 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTV-LNMDEILI 1427
L+ +++ +DE T +D + L + + + G+ V+ + H ++ L D +++
Sbjct: 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMV 224
Query: 1428 LDHG 1431
+ G
Sbjct: 225 MKQG 228
|
Length = 258 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGK++LL I G + G++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 28/196 (14%)
Query: 1254 GIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFE 1311
G+VG G GKS++ L L G +L G L+ + LR + A V Q P
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP---- 86
Query: 1312 GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE---------VEAVGLETFVKESGISFSVGQ 1362
F+ + D I L V E + V + F + S GQ
Sbjct: 87 -----EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQ 141
Query: 1363 RQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRIST 1418
++ + +A AL+ ++ L LDE TA +D Q +I++ ++ +G VI +H I
Sbjct: 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDL 198
Query: 1419 VLNM-DEILILDHGHL 1433
+ + D + +L G +
Sbjct: 199 IYEISDAVYVLRQGQI 214
|
Length = 271 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMMLTHGSIHASG------- 672
L +++ + KG + A++G G+GKS+L LN IL G ++ I S
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 673 -SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
S+ V Q P + S ++ ++ FG + VD +L G + ++ +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG----AVNLKLPEDEVRKRVDNALKRTG-IEHLKD 136
Query: 730 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
K + LS GQ+ R+A+A + + +LD+ + +D I+ + L T I
Sbjct: 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196
Query: 789 LCTHNVQAISA-ADMVVVMDKGQV 811
+ TH++ + D V VM +G+V
Sbjct: 197 IATHDIDIVPLYCDNVFVMKEGRV 220
|
Length = 283 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1252 QVGIVGRTGAGKSSILNALFR 1272
+V +VGR GKS+++NAL
Sbjct: 1 RVALVGRPNVGKSTLINALTG 21
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 49/228 (21%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG--GQILVDG--LNIINTPVRD- 1295
D++F + G +GIVG +G+GKS++L L RL P G I+ G L + +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 1296 ---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF-- 1350
+R + V Q+P RD L M V ++ E + A+G +
Sbjct: 81 RRLMRTEWGFVHQNP-------RDGL---RMR-------VSAGANIGERLMAIGARHYGN 123
Query: 1351 --------VKESGI----------SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
++E I +FS G +Q + +AR L+ +++ +DE T +D
Sbjct: 124 IRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183
Query: 1393 ASILQNAISSECK--GMTVITIAHRISTV-LNMDEILILDHGHLPHCG 1437
+ L + + + G+ VI + H + L +L++ G + G
Sbjct: 184 QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 36/200 (18%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL--------GEMMLTHGSIHA-- 670
E + +L V L + +G +A+IGE GSGKS+LL +IL GE+ L +H
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMD 78
Query: 671 --------SGSIAYVPQVPWILSGTI--RDNI-----LFGKNYDPQSYSETLKACTLDVD 715
+ + +V Q ++L T+ +N+ L G++ QS +
Sbjct: 79 EEARAKLRAKHVGFVFQ-SFMLIPTLNALENVELPALLRGES-SRQSRNGAKALLE---- 132
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
L +G + ++ + LSGG++ R+ALARA D+ D+ +D Q I
Sbjct: 133 -QLGLGKRLDHLPAQ---LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 776 AIMGPHMLQKTRILCTHNVQ 795
T IL TH++Q
Sbjct: 189 LFSLNREHGTTLILVTHDLQ 208
|
Length = 228 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 49/181 (27%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 693
+GSL + G GSGKS++L++I L G +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIG-----------------------LALGGA-QSATR 53
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV----Y 749
+ ++ LSGG++ ALA +
Sbjct: 54 RRSGVKAGCIV-----AAVSAELIFTRLQ-----------LSGGEKELSALALILALASL 97
Query: 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNVQAISAADMVVVMD 807
+Y+LD++ +D + + L+ AI+ L K I+ TH + AD ++ +
Sbjct: 98 KPRPLYILDEIDRGLDPRDGQ-ALAEAIL--EHLVKGAQVIVITHLPELAELADKLIHIK 154
Query: 808 K 808
K
Sbjct: 155 K 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 31/218 (14%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSILGEMMLTHGSIHASG----------- 672
L +++ + + + A+IG G GKS+ L N + ++ G + G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 673 --SIAYVPQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 723
++ V Q P + +I +NI + KN D + + C V + V
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEE--ALVVDCLQKVGLFEEVKDK 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ + + LSGGQ+ RL +ARA+ + +LD+ SA+D + I H L
Sbjct: 136 LK---QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 784 QKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ I+ THN+ Q AD G++ G S +
Sbjct: 193 --SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 50/184 (27%)
Query: 615 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 674
WY + +N+ L+ + + + A+IG G GKS+ + + L M+ S+ +G I
Sbjct: 33 WYGEDHALKNINLD-----IHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKI 86
Query: 675 AY---------------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713
Y V Q P +I DN+ +G P+ + K TLD
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG----PKIHGIKDKK-TLD 141
Query: 714 --VDISLMVGG----------DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 761
V+ SL D AY LSGGQ+ RL +AR + D+ ++D+
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAY------GLSGGQQQRLCIARCLAIEPDVILMDEPT 195
Query: 762 SAVD 765
SA+D
Sbjct: 196 SALD 199
|
Length = 271 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRI- 788
LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I L +T I
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII--------RELAETGIT 193
Query: 789 --LCTHNVQ-AISAADMVVVMDKGQV 811
+ TH V+ A A VV M+ G +
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 20/219 (9%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SI 674
++++++ + + A +G G+GK++ L+ + G + T G++ G S+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005
Query: 675 AYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733
PQ + T+ ++ILF +S+ E L+++ L G E+ +
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA----QLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
LSGG + +L++A A + + +LD+ S VD R I ++ + +T I+ TH+
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD--LLLKYRSGRTIIMSTHH 1119
Query: 794 V-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 831
+ +A D + ++ +G++ G+ L +GF+ T
Sbjct: 1120 MDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLT 1158
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 51/227 (22%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----H--ASGSIAYVPQVPWI 683
+S L +G +A+IGE GSGKS+L + G + T G + H G +Y Q
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ---- 87
Query: 684 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG-EKGVN--------- 733
R ++F DP + + + +D L + D+ EK +
Sbjct: 88 -----RIRMIF---QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 734 ----------LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
L+ GQ+ RL LARA+ + + D+ L+++D + R L N ++ L
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM-RSQLINLML---EL 195
Query: 784 QKTR----ILCTHNV---QAISAADMVVVMDKGQVKWIGSSADLAVS 823
Q+ + I T ++ + IS D V+VM +G+V GS+AD+ S
Sbjct: 196 QEKQGISYIYVTQHLGMMKHIS--DQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668
VL VSL + G VA+ G G+GKS+LL S+ + G I
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
VG D G+ V+LSGGQ+ R+++ARA+ ++ + D+ SA+D ++ +L IM
Sbjct: 139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQ 196
Query: 780 PHMLQ-KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ KT ++ TH + A + V+ + +G+++ G+ L
Sbjct: 197 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 628 NQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
VS L G ++ ++GE GSGKS+LL + G + HG+
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 44/188 (23%)
Query: 1216 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLT 1274
D P +I F + + Y P P ++NF I+ +++ +VG G GKS+IL + L
Sbjct: 502 DRPGPPIISFSDASFGY-PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560
Query: 1275 PICG-------------GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF 1321
P G Q VDGL++ + P+ + F VP E LR +L F
Sbjct: 561 PSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP------EQKLRAHLGSF 614
Query: 1322 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+ +L + + + S GQ+ + A+ K +L L
Sbjct: 615 GVTGNLAL-----------------------QPMYTLSGGQKSRVAFAKITFKKPHILLL 651
Query: 1382 DECTANVD 1389
DE + ++D
Sbjct: 652 DEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 1242 DINFTIEGGTQV-GIVGRTGAGKSSILNA----LFRLTPICGGQILVD 1284
DI+ + + IVG GAGKSSIL+A L+ TP G L D
Sbjct: 16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDD 63
|
Length = 908 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
L+AV+GE +GKS+LLN++LGE +L G + I +
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVL 40
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682
+ L +S+ ++ + G G GKSSLL I G M + G+I+ P+
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 683 I----------LSGTIRDNILF-GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
L T+ +N+ F + Y+ A TL I D+ + EK
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDL--LDEKC 121
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
+LS G + +A+AR + SD+++LD+V + + + R +L+N I
Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE-NRDLLNNLI 166
|
Length = 195 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.001
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 26/132 (19%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS---GTIRDNI 692
+G ++ ++G G GK++ + G + G + I+Y PQ +I GT+ D +
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ--YIKPDYDGTVEDLL 421
Query: 693 -----LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALAR 746
G +Y SE +K L+ L+ +K V LSGG+ R+A+A
Sbjct: 422 RSITDDLGSSY---YKSEIIKPLQLE---RLL---------DKNVKDLSGGELQRVAIAA 466
Query: 747 AVYHGSDIYMLD 758
+ +D+Y+LD
Sbjct: 467 CLSRDADLYLLD 478
|
Length = 590 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 32/162 (19%)
Query: 630 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------------IA 675
VS + G ++ + G VG+G++ L ++ G + G I G IA
Sbjct: 278 VSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337
Query: 676 YVP----QVPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGD 723
YVP +L +I +NI D + + + I
Sbjct: 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI------K 391
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ LSGG + ++ LAR + + +LD+ +D
Sbjct: 392 TPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
|
Length = 500 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 32/164 (19%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGSIHA-S 671
+L+ +SL P G + +IG GSGKS+LL +L L S A +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84
Query: 672 GSIAYVP-QVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISLMVGG 722
+AY+P Q+P T+R+ + G+ + + +A +L VG
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL-------VG- 136
Query: 723 DMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
+ + + V+ LSGG+R R +A V S +LD+ SA+D
Sbjct: 137 -LKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 42/211 (19%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASGSIAY 676
++ V N V+L + +G++ A+IG G GK++ L +I LT G I G Y
Sbjct: 16 DKQAVKN-VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 677 VPQVPWIL----------------SGTIRDNILFG------KNYDP--QSYSETLKACTL 712
P+V + + ++ DN++ G ++ D + +L+ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 713 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQVARW 771
++ + LSGGQ+ RL +ARA+ +I ++D+ SA+D A AR
Sbjct: 135 WDEVK-------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTAR- 186
Query: 772 ILSNAIMGPHMLQKTRILCTHNV-QAISAAD 801
+M T I+ THN+ QA +D
Sbjct: 187 --IEDLMTDLKKVTTIIIVTHNMHQAARVSD 215
|
Length = 252 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 671
V+ VSL + G +V ++G G+GK++ ++G + G+I A
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 672 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I Y+PQ I ++ DN++ +E + D LM + ++ +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE----DRANELMEEFHIEHLRDS 133
Query: 731 -GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765
G +LSGG+R R+ +ARA+ +LD+ + VD
Sbjct: 134 MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++ +T Y + A+ + + G G++G GAGK++ L T + G
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKE 1340
V G +I+ T + D+ PQ D +D + L +++ L +E
Sbjct: 1997 TVAGKSIL-TNISDVHQNMGYCPQF---------DAIDDLLTGREHLYLYARLRGVPAEE 2046
Query: 1341 -------EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
++++GL + ++S G ++ + A AL+ ++ LDE T +D Q
Sbjct: 2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106
Query: 1394 SILQNAISSECK-GMTVITIAHRI 1416
+L N I S + G V+ +H +
Sbjct: 2107 RMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 34/216 (15%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPV--RD 1295
L +N T++ G I+G G+GKS++ + + G IL G +++ R
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 1296 LRGRFAVVPQSP----------FL-------FEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
G F + Q P FL + LD LK + L +
Sbjct: 76 RAGLF-LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK--AKLALLGM 132
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA--NVDA-QTASI 1395
EE L V E FS G+++ + + L K+ LDE + ++DA + +
Sbjct: 133 DEEF----LNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHG 1431
N + + +IT R+ + D + +L G
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG----------GQILVDGLN 1287
A L D++ IE G ++GR GAGKS++L AL + G G + ++G
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKAL--AGDLTGGGAPRGARVTGDVTLNGEP 72
Query: 1288 IINTPVRDLRGRFAVVPQS 1306
+ L AV+PQ+
Sbjct: 73 LAAIDAPRLARLRAVLPQA 91
|
Length = 272 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILC 790
SGGQR R+A+ARA+ D+ + D+ +SA+D V +L N +M LQ+ + +
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL-NLMMD---LQQELGLSYVFI 211
Query: 791 THN---VQAISAADMVVVMDKGQVKWIGSSADL 820
+H+ V+ I AD V+VM G+ G+ +
Sbjct: 212 SHDLSVVEHI--ADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASGS------ 673
++ +LN V+ G ++AV+G GSGKS+LLN++ G + + G+I A+
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQI 138
Query: 674 ---IAYVPQ----VPWILSGTIRDNILFGKNYD-PQSYSETLKACTLDVDISL--MVGGD 723
+V Q P + T+R+ ++F P+S ++ K + IS + +
Sbjct: 139 LKRTGFVTQDDILYPHL---TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 724 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
IG + +SGG+R R+++A + + +LD+ S +DA A ++ +
Sbjct: 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG---SL 252
Query: 783 LQKTRILCTHNVQAISAA----DMVVVMDKGQVKWIGSSAD 819
QK + + T Q S D V+V+ +G+ + G +D
Sbjct: 253 AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293
|
Length = 659 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 37/173 (21%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1296
L + ++ G + ++G +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 1297 RGR--------FAVVP--------QSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
R + F ++P + P L G S R + + K
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----------------RNGAK 128
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
+E +GL + S G++Q + LARA VL DE T N+D QT
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE--MMLTHGSI 668
+L V+L + KG + A++G GSGKS+L +I G +T G+I
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 50/190 (26%), Positives = 70/190 (36%), Gaps = 61/190 (32%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-----------GEMMLTHGSIHASGSIA 675
L + + +P G L V G GSGKSSL+N L E H I I
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 676 YVPQV------------PWILSG---TIRDNILF-----GKNYDPQSYSETLK----ACT 711
V + P +G IR+ LF GK Y+ ++ K A
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRE--LFCEVCKGKRYNRETLEVRYKGKSIADV 128
Query: 712 LDVDI------------------SLM-VGGDMAYIGEKGVNLSGG--QRARLA--LARAV 748
LD+ + +L VG +G+ LSGG QR +LA L++
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 749 YHGSDIYMLD 758
G +Y+LD
Sbjct: 189 -TGKTLYILD 197
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 56/293 (19%)
Query: 537 TCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGL 596
T L L L+S + + P L+ A ++ +L + + YK E
Sbjct: 271 TLLFLRTPLLSAVGALP----TLLSAQVAFNKLNKL-ALAPYKAEFP--------RPQAF 317
Query: 597 SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 656
++ + + +++ T ++ ++ + ++L + +G L+ +IG GSGKS+L
Sbjct: 318 PDWQT----LELRNVTFAY-----QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--- 365
Query: 657 ILGEMMLTHGSIHASGSIAYVPQVP----------WILSGTIRDNILF-------GKNYD 699
M+LT SG I + P + S D LF GK +
Sbjct: 366 ---AMLLTGLYQPQSGEI-LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPAN 421
Query: 700 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759
P + L+ + + L G ++ + LS GQ+ RLAL A+ DI +LD+
Sbjct: 422 PALVEKWLERLKMAHKLEL-EDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDE 475
Query: 760 VLSAVDAQVARWILSNAIMGPHMLQ--KTRILCTHNVQAISAADMVVVMDKGQ 810
+ D R ++ P + + KT +H+ AD ++ M GQ
Sbjct: 476 WAADQDPHFRREFYQ--VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526
|
Length = 547 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV----- 680
+L VS+ + + + A+IG G GKS+ L L M + G + + Q
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESEVRVEGRVEFFNQNIYERR 80
Query: 681 ----------------PWILSGTIRDNILFGKN---YDPQ-SYSETLKACTLDVDISLMV 720
P + ++ DN+ +G + P+ + +++ D D+ +
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI 140
Query: 721 GGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
I + ++LSGGQ+ RL +ARA+ + ++D+ +D +A + + I
Sbjct: 141 KHK---IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP-IASMKVESLIQSL 196
Query: 781 HMLQK-TRILCTHNVQAIS 798
+ + T ++ +HN+ +S
Sbjct: 197 RLRSELTMVIVSHNLHQVS 215
|
Length = 261 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1445 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-258 Score=2448.89 Aligned_cols=1221 Identities=42% Similarity=0.698 Sum_probs=1123.2
Q ss_pred CCCCCCCCh--hHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhH
Q 000522 202 TDSGNNQSY--WDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGY 279 (1445)
Q Consensus 202 ~~~e~~~~~--~sr~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~ 279 (1445)
+.|.+.++. +|+++|||++|++++|||++|+.+|+|+++++++++.+.++|++.|+++.++++++|+++++++++|+|
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 345555555 999999999999999999999999999999999999999999999999874434678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 280 PYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 358 (1445)
Q Consensus 280 ~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~i 358 (1445)
+++..++++.+.+...|++|.+++.++++++++ .+.+.||+++++++++.++++++.++|+|...++|+|+|+++.++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999884 6678899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000522 359 YQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWI 438 (1445)
Q Consensus 359 y~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~~~~~~~~~ 438 (1445)
|+|+|+++...+++.+.|+++|+|++|++|+.++..++|.+|.+|+|+++++|+||.++|+++++|++++++++|+|.++
T Consensus 282 Y~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 282 YRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred HHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 439 ANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLF 518 (1445)
Q Consensus 439 ~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1445)
+++++++|++.|+.+|+|++.|+|+|+|||+||||+||+.|.++|++.|++|++.++|..++.+++.+++.+.|+++.++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccCCCc
Q 000522 519 TFGLFA-LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS 597 (1445)
Q Consensus 519 ~f~~~~-~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~~~ 597 (1445)
+|++|+ ..++.++++++|+++++|++++.|+..+|+.+..++++.+|++|+++||..+|.++..... .+.
T Consensus 442 tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~--~~~------- 512 (1381)
T KOG0054|consen 442 TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER--SPD------- 512 (1381)
T ss_pred HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc--CCC-------
Confidence 999999 7788999999999999999999999999999999999999999999999999876632110 011
Q ss_pred cCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcCeEEEE
Q 000522 598 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677 (1445)
Q Consensus 598 ~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~ 677 (1445)
...+.+++++|++|+|++.++++ .|+||||+|++|++++|||++||||||||++|+||+++.+|+|.++|.+|||
T Consensus 513 --~~~~~~i~i~~~sfsW~~~~~~~---tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv 587 (1381)
T KOG0054|consen 513 --EAGENAIEIKNGSFSWDSESPEP---TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYV 587 (1381)
T ss_pred --CCCCceEEEeeeeEecCCCCCcc---cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEe
Confidence 23556799999999999754434 4999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEE
Q 000522 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757 (1445)
Q Consensus 678 ~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illl 757 (1445)
||+|||+||||||||+||++||++||++|+++|+|++|++.+|.||+|+|||+|.||||||||||+||||+|+|+|||+|
T Consensus 588 ~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLL 667 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLL 667 (1381)
T ss_pred ccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhccccCcccccccchh
Q 000522 758 DDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 837 (1445)
Q Consensus 758 De~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 837 (1445)
|||+||||+||++|||++|+.| .+++||||+|||+++++++||+|++|+||+|.++|+|+|+++.+..+.++..+.+.+
T Consensus 668 DDplSAVDahvg~~if~~ci~~-~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~ 746 (1381)
T KOG0054|consen 668 DDPLSAVDAHVGKHIFEECIRG-LLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESE 746 (1381)
T ss_pred cCcchhhhHhhhHHHHHHHHHh-hhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchh
Confidence 9999999999999999999977 889999999999999999999999999999999999999997666555432111111
Q ss_pred hhhh--hhhhhccccc------hhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhh-hhHHHHHHHHHHH
Q 000522 838 LHMQ--KQEMRTNASS------ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF-SGWFITLVICLSA 908 (1445)
Q Consensus 838 ~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~-~g~~~~~~~~~~~ 908 (1445)
.... ....+..... ........++......++..+..++|+++.|.++|++|+.|+++ .|+....+++++.
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~ 826 (1381)
T KOG0054|consen 747 QEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLF 826 (1381)
T ss_pred hccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1000 0000000000 00000000111111112245566778889999999999999998 5666667677888
Q ss_pred HHHHHHHhhhhhHhhhhhcccCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 000522 909 ILMQASRNGNDLWLSYWVDTTGSSQTK-YSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 987 (1445)
Q Consensus 909 ~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~ 987 (1445)
+..+++..+.++|+++|++........ .+..+|+++|++++++..++.+++++.+..++.+++++||++|+++++|+||
T Consensus 827 v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm 906 (1381)
T KOG0054|consen 827 VLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPM 906 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 899999999999999999875332221 4677899999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 988 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1067 (1445)
Q Consensus 988 ~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~ 1067 (1445)
+|||+||+|||+||||+|++.+|+.+|..+..++.+++.++++++++++..|+++++++|+.++|++++++|++++||++
T Consensus 907 ~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLk 986 (1381)
T KOG0054|consen 907 SFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELK 986 (1381)
T ss_pred hhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000522 1068 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG 1147 (1445)
Q Consensus 1068 ~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~ 1147 (1445)
|+++.+|||+|+||+|+++|+.|||||+.|++|.+++.+++|.+++++|....++||+++|+|+++++++.++++++++.
T Consensus 987 RLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~ 1066 (1381)
T KOG0054|consen 987 RLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL 1066 (1381)
T ss_pred HhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888864
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--cccCCCCCCCCCCCccEEE
Q 000522 1148 SRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE--LCGYQSLSPDWPFQGLIEF 1225 (1445)
Q Consensus 1148 ~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~--~~~~~~~~~~wp~~g~I~f 1225 (1445)
.. +..++|.+|++++|++++++.++|++++.+++|+.|+||||+.+|.++|+|. ..+...||++||.+|+|+|
T Consensus 1067 ~~-----~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f 1141 (1381)
T KOG0054|consen 1067 PS-----GLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEF 1141 (1381)
T ss_pred cC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEE
Confidence 22 1146999999999999999999999999999999999999999999998883 1222338899999999999
Q ss_pred EEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcC
Q 000522 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1445)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1445)
+|++++|+|+.|+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++++++||+++++|||
T Consensus 1142 ~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1142 EDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQ 1221 (1381)
T ss_pred EEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000522 1306 SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383 (1445)
Q Consensus 1306 dp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDE 1383 (1445)
||+||+||+|+||||+++++|++||+|||+|+|+++++++ |||++|.|+|.|||.||||++||||||||++|||+|||
T Consensus 1222 dPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDE 1301 (1381)
T KOG0054|consen 1222 DPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDE 1301 (1381)
T ss_pred CCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEec
Confidence 9999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1384 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1384 aTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||++|++||..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|+++
T Consensus 1302 ATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1302 ATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred ccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999876
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-208 Score=2117.34 Aligned_cols=1390 Identities=31% Similarity=0.512 Sum_probs=1182.7
Q ss_pred cccchhhHHHHHhhhhHHHH-HHhhhc-ccccCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-c
Q 000522 17 FSKCFDDMILDFATNMVTIF-IILIIG-ITQRSPR-QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVS-Y 92 (1445)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 92 (1445)
+.+||.+..+..+++.++.+ ....+- ..++.++ ....+.+..|++...++++ ++++.+ +...|..+....+ +
T Consensus 23 ~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~ 98 (1522)
T TIGR00957 23 FTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTALGFLLWI---VCWADL-FYSFWERSHGRAPAP 98 (1522)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcchHHHHHHHHHHHHHH---HHHHHH-HHHHHhccccccccc
Confidence 55999998887777666655 222111 1122222 3445667778776655543 333222 2333333222222 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhHHhhhhhhhh----hhHHHHHHHHHHHHHH
Q 000522 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLK----CLKEICLVLLDIMFGI 168 (1445)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~rt~~~~~~~~~----~~~~~~~~~~~~~~~~ 168 (1445)
.+++++++.++++++++++++.||.|+.|||.++.+||++++++|++++||+|....... .. ....+++.++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPF-RDTTFYIYFALVL 177 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccce-ehhhHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999987532110 11 1223334444444
Q ss_pred HHHHHHh-hcccCcccccccccccCCCCCcCCCCCCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhH
Q 000522 169 SINIIRV-KRASSRRSSIEESLLSVDGDVEEDCNTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPST 247 (1445)
Q Consensus 169 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~sr~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~ 247 (1445)
+.++.+. .++++ .+.+.. ....++||+++|++||++|||+||++++|||++|+.+|||+++++++++.
T Consensus 178 ~~~~~~~~~~~~~--------~~~~~~---~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~ 246 (1522)
T TIGR00957 178 SQLVLSCFSDKSP--------LFSETN---HDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEM 246 (1522)
T ss_pred HHHHHHhhcCCCC--------cccccc---ccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHH
Confidence 4433332 22222 111100 01246799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc---------------------------------------CCCCchHHHHHHHHHhHhHHHHHHHH
Q 000522 248 CHSKLLSCWQAQRSC---------------------------------------NCTNPSLVRAICCAYGYPYICLGLLK 288 (1445)
Q Consensus 248 ~~~~~~~~w~~~~~~---------------------------------------~~~~~~l~~~l~~~~~~~~~~~~l~~ 288 (1445)
+.++|++.|+++.++ +.++++|+++++++|++.++..++++
T Consensus 247 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~ 326 (1522)
T TIGR00957 247 VVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFK 326 (1522)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHH
Confidence 999999999875310 11347899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000522 289 VVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRL 367 (1445)
Q Consensus 289 l~~~~~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~ 367 (1445)
++.+++.+++|++++.+++++.++ .+.+.||++++++++++++.+++.++|.|...+++.++|++|+..||+|+|+++.
T Consensus 327 l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~ 406 (1522)
T TIGR00957 327 AIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITN 406 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999763 3455689999999999999999999999999999999999999999999999999
Q ss_pred cccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 368 AERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATE 447 (1445)
Q Consensus 368 ~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (1445)
..+++.+.|+++|+|++|++++..+...+|.+|..|++++++++++|.++|+++++|++++++++|++.++++++++.++
T Consensus 407 ~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 486 (1522)
T TIGR00957 407 SARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQV 486 (1522)
T ss_pred hhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 000522 448 KMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALM- 526 (1445)
Q Consensus 448 ~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~- 526 (1445)
++++.+|+|++.++|+++|||+||+||||+.+.+++++.|++|++..++..+...+..+.+...|.++.+++|++|.+.
T Consensus 487 ~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 566 (1522)
T TIGR00957 487 AHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVD 566 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999888888888888888889999999876
Q ss_pred -CCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccCCCccCCCCCce
Q 000522 527 -GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMA 605 (1445)
Q Consensus 527 -~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (1445)
++.++++.+|+++++++++..|+..+|..++.+.++++|++||++||+.++.++..... ... .......
T Consensus 567 ~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--~~~--------~~~~~~~ 636 (1522)
T TIGR00957 567 ENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER--RTI--------KPGEGNS 636 (1522)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc--ccc--------CCCCCCc
Confidence 46799999999999999999999999999999999999999999999876543211000 000 0011236
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcCeEEEEcCCCCCCC
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~p~l~~ 685 (1445)
++++|++|+|+.. + +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+||||+|+||+++
T Consensus 637 i~~~~~~~~~~~~-~---~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~ 712 (1522)
T TIGR00957 637 ITVHNATFTWARD-L---PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN 712 (1522)
T ss_pred EEEEEeEEEcCCC-C---CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccC
Confidence 9999999999742 1 24599999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcC
Q 000522 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765 (1445)
Q Consensus 686 ~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD 765 (1445)
+||||||.||.++|+++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++|+|++||||||+||
T Consensus 713 ~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 713 DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC-cccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhccccCcccccccchhh-----h
Q 000522 766 AQVARWILSNAIMG-PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL-----H 839 (1445)
Q Consensus 766 ~~~~~~i~~~~~~~-~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~ 839 (1445)
+++++++++.++.. .+.+++|+|+|||+++.++.||+|++|++|+++++|+++++.++.+.+.....+..... +
T Consensus 793 ~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 872 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLE 872 (1522)
T ss_pred HHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccc
Confidence 99999999986521 15678999999999999999999999999999999999999865444332211000000 0
Q ss_pred hh------hhhhhc-------cc----cchhhh------h--hh---h---hc--ccccCCchhhHHHHHHHHhcCccch
Q 000522 840 MQ------KQEMRT-------NA----SSANKQ------I--LL---Q---EK--DVVSVSDDAQEIIEVEQRKEGRVEL 886 (1445)
Q Consensus 840 ~~------~~~~~~-------~~----~~~~~~------~--~~---~---~~--~~~~~~~~~~~~~~~e~~~~g~v~~ 886 (1445)
.. .+..+. .. ...... . .. . .. +.....+...+..++|.++.|.+++
T Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 952 (1522)
T TIGR00957 873 DSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVEL 952 (1522)
T ss_pred ccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccH
Confidence 00 000000 00 000000 0 00 0 00 0000000112344567778899999
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 887 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFG 966 (1445)
Q Consensus 887 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~ 966 (1445)
++|++|+++.|+...++++++.++.+++..++++|+++|++............+|+++|++++++..++.++..+++.+.
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~ 1032 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIG 1032 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877766667777778888899999999997532111223345678899999999998888888888999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 000522 967 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1046 (1445)
Q Consensus 967 ~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1046 (1445)
+.++++++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..++.+++.++++++..|+++++++
T Consensus 1033 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~ 1112 (1522)
T TIGR00957 1033 GIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIP 1112 (1522)
T ss_pred HHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888889999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000522 1047 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1126 (1445)
Q Consensus 1047 pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1126 (1445)
|++++++.++++|.+++|++++++.++++|+++++.|+++|+.|||+||+|++|.+++.+..|.++++.+.....++|++
T Consensus 1113 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 (1522)
T TIGR00957 1113 PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLA 1192 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 000522 1127 LRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1206 (1445)
Q Consensus 1127 ~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~ 1206 (1445)
.++++++.+++.+++.+.+.. .+..++|.+|++++|+..+..++.++++.++++|+.++|++|+.+|.+.++|+
T Consensus 1193 ~~~~~~~~~~~~~~~~~~v~~------~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~ 1266 (1522)
T TIGR00957 1193 VRLECVGNCIVLFAALFAVIS------RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEA 1266 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999998876555554444421 13457899999999999999999999999999999999999999999888765
Q ss_pred cc--cCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Q 000522 1207 LC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1445)
Q Consensus 1207 ~~--~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1284 (1445)
.. +...++++||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+|+|++|+|.||
T Consensus 1267 ~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~Id 1346 (1522)
T TIGR00957 1267 PWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIID 1346 (1522)
T ss_pred cccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEEC
Confidence 31 2234556799999999999999998877789999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhH
Q 000522 1285 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1362 (1445)
Q Consensus 1285 G~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQ 1362 (1445)
|+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+|+++|+++++++++ ||||.++|+|.+|||||
T Consensus 1347 G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1347 GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||+||||||+|+|+|||||||||+||.+||+.||++|++.|++||||+||||++++++||||+|||+|+|+|+|+|+++
T Consensus 1427 rQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1427 RQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-208 Score=2111.16 Aligned_cols=1412 Identities=31% Similarity=0.518 Sum_probs=1169.0
Q ss_pred CccCCCCcc-ccccc------ccccchhhHHHHHhhhhHHHH-HHhhh-cccc-cCCcccchhhHHHHHHHHHHHHHHHH
Q 000522 2 DFICPNSPF-VWDGS------TFSKCFDDMILDFATNMVTIF-IILII-GITQ-RSPRQNQRINLMEKVFLHILPLVGAC 71 (1445)
Q Consensus 2 ~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~ 71 (1445)
+-+|+.... +|.+. .+.+||++.++..+++.+..+ ..+.+ -.++ .....+..+..+.|..+.++++..++
T Consensus 7 ~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1622)
T PLN03130 7 DWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTA 86 (1622)
T ss_pred hhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHH
Confidence 347964332 35553 466999995555444444433 11111 1111 12222233356666666555544333
Q ss_pred HHHHHHHHH---HHHhhc-CccccchH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhH
Q 000522 72 LSSVDVILL---LKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLV 143 (1445)
Q Consensus 72 ~~~~~~~~~---~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt 143 (1445)
..++..... ..+... +.+..+.. +++.++..++++++.++.+.||.|+.+++..+.+||++. +++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 163 (1622)
T PLN03130 87 EPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVL--- 163 (1622)
T ss_pred HHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHH---
Confidence 332221110 111111 11222333 666788888888888899999999999999999999998 7777662
Q ss_pred Hhhhhhhhh---hhHHHHHHHHHHHHHHHH-HHHHhhcccCccccc---ccccccCCCC-CcCCCCCCCCCCCChhHHHH
Q 000522 144 TFSSFEVLK---CLKEICLVLLDIMFGISI-NIIRVKRASSRRSSI---EESLLSVDGD-VEEDCNTDSGNNQSYWDLMA 215 (1445)
Q Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~e~~~~~~sr~~ 215 (1445)
..++.... .. ....+++.+.+.++. ++.+..++.+ .+. .+...+.+++ .....+++||+++|+|||++
T Consensus 164 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~ 239 (1622)
T PLN03130 164 -SVKEYYSSFVLYL-YISEVAAQVLFGILLLVYFPNLDPYP--GYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIF 239 (1622)
T ss_pred -HHHHHHhccccce-ehhHHHHHHHHHHHHHHHHhcCCCCc--ccccccccccccccccCCcccCCCCcccccCHHHHHH
Confidence 11111111 11 222333344433333 2222222211 110 0000000000 01234678999999999999
Q ss_pred HHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 000522 216 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIG 295 (1445)
Q Consensus 216 f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~ 295 (1445)
|||++|++++|||++|+.+|||+++++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++..++.
T Consensus 240 F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1622)
T PLN03130 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL-K-KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQ 317 (1622)
T ss_pred HHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875 2 35689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh
Q 000522 296 FAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD 375 (1445)
Q Consensus 296 ~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~ 375 (1445)
+++|++++.+++++.++...+.++++++++++..++.+++.++|.+...+++.++|+.+...+|+|+++++...+++.++
T Consensus 318 ~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 318 FVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999764444667877777777777777788888888999999999999999999999999988888899
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 376 GEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455 (1445)
Q Consensus 376 g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 455 (1445)
|+++|+|++|++++.+....+|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.++++++.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHH
Q 000522 456 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMV 535 (1445)
Q Consensus 456 R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ 535 (1445)
|++.++|+++|||+||+||||+.+.+++++.|++|++..++..+..++..+++...|.++.+++|++|.+.++.+|++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEec
Q 000522 536 FTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW 615 (1445)
Q Consensus 536 ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w 615 (1445)
|+++++++.+..|+..+|..+..+.++++|++||++||+.+|..+... .+. ......|+++|++|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~----~~~---------~~~~~~I~~~nvsf~y 624 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN----PPL---------EPGLPAISIKNGYFSW 624 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC----Ccc---------cCCCCceEEEeeEEEc
Confidence 999999999999999999999999999999999999998765422100 000 0122469999999999
Q ss_pred ccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCC-eEEEEcCeEEEEcCCCCCCCccHHHHHhc
Q 000522 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAYVPQVPWILSGTIRDNILF 694 (1445)
Q Consensus 616 ~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~-G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~ 694 (1445)
++.++ +++|+|+||++++|++++|+||+|||||||+++|+|+++|++ |+|.++++||||+|+|||||+||||||+|
T Consensus 625 ~~~~~---~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~f 701 (1622)
T PLN03130 625 DSKAE---RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701 (1622)
T ss_pred cCCCC---CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhC
Confidence 75332 345999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHH
Q 000522 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774 (1445)
Q Consensus 695 g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~ 774 (1445)
|+++|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++|++
T Consensus 702 g~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred CCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhccccCcccccccchhhhhhhh--hhhcc-ccc
Q 000522 775 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ--EMRTN-ASS 851 (1445)
Q Consensus 775 ~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~ 851 (1445)
+|+.+ .++++|+|+|||+++.++.||+|++|++|+|+++|+++|++++.+.+..+..+.....+.... +.... ...
T Consensus 782 ~~l~~-~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1622)
T PLN03130 782 KCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSS 860 (1622)
T ss_pred HHhhH-HhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccccccccc
Confidence 98766 568899999999999999999999999999999999999987655443322111000000000 00000 000
Q ss_pred hhh-h---hhhhhcc--cccCCchhhHHHHHHHHhcCccchhhHHHHHhhhhH-HHHHHHHHHHHHHHHHHhhhhhHhhh
Q 000522 852 ANK-Q---ILLQEKD--VVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW-FITLVICLSAILMQASRNGNDLWLSY 924 (1445)
Q Consensus 852 ~~~-~---~~~~~~~--~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wl~~ 924 (1445)
... . ....... ..+..+......++|+++.|.+++++|++|+++.|. +.+++++++.++.++...++++|+++
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 940 (1622)
T PLN03130 861 KPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940 (1622)
T ss_pred ccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000000 000000112234567788999999999999998653 34444455666778888899999999
Q ss_pred hhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHh
Q 000522 925 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1004 (1445)
Q Consensus 925 w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~ 1004 (1445)
|++.... ......+|+++|++++++..++.+++.+.+.+.+.+++.++|++++++++++|++|||++|+|+|+|||++
T Consensus 941 w~~~~~~--~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~ 1018 (1622)
T PLN03130 941 WTDQGTP--KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAK 1018 (1622)
T ss_pred HHhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHH
Confidence 9975322 12234568888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHh
Q 000522 1005 DLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTET 1084 (1445)
Q Consensus 1005 D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Et 1084 (1445)
|++.+|..++..+..++..++.+++.++++++..|+++++++|+.++++.++++|.+++|++++++.++++|+++|+.|+
T Consensus 1019 Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Et 1098 (1622)
T PLN03130 1019 DLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEA 1098 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999988888888888888888898888888899999999999999999999999999999
Q ss_pred hccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHH
Q 000522 1085 LNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGL 1164 (1445)
Q Consensus 1085 l~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl 1164 (1445)
++|+.|||+|+++++|.+++.+..|.+++..+.....++|+++++++++++++.+.+.+.+.... ........++.+|+
T Consensus 1099 l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~-~~~~~~~~~~~~G~ 1177 (1622)
T PLN03130 1099 LNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNG-RAENQAAFASTMGL 1177 (1622)
T ss_pred hCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccccchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999888766555544443211 10011122678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEeCCCCCcccee
Q 000522 1165 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1242 (1445)
Q Consensus 1165 ~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~ 1242 (1445)
+++|++.+...++++.+.+.++|+.++|+||+.+|.+.|+|+.. +...+++.||.+|.|+|+||+|+|+++.++||+|
T Consensus 1178 ~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~ 1257 (1622)
T PLN03130 1178 LLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1257 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecc
Confidence 99999999999999999999999999999999999998887532 2234556799999999999999999877789999
Q ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC
Q 000522 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH 1322 (1445)
Q Consensus 1243 isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~ 1322 (1445)
+||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+||++++++++|++|++|||||+||+||||+||||++
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~ 1337 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN 1337 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHH
Q 000522 1323 MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400 (1445)
Q Consensus 1323 ~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I 1400 (1445)
+++|+|+|+||++|+++++++++ ||||.++|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|
T Consensus 1338 ~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130 1338 EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417 (1622)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1401 SSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1401 ~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++.+++||||+||||++|+++||||+|||+|+|+|+|+|+++
T Consensus 1418 ~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1418 REEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred HHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999886
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-204 Score=2075.39 Aligned_cols=1412 Identities=30% Similarity=0.514 Sum_probs=1162.4
Q ss_pred cCCCCc-cccccc------ccccchhhHHHHHhhhhHHHH-HHhhh-cc-cccCCcccchhhHHHHHHHHHHHHHHHHHH
Q 000522 4 ICPNSP-FVWDGS------TFSKCFDDMILDFATNMVTIF-IILII-GI-TQRSPRQNQRINLMEKVFLHILPLVGACLS 73 (1445)
Q Consensus 4 ~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 73 (1445)
+|+... ..|.+. .+.+||++..+...++.+..+ ..+.. -. ..++...+..+..+.|+.+.+++++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1495)
T PLN03232 9 YCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEP 88 (1495)
T ss_pred hcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHH
Confidence 785322 245543 356999995555555444433 21111 11 012222222236666666655554433333
Q ss_pred HHHHHH---HHHHhhc-CccccchH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhHHh
Q 000522 74 SVDVIL---LLKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLVTF 145 (1445)
Q Consensus 74 ~~~~~~---~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt~~ 145 (1445)
+..... ...+... .....+.. +++.++..++++++..+.+.||.|+.+++..+.+||++. +++.++. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 164 (1495)
T PLN03232 89 VLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVL----P 164 (1495)
T ss_pred HHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHH----H
Confidence 222111 0111111 11223334 667788888888788899999999999999999999999 7777762 1
Q ss_pred hhhhhhh---hhHHHHHHHHHHHHHHHH-HHHHhhcccCcccccccccccC-CC-CCcCCCCCCCCCCCChhHHHHHHhH
Q 000522 146 SSFEVLK---CLKEICLVLLDIMFGISI-NIIRVKRASSRRSSIEESLLSV-DG-DVEEDCNTDSGNNQSYWDLMAFKSI 219 (1445)
Q Consensus 146 ~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~e~~~~~~sr~~f~Wl 219 (1445)
.++.... .. ....+++.+.+.+.. +..+..++.+.-.....+...+ .+ ..+....++||+++|+|||++|+|+
T Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~ 243 (1495)
T PLN03232 165 LKNSINRTALYL-CISSRCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWM 243 (1495)
T ss_pred HHHHHhccccce-ehhHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHHHH
Confidence 1111111 11 122222333332222 2222222111000000000000 00 0011246789999999999999999
Q ss_pred HHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 000522 220 DSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 299 (1445)
Q Consensus 220 ~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P 299 (1445)
+|++++||+++|+.+|||+|+++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++.+++.+++|
T Consensus 244 ~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P 321 (1495)
T PLN03232 244 TPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES-R-RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGP 321 (1495)
T ss_pred HHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999765 2 356899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHH
Q 000522 300 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQ 379 (1445)
Q Consensus 300 ~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~ 379 (1445)
++++.+++++++++..+.++.+++++++..++.+++.++|.+...+++.++|+.+...+|+|+++++....++.++|+++
T Consensus 322 ~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~ 401 (1495)
T PLN03232 322 VILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVT 401 (1495)
T ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHH
Confidence 99999999997644455688888888888888999999999999999999999999999999999999888888999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 380 TFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRR 459 (1445)
Q Consensus 380 nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~ 459 (1445)
|+|++|++++.+....+|.+|..|++++++++++|+.+|++++++++++++++|++.++++++++.++++++.+|+|.+.
T Consensus 402 n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~ 481 (1495)
T PLN03232 402 NMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGI 481 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHH
Q 000522 460 TGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 539 (1445)
Q Consensus 460 ~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l 539 (1445)
++|+++|||+||+||||+.+.+++++.|++|++..++..+..++..+++...|.++.+++|++|.+.++.+|++.+|+++
T Consensus 482 ~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l 561 (1495)
T PLN03232 482 INEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSL 561 (1495)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988888877777788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCC
Q 000522 540 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNN 619 (1445)
Q Consensus 540 ~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~ 619 (1445)
++++.+..|+..+|..+..+.++++|++||++|++.++..+... .+. ......++++|++|+|+..+
T Consensus 562 ~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~----~~~---------~~~~~~I~~~~vsF~y~~~~ 628 (1495)
T PLN03232 562 SLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN----PPL---------QPGAPAISIKNGYFSWDSKT 628 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc----CCc---------CCCCCcEEEEeeEEEcCCCC
Confidence 99999999999999999999999999999999998665321100 000 01234699999999997532
Q ss_pred ccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeE-EEEcCeEEEEcCCCCCCCccHHHHHhcCCCC
Q 000522 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHASGSIAYVPQVPWILSGTIRDNILFGKNY 698 (1445)
Q Consensus 620 ~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~-i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~~~ 698 (1445)
+ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|. +.++++||||+|+|||||+||||||+||+++
T Consensus 629 ~---~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~ 705 (1495)
T PLN03232 629 S---KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDF 705 (1495)
T ss_pred C---CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCcc
Confidence 2 34599999999999999999999999999999999999999975 5678999999999999999999999999999
Q ss_pred ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhc
Q 000522 699 DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 778 (1445)
Q Consensus 699 ~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~ 778 (1445)
|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++|+++|+.
T Consensus 706 ~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~ 785 (1495)
T PLN03232 706 ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785 (1495)
T ss_pred CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhccccCcccccccchhhhhhhhhh-hccccc-h-hhh
Q 000522 779 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEM-RTNASS-A-NKQ 855 (1445)
Q Consensus 779 ~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~ 855 (1445)
+ .++++|+|+|||+++.++.||+|++|++|+|+++|+++|+.+..+.+..+..+.....+..+... ..+... . ..+
T Consensus 786 ~-~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1495)
T PLN03232 786 D-ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVT 864 (1495)
T ss_pred h-hhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccccccccccccccc
Confidence 6 56889999999999999999999999999999999999998765544433221110000000000 000000 0 000
Q ss_pred hhhhhc---ccccCCchhhHHHHHHHHhcCccchhhHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCC
Q 000522 856 ILLQEK---DVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG-WFITLVICLSAILMQASRNGNDLWLSYWVDTTGS 931 (1445)
Q Consensus 856 ~~~~~~---~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~ 931 (1445)
....+. +..+..+......++|+++.|.+++++|++|+++.| ++...+++++.++.++...++++|+++|++....
T Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~ 944 (1495)
T PLN03232 865 IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP 944 (1495)
T ss_pred ccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 000000 000000011224466778899999999999999865 3444455556667778888899999999875321
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhh
Q 000522 932 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDD 1011 (1445)
Q Consensus 932 ~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~ 1011 (1445)
......+|+++|++++++..++.+++.+.+...+.+++.++|++++++++++|++||+++|+|+++|||++|++.+|+
T Consensus 945 --~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~ 1022 (1495)
T PLN03232 945 --KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDR 1022 (1495)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHH
Confidence 122346789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHH
Q 000522 1012 SLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTI 1091 (1445)
Q Consensus 1012 ~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tI 1091 (1445)
.++..+..++..++.+++.++++++..++++++++|+.++++.++.+|.+++|++++.+..+++|+++++.|+++|+.||
T Consensus 1023 ~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tI 1102 (1495)
T PLN03232 1023 NVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSI 1102 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHH
Confidence 99999999988888888888877777788778888888888888899999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHH
Q 000522 1092 RAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAP 1171 (1445)
Q Consensus 1092 raf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~ 1171 (1445)
|+||++++|.+++.+..|.+++..+.....++|+..++++++++++.+.+.+.+... +........++.+|++++|+..
T Consensus 1103 raf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~g~~~~~~~~ 1181 (1495)
T PLN03232 1103 RAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRN-GNAENQAGFASTMGLLLSYTLN 1181 (1495)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999998899999999998887655544444443321 1110111235678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeC
Q 000522 1172 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEG 1249 (1445)
Q Consensus 1172 ~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~ 1249 (1445)
+..+++++++.+.++|+.++|+||+.++.+.|+|+.. +...++++||.+|.|+|+||+|+|+++.++||+|+||+|+|
T Consensus 1182 ~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1182 ITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcC
Confidence 9999999999999999999999999999998877532 22234567999999999999999988778899999999999
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCCCChHHH
Q 000522 1250 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1329 (1445)
Q Consensus 1250 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei 1329 (1445)
|||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+|||||||||+++++|+|+
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei 1341 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADL 1341 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCc
Q 000522 1330 WSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1407 (1445)
Q Consensus 1330 ~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~ 1407 (1445)
|+|+++++++++++++ ||||.++|+|.||||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++|
T Consensus 1342 ~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~ 1421 (1495)
T PLN03232 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC 1421 (1495)
T ss_pred HHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1408 TVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1408 TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||+||||++|+++||||+|||+|+|+|+|+|+|+
T Consensus 1422 TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232 1422 TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred EEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999886
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-194 Score=1965.51 Aligned_cols=1215 Identities=27% Similarity=0.457 Sum_probs=1061.6
Q ss_pred CCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhHhH
Q 000522 202 TDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPY 281 (1445)
Q Consensus 202 ~~~e~~~~~~sr~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~ 281 (1445)
++||+++|+|||++|||+||++++||+++|+.+|||+|+++++++.+.++|++.|+++..++.++++|+++++++|+|++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999998765333456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 282 ICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS--GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359 (1445)
Q Consensus 282 ~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy 359 (1445)
+..++++++.+++.+++|+++++++++++... ..+.+|++++++++++++.+++.+++.|...++++++|++|...||
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy 162 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996422 2456899999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000522 360 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 439 (1445)
Q Consensus 360 ~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~~~~~~~~~~ 439 (1445)
+|+|+++....++.++|+++|+|++|++++..+...+|.+|..|+++++++++||+++|+++++|++++++++|++.+++
T Consensus 163 ~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~ 242 (1490)
T TIGR01271 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLG 242 (1490)
T ss_pred HHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 440 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 519 (1445)
Q Consensus 440 ~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1445)
+++.++++++++.+|+|++.++|+|+|||+||+||||+.|.+++++.|++|++..++..++..+..+++...|.++++++
T Consensus 243 ~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1490)
T TIGR01271 243 QKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888999999999
Q ss_pred HHHHHHhCCCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccCCCcc
Q 000522 520 FGLFALMGHQLDAAMVFTCLALFNSLISPLN-SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSN 598 (1445)
Q Consensus 520 f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~-~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 598 (1445)
|++|.+.++ ++++.+||+++++++++.|+. .+|..+..+.++.+|++||++||..+|.++...
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--------------- 386 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--------------- 386 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc---------------
Confidence 999988755 789999999999999999985 799999999999999999999998776432100
Q ss_pred CCCCCceEEEEccEEecccCC----------------c-c-----------ccccceeeeeeEeeCCCEEEEEcCCCCcH
Q 000522 599 FNSKDMAVIMQDATCSWYCNN----------------E-E-----------EQNVVLNQVSLCLPKGSLVAVIGEVGSGK 650 (1445)
Q Consensus 599 ~~~~~~~i~~~~~~f~w~~~~----------------~-~-----------~~~~~l~~i~l~i~~G~~~~ivG~~GsGK 650 (1445)
......++++|++|.|+... . . ..+++|+|+||+|++|++++|+|||||||
T Consensus 387 -~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGK 465 (1490)
T TIGR01271 387 -NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465 (1490)
T ss_pred -cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCH
Confidence 01123588999999995310 0 0 01357999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCeEEEEcCeEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000522 651 SSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1445)
Q Consensus 651 Stll~~l~g~~~~~~G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~ 730 (1445)
||||++|+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|++|++.+|+||+|.+|++
T Consensus 466 STLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~ 545 (1490)
T TIGR01271 466 SSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545 (1490)
T ss_pred HHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCE
Q 000522 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1445)
Q Consensus 731 g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~ 810 (1445)
|.+|||||||||+||||+|++|++|||||||||||+++++++++.|+.+ +.+++|+|++||+++.++.||+|++|++|+
T Consensus 546 g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~-~~~~~tvilvtH~~~~~~~ad~ii~l~~g~ 624 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK-LMSNKTRILVTSKLEHLKKADKILLLHEGV 624 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCCeEEEEeCChHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999987655 567899999999999999999999999999
Q ss_pred EEEecCHhHHHhccccCccccc--------------------------c--c-----c-hh------hhhhhhhh-----
Q 000522 811 VKWIGSSADLAVSLYSGFWSTN--------------------------E--F-----D-TS------LHMQKQEM----- 845 (1445)
Q Consensus 811 i~~~g~~~~~~~~~~~~~~~~~--------------------------~--~-----~-~~------~~~~~~~~----- 845 (1445)
+++.|+++++......+..... + . + .. ...+....
T Consensus 625 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1490)
T TIGR01271 625 CYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSI 704 (1490)
T ss_pred EEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998754211100000 0 0 0 00 00000000
Q ss_pred --------------------------h--ccccch------hh----h-h----h--------------------hh---
Q 000522 846 --------------------------R--TNASSA------NK----Q-I----L--------------------LQ--- 859 (1445)
Q Consensus 846 --------------------------~--~~~~~~------~~----~-~----~--------------------~~--- 859 (1445)
+ .....+ .. + . . ..
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1490)
T TIGR01271 705 ILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNR 784 (1490)
T ss_pred cccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccc
Confidence 0 000000 00 0 0 0 00
Q ss_pred -----hc--cc--------------c-------c-CCc-----------h--hhHHHHHHHHhcCccchhhHHHHHhhhh
Q 000522 860 -----EK--DV--------------V-------S-VSD-----------D--AQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1445)
Q Consensus 860 -----~~--~~--------------~-------~-~~~-----------~--~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1445)
+. +. . . ..+ + .....++|+++.|.++|++|++|+++.|
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g 864 (1490)
T TIGR01271 785 GENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNR 864 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcC
Confidence 00 00 0 0 000 0 0123455677889999999999999876
Q ss_pred H-HHHHHHHHHHHHHHHHHhhhhhHhhhhhcccC-----C-CCC-----------CcchhHH-HHHHHHHHHHHHHHHHH
Q 000522 898 W-FITLVICLSAILMQASRNGNDLWLSYWVDTTG-----S-SQT-----------KYSTSFY-LVVLCIFCMFNSFLTLV 958 (1445)
Q Consensus 898 ~-~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-----~-~~~-----------~~~~~~~-l~~~~~l~~~~~i~~~~ 958 (1445)
+ ..+++++++.++.+++..++++|+.+|..... . .+. .....+| +.+|+++.++..++.++
T Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1490)
T TIGR01271 865 NLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFF 944 (1490)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5 44444456667778899999999999875210 0 000 0011233 44555555556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 000522 959 RAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQ 1038 (1445)
Q Consensus 959 ~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1038 (1445)
+.+++...+.+++.++|++++++++++|++||+++|+|+++|||++|++.+|+.+|..+..++..++.+++.++++++..
T Consensus 945 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~ 1024 (1490)
T TIGR01271 945 RGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQ 1024 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1039 VFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSE 1118 (1445)
Q Consensus 1039 ~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~ 1118 (1445)
|+++++++|++++++.++++|.+++|++++++..+++|+++|+.|+++|+.|||+||++++|.+++.+..+.+++..+..
T Consensus 1025 p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1490)
T TIGR01271 1025 PYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99988899998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1119 LTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLE 1198 (1445)
Q Consensus 1119 ~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~ 1198 (1445)
.+.++|+..++++++.+++..++++++.. ....+|.+|++++|++.+...++++++.+.++|+.+.|++|+.+
T Consensus 1105 ~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-------~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1177 (1490)
T TIGR01271 1105 LSTLRWFQMRIDIIFVFFFIAVTFIAIGT-------NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFK 1177 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765544433333321 11346778999999999999999999999999999999999999
Q ss_pred hhcCCcccccc----------------CCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCC
Q 000522 1199 YMDVPQEELCG----------------YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAG 1262 (1445)
Q Consensus 1199 ~~~~~~e~~~~----------------~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSG 1262 (1445)
|.+.|+|+... ...+++.||..|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||
T Consensus 1178 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsG 1257 (1490)
T TIGR01271 1178 FIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSG 1257 (1490)
T ss_pred HhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCC
Confidence 99887764211 01234579999999999999999987789999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHH
Q 000522 1263 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1342 (1445)
Q Consensus 1263 KSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i 1342 (1445)
||||+++|+|+++ ++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||+++++++++
T Consensus 1258 KSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i 1336 (1490)
T TIGR01271 1258 KSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVI 1336 (1490)
T ss_pred HHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHH
Confidence 9999999999998 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHh
Q 000522 1343 EAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1420 (1445)
Q Consensus 1343 ~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~ 1420 (1445)
+++ ||||.|+|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++++.
T Consensus 1337 ~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~ 1416 (1490)
T TIGR01271 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL 1416 (1490)
T ss_pred HhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCCeEeeecCCCCC
Q 000522 1421 NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1421 ~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||||+||++|+|+|+|+|+++
T Consensus 1417 ~~DrIlvL~~G~ivE~g~p~~L 1438 (1490)
T TIGR01271 1417 ECQQFLVIEGSSVKQYDSIQKL 1438 (1490)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999876
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-183 Score=1864.20 Aligned_cols=1234 Identities=32% Similarity=0.526 Sum_probs=1053.6
Q ss_pred CCCCCCCCChhHHHHHHhHHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHH----------HHHhhh---------
Q 000522 201 NTDSGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSC----------WQAQRS--------- 261 (1445)
Q Consensus 201 ~~~~e~~~~~~sr~~f~Wl~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~----------w~~~~~--------- 261 (1445)
.+.||+++|||.|+++.|++|++.+..|..|+.+|||+...+.++-++..++.+. |+-...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 4569999999999999999999999999999999999998888876666555443 321100
Q ss_pred --------------------------------c-----------------------------------------------
Q 000522 262 --------------------------------C----------------------------------------------- 262 (1445)
Q Consensus 262 --------------------------------~----------------------------------------------- 262 (1445)
+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred ----------CCCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHH
Q 000522 263 ----------NCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSIL 331 (1445)
Q Consensus 263 ----------~~~~~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~l~~~~~~ 331 (1445)
.++..+|+++++++|++.++..++++++.+++.+++|++++.++++++++. ....|+++++++++++++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 012348999999999999999999999999999999999999999997633 334578889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 332 KSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERS--EFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVA 409 (1445)
Q Consensus 332 ~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~--~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~ 409 (1445)
++++.++|.|...+.+.++|++|...||+|+++++..+.. +.++|+++|+|++|++++..+..++|.+|.+|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887654 56889999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHH
Q 000522 410 LYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSS 489 (1445)
Q Consensus 410 ~~lL~~~lg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~ 489 (1445)
+++||+.+|+++++|++++++++|++.++++++.+.++++++++|+|++.++|+++|||+||+||||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 490 EVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRL 569 (1445)
Q Consensus 490 El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri 569 (1445)
|++.+++..+..++..++++.+|.++.+++|++|.+.++.||++.+||++++|++++.|+.++|..++.+.++++|++||
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcchh----hhh-----hcCCCCcc----cCC----------------------------------CccCCCC
Q 000522 570 TRFLGCSEYKHE----LEQ-----AANSPSYI----SNG----------------------------------LSNFNSK 602 (1445)
Q Consensus 570 ~~fL~~~e~~~~----~~~-----~~~~~~~~----~~~----------------------------------~~~~~~~ 602 (1445)
++||+.+|.... ... ....+... ... .......
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 999987763210 000 00000000 000 0000011
Q ss_pred CceEEEEccEEecccCCc----------------------------------cccccceeeeeeEeeCCCEEEEEcCCCC
Q 000522 603 DMAVIMQDATCSWYCNNE----------------------------------EEQNVVLNQVSLCLPKGSLVAVIGEVGS 648 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~----------------------------------~~~~~~l~~i~l~i~~G~~~~ivG~~Gs 648 (1445)
...+.++|++|+|+.... ...+++|+|+||++++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 234667777777642100 0123479999999999999999999999
Q ss_pred cHHHHHHHHhcCccCCCeEEEEcCeEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCccccc
Q 000522 649 GKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1445)
Q Consensus 649 GKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg 728 (1445)
||||||++|+|+++|++|+|.++++||||+|+||++++||+|||.|+.++|+++|++++++|+|++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeC
Q 000522 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1445)
Q Consensus 729 ~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~ 808 (1445)
++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+ ..+++|+|++||+++.++.||+|++|++
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999987665 4568999999999999999999999999
Q ss_pred CEEEEecCHhHHHhccccCcccccccc---h--hhhhhhh--hhhcccc---c-h---hhhhhh-hhcccccCCchhhHH
Q 000522 809 GQVKWIGSSADLAVSLYSGFWSTNEFD---T--SLHMQKQ--EMRTNAS---S-A---NKQILL-QEKDVVSVSDDAQEI 873 (1445)
Q Consensus 809 G~i~~~g~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~--~~~~~~~---~-~---~~~~~~-~~~~~~~~~~~~~~~ 873 (1445)
|++.++|+++++.+... +........ . ......+ ..+.... . . ..+... ...+...........
T Consensus 857 G~i~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTSL-YATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred CEEEEecCHHHHHhChH-HHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 99999999999875421 111111000 0 0000000 0000000 0 0 000000 000000000112234
Q ss_pred HHHHHHhcCccchhhHHHHHhhhhHHH-HHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHH
Q 000522 874 IEVEQRKEGRVELTVYKNYAKFSGWFI-TLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFN 952 (1445)
Q Consensus 874 ~~~e~~~~g~v~~~~y~~y~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~ 952 (1445)
.++|+++.|.++|++|++|++..|... ++.++++.++.+++..++++|+++|++... ......|+++|+++.++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~----~~~~~~~l~~y~~~~~~~ 1011 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF----KLSAATYLYVYLGIVLLG 1011 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCcccHHHHHHHHHHHH
Confidence 566777889999999999999876443 344444455667788889999999987431 122346788888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhh
Q 000522 953 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1032 (1445)
Q Consensus 953 ~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~ 1032 (1445)
.++.+++.+.....+.++++++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHH
Q 000522 1033 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQ 1112 (1445)
Q Consensus 1033 ~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~ 1112 (1445)
++++..|+++++++|+.++++.++++|.+.+|++++.+..+++|+++++.|+++|+.|||+||+++.|.+++.+..|.+.
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888898888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1113 RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVS 1192 (1445)
Q Consensus 1113 ~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~s 1192 (1445)
++.+.....++|+..+++++..+++.+++++.+..... ..+..++|.++++++|+..+..+++++++.+.++|+.++|
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s 1249 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTML--RATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNS 1249 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876554444333322110 0122468899999999999999999999999999999999
Q ss_pred HHHHHHhhcC-Ccccccc-------------------------CCCCC---CCCCCCccEEEEEEEEEeCCCCCccceee
Q 000522 1193 LERVLEYMDV-PQEELCG-------------------------YQSLS---PDWPFQGLIEFQNVTMRYKPSLPAALHDI 1243 (1445)
Q Consensus 1193 v~Ri~~~~~~-~~e~~~~-------------------------~~~~~---~~wp~~g~I~f~nVs~~Y~~~~~~vL~~i 1243 (1445)
++|+.+|.+. |+|+... ...++ +.||..|.|+|+||+|+|+++.++||+||
T Consensus 1250 ~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~v 1329 (1560)
T PTZ00243 1250 VERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGV 1329 (1560)
T ss_pred HHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecc
Confidence 9999999964 3332100 01111 23556799999999999988777899999
Q ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCC
Q 000522 1244 NFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1323 (1445)
Q Consensus 1244 sl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~ 1323 (1445)
||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~ 1409 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE 1409 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccC-CCEEEEeccccCCCHHHHHHHHHHH
Q 000522 1324 NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS-SKVLCLDECTANVDAQTASILQNAI 1400 (1445)
Q Consensus 1324 ~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~-~~ILlLDEaTS~lD~~te~~Iq~~I 1400 (1445)
++|+|+|+|+++||++++++++ ||||.++|+|.|||||||||||||||||++ |+|||||||||+||++||+.||++|
T Consensus 1410 ~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243 1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489 (1560)
T ss_pred CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999998 999999999999999999999999999996 8999999999999999999999999
Q ss_pred HHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1401 SSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1401 ~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++.|++||||+||||++++.+||+|+|||+|+|+|+|+|+|+
T Consensus 1490 ~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eL 1531 (1560)
T PTZ00243 1490 MSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPREL 1531 (1560)
T ss_pred HHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999886
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-144 Score=1358.62 Aligned_cols=1141 Identities=21% Similarity=0.256 Sum_probs=838.1
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCCC-c-----hHHHHHHHHHHHHHHHHHHH-HH
Q 000522 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLN---KLIKFLQQGSG-H-----LDGYVLAIALGLTSILKSFF-DT 337 (1445)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~---~li~~~~~~~~-~-----~~g~~l~~~l~~~~~~~~~~-~~ 337 (1445)
++++-+..+-++++++..+..+...+....+|++.- .+.+.+....+ . ..-.++.+.+.+..++.+++ ..
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445566777777777777777888887543 33333332111 1 11111111222222222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 000522 338 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-----SFHDAWSLPFQIGVALYL 412 (1445)
Q Consensus 338 ~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-----~~~~~~~~p~~i~i~~~l 412 (1445)
.+.+...|...++|......+ ||...+.++....|++.+-|+.|+++|++++. ++|.+-....-++++++.
T Consensus 94 c~~~~geRq~~riR~~yl~~i----LrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAI----LRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888887776666 45566666666779999999999999998643 334333333333443333
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHH
Q 000522 413 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVK 492 (1445)
Q Consensus 413 L~~~lg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~ 492 (1445)
.|++. ++.+.+..+++.....+++.+.+...+.+++..+.-+...|++++||+|-.|+.|+...++..+.-+.-.+
T Consensus 170 -~W~Lt---lv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k 245 (1228)
T KOG0055|consen 170 -GWKLT---LVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALK 245 (1228)
T ss_pred -HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 33333 33444444455556777888888888888888899999999999999999999999888887665443334
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 493 HLSTRKYLDAWCVFFW--ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 570 (1445)
Q Consensus 493 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~ 570 (1445)
...+......+...+. .........+|||..++..+..+++++|+.+...-.-...|.+....++.+..|+++..+|.
T Consensus 246 ~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~ 325 (1228)
T KOG0055|consen 246 FGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIF 325 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHH
Confidence 4333333333332221 22223445688887777788899999999886666666778888899999999999999999
Q ss_pred HHhCCCCcchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcH
Q 000522 571 RFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGK 650 (1445)
Q Consensus 571 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGK 650 (1445)
+-++....-+.... ++. ......+.|+++|+.|+||++++ .++|+|+||+|++|+.+++||||||||
T Consensus 326 ~~i~~~~~i~~~~~---------~~~-~~~~~~g~ief~nV~FsYPsRpd---v~Il~g~sl~i~~G~~valVG~SGsGK 392 (1228)
T KOG0055|consen 326 ETIDRKPSIDPYSK---------GGR-VLSSIKGEIEFRNVCFSYPSRPD---VKILKGVSLKIPSGQTVALVGPSGSGK 392 (1228)
T ss_pred HHhcCCCCCCcccc---------cCC-cccccccceEEEEEEecCCCCCc---chhhCCeEEEeCCCCEEEEECCCCCCH
Confidence 98865432221100 000 11235678999999999998754 345999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHH
Q 000522 651 SSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDI 716 (1445)
Q Consensus 651 Stll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~d~ 716 (1445)
||++++|.|.|+|++|+|.++| +||.|.|+|.||++||+|||.||+|. +.++..++++....++.+
T Consensus 393 ST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi 472 (1228)
T KOG0055|consen 393 STLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFI 472 (1228)
T ss_pred HHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHH
Confidence 9999999999999999999997 59999999999999999999999864 678888889888999999
Q ss_pred hhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchh
Q 000522 717 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796 (1445)
Q Consensus 717 ~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~ 796 (1445)
..+|+|++|.+||+|..|||||||||||||||.++|+||||||||||||++.++.+ +.++.. ..+|+|.|+|+||++.
T Consensus 473 ~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~-~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 473 LKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDK-ASKGRTTIVVAHRLST 550 (1228)
T ss_pred HhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHH-hhcCCeEEEEeeehhh
Confidence 99999999999999999999999999999999999999999999999999976654 454654 7789999999999999
Q ss_pred hhhCCEEEEEeCCEEEEecCHhHHHhccccCcccccccchhhhhhh-hh----hhccccch--hhhhhhhhccc--ccCC
Q 000522 797 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQK-QE----MRTNASSA--NKQILLQEKDV--VSVS 867 (1445)
Q Consensus 797 l~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~--~~~~~~~~~~~--~~~~ 867 (1445)
+++||+|++|++|+|+|.|+|+||++..+.+.++.+.++.....+. ++ .+....+. ........... ....
T Consensus 551 IrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~ 630 (1228)
T KOG0055|consen 551 IRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLL 630 (1228)
T ss_pred hhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccc
Confidence 9999999999999999999999999888777665422211110000 00 00000000 00000000000 0000
Q ss_pred --chhhHHHHHHHHhcCccchhhHHHHHhh--hhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCC---CCcchhH
Q 000522 868 --DDAQEIIEVEQRKEGRVELTVYKNYAKF--SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQ---TKYSTSF 940 (1445)
Q Consensus 868 --~~~~~~~~~e~~~~g~v~~~~y~~y~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~---~~~~~~~ 940 (1445)
+..++..++...++. ....++.-++. ..|..+++..+..++..+....-.+.+++..+...... .......
T Consensus 631 ~~~~~~e~~~~~~~~~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~ 708 (1228)
T KOG0055|consen 631 SVKPEGEDPEEPVSEED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA 708 (1228)
T ss_pred ccccccccccccccccc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 000000000000001 11122233331 25666666655555555444443444443332211111 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--CChhHHHHHHHhhHHHHhhhhHHHHH
Q 000522 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILN 1018 (1445)
Q Consensus 941 ~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~--~~~G~ilnRfs~D~~~id~~l~~~l~ 1018 (1445)
|..+|++++++..+..++..+++.+++.+...++|.++|++++++++.|||. +. |.|.+|+++|...+...+...+.
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999996 56 99999999999999999988888
Q ss_pred HHHHHHHhHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchhHhHHHHhhccHHHHHhc
Q 000522 1019 ILLANFVGLLGIAVVLSYVQVFF---LLLLVPFWFIYSKLQFFYRS-TSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1094 (1445)
Q Consensus 1019 ~~~~~~~~~l~~~~~~~~~~~~~---~~~~~pl~~~~~~i~~~y~~-~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf 1094 (1445)
.++..+..++..+++.++..|-+ .+++.|++++..+.+..+.. .+++.+....+ ......|++.+++||++|
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~e----a~~iA~eai~NIrTV~al 863 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEE----ASKIAIEAVSNIRTVAAL 863 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHhHHHHHHH
Confidence 88888877777766666666654 45667777776666655443 33333332222 224678999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHH
Q 000522 1095 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1174 (1445)
Q Consensus 1095 ~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~ 1174 (1445)
+.|++|.+.|.+.++...+..... ..|.++...+-..++.+.-++....+... ...+..++..+..++..+..-..
T Consensus 864 ~~e~~~~~~y~~~l~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~L-i~~g~~~~~~~~~vf~~l~~ta~ 939 (1228)
T KOG0055|consen 864 CAEEKFMELYKEELEKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARL-ISNGEMTFEDVFRVFMALSFTAM 939 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HhcCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999888877766554 34444444443333333322222222111 11234455555544444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEE
Q 000522 1175 LLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQV 1253 (1445)
Q Consensus 1175 ~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~Gekv 1253 (1445)
.+.......++..++..|+.+++++++.+++-...........+.+|+|+|+||+|+||.. ..+||+|+||+|++||++
T Consensus 940 ~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTv 1019 (1228)
T KOG0055|consen 940 ALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTV 1019 (1228)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEE
Confidence 6677888889999999999999999988764321111111112368999999999999743 237999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC-CCChHHHHHH
Q 000522 1254 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSV 1332 (1445)
Q Consensus 1254 gIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~a 1332 (1445)
|+||||||||||++.+|.|+|+|.+|.|.|||+||+++++++||++|++|+|||.||++||||||.++. +.+.+||.+|
T Consensus 1020 ALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1020 ALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEA 1099 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999983 4699999999
Q ss_pred HHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEE
Q 000522 1333 LEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1410 (1445)
Q Consensus 1333 L~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI 1410 (1445)
++.++.++||.++ ||||.|||+|.+||||||||||||||++|||||||||||||+||.++|+.+|+++++...+||+|
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1411 TIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1411 ~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||+||++||.|+|+++|+|+|.|+|+++
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred EEecchhhhhcCCEEEEEECCEEEecccHHHH
Confidence 99999999999999999999999999999987
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-132 Score=1345.50 Aligned_cols=1145 Identities=17% Similarity=0.201 Sum_probs=832.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1445)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 348 (1445)
+++-..+.+++.++.+.++.++..++....|+++.++++.+..... ...++..++++.++..++...+.+...+++.
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN---VNDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344566667777788888888888899999999987642211 1223334444555566667777788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---hhHhHHHHHHH
Q 000522 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLL---YTQVKFAFVSG 424 (1445)
Q Consensus 349 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~~lL---~~~lg~a~l~~ 424 (1445)
++...+...+|+|.++++...++....|++.|.++.|++.+...+ ..+..+...++.++.++.++ .+.+.+.++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l-- 204 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT-- 204 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Confidence 999999999999999999988888888999999999999988765 33445555555544443332 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1445)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1445)
+++.+++.+..++.+++.+..++..+..++..+.+.|.++||++||.|+.|+.+.+++.+..++..+...+.....++.
T Consensus 205 -~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 205 -CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455677888888888888888999999999999999999999999999998876544444444444444443
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhCC--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000522 505 VFFWATT--PTLFSLFTFGLFALMGH--------QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLG 574 (1445)
Q Consensus 505 ~~~~~~~--~~~~~~~~f~~~~~~~~--------~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~ 574 (1445)
..+.... ...+.++++|.+.+..+ .++++.+++.+........++..+...+..+..+.+|.+||.+.++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222222 22345677888877653 5788888876655444445566666678899999999999999997
Q ss_pred CCCcchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHH
Q 000522 575 CSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL 654 (1445)
Q Consensus 575 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll 654 (1445)
.++..+.. . .... . +....|+++|++|+|+..++ .++|+|+||+|++||+++|+||||||||||+
T Consensus 364 ~~~~~~~~-~-~~~~---------~-~~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl 428 (1466)
T PTZ00265 364 RKPLVENN-D-DGKK---------L-KDIKKIQFKNVRFHYDTRKD---VEIYKDLNFTLTEGKTYAFVGESGCGKSTIL 428 (1466)
T ss_pred CCCCCCCC-C-CCcc---------C-CCCCcEEEEEEEEEcCCCCC---CceeccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 65321110 0 0000 0 11136999999999975322 3469999999999999999999999999999
Q ss_pred HHHhcCccCCCeEEEEc-C-------------eEEEEcCCCCCCCccHHHHHhcCCC-----------------------
Q 000522 655 NSILGEMMLTHGSIHAS-G-------------SIAYVPQVPWILSGTIRDNILFGKN----------------------- 697 (1445)
Q Consensus 655 ~~l~g~~~~~~G~i~~~-~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~----------------------- 697 (1445)
++|+|.++|++|+|.++ | +||||+|+|.+|++||+|||.+|..
T Consensus 429 ~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1466)
T PTZ00265 429 KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENK 508 (1466)
T ss_pred HHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccc
Confidence 99999999999999994 3 4899999999999999999998741
Q ss_pred -----------------------------------CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 698 -----------------------------------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 698 -----------------------------------~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.+++...++++.+++++.+..+|+|++|.+|++|.+|||||||||
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi 588 (1466)
T PTZ00265 509 NKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588 (1466)
T ss_pred cccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHH
Confidence 223567778888899999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc--CCceEEEEccCchhhhhCCEEEEEeCC-----------
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAISAADMVVVMDKG----------- 809 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~--~~~t~ilvth~~~~l~~~d~i~~l~~G----------- 809 (1445)
+||||++++|+|||||||||+||+++++.+.+. +.. +. +|+|+|+|||+++.+..||+|++|++|
T Consensus 589 aIARAll~~P~ILlLDEpTSaLD~~se~~i~~~-L~~-~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~ 666 (1466)
T PTZ00265 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKT-INN-LKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDII 666 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHH-HhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccc
Confidence 999999999999999999999999999988876 433 32 479999999999999999999999986
Q ss_pred ------------------------------------EEEEecCHhHHHh-ccccCcccccccchhhhhh-----hhhh--
Q 000522 810 ------------------------------------QVKWIGSSADLAV-SLYSGFWSTNEFDTSLHMQ-----KQEM-- 845 (1445)
Q Consensus 810 ------------------------------------~i~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~-- 845 (1445)
+|+++|+++|+++ .++.+..+.+......... ....
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~ 746 (1466)
T PTZ00265 667 GEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDM 746 (1466)
T ss_pred cccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccc
Confidence 5999999999997 4555554432211000000 0000
Q ss_pred hccc--cch-h---hhhhh---hhcc------cccCCchh-hHHHHH------HHH-hcCc-c--chhhHHHHHhhhhHH
Q 000522 846 RTNA--SSA-N---KQILL---QEKD------VVSVSDDA-QEIIEV------EQR-KEGR-V--ELTVYKNYAKFSGWF 899 (1445)
Q Consensus 846 ~~~~--~~~-~---~~~~~---~~~~------~~~~~~~~-~~~~~~------e~~-~~g~-v--~~~~y~~y~~~~g~~ 899 (1445)
+... ... . .+... .+.. .....++. .+...+ +.. +... . .+..+..++....+.
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1466)
T PTZ00265 747 KSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD 826 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH
Confidence 0000 000 0 00000 0000 00000000 000000 000 0000 1 111122233222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhhcccCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 900 ITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTL 978 (1445)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~l 978 (1445)
.++.++++++..++....++.++.+.+.... .........|.+++++++++..++.+++.++..+.+.+...+++.++
T Consensus 827 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~l 905 (1466)
T PTZ00265 827 -VTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRL 905 (1466)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233444445555555666666542211 00111234567777778888888889999999999999999999999
Q ss_pred HHHHhcCccccccc--CChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 979 LTKIVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056 (1445)
Q Consensus 979 l~~ll~~p~~ff~~--~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~ 1056 (1445)
+++++++|++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++++..|.++++++|+.++.....
T Consensus 906 f~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 985 (1466)
T PTZ00265 906 FENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVF 985 (1466)
T ss_pred HHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 8899999999999999999888888888888888877777777778877666655544332221
Q ss_pred HHHHH--HHHHHHHH-------------HHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1057 FFYRS--TSRELRRL-------------DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121 (1445)
Q Consensus 1057 ~~y~~--~sr~l~~l-------------~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~ 1121 (1445)
....+ ..++.++. +.+..+.....+.|+++|++|||+|+.|+++.+++.+..+...+........
T Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1466)
T PTZ00265 986 AIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLV 1065 (1466)
T ss_pred HHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111111 1222345667899999999999999999999999999988887766655444
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000522 1122 SLWLSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1200 (1445)
Q Consensus 1122 ~~wl~~~l~~l~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~ 1200 (1445)
..++....+.+..+...++..+ ..+. ..+..+.|.+..++.+.+.....+..+...+.+++.+..|.+|+.+++
T Consensus 1066 ~~~~~~~~~~~~~~~~~~~~~~G~~lv-----~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll 1140 (1466)
T PTZ00265 1066 NSMLWGFSQSAQLFINSFAYWFGSFLI-----RRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLI 1140 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333322221111111 1111 123456666655554444444456778888999999999999999999
Q ss_pred cCCcccccc-CCCCC--CCCCCCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 000522 1201 DVPQEELCG-YQSLS--PDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1276 (1445)
Q Consensus 1201 ~~~~e~~~~-~~~~~--~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~ 1276 (1445)
+.+++.... ....+ ...+..|.|+|+||+|+|++. ..+||+|+||+|+|||++||||+||||||||+++|+|+|+|
T Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1141 IRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred CCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 876542111 11111 012346889999999999743 34799999999999999999999999999999999999999
Q ss_pred ------------------------------------------------------CCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1277 ------------------------------------------------------CGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1277 ------------------------------------------------------~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++|+|+|||+||+++++++||++|+|
T Consensus 1221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1300 (1466)
T PTZ00265 1221 KNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI 1300 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccE
Confidence 69999999999999999999999999
Q ss_pred EcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1303 VPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
|||||+||+|||||||.++. +.+|+|+++|++.++++++|.++ ||||.|||+|.+|||||||||||||||+|+|+||
T Consensus 1301 V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~IL 1380 (1466)
T PTZ00265 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKIL 1380 (1466)
T ss_pred eCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999884 47999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeC----CeE-eeecCCCCC
Q 000522 1380 CLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDH----GHL-PHCGCAAAP 1442 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~----G~v-vE~G~p~~~ 1442 (1445)
|||||||+||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+|+
T Consensus 1381 LLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1381 LLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 9999999999999999999999873 69999999999999999999999999 995 599999886
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-87 Score=799.39 Aligned_cols=546 Identities=26% Similarity=0.358 Sum_probs=441.8
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFA 964 (1445)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~ 964 (1445)
+...+.|.+.-.+++...+++ .++......+-+.++...++.... ............+..++.++.+++..++.+++.
T Consensus 135 ~~rl~~l~~~~~~~l~~a~~~-l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~ 213 (716)
T KOG0058|consen 135 LKRLLGLLKPEWKWLVAAFVL-LLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQ 213 (716)
T ss_pred HHHHHHHhchhHHHHHHHHHH-HHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544444443322 223333344445555444332211 111122233455667777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH-
Q 000522 965 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLL- 1043 (1445)
Q Consensus 965 ~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~- 1043 (1445)
+.+.+...+++..+|++++++.++|||.+.+|++++|++.|...+.+.++..+...+.+.+..++.+..+++.+|-+.+
T Consensus 214 ~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv 293 (716)
T KOG0058|consen 214 YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLV 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888886543
Q ss_pred --HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1044 --LLVPFW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120 (1445)
Q Consensus 1044 --~~~pl~-~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~ 1120 (1445)
+.+|++ ++...+.++|++.+++.+. +-+.......|.+++++|||+|+.|+...++|.+.+++..+...+...
T Consensus 294 ~~i~~P~v~~~~~~yG~~~rklS~~~Q~----a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 294 TLIVVPIVALVAKIYGKYLRKLSKQTQD----ALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 3444555666666666654 344456778999999999999999999999999888877666544333
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000522 1121 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1200 (1445)
Q Consensus 1121 ~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~ 1200 (1445)
..-.+....++...+.... +..++.+ ....+.+++|.+...+.|...+...+.++...++++.+..+|.+|++|++
T Consensus 370 a~~~f~~~~~~~~~~~~~s---iL~~Gg~-Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLS---ILFYGGH-LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HhhHhHhHHHHHHhHHHHH---HHHhccc-hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 3222222222333221111 1111111 12246678999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCCCCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 000522 1201 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279 (1445)
Q Consensus 1201 ~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G 1279 (1445)
|.+|.-.... ...|. ..+|.|+|+||+|+||.. ..+||||+||+|+|||.||+||||||||||++++|+|+|+|++|
T Consensus 446 dr~P~i~~~G-~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 446 DRKPRIPLTG-TLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccCCCCCCCC-ccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 9877542221 11222 568999999999999754 34799999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCC
Q 000522 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1356 (1445)
Q Consensus 1280 ~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~ 1356 (1445)
+|++||+||++++++.||++|++|.|||+||+|||||||.++. ..+||||.+|.++++.++||.++ |+||.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 9999999999999999999999999999999999999998875 46899999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeee
Q 000522 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHC 1436 (1445)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~ 1436 (1445)
+|||||||||||||||+|||+|||||||||+||.++|..||++|.+..+++|||+|||||+||+.+|+|+|+++|+|+|.
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 000522 1437 GCAAAP 1442 (1445)
Q Consensus 1437 G~p~~~ 1442 (1445)
|+|+|+
T Consensus 684 G~h~eL 689 (716)
T KOG0058|consen 684 GTHDEL 689 (716)
T ss_pred ccHHHH
Confidence 999987
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-79 Score=765.03 Aligned_cols=528 Identities=27% Similarity=0.388 Sum_probs=444.7
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000522 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1445)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ 984 (1445)
++..++.+....++++......|..-..............+++.+++..++.+++.+.+...+.|....+-.++++++++
T Consensus 160 ~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~ 239 (709)
T COG2274 160 LLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLR 239 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 34555666666677777776666432222222333334456677788889999999999999999999999999999999
Q ss_pred CcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 000522 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIY----SKLQFFYR 1060 (1445)
Q Consensus 985 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~----~~i~~~y~ 1060 (1445)
.|++||.++++|++++|+ +|++.|.+.+...+...+..+...+..++++.+.+|.++++.+...+++ ...+.+.+
T Consensus 240 Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~ 318 (709)
T COG2274 240 LPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR 318 (709)
T ss_pred CcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5788888888877777777776666667777777666544433333322 33344444
Q ss_pred HHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000522 1061 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFI 1140 (1445)
Q Consensus 1061 ~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~ 1140 (1445)
+..++. .+..+...++..|++.|+.|||+.+.|.++..++++..++..+..+.......|.+....++..+...++
T Consensus 319 ~~~~~~----~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~i 394 (709)
T COG2274 319 RKTRKL----IEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLI 394 (709)
T ss_pred HHHHHH----HHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 3344556789999999999999999999999999999999999999888888887777666665433322
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCC
Q 000522 1141 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1220 (1445)
Q Consensus 1141 ~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~ 1220 (1445)
..+.+... ..+..+.|.+....+....+.+++..++..|++++....+.+|+.+.++.|+|+..+. .+...|+.+
T Consensus 395 L~~G~~lV----l~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~-~~~~~~~~~ 469 (709)
T COG2274 395 LWFGAILV----LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK-TLIHLPKLQ 469 (709)
T ss_pred HHHHHHHH----hcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-ccccccccC
Confidence 22221110 1345678888888888999999999999999999999999999999999999864332 134456778
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
|.|+|+||+|+|+++.+++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++++.+|++|
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1301 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1301 ~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
+|||||++||+|||||||..++. .+|||+++|++.+|++++|+++ ||||.+||+|.||||||||||+||||+++||+
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 99999999999999999998875 4679999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||||||||||++||+.|++.+.+..++||+|+||||++++++||||+|||+|+|+|.|+|+|+
T Consensus 630 ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~el 694 (709)
T COG2274 630 ILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEEL 694 (709)
T ss_pred EEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-75 Score=740.92 Aligned_cols=527 Identities=26% Similarity=0.386 Sum_probs=424.3
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000522 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1445)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~ 985 (1445)
++.++........++++....+... ........+...++++.++..++.++..+...+.+.+...+++.++++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 21 LLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444555555555554444321 01112223344455555566666667777777778999999999999999999
Q ss_pred cccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1445)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1065 (1445)
|+++|++++.|++++|+++|++.++..+......+...++.+++.++++....|.+.+++.....++......+.+..+.
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888775555556667777777777777766555544444444444444444466
Q ss_pred HHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000522 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1445)
Q Consensus 1066 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v 1145 (1445)
..+....+.+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG 258 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677788999999999999999999999988888888777766665444444433333333333322222111111
Q ss_pred HhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEE
Q 000522 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1445)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1445)
... ..+..+.|.+...+.+...+..++..+...+..++....|.+|+.++.+.+++...+... ..+..|.|+|
T Consensus 259 ~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~I~f 331 (567)
T COG1132 259 FLV----LSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKDTIGSIEF 331 (567)
T ss_pred HHH----HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCCCCCeEEE
Confidence 110 123356888999999999999999999999999999999999999999986653221111 3455688999
Q ss_pred EEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcC
Q 000522 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1445)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1445)
+||+|+|++ .+++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|.|||+||++++.++||++|++|||
T Consensus 332 ~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Q 410 (567)
T COG1132 332 ENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410 (567)
T ss_pred EEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcc
Confidence 999999975 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1306 SPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1306 dp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
||+||+|||||||+++.+ .+|||+++|++.++++|+++++ ||||.+||+|.+||||||||+|||||++|+|+|||||
T Consensus 411 d~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999976 6999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||++|++||+.|++.+++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+|+
T Consensus 491 EaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEEL 550 (567)
T ss_pred ccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999988889999999999999999999999999999999999886
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-75 Score=739.32 Aligned_cols=549 Identities=19% Similarity=0.231 Sum_probs=422.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 889 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1445)
Q Consensus 889 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~ 967 (1445)
++.|.+...+..+. .+++.++...+....++.+.+..+.... .........++.+++++.++..++.+++.+.....+
T Consensus 13 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (588)
T PRK11174 13 LKQQSKPAKRWLNL-SILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAG 91 (588)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455543333222 2234444555555556666555542110 011111223344455566667777788888888899
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 000522 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1445)
Q Consensus 968 ~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1047 (1445)
.+...+++.++++++++.|.++|++.++|++++|+++|++.+++.+...+..++..++..++.++++.+.+|.+.++++.
T Consensus 92 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 171 (588)
T PRK11174 92 QHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG 171 (588)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888777777777777777777777777766554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000522 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127 (1445)
Q Consensus 1048 l~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1127 (1445)
...+...+...+.+..++..+...+..+.+.+.+.|.++|+++||+|++|+.+.+++.+..++..+..........+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK11174 172 TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSA 251 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444556677889999999999999999999999999998888877776655544444444
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcCCCCCCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000522 1128 RLQLLAAFIISFIA-TMAVIGSRGNLPATF----STPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1202 (1445)
Q Consensus 1128 ~l~~l~~~~~~~~~-~~~v~~~~~~~~~~~----~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~ 1202 (1445)
...++..+.+.++. ...... .+....+. .+.....+++.++..+..++..+...+.++.....+.+|+.++.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 252 VLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44333332221111 111110 11111111 1222233344566677888999999999999999999999999987
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Q 000522 1203 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282 (1445)
Q Consensus 1203 ~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1282 (1445)
++++..... .+.+.+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|+| |++|+|.
T Consensus 331 ~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 331 PLAHPQQGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred CCcccCCCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 664321111 11111234679999999888654 57999999999999999999999999999999999999 9999999
Q ss_pred ECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCC
Q 000522 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFS 1359 (1445)
Q Consensus 1283 IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS 1359 (1445)
+||+|+++++.+++|++|+||||||++|+|||||||.+++ +.+|+|+++|++.|+++++++++ |+||.+||+|.+||
T Consensus 408 i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 408 INGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred ECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999885 58999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCC
Q 000522 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1360 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p 1439 (1445)
|||||||+||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~ 567 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDY 567 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCC
Q 000522 1440 AAP 1442 (1445)
Q Consensus 1440 ~~~ 1442 (1445)
+++
T Consensus 568 ~eL 570 (588)
T PRK11174 568 AEL 570 (588)
T ss_pred HHH
Confidence 876
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=748.60 Aligned_cols=528 Identities=25% Similarity=0.356 Sum_probs=426.6
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000522 904 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 983 (1445)
Q Consensus 904 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll 983 (1445)
.+++.++........+++.....+..............+.+++++.++..++..++.+.+.+.+.+...+++++++++++
T Consensus 166 ~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll 245 (711)
T TIGR00958 166 AFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLL 245 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666677766655532211111112223344555566677777888888889999999999999999999
Q ss_pred cCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 984 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS 1063 (1445)
Q Consensus 984 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~s 1063 (1445)
+.|++||+++++|+++||+++|++.+++.+...+..++..++.+++.++++.+.+|.+.++++....+...+.+.+.+..
T Consensus 246 ~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~ 325 (711)
T TIGR00958 246 RQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325 (711)
T ss_pred cCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888888888887766554444444444444444444
Q ss_pred HHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHH
Q 000522 1064 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS---LWLSLRLQLLAAFIISFI 1140 (1445)
Q Consensus 1064 r~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~---~wl~~~l~~l~~~~~~~~ 1140 (1445)
++..+...+..+...+++.|+++|+++||+|++|+++.+++.+..++..+......... .|....+..+..+++..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 405 (711)
T TIGR00958 326 QLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYY 405 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556667899999999999999999999999999998888776655443322 232222222222222111
Q ss_pred HHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCC
Q 000522 1141 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1220 (1445)
Q Consensus 1141 ~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~ 1220 (1445)
....+. .+..+.|.+..++.|...+..++..+...+.++.++..+.+|+.++++.+++...... ...++..
T Consensus 406 g~~lv~-------~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~ 476 (711)
T TIGR00958 406 GGQLVL-------TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAPLNLE 476 (711)
T ss_pred HHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCCCCCC
Confidence 111121 3456788888899999999999999999999999999999999999987665322111 1223557
Q ss_pred ccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcc
Q 000522 1221 GLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1445)
|.|+|+||+|+|++. .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 889999999999753 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1300 FAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1300 i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
|++|||||++|+|||||||.++. ..+|+++++++++++++++++++ |+||.+||+|.+||||||||||||||++++|
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999774 46899999999999999999999 9999999999999999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+|+
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred CEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHH
Confidence 9999999999999999999999 344589999999999999999999999999999999999876
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-74 Score=741.51 Aligned_cols=527 Identities=21% Similarity=0.230 Sum_probs=424.4
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000522 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1445)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~ 985 (1445)
++.++........++.+....+..-..........++.+++++.++..++.+++.+.....+.+...+++..+++++++.
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 222 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL 222 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444455555556655555543211111111222344555666667788888888899999999999999999999999
Q ss_pred cccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1445)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1065 (1445)
|++||++.++|++++|++ |++.+.+.+...+...+..+...++.++++++.+|.++++++.+.+++..+.....+..+.
T Consensus 223 ~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 301 (686)
T TIGR03797 223 PVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVR 301 (686)
T ss_pred CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 7888888877766666655555566666666777766554444333333333333332233
Q ss_pred HHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000522 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1445)
Q Consensus 1066 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v 1145 (1445)
..+...+..+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.....+.|.......+..+...++..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556789999999999999999999999999999999988888887777777666555544332222211111
Q ss_pred HhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEE
Q 000522 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1445)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1445)
... ..+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|..... . ...+..|.|+|
T Consensus 382 ~lv----~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~--~~~~~~~~I~~ 454 (686)
T TIGR03797 382 SLL----GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-T--DPGKLSGAIEV 454 (686)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-C--CCCCCCceEEE
Confidence 100 1244678888888888889999999999999999999999999999998776542211 1 11234578999
Q ss_pred EEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcC
Q 000522 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1445)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1445)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||
T Consensus 455 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 534 (686)
T TIGR03797 455 DRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534 (686)
T ss_pred EEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEcc
Confidence 99999998766789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000522 1306 SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383 (1445)
Q Consensus 1306 dp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDE 1383 (1445)
||.+|+|||||||.++++.+|+++++|++.++++++++++ |+||.+||+|.+|||||||||+||||++++|+||||||
T Consensus 535 ~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE 614 (686)
T TIGR03797 535 NGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614 (686)
T ss_pred CCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999988778999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1384 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1384 aTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||+||++||+.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|+|+++
T Consensus 615 pTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 615 ATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred CccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999886 6899999999999999999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=742.15 Aligned_cols=529 Identities=22% Similarity=0.299 Sum_probs=429.2
Q ss_pred HHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000522 907 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986 (1445)
Q Consensus 907 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p 986 (1445)
+.++..+.....++......+.............++..++++.++..++.+++.++....+.+...+++.++++++++.|
T Consensus 162 ~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~ 241 (710)
T TIGR03796 162 AGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLP 241 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444445555566666555432111111112233445555666777888888899999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1066 (1445)
Q Consensus 987 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l 1066 (1445)
++||++.++|++++|++.| +.+.+.+...+...+..++.+++.++++++.+|+++++.+...+++..+...+.+..+..
T Consensus 242 ~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~ 320 (710)
T TIGR03796 242 VRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDA 320 (710)
T ss_pred HHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 568877777777777777777777777777777776655554444444444444444444
Q ss_pred HHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1146 (1445)
Q Consensus 1067 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~ 1146 (1445)
.+......+...+++.|+++|+.+||++|+|+.+.+++.+..++..+..+.......|.......+..+...++..+...
T Consensus 321 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~ 400 (710)
T TIGR03796 321 NRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGL 400 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556678899999999999999999999999999988888877777666666666555555444322221111111
Q ss_pred hhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccC----C-CCCCCCCCCc
Q 000522 1147 GSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGY----Q-SLSPDWPFQG 1221 (1445)
Q Consensus 1147 ~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~----~-~~~~~wp~~g 1221 (1445)
. ...+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|..... . ...+.++..|
T Consensus 401 ~----v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~ 476 (710)
T TIGR03796 401 R----VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSG 476 (710)
T ss_pred H----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCC
Confidence 0 01244678888888899999999999999999999999999999999998876642211 0 0111134568
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 99999999999876678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1302 VVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1302 ~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
||||||++|+|||||||.+++ ..+|+++++|++.++++++++++ |+||.+||+|.+|||||||||+||||++++|+|
T Consensus 557 ~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 557 MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999998875 57899999999999999999998 999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+|+|.|+|+++
T Consensus 637 liLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 637 LILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred EEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999987 58999999999999999999999999999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-73 Score=736.80 Aligned_cols=545 Identities=24% Similarity=0.320 Sum_probs=426.4
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1445)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~ 965 (1445)
+..+..|++...+.+ ...++..++..+.....++++..+.+..-..........+..+++++.++..++.+++.++...
T Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 144 LLKFIPLITRQKKLI-VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444554333322 2233444555556666777777776643211111112223334455556677788888888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 000522 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1445)
Q Consensus 966 ~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1445)
.+.+...+++.++++++++.|+.||++.++|++++|++ |.+.+.+.+...+...+..+..+++.++++.+.+|.+++++
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 301 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999998 88888776665555555555555555555666666655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000522 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1445)
Q Consensus 1046 ~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1125 (1445)
+..++++..+...+.+..++..+......+...+++.|+++|+.+||+||.|+.+.+++.+..+...+..+.......+.
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444455566777889999999999999999999999999888887777666554444333
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000522 1126 SLRLQLLAA---FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1202 (1445)
Q Consensus 1126 ~~~l~~l~~---~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~ 1202 (1445)
.....++.. +++.+++...+. .+..+.|.+..+..+...+..++..+...+.++.....+++|+.++.+.
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~-------~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVM-------RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333222222 222222222221 3456788888888999999999999999999999999999999999988
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Q 000522 1203 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282 (1445)
Q Consensus 1203 ~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1282 (1445)
++|..... .....++..|.|+|+||+|+|++ .+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|+
T Consensus 455 ~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 455 DSEFINKK-KRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred CCcccccc-cccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 77643221 11123455789999999999974 35799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCC--CCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCC
Q 000522 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1358 (1445)
Q Consensus 1283 IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~--~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~L 1358 (1445)
+||+|+++++++++|++|+||||||++|+|||||||.++ ...+|++++++++.++++++++++ ||||.++|+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 999999999999999999999999999999999999987 357899999999999999999998 9999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecC
Q 000522 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1359 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~ 1438 (1445)
||||||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||++++..||+|+||++|+++|.|+
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999874 7899999999999999999999999999999999
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
|+++
T Consensus 692 ~~~L 695 (708)
T TIGR01193 692 HDEL 695 (708)
T ss_pred HHHH
Confidence 9875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-73 Score=732.67 Aligned_cols=530 Identities=23% Similarity=0.311 Sum_probs=423.8
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000522 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1445)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~ 985 (1445)
++.++..+.....++.++...+.............+..+++++.++..++.+++.++....+.+...+++..+++++++.
T Consensus 154 ~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 233 (694)
T TIGR03375 154 IASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGL 233 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444455555566666665553211111111122333444455667778888888999999999999999999999999
Q ss_pred cccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1445)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1065 (1445)
|++| ++.++|++++|+ +|++.+.+.+...+...+..++.++..++++.+.+|.++++.+..++++..+..++.+..++
T Consensus 234 ~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 311 (694)
T TIGR03375 234 RMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSR 311 (694)
T ss_pred Cccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 788999999999 79999999887776666666666666666666677766554433333333333333333344
Q ss_pred HHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000522 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1445)
Q Consensus 1066 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v 1145 (1445)
..+...+..+...+++.|+++|+.+||+|++|+.+.+++.+..++..+..+.....+.+.....+++..+...++..+..
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456677789999999999999999999999999999888887777766555555444444433322111111111
Q ss_pred HhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEE
Q 000522 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1445)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1445)
.. ...+..+.|.+..++.+...+..++..+...+.++.....+.+|+.++++.++|...... .....+..|.|+|
T Consensus 392 ~~----v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~-~~~~~~~~~~I~~ 466 (694)
T TIGR03375 392 YL----ISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR-FLHRPRLQGEIEF 466 (694)
T ss_pred HH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CCCCCCccceEEE
Confidence 10 012456788888889999999999999999999999999999999999988776422111 1111234678999
Q ss_pred EEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcC
Q 000522 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1445)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1445)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++++++|++++||||
T Consensus 467 ~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 467 RNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred EEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECC
Confidence 99999998666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1306 SPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1306 dp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
||++|+|||||||.++++ .+|++++++++.++++++++++ |+||.+||+|.+|||||||||+||||++++|+|||||
T Consensus 547 ~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred ChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998865 7999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+++|.|+|+|+
T Consensus 627 E~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 999999999999999999998899999999999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=718.21 Aligned_cols=528 Identities=23% Similarity=0.339 Sum_probs=417.8
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYST--SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 982 (1445)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~--~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~l 982 (1445)
+++.++........++++....+........... ..++.+++++.++..++.+++.+.....+.+...+++.++++++
T Consensus 29 ~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 108 (592)
T PRK10790 29 VLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAA 108 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677777666532111111111 11122344444555666777777888888999999999999999
Q ss_pred hcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 983 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062 (1445)
Q Consensus 983 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~ 1062 (1445)
++.|.++|++.+.|++++|+++|++.+++.+...+..++..+..+++.++++.+.+|++.++++..+.+...+...+.+.
T Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~ 188 (592)
T PRK10790 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188 (592)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888877777777777777777665443322222111222222222
Q ss_pred HHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHH
Q 000522 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL-SLRLQLLAAFIISFIA 1141 (1445)
Q Consensus 1063 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~l~~~~~~~~~ 1141 (1445)
.+...+......+.+..++.|+++|+.+||+||.++++.+++.+..+...+..+.....+.+. .....++..++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (592)
T PRK10790 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLL 268 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333455677889999999999999999999999999887777666655443333222 2222222222111111
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCc
Q 000522 1142 TMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQG 1221 (1445)
Q Consensus 1142 ~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g 1221 (1445)
+ +.+. ...+..+.|.+..++.+...+..++..+...+.++++...+.+|+.++.+.++++.... ..++..+
T Consensus 269 ~--~~~~---~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~ 339 (592)
T PRK10790 269 M--LFGF---SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND----DRPLQSG 339 (592)
T ss_pred H--HHHH---HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC----ccCCCCC
Confidence 1 1111 11345678888888899999999999999999999999999999999988765432111 1233457
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++++.+|++|+
T Consensus 340 ~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 89999999999753 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1302 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1302 ~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
||||||.+|+||||+||.+++..+|++++++++++|++++++++ ||||.++|+|.+|||||||||+||||++++|+||
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999888999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1380 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+++
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999998889999999999999999999999999999999999875
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-72 Score=714.46 Aligned_cols=530 Identities=25% Similarity=0.344 Sum_probs=429.2
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000522 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1445)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~ 985 (1445)
++.++..++.....++++...+.............+...++++.++..++.+++.+.....+.+....++..+++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33334444445555566655543211111111111222334455666677777777778888899999999999999999
Q ss_pred cccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1445)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1065 (1445)
|.++|++.+.|++++|+++|++.+.+.+...+..++..++.+++.++++.+.+|+++++++..+++...+.....+..++
T Consensus 112 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T PRK11176 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRN 191 (582)
T ss_pred CHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888888888877777777776555444444433333344443344
Q ss_pred HHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000522 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1445)
Q Consensus 1066 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v 1145 (1445)
..+......+.+.+++.|.++|+.+||+||.++.+.+++.+..+...+..........|.....+++..+...++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455677889999999999999999999999999999999988888777766666666666555433222221111
Q ss_pred HhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEE
Q 000522 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1445)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1445)
... ..+..+.|.+..++++...+..++..+...+.++.....+.+|+.++.+.+++...+.. ...|..+.|+|
T Consensus 272 ~~~----~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---~~~~~~~~i~~ 344 (582)
T PRK11176 272 FPS----VMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR---VIERAKGDIEF 344 (582)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc---CCCCCCCeEEE
Confidence 100 12456788888888999999999999999999999999999999999987655321111 11244568999
Q ss_pred EEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcC
Q 000522 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1445)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1445)
+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||
T Consensus 345 ~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 424 (582)
T PRK11176 345 RNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424 (582)
T ss_pred EEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEcc
Confidence 99999998766789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCccHHHhcCCCC--CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000522 1306 SPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1445)
Q Consensus 1306 dp~lF~gTIReNLdp~~--~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1445)
||++|+|||||||..+. .++|++++++++.++++++++++ ||||.+||+|.+|||||||||+||||++++|+||||
T Consensus 425 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ilil 504 (582)
T PRK11176 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_pred CceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999998753 47899999999999999999999 999999999999999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1382 DEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|+++
T Consensus 505 DEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999998889999999999999999999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=719.33 Aligned_cols=502 Identities=22% Similarity=0.283 Sum_probs=405.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHH
Q 000522 937 STSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1016 (1445)
Q Consensus 937 ~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~ 1016 (1445)
....+...|+.+++...+..++...++.+.+.|...+++.+.+++++|++++|||.+..|++..|++.|++.+.+.+...
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geK 148 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEK 148 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHH
Confidence 34556777778888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCc
Q 000522 1017 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKS 1096 (1445)
Q Consensus 1017 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~ 1096 (1445)
+..++..+...++.+++.++..|.+.++++++..+.......+.+..-.....+..+.+.--+...|++.+++|+.+|+.
T Consensus 149 vg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~g 228 (1228)
T KOG0055|consen 149 VGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNG 228 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 99999888888887777777777765554443333222222222222222222223333445678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHH
Q 000522 1097 EDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1176 (1445)
Q Consensus 1097 e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l 1176 (1445)
|+...++|.+.++...|...... .|.++.....-.++....+....++... ......++|.+..++...+.-...+
T Consensus 229 q~~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~l-i~~~~~~~g~v~~v~~~vl~g~~sL 304 (1228)
T KOG0055|consen 229 EKKEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTL-ILNGGYNGGDVITVFFSVLIGGMSL 304 (1228)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCceEEEEEeehhhhhhhh
Confidence 99999999999988887765432 3333333222222222222222222111 0112344555555555555555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCC-CccceeeeEEEeCCcEEEE
Q 000522 1177 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGI 1255 (1445)
Q Consensus 1177 ~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~-~~vL~~isl~I~~GekvgI 1255 (1445)
+.....+..+.++.+|..++.+.++..++...........-..+|.|+|+||+|+||... .++|+|+||+|++||.||+
T Consensus 305 gqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~val 384 (1228)
T KOG0055|consen 305 GQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVAL 384 (1228)
T ss_pred hccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEE
Confidence 777778888889999999999998765543111111111223579999999999997543 3799999999999999999
Q ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC-CCChHHHHHHHH
Q 000522 1256 VGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLE 1334 (1445)
Q Consensus 1256 vGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~ 1334 (1445)
||+|||||||++++|.|+|+|++|+|.|||.|+.+++.++||++||+|.|+|+||++||+|||.++. ..+++|+.+|++
T Consensus 385 VG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k 464 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK 464 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 468999999999
Q ss_pred HccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEe
Q 000522 1335 KCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1412 (1445)
Q Consensus 1335 ~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~I 1412 (1445)
.++.++++..+ |+||.+||+|.+||||||||+||||||+|+|+|||||||||+||+++|+.+|++|++..+|+|.|+|
T Consensus 465 ~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivV 544 (1228)
T KOG0055|consen 465 AANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVV 544 (1228)
T ss_pred HccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1413 AHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1413 aHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||+||+++|+|+||++|+|+|.|+|+|+
T Consensus 545 aHRLStIrnaD~I~v~~~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 545 AHRLSTIRNADKIAVMEEGKIVEQGTHDEL 574 (1228)
T ss_pred eeehhhhhccCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999987
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-71 Score=653.19 Aligned_cols=497 Identities=24% Similarity=0.329 Sum_probs=424.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHH
Q 000522 938 TSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL 1017 (1445)
Q Consensus 938 ~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l 1017 (1445)
...+++.++++.++..++.+.+......++.++...+|.++++++.+.+..+-+..|+|++....+..++.++..+...+
T Consensus 39 l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryL 118 (559)
T COG4988 39 LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYL 118 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888888888888889999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHhhcchhHhHHHHhhccHHHHH
Q 000522 1018 NILLANFVGLLGIAVVLSYVQVF---FLLLLVPFWFIYSKLQF-FYR-STSRELRRLDSVSRSPIYASFTETLNGSSTIR 1092 (1445)
Q Consensus 1018 ~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~pl~~~~~~i~~-~y~-~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIr 1092 (1445)
..++.+.+..+.+++.+++..|. ++++..|++.++..+.. .-. ...++. .+...+.+||.|.++|+.|+|
T Consensus 119 Pq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~-----~~~~~ls~~FLD~LrGL~TLr 193 (559)
T COG4988 119 PQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQF-----SALARLSGHFLDRLRGLETLR 193 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHhcChHHHH
Confidence 88888887777777777666654 45556676665544322 211 122222 334456789999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHH
Q 000522 1093 AFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPI 1172 (1445)
Q Consensus 1093 af~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~ 1172 (1445)
+||..+...++..+..++..+..+....++.--+..+|++..+-+.++++.+.+...+. +..+.....+++..+-.+
T Consensus 194 ~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~---G~ltl~~~l~~LiLAPEf 270 (559)
T COG4988 194 AFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGE---GDLTLFAGLFVLILAPEF 270 (559)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999888889999998876666655554432221 233444445556666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcE
Q 000522 1173 VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQ 1252 (1445)
Q Consensus 1173 ~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~Gek 1252 (1445)
..++..+-..|.....+..+.+.+..+.+.|.+...........|....+++.+|++++|+++. ++++|+||+++|||+
T Consensus 271 f~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~ 349 (559)
T COG4988 271 FQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQL 349 (559)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcE
Confidence 8899999999999999999999999999887765332222223343445667779999998664 899999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCC-CChHHHHH
Q 000522 1253 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWS 1331 (1445)
Q Consensus 1253 vgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~ 1331 (1445)
+||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|+++++|||+|++|+|||||||.+++. .+|++|++
T Consensus 350 talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~ 429 (559)
T COG4988 350 TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIA 429 (559)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876 68999999
Q ss_pred HHHHccHHHHHHh-CCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEE
Q 000522 1332 VLEKCHVKEEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1410 (1445)
Q Consensus 1332 aL~~~~l~~~i~~-lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI 1410 (1445)
+++++++.++++. .||||.+||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||
T Consensus 430 al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl 509 (559)
T COG4988 430 ALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVL 509 (559)
T ss_pred HHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEE
Confidence 9999999999986 499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccChhHHhhcCEEEEEeCCeEeeecCCCCCC
Q 000522 1411 TIAHRISTVLNMDEILILDHGHLPHCGCAAAPN 1443 (1445)
Q Consensus 1411 ~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~~ 1443 (1445)
+||||++.+.++|+|+|||+|+++|.|+|+++.
T Consensus 510 ~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 510 VITHRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred EEEcChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 999999999999999999999999999999873
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=688.34 Aligned_cols=544 Identities=23% Similarity=0.277 Sum_probs=470.9
Q ss_pred chHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 267 PSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKL 346 (1445)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~ 346 (1445)
.+-++..++-|++.+.-..+..++..+++++.|++.+.++|.+-.+.+......+++++.+..++.+++.....|....+
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888999999999999999999999999998777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 000522 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSG 424 (1445)
Q Consensus 347 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i~~~lL~~~lg~a~l~~ 424 (1445)
+.|+...+...+|+|.+++|...++++++|++++.+. |.+.|.+++.. +..+...++-++....|. ..-+.-++++
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~-~ys~~L~li~ 299 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMF-LYSWKLTLIV 299 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999886 88889887543 334445555554444343 4444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1445)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1445)
++.+++.+.+..++.+.+++..++.++...++.+.+.|.++||++||..+-|+.+..++++.-.+.++...+........
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55566666778888899999999999999999999999999999999999999999999998888888888777776665
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhh
Q 000522 505 VFFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582 (1445)
Q Consensus 505 ~~~~~~~~~~--~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~ 582 (1445)
..+......+ +.+++||++.+.++.+|.|+.+++.++.+.+..|+..+.+.+..+.++.++.+|+.+.++.|..++..
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 5554443333 35689999999999999999999999999999999999999999999999999999999876543311
Q ss_pred hhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc
Q 000522 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~ 662 (1445)
.... ......+.|+++|++|.|..+++ ++|+|+||+|++||.++|||+||||||||+|+|+|.++
T Consensus 460 ~~~~-----------~~~~~~g~I~~~nvsf~y~~~~~----~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 460 KTLI-----------HLPKLQGEIEFENVSFRYGPDDP----PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred cccc-----------cccccCceEEEEEEEEEeCCCCc----chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 1000 01235678999999999986532 35999999999999999999999999999999999999
Q ss_pred CCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCCCh-hhHHHHHHHhcchHHHhhccCCCccccc
Q 000522 663 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISLMVGGDMAYIG 728 (1445)
Q Consensus 663 ~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~-~~~~~v~~~~~l~~d~~~~~~gd~t~vg 728 (1445)
|++|+|.+|| +|+||+|++.+|+|||||||.++.+... |+..++++..+.++++..+|.|++|.+|
T Consensus 525 p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 525 PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 9999999997 5999999999999999999999987644 7788888888999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeC
Q 000522 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1445)
Q Consensus 729 ~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~ 808 (1445)
|+|.+||||||||++||||++++|+|++|||||||||+++++.|.+++ .. ..+|+|+|+||||++.+++||+|+||++
T Consensus 605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~ 682 (709)
T COG2274 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL-LQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQ 682 (709)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HH-HhcCCeEEEEEccchHhhhccEEEEccC
Confidence 999999999999999999999999999999999999999999999984 33 6678999999999999999999999999
Q ss_pred CEEEEecCHhHHHhccccCcc
Q 000522 809 GQVKWIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 809 G~i~~~g~~~~~~~~~~~~~~ 829 (1445)
|+|+++|+++|+++..+.+.+
T Consensus 683 Gkiv~~gs~~ell~~~g~y~~ 703 (709)
T COG2274 683 GKIVEQGSHEELLAQGGLYAR 703 (709)
T ss_pred CceeccCCHHHHHHhcChHHH
Confidence 999999999999987665544
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-71 Score=704.52 Aligned_cols=530 Identities=25% Similarity=0.365 Sum_probs=445.1
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000522 906 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 985 (1445)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~ 985 (1445)
++.++..++..+.+++++...+.............+.++++++.++..++.+++.+.....+.+....+++.+++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~ 100 (571)
T TIGR02203 21 VAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGL 100 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555556666555443211111112223344566777777888888888899999999999999999999999
Q ss_pred cccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 986 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1445)
Q Consensus 986 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1065 (1445)
|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++++++.+|+++++++.+.++...+...+.+..++
T Consensus 101 ~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~ 180 (571)
T TIGR02203 101 PVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180 (571)
T ss_pred CHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888888888777666666666565666655566
Q ss_pred HHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000522 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1445)
Q Consensus 1066 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v 1145 (1445)
..+......++..+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...++.++..
T Consensus 181 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 260 (571)
T TIGR02203 181 ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIAL 260 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667788899999999999999999999999999999999988888777777766666655554432222211111
Q ss_pred HhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEE
Q 000522 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1445)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1445)
.. ...+..++|.+..++.++..+..++..+...+.++.....+.+|+.++.+.+++...... +. -+..+.|++
T Consensus 261 ~~----~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~--~~~~~~i~~ 333 (571)
T TIGR02203 261 FQ----AQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-AI--ERARGDVEF 333 (571)
T ss_pred HH----HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CC--CCCCCeEEE
Confidence 10 013456788899999999999999999999999999999999999999987665322111 11 124578999
Q ss_pred EEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcC
Q 000522 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1445)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1445)
+||+|+|++..+++|+|+||+|+|||+++|+|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++||||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999998766689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCccHHHhcCCCC--CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000522 1306 SPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1445)
Q Consensus 1306 dp~lF~gTIReNLdp~~--~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1445)
||++|+|||||||..++ +.+|++++++++++++++++.++ ||||.++|+|.+||||||||||||||++++|+|++|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999875 58999999999999999999998 999999999999999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1382 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1382 DEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|+++
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999998899999999999999999999999999999999998875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-71 Score=697.80 Aligned_cols=491 Identities=22% Similarity=0.288 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHH
Q 000522 945 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1024 (1445)
Q Consensus 945 ~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~ 1024 (1445)
+.++.++..++.++..+.....+.+...+++.++++++++.|+.+|++.++|++++|+++|++.+++.+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777788889999999999999999999999999999999999999999999999888888888888
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHH
Q 000522 1025 VGLLGIAVVLSYVQVFFLLLLVPFWF-IYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103 (1445)
Q Consensus 1025 ~~~l~~~~~~~~~~~~~~~~~~pl~~-~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~ 1103 (1445)
+.+++.++++++.+|.++++++..+. ++..+..++.+..+...+...++.+.+.+.+.|.++|+++||+||.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 88888888888888776654432222 22222233334434444444556677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000522 1104 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA-APIVSLLGNFLSS 1182 (1445)
Q Consensus 1104 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~-~~~~~~l~~li~~ 1182 (1445)
+.+..++..+..+.......+.....+++..+...++..+..... .+..+.|.+..++.|. ......+..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-----~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~ 300 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-----GGNAQPGALIALFVFAALAAFEALMPVAGA 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887776666665555555544433222211111111 1233455554444443 3334566677788
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCC
Q 000522 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAG 1262 (1445)
Q Consensus 1183 ~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSG 1262 (1445)
+.++.....|.+|+.++.+.+++........ ..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 301 ~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsG 378 (574)
T PRK11160 301 FQHLGQVIASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCG 378 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCcccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCC
Confidence 8888999999999999998776532111111 12345789999999999765567999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHH
Q 000522 1263 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEE 1341 (1445)
Q Consensus 1263 KSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~ 1341 (1445)
||||+++|.|+++|++|+|.+||+|+++++.+++|++|++|||||++|+|||||||.++. +.+|+++++++++++++++
T Consensus 379 KSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~ 458 (574)
T PRK11160 379 KSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKL 458 (574)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 4789999999999999999
Q ss_pred HHh-CCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHh
Q 000522 1342 VEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1420 (1445)
Q Consensus 1342 i~~-lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~ 1420 (1445)
+++ .||||.+||+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.
T Consensus 459 i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~ 538 (574)
T PRK11160 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE 538 (574)
T ss_pred HcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH
Confidence 985 4999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hcCEEEEEeCCeEeeecCCCCC
Q 000522 1421 NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1421 ~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||+|++|++|+++|.|+|+|+
T Consensus 539 ~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 539 QFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred hCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-71 Score=659.52 Aligned_cols=541 Identities=20% Similarity=0.224 Sum_probs=442.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1445)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~i 350 (1445)
.+.+..|+.+..+.++.++.......-|.++.+++|.+.. .+......-....+..++++.+++...+.+.....+.++
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888999999999999999998876 333223333455666778888899888888888899999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhhHhHHHHHHHHHHH
Q 000522 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVAL-YLLYTQVKFAFVSGLAIT 428 (1445)
Q Consensus 351 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~-~lL~~~lg~a~l~~~~~~ 428 (1445)
-..+...+|++.++...+.+++..+|++++.++.|++.+.+.+ .++.+..-+.++...++ +|++...-++.+. ++.+
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~-~i~~ 298 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVT-LIVV 298 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH-HHHh
Confidence 9999999999999999999999999999999999999998865 45666666666665444 3333333333322 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1445)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1445)
.+.+.+..+++++.++..++..++..+-.+...|.|++||+||+|+-|+...++..+.-++-.+..+|......+....+
T Consensus 299 P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~ 378 (716)
T KOG0058|consen 299 PIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGST 378 (716)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHH
Confidence 33344567777888888888888888889999999999999999999988877776654444444444444333332222
Q ss_pred HH--HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhc
Q 000522 509 AT--TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1445)
Q Consensus 509 ~~--~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~ 586 (1445)
.. ....++++.+|.|++.++.||++...+++.+-..+..++..+...++.++++..+.+|+.+|++.+..-+... .
T Consensus 379 ~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G--~ 456 (716)
T KOG0058|consen 379 NLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTG--T 456 (716)
T ss_pred HHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCC--c
Confidence 22 2235667888999999999999999999999999999999999999999999999999999997654322100 0
Q ss_pred CCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCe
Q 000522 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1445)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G 666 (1445)
..| ....+.|+|+|++|+|+.+++ .++|+|+||+|+|||.+|+||||||||||+.++|+.+|+|++|
T Consensus 457 ~~p----------~~~~G~IeF~~VsFaYP~Rp~---~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 457 LAP----------DHLQGVIEFEDVSFAYPTRPD---VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccc----------ccccceEEEEEeeeecCCCCC---chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 011 134578999999999998755 4559999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
+|.+|| +||+|.|+|.||++||+|||.+|.+ .++|+..++.+.+.-++.|..+|+|++|.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 999998 5999999999999999999999986 46788899999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEE
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~ 812 (1445)
.|||||||||||||||++||.||||||+|||||++.+. +.+.++.. ..+++|||+|+||++.+++||+|+++++|+++
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~-lVq~aL~~-~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY-LVQEALDR-LMQGRTVLVIAHRLSTVRHADQIVVIDKGRVV 681 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHH-HHHHHHHH-hhcCCeEEEEehhhhHhhhccEEEEEcCCeEE
Confidence 99999999999999999999999999999999999655 44554544 67789999999999999999999999999999
Q ss_pred EecCHhHHHhcc-ccCccc
Q 000522 813 WIGSSADLAVSL-YSGFWS 830 (1445)
Q Consensus 813 ~~g~~~~~~~~~-~~~~~~ 830 (1445)
|.|+++|+++.. +.+.++
T Consensus 682 E~G~h~eLl~~~~gly~~L 700 (716)
T KOG0058|consen 682 EMGTHDELLSKPNGLYAKL 700 (716)
T ss_pred ecccHHHHhhCcccHHHHH
Confidence 999999999876 344433
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-71 Score=637.23 Aligned_cols=488 Identities=23% Similarity=0.332 Sum_probs=408.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHh
Q 000522 947 IFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVG 1026 (1445)
Q Consensus 947 ~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~ 1026 (1445)
++++...+..++..........+.-..+|.++|+++...+..-..+...|+++||+..|++.+|+.+-..+...+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 34555556666666666777888889999999999999999999999999999999999999999999988888888888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHH
Q 000522 1027 LLGIAVVLSYVQVFFLLLLVPF-WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1105 (1445)
Q Consensus 1027 ~l~~~~~~~~~~~~~~~~~~pl-~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~ 1105 (1445)
.+++.+.+++.+|++++.+... ++....+...+.+..|...+.-...+..++++|.|.+.|....+.||.++.|.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 8888888877777765544333 333333344444555566555566788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000522 1106 EHVVLYQRTSYSELTASLWLSLRLQLLAAFIIS-FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL-SSF 1183 (1445)
Q Consensus 1106 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li-~~~ 1183 (1445)
+..+.+.+..........|....+.++.++++. .+...+.... .+..+.....+++..++.....+.-+. ..+
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~-----~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~ 300 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG-----AGALAQPGAALALLVIFAALEAFEPLAPGAF 300 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----CCCcchhHHHHHHHHHHHHHHHHhhhcchhH
Confidence 999999999999999999999998888876655 3333332111 111121122222222234444444444 667
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCH
Q 000522 1184 TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1263 (1445)
Q Consensus 1184 ~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGK 1263 (1445)
.++.+...|++|+.+..+.++|...+....+ -+.+ .++++||+|+|+.+.+++|+|+||++++||||||+|||||||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~--~~~~-~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFPDEQTA--TTGQ-ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCCccccC--Cccc-eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCH
Confidence 8889999999999999988777532211111 1122 799999999999888899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHH
Q 000522 1264 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEV 1342 (1445)
Q Consensus 1264 STLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i 1342 (1445)
||++++|.|.++|++|+|.++|.+++.++.+++|+.|++++|.+.+|+||+|+||...++ .||||+|++|+++||.+++
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987654 6999999999999999999
Q ss_pred HhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHh
Q 000522 1343 EAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1420 (1445)
Q Consensus 1343 ~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~ 1420 (1445)
++. ||+|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|||+|+||||+..+.
T Consensus 458 ~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred HhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCCeEeeecCCCCC
Q 000522 1421 NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1421 ~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
.||||+|||+|+++|+|+|.++
T Consensus 538 ~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhh
Confidence 9999999999999999999987
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=692.70 Aligned_cols=463 Identities=21% Similarity=0.266 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhH
Q 000522 948 FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGL 1027 (1445)
Q Consensus 948 l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~ 1027 (1445)
+.++..++.++..+.....+.+...+++.++++++++.|.+||++.++|++++|+++|++.+++.+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777888899999999999999999999999999999999999999999999888888888888777
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHH
Q 000522 1028 LGIAVVLSYVQVFFLLLLVPFWFIY-SKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1106 (1445)
Q Consensus 1028 l~~~~~~~~~~~~~~~~~~pl~~~~-~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~ 1106 (1445)
++.++++++..|.+.++++..+.++ .....++.+..+...+...+..+.+.+++.|+++|+++||+|++|+.+.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 7777777788877766554433332 222233344434444444456678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1107 HVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTET 1186 (1445)
Q Consensus 1107 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~ 1186 (1445)
..++..+..........+......++..+...++..+.... ...+..+.|.+...+.++..+..++..+...+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 297 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPA----VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQAL 297 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877766555444444333333332221111111100 01234567888888888888999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccccCC-CCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHH
Q 000522 1187 EKEMVSLERVLEYMDVPQEELCGYQ-SLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS 1265 (1445)
Q Consensus 1187 e~~~~sv~Ri~~~~~~~~e~~~~~~-~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKST 1265 (1445)
.+...+.+|+.++.+.++|...... .+...+|..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||||||||||
T Consensus 298 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 298 TRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKST 376 (529)
T ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999999987765321111 111123456789999999999754 46999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHh
Q 000522 1266 ILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEA 1344 (1445)
Q Consensus 1266 Ll~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~ 1344 (1445)
|+++|+|+|+|++|+|.+||+|++++ .+++|++++||||||++|+|||||||.+++ +.+|+++++|++.+++++++++
T Consensus 377 Ll~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~ 455 (529)
T TIGR02868 377 LLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRS 455 (529)
T ss_pred HHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 99999999999999999999999999 999999999999999999999999999875 4699999999999999999999
Q ss_pred C--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccCh
Q 000522 1345 V--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRI 1416 (1445)
Q Consensus 1345 l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl 1416 (1445)
+ ||||.+||+|.+||||||||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 456 lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 456 LPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 8 99999999999999999999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-70 Score=708.52 Aligned_cols=527 Identities=23% Similarity=0.325 Sum_probs=422.5
Q ss_pred HHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 000522 909 ILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 988 (1445)
Q Consensus 909 ~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ 988 (1445)
++........++.+....|..-..........+...++++.++..++.+++.++....+.+...+++.++++++++.|+.
T Consensus 149 ~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~ 228 (694)
T TIGR01846 149 LALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLG 228 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33444444555666655553211111112223344455566667788888889999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 989 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRR 1068 (1445)
Q Consensus 989 ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~ 1068 (1445)
||++.++|++++|+ +|++.+.+.+...+..++..++.++..++++++.+|.++++++..++++..+.....+..+...+
T Consensus 229 ~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~ 307 (694)
T TIGR01846 229 YFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVE 307 (694)
T ss_pred HcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 69999998887766666655555555566667777766555443333333322222222222222
Q ss_pred HHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000522 1069 LDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS 1148 (1445)
Q Consensus 1069 l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~ 1148 (1445)
...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.....+.+.....+++..+...++..+.....
T Consensus 308 ~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv 387 (694)
T TIGR01846 308 DKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLV 387 (694)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23344566778999999999999999999999999999998888887777666666666555554432222211111100
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEE
Q 000522 1149 RGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1228 (1445)
Q Consensus 1149 ~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nV 1228 (1445)
..+..+.|.+..+..+...+..++..+...+.++++...+.+|+.++++.++|...... ....+..|.|+|+||
T Consensus 388 ----~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~--~~~~~~~~~i~~~~v 461 (694)
T TIGR01846 388 ----IGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGL--AALPELRGAITFENI 461 (694)
T ss_pred ----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC--CCCCCCCCeEEEEEE
Confidence 12456788888888899999999999999999999999999999999988766422111 111123578999999
Q ss_pred EEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCc
Q 000522 1229 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF 1308 (1445)
Q Consensus 1229 s~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~ 1308 (1445)
+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|+++++|||||.
T Consensus 462 sf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~ 541 (694)
T TIGR01846 462 RFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541 (694)
T ss_pred EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe
Confidence 99998766789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccc
Q 000522 1309 LFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385 (1445)
Q Consensus 1309 lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaT 1385 (1445)
+|+|||||||..++ ..+|++++++++.++++++++++ ||||.++++|.+||||||||++||||++++|+||||||||
T Consensus 542 lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 542 LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99999999998865 57899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1386 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1386 S~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|+++
T Consensus 622 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999998889999999999999999999999999999999999775
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=691.48 Aligned_cols=534 Identities=19% Similarity=0.187 Sum_probs=420.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 270 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1445)
Q Consensus 270 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 348 (1445)
++...+.+++.++...++.++..++..++|++++.+++.+.. +.+....+.++++++++.++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888889999999999999999999999997642 2222233444555666677788888888888899999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHhhHhHHHHHHH
Q 000522 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSG 424 (1445)
Q Consensus 349 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~---lL~~~lg~a~l~~ 424 (1445)
++...+...+|+|.++++.....+.++|++.|.++.|++++.+... .+..++...+.++++++ .+.+.+++.+++.
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988889999999999999999998653 45555555444443333 3334444433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000522 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMK----TRSSEVKHLSTRKYL 500 (1445)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~----~R~~El~~~~~~~~~ 500 (1445)
+++...+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+ .|+.+.+..+.....
T Consensus 173 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 173 ---APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334556778888888999999999999999999999999999999988887744 444444443333323
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 501 DAWCVFFWATTPTLFSLFTFGLFALMGHQLDA---------AMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 571 (1445)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~---------~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~ 571 (1445)
......+.... . +.++.++.+.+. +.++. ..+|+++.+...+..|+..++..+..+.++.++.+||.+
T Consensus 250 ~~~~~~~~~~~-~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASIS-I-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHHH-H-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222111 1 122233333333 33443 345666677788899999999999999999999999999
Q ss_pred HhCCCCcchhhhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHH
Q 000522 572 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651 (1445)
Q Consensus 572 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 651 (1445)
+++.++.++.... ...+ ......|+++|++|.|+++ +++|+|+||++++|++++||||||||||
T Consensus 327 ~l~~~~~~~~~~~-~~~~----------~~~~~~i~~~~vsf~~~~~-----~~vL~~i~l~i~~G~~vaIvG~SGsGKS 390 (588)
T PRK11174 327 FLETPLAHPQQGE-KELA----------SNDPVTIEAEDLEILSPDG-----KTLAGPLNFTLPAGQRIALVGPSGAGKT 390 (588)
T ss_pred HHcCCCcccCCCc-cccC----------CCCCceEEEEeeEEeccCC-----CeeeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 9976543211000 0000 0123469999999987632 2359999999999999999999999999
Q ss_pred HHHHHHhcCccCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHh
Q 000522 652 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDIS 717 (1445)
Q Consensus 652 tll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~ 717 (1445)
||+++|+|++ |++|+|.++| +|+||||+||||++||||||.+|++ .++++++++++.|+++++++
T Consensus 391 TL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~ 469 (588)
T PRK11174 391 SLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLP 469 (588)
T ss_pred HHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHH
Confidence 9999999999 9999999987 5999999999999999999999964 89999999999999999999
Q ss_pred hccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhh
Q 000522 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797 (1445)
Q Consensus 718 ~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l 797 (1445)
.+|+|++|.|||+|.+|||||||||+||||++++|+|+||||||||||++++++|.+. +.. +.+++|+|+||||++.+
T Consensus 470 ~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~-~~~~~TvIiItHrl~~i 547 (588)
T PRK11174 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNA-ASRRQTTLMVTHQLEDL 547 (588)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEecChHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 444 55789999999999999
Q ss_pred hhCCEEEEEeCCEEEEecCHhHHHhccccCc
Q 000522 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 828 (1445)
Q Consensus 798 ~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 828 (1445)
+.||+|++|++|+|+++|+++|++++++.+.
T Consensus 548 ~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~ 578 (588)
T PRK11174 548 AQWDQIWVMQDGQIVQQGDYAELSQAGGLFA 578 (588)
T ss_pred HhCCEEEEEeCCeEeecCCHHHHHhcchHHH
Confidence 9999999999999999999999987655443
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-69 Score=686.76 Aligned_cols=532 Identities=24% Similarity=0.356 Sum_probs=421.5
Q ss_pred HHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000522 907 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986 (1445)
Q Consensus 907 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p 986 (1445)
+.++........++.+....+..-..........++.+++++.++..++.+++.++....+.+....++..+++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~ 105 (576)
T TIGR02204 26 ALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLS 105 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444555555555555544421101111112223344445555556666777788888899999999999999999999
Q ss_pred ccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1066 (1445)
Q Consensus 987 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l 1066 (1445)
.++|++...|++++|+++|++.+++.....+..++..++.+++.++++++..|++.++++...++...+...+.+..+..
T Consensus 106 ~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~ 185 (576)
T TIGR02204 106 PSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKL 185 (576)
T ss_pred HHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887777777777777777777777655444333333333333333333444
Q ss_pred HHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1146 (1445)
Q Consensus 1067 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~ 1146 (1445)
.+.....+....+++.|.++|+++||+|+.++++.+++.+..+...+..........|+......+..+...++..+...
T Consensus 186 ~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 265 (576)
T TIGR02204 186 SRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH 265 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566778899999999999999999999999999998888777766655555555544443332211111111110
Q ss_pred hhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEE
Q 000522 1147 GSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQ 1226 (1445)
Q Consensus 1147 ~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~ 1226 (1445)
. ...+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++.+.++|........+..+|..+.|+|+
T Consensus 266 ~----v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (576)
T TIGR02204 266 D----VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFE 341 (576)
T ss_pred H----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEE
Confidence 0 012445788888888899999999999999999999999999999999887654211111111223445789999
Q ss_pred EEEEEeCCCC-CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcC
Q 000522 1227 NVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1445)
Q Consensus 1227 nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1445)
||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|+||
T Consensus 342 ~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 342 QVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred EEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 9999997543 579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1306 SPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1306 dp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
||++|+|||||||.+++ ..+|++++++++++++.++++.+ |+||.++|+|.+||||||||++||||++++|+|||||
T Consensus 422 ~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD 501 (576)
T TIGR02204 422 DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD 501 (576)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe
Confidence 99999999999999865 46889999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||+||.+|++.+.+.+++..+++|+|+||||++.+..||+|++|++|+++|.|+|+++
T Consensus 502 Epts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 502 EATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred CcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHH
Confidence 999999999999999999998899999999999999999999999999999999998765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-69 Score=683.77 Aligned_cols=530 Identities=23% Similarity=0.297 Sum_probs=416.4
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000522 904 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 983 (1445)
Q Consensus 904 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll 983 (1445)
+++..++..+.....++++....+.... ......++.+++++.++..+..+.......+...+...++..+++++++
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISG---KGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666667665553221 1112222333333333333333333444444555555666679999999
Q ss_pred cCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 984 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS 1063 (1445)
Q Consensus 984 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~s 1063 (1445)
+.|..+|++.+.|++++|+++|++.+.+.+...+..++..++..++.++++.+..|+++++++.+++++..+...+.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877766666666666666666666677777766665555555555566666666
Q ss_pred HHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000522 1064 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM 1143 (1445)
Q Consensus 1064 r~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~ 1143 (1445)
++..+......+.+.+++.|.++|+.+||+||.++.+.+++.+..+...+........+.+.....+++..+...++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677888899999999999999999999999999998888877766655555554444443333222211111
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccE
Q 000522 1144 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1223 (1445)
Q Consensus 1144 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1223 (1445)
.... ...+..+.|.+..++.++..+..++..+...+.++..+..+.+|+.++.+.+++........+. -+..+.|
T Consensus 261 g~~~----v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~I 335 (588)
T PRK13657 261 GAAL----VQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL-GRVKGAV 335 (588)
T ss_pred HHHH----HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc-CCCCCeE
Confidence 1111 1134567888888888999999999999999999999999999999998765442111111111 1234689
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEE
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1445)
+|+||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||
T Consensus 336 ~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 414 (588)
T PRK13657 336 EFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414 (588)
T ss_pred EEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999743 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000522 1304 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1445)
Q Consensus 1304 pQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1445)
||||.+|+|||||||.+++ ..+|++++++++.++++++++++ |+||.++++|.+||||||||||||||++++|+|||
T Consensus 415 ~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili 494 (588)
T PRK13657 415 FQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494 (588)
T ss_pred ecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998874 46899999999999999999998 99999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1381 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1381 LDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||||+||++|++.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|+++
T Consensus 495 LDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 495 LDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999988889999999999999999999999999999999999775
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-69 Score=675.57 Aligned_cols=515 Identities=22% Similarity=0.284 Sum_probs=407.3
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccC-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000522 906 LSAILMQASRNGNDLWLSYWVDTTG-SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1445)
Q Consensus 906 ~~~~~~~~~~~~~~~wl~~w~~~~~-~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ 984 (1445)
++.++..++....++.+++..+... ..........+++.++++.++..++.+++.+.....+.+...+++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 89 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAA 89 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555554321 111111223345556666677778888888888899999999999999999999
Q ss_pred CcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1445)
Q Consensus 985 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr 1064 (1445)
.|..+|++.++|++++|+++|++.+++.+...+..++..++..++.++++.+.+|+++++++....+...+...+.+..+
T Consensus 90 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 169 (529)
T TIGR02857 90 LGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQ 169 (529)
T ss_pred CCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777777777666666666666666665544333222222222222222222
Q ss_pred HHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HH
Q 000522 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIA-TM 1143 (1445)
Q Consensus 1065 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~ 1143 (1445)
...+......+.+.+++.|+++|+++||+|+.|+++.+++.+..++..+..........+.....+++..+...++. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334455677899999999999999999999999999988888777766666565655555554443222211 11
Q ss_pred HHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccE
Q 000522 1144 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1223 (1445)
Q Consensus 1144 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1223 (1445)
..... .+..+.|.+..++.++..+..++..+...+.++.....+.+|+.++.+.++++.... +...+..+.|
T Consensus 250 ~~~~~-----~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~~~~~~~i 321 (529)
T TIGR02857 250 GFRLL-----AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVTAAPAPSL 321 (529)
T ss_pred HHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCCCCCCCeE
Confidence 11111 234567878788888888999999999999999999999999999998554322111 1112234689
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEE
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1445)
+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++||
T Consensus 322 ~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v 401 (529)
T TIGR02857 322 EFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401 (529)
T ss_pred EEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEE
Confidence 99999999986556799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000522 1304 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1445)
Q Consensus 1304 pQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1445)
||||++|+|||||||.++. ..+|++++++++.++++++++++ ||||.+||+|.+||||||||++||||++++|+|+|
T Consensus 402 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ili 481 (529)
T TIGR02857 402 PQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLL 481 (529)
T ss_pred cCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998865 46899999999999999999999 99999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEE
Q 000522 1381 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1428 (1445)
Q Consensus 1381 LDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl 1428 (1445)
||||||+||++|++.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=622.63 Aligned_cols=477 Identities=24% Similarity=0.398 Sum_probs=384.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHh--hhhHHHHHHHHHHHHhHHHh
Q 000522 953 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMID--DSLPFILNILLANFVGLLGI 1030 (1445)
Q Consensus 953 ~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id--~~l~~~l~~~~~~~~~~l~~ 1030 (1445)
+++.-+|+|+......-+.+++-..+++++....+.|.-...+|+.+.-..+..+.+. +.+.+.+...+ .-+...
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~Ptl---lDl~va 349 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTL---LDLGVA 349 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHH---HHhhhh
Confidence 4556667777777888889999999999999999999999999998877766554443 22222222222 222222
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHH
Q 000522 1031 A-VVLSYVQVFFLLLLVPFWFIYSKLQ----FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1105 (1445)
Q Consensus 1031 ~-~~~~~~~~~~~~~~~pl~~~~~~i~----~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~ 1105 (1445)
+ .......+|+.+++..+..+|..+. .+-.+..|.+...+.+++ +.-.+++-+..|+|-|+.|++..++|.
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYr 425 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYR 425 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHH
Confidence 2 2222346777776666665554332 222223333333333333 455789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1106 EHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTE 1185 (1445)
Q Consensus 1106 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~ 1185 (1445)
+.++.+|+.-++....-..+...-..+..+-.....++.+. .......+.|...+..+|.+++..+++++-..+..
T Consensus 426 eAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY----~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~ 501 (790)
T KOG0056|consen 426 EAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAY----RVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRS 501 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeee----eeeeccccccceehHHHHHHHHhCchHHHHHHHHH
Confidence 99999999887766554444443333322211111111111 11234456788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHH
Q 000522 1186 TEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS 1265 (1445)
Q Consensus 1186 ~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKST 1265 (1445)
++++.+-.|++.++++.++|..+.+..+|-. -.+|.|+|+||+|.|.|+ +|||+||||+++||+.||+|||||+||||
T Consensus 502 iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~-~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKST 579 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPEVVDLPGAPPLK-VTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKST 579 (790)
T ss_pred HHHhhhhHHHHHHHhhcCchhhcCCCCCCcc-ccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhH
Confidence 9999999999999998877754333333222 247999999999999876 57999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHh
Q 000522 1266 ILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEA 1344 (1445)
Q Consensus 1266 Ll~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~ 1344 (1445)
++++|+|++|.++|+|+|||+||+++..++||++||+||||.+||+.||..||.+... .+|||+.+|.+.++++|.|-+
T Consensus 580 imRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~ 659 (790)
T KOG0056|consen 580 IMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQ 659 (790)
T ss_pred HHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998764 689999999999999999999
Q ss_pred C--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhc
Q 000522 1345 V--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM 1422 (1445)
Q Consensus 1345 l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~ 1422 (1445)
+ |++|.|||+|-.||||||||+|+||++||+|.|++||||||+||..||+.||.++.+..+++|.|+|||||+||.++
T Consensus 660 fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnA 739 (790)
T KOG0056|consen 660 FPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNA 739 (790)
T ss_pred CchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecc
Confidence 8 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCeEeeecCCCCC
Q 000522 1423 DEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1423 DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|.|+|+++|+|+|.|+|+|+
T Consensus 740 D~ILvi~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 740 DLILVISNGRIVERGRHEEL 759 (790)
T ss_pred cEEEEEeCCeEeecCcHHHH
Confidence 99999999999999999987
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=617.45 Aligned_cols=496 Identities=23% Similarity=0.357 Sum_probs=384.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHH
Q 000522 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILN 1018 (1445)
Q Consensus 939 ~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~ 1018 (1445)
..-+..|.+..+...++..++.+.+++...++-+....+.+++.+...+++|.+..+|.+.+.+.+-...|...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999888877766666665555444
Q ss_pred HHHHHHHhHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcH
Q 000522 1019 ILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE 1097 (1445)
Q Consensus 1019 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e 1097 (1445)
.++..++.+......+.+ ..+.++++.+.....|..+..+..+.....|+....+....-....|++.+-.+||+||.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 444443333322222222 2333333333333333221111111111112222223333345678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHH
Q 000522 1098 DYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1177 (1445)
Q Consensus 1098 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~ 1177 (1445)
++..++|...+..+.+......+....+.+.-..+.++.. +.+.+.+..+ ...+..+.|...+.-+...++..+++
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~---~~im~l~~~g-i~~~~mtvgdlv~~n~l~~qL~~~l~ 309 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVAL---TFIMVLGSNG-IAAGKMTVGDLVMVNSLLFQLSLPLN 309 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHH---HHHHHHHhhh-hhhccccccchhhHHHHHHHHHhHHH
Confidence 9999999999988888776554443333333222222211 2222222222 22344566777777778888888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEEC
Q 000522 1178 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVG 1257 (1445)
Q Consensus 1178 ~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvG 1257 (1445)
.+-..+.++-+++.-.+-.+...+.... .... +.+.-+..|.|+|+||+|+|+|+ +++|+|+||+|++||||||||
T Consensus 310 ~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG 385 (591)
T KOG0057|consen 310 FLGSVYRELRQALTDMRTLFILLEVDED--IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVG 385 (591)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhhh--hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEEC
Confidence 8888888888887777666554322111 1111 22223346789999999999865 469999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHc
Q 000522 1258 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKC 1336 (1445)
Q Consensus 1258 rTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~ 1336 (1445)
+|||||||++++|+|+++ .+|+|+|||+||++++++.+|+.||+||||..||++||-+||.+++. .+|||+.++++++
T Consensus 386 ~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a 464 (591)
T KOG0057|consen 386 SNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRA 464 (591)
T ss_pred CCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHc
Confidence 999999999999999999 99999999999999999999999999999999999999999998875 6999999999999
Q ss_pred cHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 000522 1337 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1414 (1445)
Q Consensus 1337 ~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaH 1414 (1445)
+++|.+.++ |++|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|.+...|+|+|+|+|
T Consensus 465 ~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH 544 (591)
T KOG0057|consen 465 GLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVH 544 (591)
T ss_pred CcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999999 999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ChhHHhhcCEEEEEeCCeEeeecCCCCCC
Q 000522 1415 RISTVLNMDEILILDHGHLPHCGCAAAPN 1443 (1445)
Q Consensus 1415 rl~ti~~~DrI~Vl~~G~vvE~G~p~~~~ 1443 (1445)
|++++++||+|++||+|+|.|.|+|+|+-
T Consensus 545 ~l~ll~~~DkI~~l~nG~v~e~gth~ell 573 (591)
T KOG0057|consen 545 RLDLLKDFDKIIVLDNGTVKEYGTHSELL 573 (591)
T ss_pred cchhHhcCCEEEEEECCeeEEeccHHHHh
Confidence 99999999999999999999999998873
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=680.71 Aligned_cols=538 Identities=21% Similarity=0.252 Sum_probs=443.7
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1445)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~ 347 (1445)
.+++..++.+++.++...++.++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566778888888999999999999999999999998764333344455666677777778888888888999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 000522 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 425 (1445)
Q Consensus 348 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~ 425 (1445)
.++...+...+|+|.++++...+.+.+.|++++.++ |++.+.+.... +..+...++-++ ++++++..-++.+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALL-NLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888899999999987 88888875432 233444444433 33333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1445)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1445)
+++++.+.+..++.+.+.+..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+......+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555677888888899999999999999999999999999999999999988888876666666555555554443
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhh
Q 000522 506 FFWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1445)
Q Consensus 506 ~~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 583 (1445)
.+...... .+.++++|.|.+.++.+|.|.++++.+++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 33332222 233466788888889999999999999999999999999999999999999999999999765422110
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC
Q 000522 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~ 663 (1445)
. ..+ ......++++|++|+|++++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|
T Consensus 442 ~--~~~----------~~~~~~I~~~nvsf~Y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 442 K--TDP----------GKLSGAIEVDRVTFRYRPDG----PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred c--CCC----------CCCCceEEEEEEEEEcCCCC----ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 0 000 11235799999999996432 3459999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000522 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1445)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~ 730 (1445)
++|+|.++| .||||||+|++|+|||||||.+|++.++++..++++.|+++++++.+|+|++|.+||+
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 999999987 5999999999999999999999988889999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCE
Q 000522 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1445)
Q Consensus 731 g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~ 810 (1445)
|.+|||||||||+||||++++|+|++||||||+||+++++++.+. +.. + ++|+|+||||++.++.||+|++|++|+
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES-LER-L--KVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-h--CCeEEEEecChHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999988 433 2 589999999999999999999999999
Q ss_pred EEEecCHhHHHhccccCc
Q 000522 811 VKWIGSSADLAVSLYSGF 828 (1445)
Q Consensus 811 i~~~g~~~~~~~~~~~~~ 828 (1445)
|++.|+++|++++++.+.
T Consensus 662 iv~~G~~~~Ll~~~~~y~ 679 (686)
T TIGR03797 662 VVQQGTYDELMAREGLFA 679 (686)
T ss_pred EEEECCHHHHHhCCcHHH
Confidence 999999999987655443
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-68 Score=673.11 Aligned_cols=495 Identities=21% Similarity=0.269 Sum_probs=397.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHH
Q 000522 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNI 1019 (1445)
Q Consensus 940 ~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~ 1019 (1445)
.|+++++++.++..++.++..+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+.......+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~ 116 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLT 116 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445555555666666776677777889999999999999999999999999999999999999999998766666666
Q ss_pred HHHHHHhHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHH
Q 000522 1020 LLANFVGLLGIAVVL-SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSED 1098 (1445)
Q Consensus 1020 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~ 1098 (1445)
++..++..++.++++ .+.+|.+.++++..+.++..+.+.+.+..++..+......+.+.+.+.|+++|+++||+|++|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 196 (569)
T PRK10789 117 LVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLED 196 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccH
Confidence 665544444443333 3455554443333333333333333333333333344456778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHH
Q 000522 1099 YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1177 (1445)
Q Consensus 1099 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~ 1177 (1445)
.+.+++.+..++..+..+.......+..........+...++..+ .... ..+..+.|.+..+..+...+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv-----~~g~lt~g~l~a~~~~~~~~~~pl~ 271 (569)
T PRK10789 197 RQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMV-----VNGSLTLGQLTSFVMYLGLMIWPML 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999998887777666554444433333222222111111111 1111 1244578888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEEC
Q 000522 1178 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVG 1257 (1445)
Q Consensus 1178 ~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvG 1257 (1445)
.+...+.++.....+.+|+.++.+.+++........+ +..|.|+|+||+|+|+++.+++|+|+||+|+|||++||+|
T Consensus 272 ~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG 348 (569)
T PRK10789 272 ALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICG 348 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEEC
Confidence 9999999999999999999999987654321111111 2356899999999998655679999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHc
Q 000522 1258 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKC 1336 (1445)
Q Consensus 1258 rTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~ 1336 (1445)
+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||+|.+|+|||||||.++. ..+|++++++++.+
T Consensus 349 ~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~ 428 (569)
T PRK10789 349 PTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLA 428 (569)
T ss_pred CCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998874 57899999999999
Q ss_pred cHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 000522 1337 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1414 (1445)
Q Consensus 1337 ~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaH 1414 (1445)
++++++.++ |+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+|||
T Consensus 429 ~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH 508 (569)
T PRK10789 429 SVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAH 508 (569)
T ss_pred CCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999988 999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1415 RISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1415 rl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|++++..||+|++|++|+++|.|+|+++
T Consensus 509 ~~~~~~~~d~i~~l~~G~i~~~g~~~~l 536 (569)
T PRK10789 509 RLSALTEASEILVMQHGHIAQRGNHDQL 536 (569)
T ss_pred chhHHHcCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999998765
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-67 Score=682.23 Aligned_cols=545 Identities=20% Similarity=0.213 Sum_probs=446.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 270 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 349 (1445)
Q Consensus 270 ~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 349 (1445)
++..++.+++.++..++..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.+
T Consensus 145 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (710)
T TIGR03796 145 LWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIK 224 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777888888999999999999999999999876533333345556666667777888888888999999999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 000522 350 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAIT 428 (1445)
Q Consensus 350 ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~ 428 (1445)
+...+...+|+|.++++...+.+.+.|+++|.++.| +.+.++.. .+..+....+.+++.+++++..-++.+++.++.+
T Consensus 225 ~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 303 (710)
T TIGR03796 225 LAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFA 303 (710)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888889999999999888 66776543 3444444444444444444443344444444545
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1445)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1445)
++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++.+.++.+...+......+...+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (710)
T TIGR03796 304 AINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLP 383 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677788888888899999999999999999999999999999999999999988888887776665555444333
Q ss_pred HHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhc
Q 000522 509 ATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1445)
Q Consensus 509 ~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~ 586 (1445)
..... .+.++++|+|.+.++.+|.|.++++++++..+..|+..++..+..+.++..+++|+.++++.++..+.....
T Consensus 384 ~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~- 462 (710)
T TIGR03796 384 TLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE- 462 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc-
Confidence 22222 234567788888889999999999999999999999999999999999999999999999765432211000
Q ss_pred CCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCe
Q 000522 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1445)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G 666 (1445)
.+. ............++++|++|+|++.+ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|
T Consensus 463 -~~~---~~~~~~~~~~~~I~~~~vsf~y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 463 -APA---AGSEPSPRLSGYVELRNITFGYSPLE----PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred -ccc---cccccCCCCCCeEEEEEEEEecCCCC----CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 000 00000011245799999999997532 3459999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCC-CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
+|.++| .|+||||+|++|++||||||.++. +.+++++.++++.|+++++++.+|+|++|.+||+|.
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence 999987 599999999999999999999875 578899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEE
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~ 812 (1445)
+|||||||||+||||++++|+|++||||||+||+++++++++.+ .. +++|+|+||||++.++.||+|++|++|+|+
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l-~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL-RR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH-Hh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999984 22 479999999999999999999999999999
Q ss_pred EecCHhHHHhccccCc
Q 000522 813 WIGSSADLAVSLYSGF 828 (1445)
Q Consensus 813 ~~g~~~~~~~~~~~~~ 828 (1445)
+.|+++|+++..+.+.
T Consensus 691 ~~G~~~~Ll~~~~~y~ 706 (710)
T TIGR03796 691 QRGTHEELWAVGGAYA 706 (710)
T ss_pred EecCHHHHHHcCCcHH
Confidence 9999999987655443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-67 Score=664.77 Aligned_cols=528 Identities=22% Similarity=0.281 Sum_probs=411.4
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000522 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1445)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ 984 (1445)
+++.++..++....++.+++..+..... .....++..++++.++..+..++..........+...++++++++++++
T Consensus 25 ~~~~~~~~~~~~~~p~~~~~iid~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 101 (585)
T TIGR01192 25 VIANITLAAITIAEPILFGRIIDAISSK---SDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIIS 101 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555556666666666555532111 1111222222233333333333444444455555666677799999999
Q ss_pred CcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1445)
Q Consensus 985 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr 1064 (1445)
.|++||+++++|++++|+++|++.+.+.+...+...+..++.+++.++++++.+|.++++++.+.+++..+.+.+.+..+
T Consensus 102 l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 181 (585)
T TIGR01192 102 MPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTK 181 (585)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777776666666666666666777777666555555555555555666566
Q ss_pred HHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000522 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1144 (1445)
Q Consensus 1065 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~ 1144 (1445)
+..+......+.+.+++.|+++|+++||+||.++.+.+++.+..++..+..+.......+......++..+...++..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 261 (585)
T TIGR01192 182 NGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIG 261 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777889999999999999999999999999998888877766655443333333222222222111111111
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCC-CCccE
Q 000522 1145 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWP-FQGLI 1223 (1445)
Q Consensus 1145 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp-~~g~I 1223 (1445)
... ...+..+.|.+..++.++..+..++..+...+.++.....+.+|+.++.+.+++...... + ..++ ..+.|
T Consensus 262 ~~~----v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-~-~~~~~~~~~i 335 (585)
T TIGR01192 262 TVL----VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-A-PELPNVKGAV 335 (585)
T ss_pred HHH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc-C-CCCCCCCCeE
Confidence 100 012446788888888888889999999999999999999999999999876554311111 1 1122 35689
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEE
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1445)
+|+||+|+|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+|+.+++.+++|+++++|
T Consensus 336 ~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 336 EFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred EEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999753 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000522 1304 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1445)
Q Consensus 1304 pQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1445)
||||.+|++|+||||.++. ..+|++++++++.+++++++.++ |+||.++++|.+||||||||++|||||+++|+|||
T Consensus 415 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 415 FQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred ccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998864 46899999999999999999888 99999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1381 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1381 LDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||||+||.+|++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+++
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999988889999999999999999999999999999999998765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=675.27 Aligned_cols=535 Identities=21% Similarity=0.288 Sum_probs=444.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1445)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 348 (1445)
.++..++.+++.+....++.++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888999999999999999999999987543333344455556666677778888888888999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 000522 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGLA 426 (1445)
Q Consensus 349 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~ 426 (1445)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.+.... +..+...++-++..++++ ..-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIA-IIGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHH
Confidence 999999999999999999877 677899999998 799999986542 333444444444333333 333344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 427 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1445)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1445)
++++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667778888999999999999999999999999999999999999999999999888777777776666555443
Q ss_pred HHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhh
Q 000522 507 FWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 584 (1445)
Q Consensus 507 ~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~ 584 (1445)
+...... .+.++++|+|.+.++.+|+|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+....
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 453 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR 453 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 3333222 23356778888888999999999999999999999999999999999999999999999987643211000
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000522 585 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1445)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~ 664 (1445)
... .......|+++|++|+|+.. + +++|+|+||+|++||.++|+|+||||||||+++|+|+++|+
T Consensus 454 ---~~~--------~~~~~~~I~~~~vsf~Y~~~-~---~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 454 ---FLH--------RPRLQGEIEFRNVSFAYPGQ-E---TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred ---CCC--------CCCccceEEEEEEEEEeCCC-C---ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 000 01223579999999999642 1 34599999999999999999999999999999999999999
Q ss_pred CeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000522 665 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1445)
Q Consensus 665 ~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~ 730 (1445)
+|+|.++| .|+||||+|++|++||+|||.++++ .+++++.++++.|+++++++.+|+|++|.+||+
T Consensus 519 ~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 519 EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred CceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 99999987 6999999999999999999999976 789999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCE
Q 000522 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1445)
Q Consensus 731 g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~ 810 (1445)
|.+||||||||++||||++++|+|++||||||+||+++++++.+. +.. ..+++|+|+||||++.++.||+|++|++|+
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKR-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999887 443 456899999999999999999999999999
Q ss_pred EEEecCHhHHHhc
Q 000522 811 VKWIGSSADLAVS 823 (1445)
Q Consensus 811 i~~~g~~~~~~~~ 823 (1445)
++++|+++|+++.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999999764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=669.27 Aligned_cols=535 Identities=19% Similarity=0.188 Sum_probs=423.2
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 274 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSS 353 (1445)
Q Consensus 274 ~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~ 353 (1445)
.+.+++.++...++.++..++..+.|++++.++|.+..+.+.......+..++++.++..++.....+...+.+.++...
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888999999999999999999998865332222222233334444555555555556666777788888
Q ss_pred HHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 000522 354 IMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI 432 (1445)
Q Consensus 354 L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~~~ 432 (1445)
+...+|+|.++.+...+++.++|++.|.++.|++.+.+.+ ..+..++...+.+++++++++..-...+++.++.+++..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8899999999999988888899999999999999998765 345556655556555444443322222333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000522 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT- 511 (1445)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~- 511 (1445)
.+..++.++..+..++..+..++..+...|.++|+++||.|++|+.+.+++++..++-.+...+.....+.........
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888899999999999999999999999999999887777665444443333332222222221111
Q ss_pred -HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCC
Q 000522 512 -PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1445)
Q Consensus 512 -~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~ 590 (1445)
...+.++.+|.|.+.++.++++.+++++.+...+..|+..++..+..+.++.++.+||.+|++.++..+.... ..+
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~- 472 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCC-
Confidence 1223445677888888999999999999999999999999999999999999999999999976543221000 000
Q ss_pred cccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEE
Q 000522 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1445)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 670 (1445)
.+....|+++|++|+|++.++ +++|+|+||++++||.++||||||||||||+++|+|+++|++|+|.+
T Consensus 473 ---------~~~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 473 ---------LNLEGLIEFQDVSFSYPNRPD---VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred ---------CCCCCeEEEEEEEEECCCCCC---CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 122356999999999975322 34699999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 671 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
+| +|+||||+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 87 5999999999999999999999964 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecC
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1445)
|||||++||||++++|+|+|||||||+||+++++.+.+. . ..+++|+|+||||++.+..||+|++|++|+|+++|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~-~---~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-R---SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHh-h---ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 999999999999999999999999999999999988872 1 346899999999999999999999999999999999
Q ss_pred HhHHHhccccC
Q 000522 817 SADLAVSLYSG 827 (1445)
Q Consensus 817 ~~~~~~~~~~~ 827 (1445)
++|++++++.+
T Consensus 697 ~~eL~~~~~~y 707 (711)
T TIGR00958 697 HKQLMEDQGCY 707 (711)
T ss_pred HHHHHhCCCch
Confidence 99998765544
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=652.84 Aligned_cols=522 Identities=19% Similarity=0.209 Sum_probs=400.6
Q ss_pred HHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000522 907 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986 (1445)
Q Consensus 907 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p 986 (1445)
+.++........++.+....+..-..........++.+++++.++..++.+++.+.....+.+...++++++++++++.|
T Consensus 14 ~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 93 (544)
T TIGR01842 14 FSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSAT 93 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33444445555566665555432111111122234445555666677778888888888999999999999999999999
Q ss_pred ccccccCChhHHHHHHHhhHHHHhhhhHH-HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPF-ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1065 (1445)
Q Consensus 987 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1065 (1445)
+.. .|...+++++|++.+.+.+.. .+..++..++.++. ++++++.+|++.++++...+++..+..+..+..+.
T Consensus 94 ~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~ 167 (544)
T TIGR01842 94 LRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKK 167 (544)
T ss_pred ccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 842 366789999999999887655 34444444443333 34455666665443332222222222222332233
Q ss_pred HHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000522 1066 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1145 (1445)
Q Consensus 1066 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v 1145 (1445)
..+...+..+...+++.|+++|+++||+||.|+.+.+++.+..++..+..+.......+......++..+...++..+..
T Consensus 168 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 247 (544)
T TIGR01842 168 PLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGA 247 (544)
T ss_pred HHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455667788999999999999999999999999998888877666554444433333333322211111111111
Q ss_pred HhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEE
Q 000522 1146 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1225 (1445)
Q Consensus 1146 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1225 (1445)
.. ...+..++|.+..++.+...+..++..+...+.++.....+.+|+.++.+.++|..... .. -+..+.|++
T Consensus 248 ~l----~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~---~~~~~~i~~ 319 (544)
T TIGR01842 248 YL----AIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PL---PEPEGHLSV 319 (544)
T ss_pred HH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CC---CCCCCeEEE
Confidence 00 01245678888888999999999999999999999999999999999998766532111 11 123568999
Q ss_pred EEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcC
Q 000522 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305 (1445)
Q Consensus 1226 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1305 (1445)
+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||+|+.+++.+.+|+++++|||
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 99999997655689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1306 SPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1306 dp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
||++|++|+|||+.++++ .+|++++++++.++++++++++ |+||.++|+|.+||||||||++||||++++|+|||||
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD 479 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999986654 7899999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1383 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+++
T Consensus 480 Epts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred CCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999998875 68999999999999999999999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=667.22 Aligned_cols=536 Identities=21% Similarity=0.245 Sum_probs=434.4
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1445)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir 351 (1445)
..++.+++.++...+..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888889999999999999999999987653333333445555666677778888888888899999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 000522 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1445)
Q Consensus 352 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~ 429 (1445)
..+...+|+|.++++...+.+.+.|++++.++ |.+.+.+.... +..+...++.++..+++++... +.+++.+++++
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNM-LLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 99999999999999999888899999999998 99998875432 2223344444433333333222 22333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1445)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1445)
+.+.+..++.++.++..++.++..+++.+...|.++|+++||.+|+|+.+.+++++...+..+...+..........+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677788888999999999999999999999999999999999999888877765555554444443333322222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcC
Q 000522 510 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1445)
Q Consensus 510 ~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~ 587 (1445)
... ..+.++++|+|.+.++.+|+|.++++.++...+..|+..+...+..+.+++++.+|+.++++.++..+.....
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~-- 464 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR-- 464 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc--
Confidence 221 2234567888988899999999999999999999999999999999999999999999999765432211000
Q ss_pred CCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeE
Q 000522 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1445)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 667 (1445)
.+ .....+.|+++|++|+|+.+ +++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+
T Consensus 465 ~~---------~~~~~~~I~~~~vsf~y~~~-----~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 465 TE---------LNNLNGDIVINDVSYSYGYG-----SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred cC---------CCCCCCcEEEEEEEEEcCCC-----CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 00 01234579999999999632 24599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEcCCCCCCCccHHHHHhcCC--CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 668 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
|.++| .|+||||+|++|++||||||.+|. +.+++++.++++.++++++++.+|+|++|.+||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99987 599999999999999999999983 467889999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEE
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~ 812 (1445)
+|||||||||+||||++++|+|++||||||+||+++++++.+.+ .. . +++|+|+||||++.+..||+|++|++|+++
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L-~~-~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LN-L-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HH-h-cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999874 33 3 689999999999999999999999999999
Q ss_pred EecCHhHHHhccccCc
Q 000522 813 WIGSSADLAVSLYSGF 828 (1445)
Q Consensus 813 ~~g~~~~~~~~~~~~~ 828 (1445)
+.|+++|+++..+.+.
T Consensus 688 ~~G~~~~L~~~~~~y~ 703 (708)
T TIGR01193 688 EQGSHDELLDRNGFYA 703 (708)
T ss_pred EECCHHHHHhcCCcHH
Confidence 9999999987655443
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=645.65 Aligned_cols=540 Identities=18% Similarity=0.199 Sum_probs=430.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 271 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 350 (1445)
Q Consensus 271 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~i 350 (1445)
...++.+++.++..++..++..++..+.|++++.+++.+..+........++.+++++.++..++.....+...+++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777888899999999987654322222222333344455666666666667788899999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 000522 351 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 429 (1445)
Q Consensus 351 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~ 429 (1445)
...+...+|+|.++++.....+.+.|++++.++.|++.+.+.. ..+..++..++.+++.+.+++..-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888999999999999999998754 445556666666655555444433333343444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 430 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 509 (1445)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 509 (1445)
+.+.+..++.+++++..++.++..++..+...|.++|+++||.+|+|+.+.+++++.-++-.+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888899999999999999999999999999999988888877654444444444333333322222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcC
Q 000522 510 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 587 (1445)
Q Consensus 510 ~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~ 587 (1445)
... ..+.++.++.|.+..+.++++.+.+.++++..+..|+..+...+..+.+++.+++|+.++++.++..+...
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~---- 332 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK---- 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC----
Confidence 221 22344566777777889999999999999999999999999999999999999999999997654321100
Q ss_pred CCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeE
Q 000522 588 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1445)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 667 (1445)
.. .+.....++++|++|+|++. + +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+
T Consensus 333 ~~---------~~~~~~~i~~~~vsf~y~~~-~---~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 333 RV---------IERAKGDIEFRNVTFTYPGK-E---VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred cC---------CCCCCCeEEEEEEEEecCCC-C---CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 00 01123469999999999643 1 34599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC--CChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 668 IHASG-------------SIAYVPQVPWILSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 668 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~--~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
|.++| .|+||||+|.+|++||||||.+|.+ +++++++++++.++++++++.+|+|++|.+||+|.
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 99987 5899999999999999999999853 78899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEE
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~ 812 (1445)
+||||||||++||||+|++|+|++|||||||||+++++.+++. +.. +.+++|+|+||||++.++.||+|++|++|+++
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999887 433 44679999999999999999999999999999
Q ss_pred EecCHhHHHhccccCcc
Q 000522 813 WIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 813 ~~g~~~~~~~~~~~~~~ 829 (1445)
+.|+++++++..+.+.+
T Consensus 558 e~g~~~~l~~~~~~y~~ 574 (582)
T PRK11176 558 ERGTHAELLAQNGVYAQ 574 (582)
T ss_pred EeCCHHHHHhCCChHHH
Confidence 99999999877654443
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-67 Score=621.93 Aligned_cols=458 Identities=26% Similarity=0.366 Sum_probs=343.9
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCC----CeEEEEcC--------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT----HGSIHASG-------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~----~G~i~~~~-------- 672 (1445)
.++++|.+..|..... + ..+++||||++.+||+++|||.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~-~-~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATDGG-R-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecCCc-c-eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 6789999998876522 2 35799999999999999999999999999999999999887 79998876
Q ss_pred ---------eEEEEcCCCC-CCCc--cHHHHHh----cCCCC----ChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 673 ---------SIAYVPQVPW-ILSG--TIRDNIL----FGKNY----DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 673 ---------~i~y~~Q~p~-l~~~--ti~~nI~----~g~~~----~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
.|||++|+|+ .+|. ||.+-|. ..... ..++..+.++..+|.+.... .....
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPh 153 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPH 153 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCc
Confidence 5999999997 4554 7777664 22222 12334445556666543322 44667
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEE
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i 811 (1445)
.|||||||||.||+|+..+|+++|+||||+|||+.++.+|++.+.......|.++|+|||++..+.+ ||+|+||.+|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999987432223457799999999999887 999999999999
Q ss_pred EEecCHhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHH
Q 000522 812 KWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 891 (1445)
Q Consensus 812 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 891 (1445)
+|.|+.+++..+...-
T Consensus 234 VE~G~~~~i~~~p~hp---------------------------------------------------------------- 249 (539)
T COG1123 234 VETGPTEEILSNPQHP---------------------------------------------------------------- 249 (539)
T ss_pred EEecCHHHHHhccCCc----------------------------------------------------------------
Confidence 9999999886431100
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 892 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 971 (1445)
Q Consensus 892 y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s 971 (1445)
|-+. + |... ........
T Consensus 250 YT~~----------L------------------l~a~-p~~~~~~~---------------------------------- 266 (539)
T COG1123 250 YTRG----------L------------------LAAV-PRLGDEKI---------------------------------- 266 (539)
T ss_pred ccHH----------H------------------HhhC-CCcccccc----------------------------------
Confidence 0000 0 0000 00000000
Q ss_pred HHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000522 972 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1051 (1445)
Q Consensus 972 ~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~ 1051 (1445)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000522 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQL 1131 (1445)
Q Consensus 1052 ~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1131 (1445)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCC
Q 000522 1132 LAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ 1211 (1445)
Q Consensus 1132 l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~ 1211 (1445)
. . .+.+
T Consensus 267 -------------------~--~-----------------------------------------------~~~~------ 272 (539)
T COG1123 267 -------------------I--R-----------------------------------------------LPRR------ 272 (539)
T ss_pred -------------------c--c-----------------------------------------------cccc------
Confidence 0 0 0000
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCC---------CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Q 000522 1212 SLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282 (1445)
Q Consensus 1212 ~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1282 (1445)
.+. +....++++|++.+|... ...+++||||++++||.+||||.||||||||.++|+|+++|++|+|.
T Consensus 273 ~~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~ 349 (539)
T COG1123 273 GPL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII 349 (539)
T ss_pred ccc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 000 012358899999999741 24689999999999999999999999999999999999999999999
Q ss_pred ECCee--CCCCChHhhhcceEEEcCCCcc--c-CccHHHhcC-CCCCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCC
Q 000522 1283 VDGLN--IINTPVRDLRGRFAVVPQSPFL--F-EGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESG 1355 (1445)
Q Consensus 1283 IDG~d--i~~i~~~~lR~~i~~VpQdp~l--F-~gTIReNLd-p~~~~sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G 1355 (1445)
++|.| .+.-....+|+++-+|.|||+- - ..||+++|. |...+.... .+-.+..+.+.++..||.. ..+...
T Consensus 350 ~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 350 FDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred EeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 99977 3333355678899999999973 2 259999984 222111100 0111112223333335655 355667
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCe
Q 000522 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1432 (1445)
Q Consensus 1356 ~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1432 (1445)
..||||||||+||||||..+|++||+|||||+||+-+...|.+.|.+..+ |.|.|+|||++..++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 78999999999999999999999999999999999999999999877543 7999999999999986 89999999999
Q ss_pred EeeecCC
Q 000522 1433 LPHCGCA 1439 (1445)
Q Consensus 1433 vvE~G~p 1439 (1445)
|||.|+.
T Consensus 508 iVE~G~~ 514 (539)
T COG1123 508 IVEEGPT 514 (539)
T ss_pred EEEeCCH
Confidence 9999954
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=642.32 Aligned_cols=534 Identities=20% Similarity=0.230 Sum_probs=438.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1445)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir 351 (1445)
.+++.+++.++..+++.++..++...+|++++.+++...........+.+++.++++.++..++.....+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVV 86 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888999999999999999999999865543322233334444555666677777777788889999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 000522 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITIL 430 (1445)
Q Consensus 352 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~ 430 (1445)
..+...+|+|.++.+.....+.+.|++.|.++.|++++.+... .+..++...+.+++++.+++..-.+.+++.++++++
T Consensus 87 ~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l 166 (571)
T TIGR02203 87 RDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV 166 (571)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999888888999999999999999987653 455555555555554444444333333444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 431 LIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWAT 510 (1445)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~ 510 (1445)
.+.+..++.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+..........+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (571)
T TIGR02203 167 LSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQL 246 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888889999999999999999999999999999999999988888887666665555544444433333222
Q ss_pred HH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCC
Q 000522 511 TP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANS 588 (1445)
Q Consensus 511 ~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1445)
.. ..+.++.+|.+.+..+.+|++.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+... .
T Consensus 247 ~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~----~ 322 (571)
T TIGR02203 247 IASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT----R 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----C
Confidence 22 22345667778888899999999999999999999999999999999999999999999997654322100 0
Q ss_pred CCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEE
Q 000522 589 PSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668 (1445)
Q Consensus 589 ~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i 668 (1445)
+. ...+..++++|++|+|++.+ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|
T Consensus 323 ~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I 389 (571)
T TIGR02203 323 AI---------ERARGDVEFRNVTFRYPGRD----RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389 (571)
T ss_pred CC---------CCCCCeEEEEEEEEEcCCCC----CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 00 11234699999999996532 245999999999999999999999999999999999999999999
Q ss_pred EEcC-------------eEEEEcCCCCCCCccHHHHHhcCC--CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000522 669 HASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1445)
Q Consensus 669 ~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~ 733 (1445)
.++| .|+||||+|++|++||||||.++. +.++++++++++.|++++++..+|+|.+|.+|++|.+
T Consensus 390 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~ 469 (571)
T TIGR02203 390 LLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL 469 (571)
T ss_pred EECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCc
Confidence 9987 499999999999999999999985 5889999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEE
Q 000522 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813 (1445)
Q Consensus 734 LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~ 813 (1445)
||||||||++||||++++|+|++||||||+||+++++++.+. +.. ..+++|+|+|||+.+.+..||+|++|++|++++
T Consensus 470 LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999999999999999999999887 433 456899999999999999999999999999999
Q ss_pred ecCHhHHHhcc
Q 000522 814 IGSSADLAVSL 824 (1445)
Q Consensus 814 ~g~~~~~~~~~ 824 (1445)
.|+++++++..
T Consensus 548 ~g~~~~l~~~~ 558 (571)
T TIGR02203 548 RGTHNELLARN 558 (571)
T ss_pred eCCHHHHHHcC
Confidence 99999987653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-65 Score=688.80 Aligned_cols=529 Identities=19% Similarity=0.228 Sum_probs=404.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977 (1445)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ 977 (1445)
+..+++.+++.++..++....++.+...++... .......+...+++++++..++.+++.+++.+.+.+...+++.+
T Consensus 59 ~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~ 135 (1466)
T PTZ00265 59 RKLLGVSFVCATISGGTLPFFVSVFGVIMKNMN---LGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLE 135 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555554321 11123344556667777788888899999999999999999999
Q ss_pred HHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1057 (1445)
Q Consensus 978 ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~ 1057 (1445)
++++++++|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.+.++++.++.+++.+..
T Consensus 136 ~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~ 215 (1466)
T PTZ00265 136 FLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGV 215 (1466)
T ss_pred HHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888888888766554444443333333
Q ss_pred HHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000522 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1137 (1445)
Q Consensus 1058 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~ 1137 (1445)
.+.+..+...+......+...+.+.|+++|+++||+|+.|+++.++|.+..+...+..+.......+......++..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 295 (1466)
T PTZ00265 216 ICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASY 295 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444344444444455677889999999999999999999999999988888777766554443332222222221111
Q ss_pred HHHHHHH-HHhhcCC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCC
Q 000522 1138 SFIATMA-VIGSRGN---LPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL 1213 (1445)
Q Consensus 1138 ~~~~~~~-v~~~~~~---~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~ 1213 (1445)
.++..+. .....+. ...+..++|.+...+.+.+.....+..+...+.++..+..|.+|+.+.++.+++..... .
T Consensus 296 ~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~--~ 373 (1466)
T PTZ00265 296 AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND--D 373 (1466)
T ss_pred HHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--C
Confidence 1111110 0000110 00112344544433333333344455667788899999999999999998766532111 1
Q ss_pred CCCCCCCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE-CCeeCCCC
Q 000522 1214 SPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DGLNIINT 1291 (1445)
Q Consensus 1214 ~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I-DG~di~~i 1291 (1445)
....|..+.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|.+ ||.|+.++
T Consensus 374 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~ 453 (1466)
T PTZ00265 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI 453 (1466)
T ss_pred CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC
Confidence 1112334589999999999753 247999999999999999999999999999999999999999999999 67999999
Q ss_pred ChHhhhcceEEEcCCCcccCccHHHhcCCCC-------------------------------------------------
Q 000522 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH------------------------------------------------- 1322 (1445)
Q Consensus 1292 ~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~------------------------------------------------- 1322 (1445)
+.+++|++|++|||+|.+|++||+|||.++.
T Consensus 454 ~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 454 NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 9999999999999999999999999997631
Q ss_pred ---------CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHH
Q 000522 1323 ---------MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391 (1445)
Q Consensus 1323 ---------~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~ 1391 (1445)
..+|++++++++.++++++++.+ |+||.+|++|.+||||||||++||||++++|+|||||||||+||++
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 24678999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCC
Q 000522 1392 TASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHG 1431 (1445)
Q Consensus 1392 te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G 1431 (1445)
+++.|++.|++.. +++|+|+||||++++..||+|+||++|
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999999999875 489999999999999999999999996
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=635.60 Aligned_cols=532 Identities=19% Similarity=0.230 Sum_probs=416.0
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD--GYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 349 (1445)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~--g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 349 (1445)
...+.+++.++...++.++..++..+.|+++..+++.+....+... ...+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888899999999999999999997754222111 12223334445556667777777888899999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HhhHhHHHHHHHH
Q 000522 350 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYL---LYTQVKFAFVSGL 425 (1445)
Q Consensus 350 ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~p~~i~i~~~l---L~~~lg~a~l~~~ 425 (1445)
+...+...+|+|.++.+.....+.+.|+++|.++.|++.+.+.... +..+....+.+++.+.+ +.+.+++..++++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~ 175 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIF 175 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888889999999999999999875543 33333333333332222 2233333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000522 426 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC- 504 (1445)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~- 504 (1445)
++.+.+..+..++..+..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+.....+..
T Consensus 176 ---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (592)
T PRK10790 176 ---PAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLL 252 (592)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223344555666677777777888888899999999999999999999999888876654444333322222211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Q 000522 505 ---VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581 (1445)
Q Consensus 505 ---~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~ 581 (1445)
..+......+..++.+ .+ +..+.++.+.+++++.++..+..|+..+...+..+.++..+.+||.++++.++.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~-~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 253 RPLLSLFSALILCGLLMLF-GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHHHHHHH-HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 1111111111112222 23 356789999999999999999999999999999999999999999999975432111
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCc
Q 000522 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~ 661 (1445)
.. .. ......++++|++|+|+++ +++|+|+||++++||.++|+|+||||||||+++|+|++
T Consensus 331 ~~---~~-----------~~~~~~i~~~~v~f~y~~~-----~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 331 ND---DR-----------PLQSGRIDIDNVSFAYRDD-----NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred CC---cc-----------CCCCCeEEEEEEEEEeCCC-----CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 00 00 1123469999999999632 23599999999999999999999999999999999999
Q ss_pred cCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCccccc
Q 000522 662 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1445)
Q Consensus 662 ~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg 728 (1445)
+|++|+|.++| .|+||||+|++|++||||||.+|.+.++++..+++++++++++++.+|+|.+|.+|
T Consensus 392 ~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 99999999987 49999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeC
Q 000522 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1445)
Q Consensus 729 ~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~ 808 (1445)
|+|.+||||||||++||||++++|+|++||||||+||++++++|.+. +.. +.+++|+|+||||++.++.||+|++|++
T Consensus 472 e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAA-VREHTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999887 433 4567999999999999999999999999
Q ss_pred CEEEEecCHhHHHhccccCcc
Q 000522 809 GQVKWIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 809 G~i~~~g~~~~~~~~~~~~~~ 829 (1445)
|++++.|+++|+++..+.+..
T Consensus 550 G~i~~~G~~~~L~~~~~~y~~ 570 (592)
T PRK10790 550 GQAVEQGTHQQLLAAQGRYWQ 570 (592)
T ss_pred CEEEEEcCHHHHHhCCCHHHH
Confidence 999999999999876655444
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=634.00 Aligned_cols=539 Identities=18% Similarity=0.216 Sum_probs=425.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1445)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 348 (1445)
.++.+++.+++.++...++.++..++.++.|++++.+++.+-.+.+......+++.++++.++..++...+.+...+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788888889999999999999999999974322222222223333444445555566667788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH-HH--hhHhHHHHHHH
Q 000522 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY-LL--YTQVKFAFVSG 424 (1445)
Q Consensus 349 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~-lL--~~~lg~a~l~~ 424 (1445)
++...+...+|+|.++.+.....+.+.|++.+.++.|++.+.+... .+..++...+.+++++. ++ .+.+++.++++
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999998887888899999999999999987653 34444444444333332 22 23333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1445)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1445)
+++.+.+..++.+++++..+++++..++..+...|.++|+++||.+++|+.+.+++++..++..+...+......+.
T Consensus 168 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 168 ---VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344567888888899999999999999999999999999999999988888887665555544443333332
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhh
Q 000522 505 VFFWATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582 (1445)
Q Consensus 505 ~~~~~~~--~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~ 582 (1445)
..+.... ...+..+.+|.|.+..+.++++.++++..+...+..|+..++..+..+.+++.+++|+.++++.++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 2222111 22334556778888888999999999999999999999999999999999999999999999765321100
Q ss_pred hhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc
Q 000522 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~ 662 (1445)
... .... .+....++++|++|+|+.+++ +++|+|+||+++|||.++|+|+||||||||+++|+|+++
T Consensus 325 ~~~-~~~~---------~~~~~~i~~~~v~f~y~~~~~---~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 325 AHP-KTLP---------VPLRGEIEFEQVNFAYPARPD---QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred CCC-ccCC---------cCCCceEEEEEEEEECCCCCC---CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 000 0000 012346999999999975322 345999999999999999999999999999999999999
Q ss_pred CCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCccccc
Q 000522 663 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIG 728 (1445)
Q Consensus 663 ~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg 728 (1445)
|.+|+|.++| .|+||||+|++|++||||||.+|.+ .++++..++++.+++.++++.+|+|++|.+|
T Consensus 392 p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~ 471 (576)
T TIGR02204 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471 (576)
T ss_pred CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeC
Confidence 9999999987 5999999999999999999999875 5778899999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeC
Q 000522 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1445)
Q Consensus 729 ~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~ 808 (1445)
|+|.+||||||||++||||++++|++++||||||+||+++++.+++. +.. +.+++|+|+|||+.+.++.+|+|++|++
T Consensus 472 ~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~ 549 (576)
T TIGR02204 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA-LET-LMKGRTTLIIAHRLATVLKADRIVVMDQ 549 (576)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999988876 443 4568999999999999999999999999
Q ss_pred CEEEEecCHhHHHhccc
Q 000522 809 GQVKWIGSSADLAVSLY 825 (1445)
Q Consensus 809 G~i~~~g~~~~~~~~~~ 825 (1445)
|++++.|+++++.++.+
T Consensus 550 g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 550 GRIVAQGTHAELIAKGG 566 (576)
T ss_pred CEEEeeecHHHHHHcCC
Confidence 99999999999876543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=627.76 Aligned_cols=505 Identities=19% Similarity=0.189 Sum_probs=392.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1445)
Q Consensus 272 ~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir 351 (1445)
.+.+.+++.++...++.++..++..+.|++++.++|.+.........+.+.++++++.++..++.....+...+.+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777788888899999999999999999876542221111111222223445566666666677788899999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHhhHhHHHHHHHHHH
Q 000522 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALY---LLYTQVKFAFVSGLAI 427 (1445)
Q Consensus 352 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~p~~i~i~~~---lL~~~lg~a~l~~~~~ 427 (1445)
..+...+|+|.++++...+.+.++|+++|.++.|++++.+.... +..+....+.+++++. .+.+.+++.+++++++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999886543 4444444444333333 3334444444333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 507 (1445)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 507 (1445)
+.++ ...+..+..++..++..+..++..+...|.++|+++||.+++|+.+.+++++..++..+...+.....+....+
T Consensus 166 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (529)
T TIGR02868 166 AGFV--APLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAA 243 (529)
T ss_pred HHHH--HHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 12233343455567777888999999999999999999999999999999887766656555555544444333
Q ss_pred HHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhh
Q 000522 508 WATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQA 585 (1445)
Q Consensus 508 ~~~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~ 585 (1445)
..... ..+.++++|.|.+.++.++++.+.+.+.+...+..|+..++..+..+.++.++.+|+.++++.++..+....
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~- 322 (529)
T TIGR02868 244 QLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV- 322 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC-
Confidence 32222 223345677787888899999999999999999999999999999999999999999999976543211000
Q ss_pred cCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCC
Q 000522 586 ANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1445)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~ 665 (1445)
..+. ........|+++|++|+|+++ + ++|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus 323 -~~~~-------~~~~~~~~I~~~~vsf~Y~~~--~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 389 (529)
T TIGR02868 323 -PAAG-------ALGLGKPTLELRDLSFGYPGS--P---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389 (529)
T ss_pred -CCCc-------ccCCCCceEEEEEEEEecCCC--C---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 0000 001123469999999999642 2 35999999999999999999999999999999999999999
Q ss_pred eEEEEcC------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 666 GSIHASG------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 666 G~i~~~~------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
|+|.++| +||||||+|++|++||||||.+|.+ .++++++++++.|+++++++.+|+|++|.+||+|.
T Consensus 390 G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 469 (529)
T TIGR02868 390 GEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGA 469 (529)
T ss_pred cEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccC
Confidence 9999998 7999999999999999999999864 68899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCc
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~ 794 (1445)
+||||||||++||||++++|+|++||||||+||+++++.|.+.+ .. ..+++|+|+||||+
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~-~~~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LA-ALSGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH-hcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999884 33 56789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=581.83 Aligned_cols=475 Identities=25% Similarity=0.379 Sum_probs=383.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhH-HHHHHH
Q 000522 962 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL-SYVQVF 1040 (1445)
Q Consensus 962 ~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~-~~~~~~ 1040 (1445)
++...+..+-+.+--+.|.++.+..+.|.-+..+|-+..-......-|+..+-..+...+..++-+....+++ ....||
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 4455566666777778888999999999888777755444433333333333333333333333332222222 223566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1041 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1120 (1445)
Q Consensus 1041 ~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~ 1120 (1445)
++++.+...++|.++.-.-....-..||.-..+.+..++.-.+++-+-.|+|.||.|+++..+|.+.++.++++..+...
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 66665555555544333222233344555555666677788899999999999999999999999999999999888777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000522 1121 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1200 (1445)
Q Consensus 1121 ~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~ 1200 (1445)
.-.|+.+.-..+..........+.... ...+..+.|.+...-.+..++..+++.+...+.++.++....|+..+..
T Consensus 165 Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~----v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 165 SLLVLNFGQTAIFSTGLRVMMTMSALG----VEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcHHH----HhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 777777665544443222222221111 1235567888888999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCC-CCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 000522 1201 DVPQEELCGYQSLSPDWP-FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279 (1445)
Q Consensus 1201 ~~~~e~~~~~~~~~~~wp-~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G 1279 (1445)
+.+.|....+ ..++-|| ..|.|.|+||+|.|.+. .++|+|+||++++|+++||||+||+||||+..+|+|+|++++|
T Consensus 241 ~~~~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAP-DAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCC-CCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 8877653322 2344574 46899999999999876 4799999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCC
Q 000522 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1356 (1445)
Q Consensus 1280 ~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~ 1356 (1445)
+|.|||+||.++..+.+|+.||+||||.+||+.|+..|+.++++ .+++|++.|++.++++++++++ |+||.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999998765 6899999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeee
Q 000522 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHC 1436 (1445)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~ 1436 (1445)
.||||||||+++||++|++|+||+||||||+||..||+.||..|++..+++|.++|||||+||.++|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 000522 1437 GCAAAP 1442 (1445)
Q Consensus 1437 G~p~~~ 1442 (1445)
|+|+++
T Consensus 479 g~h~~l 484 (497)
T COG5265 479 GTHEEL 484 (497)
T ss_pred CcHHHH
Confidence 999876
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=651.21 Aligned_cols=478 Identities=23% Similarity=0.316 Sum_probs=345.0
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1445)
+..++++|++++|..... ..++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 10 ~~~l~v~~l~~~y~~~~~--~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQ--KIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCCC--ceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 346899999999863211 12469999999999999999999999999999999999999999987643
Q ss_pred -----------------eEEEEcCCC--CCCC-ccHHHHHhcCCC----CCh----hhHHHHHHHhcchHHHhhccCCCc
Q 000522 673 -----------------SIAYVPQVP--WILS-GTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDM 724 (1445)
Q Consensus 673 -----------------~i~y~~Q~p--~l~~-~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~gd~ 724 (1445)
.||||+|+| .++. .||+|||.++.. .+. ++..++++..++... .
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~ 159 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------Q 159 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------h
Confidence 489999998 4554 599999987521 222 234455555555310 1
Q ss_pred ccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhh-CCE
Q 000522 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADM 802 (1445)
Q Consensus 725 t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-~d~ 802 (1445)
........+|||||||||+||||++.+|++|||||||++||+.+.+.+.+. +.... ..|+|+|+|||+++.+.. ||+
T Consensus 160 ~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 123456679999999999999999999999999999999999999988875 33211 237899999999998765 999
Q ss_pred EEEEeCCEEEEecCHhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcC
Q 000522 803 VVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 882 (1445)
Q Consensus 803 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 882 (1445)
|++|++|++++.|+++++..... +
T Consensus 239 i~vl~~G~i~~~g~~~~~~~~~~-------------~------------------------------------------- 262 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQIFHAPQ-------------H------------------------------------------- 262 (623)
T ss_pred EEEeeCCeecccCCHHHhhcCCC-------------C-------------------------------------------
Confidence 99999999998888776531100 0
Q ss_pred ccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 883 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFS 962 (1445)
Q Consensus 883 ~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~ 962 (1445)
. |.+. + +. +..... ..
T Consensus 263 -----~---~~~~----------l---------------~~-~~~~~~----~~-------------------------- 278 (623)
T PRK10261 263 -----P---YTRA----------L---------------LA-AVPQLG----AM-------------------------- 278 (623)
T ss_pred -----h---hhhh----------h---------------hh-ccCccc----cc--------------------------
Confidence 0 0000 0 00 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 000522 963 FAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL 1042 (1445)
Q Consensus 963 ~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 1042 (1445)
.|+ .++
T Consensus 279 --------------------------------~~~--------------~~~---------------------------- 284 (623)
T PRK10261 279 --------------------------------KGL--------------DYP---------------------------- 284 (623)
T ss_pred --------------------------------ccc--------------cCC----------------------------
Confidence 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1043 LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122 (1445)
Q Consensus 1043 ~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~ 1122 (1445)
.+-|.. +
T Consensus 285 ------------------------------~~~~~~----~--------------------------------------- 291 (623)
T PRK10261 285 ------------------------------RRFPLI----S--------------------------------------- 291 (623)
T ss_pred ------------------------------cccccc----c---------------------------------------
Confidence 000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000522 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1202 (1445)
Q Consensus 1123 ~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~ 1202 (1445)
.. . .. .. .
T Consensus 292 ---------------------~~---~-~~-~~----------------------------------------------~ 299 (623)
T PRK10261 292 ---------------------LE---H-PA-KQ----------------------------------------------E 299 (623)
T ss_pred ---------------------cc---c-cc-cc----------------------------------------------C
Confidence 00 0 00 00 0
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEeCCC---------CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Q 000522 1203 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1203 ~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl 1273 (1445)
+.+. . ...+ +....++++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+
T Consensus 300 ~~~~--~-~~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl 373 (623)
T PRK10261 300 PPIE--Q-DTVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL 373 (623)
T ss_pred cccc--c-cccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 0000 0 0000 012259999999999621 13699999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeeCCCCChH---hhhcceEEEcCCCc--ccCc-cHHHhcCCC----CCCChHHHHHHHHHccHHHHHH
Q 000522 1274 TPICGGQILVDGLNIINTPVR---DLRGRFAVVPQSPF--LFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVE 1343 (1445)
Q Consensus 1274 ~~~~~G~I~IDG~di~~i~~~---~lR~~i~~VpQdp~--lF~g-TIReNLdp~----~~~sd~ei~~aL~~~~l~~~i~ 1343 (1445)
++|++|+|.+||.++...+.. .+|++|+||||+|. +++. |+++|+... +....++.. ....+.++
T Consensus 374 ~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~ 448 (623)
T PRK10261 374 VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLE 448 (623)
T ss_pred CCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHH
Confidence 999999999999999877643 45788999999983 6654 999998531 111111111 11223334
Q ss_pred hCCCc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh
Q 000522 1344 AVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1420 (1445)
Q Consensus 1344 ~lgLd-t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~ 1420 (1445)
.+|++ .........||||||||++|||||+.+|+|||||||||+||..+.+.|.+.|++.. .+.|||+|||+++.+.
T Consensus 449 ~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~ 528 (623)
T PRK10261 449 RVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVE 528 (623)
T ss_pred HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 44664 33455566899999999999999999999999999999999999999999998764 3789999999999987
Q ss_pred h-cCEEEEEeCCeEeeecCCCC
Q 000522 1421 N-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1421 ~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
. ||||++|++|+|+|.|++++
T Consensus 529 ~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 529 RISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HhCCEEEEEECCEEEEecCHHH
Confidence 6 89999999999999998765
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=637.89 Aligned_cols=542 Identities=19% Similarity=0.212 Sum_probs=438.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1445)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 348 (1445)
.+...++.+++.+...++..++..++.++.|++++.++|.+-...+....+.++++++++.++..++.....+...+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTS 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888888999999999999999999999987643333444555666666777788888888889999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 000522 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1445)
Q Consensus 349 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~ 427 (1445)
++...+...+|+|.++++...+.+.+.|++.+.+ .|++.+.+... .+..+....+.+++.+.+++..-++.+++.+++
T Consensus 209 ~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 287 (694)
T TIGR01846 209 RIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGS 287 (694)
T ss_pred HHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998889999999998 59999988653 333333222222222333333223333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 507 (1445)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 507 (1445)
+++.+.+..++.+++++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++.+.-++..+...+..........+
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR01846 288 LVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQA 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677778888888888999999999999999999999999999999998887666666555555444443333
Q ss_pred HHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhh
Q 000522 508 WATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQA 585 (1445)
Q Consensus 508 ~~~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~ 585 (1445)
..... ..+.++++|+|.+..+.+|.|.++++..+...+..|+..+...+..+.+++.+++|+.++++.++..+.. .
T Consensus 368 ~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~- 445 (694)
T TIGR01846 368 IELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-G- 445 (694)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-C-
Confidence 22222 2234567888888888999999999999999999999999999999999999999999999765432110 0
Q ss_pred cCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCC
Q 000522 586 ANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1445)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~ 665 (1445)
... ....+..++++|++|+|+++. +++|+|+||++++||.++|+|+||||||||+++|+|+++|++
T Consensus 446 --~~~--------~~~~~~~i~~~~vsf~y~~~~----~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 446 --LAA--------LPELRGAITFENIRFRYAPDS----PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred --CCC--------CCCCCCeEEEEEEEEEcCCCC----ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 000 012235799999999997432 235999999999999999999999999999999999999999
Q ss_pred eEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000522 666 GSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731 (1445)
Q Consensus 666 G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g 731 (1445)
|+|.++| .|+||+|+|++|++||+|||.++.+ .++++..++++.++++++++.+|+|.+|.+|++|
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 9999987 4899999999999999999999764 6788899999999999999999999999999999
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEE
Q 000522 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1445)
Q Consensus 732 ~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i 811 (1445)
.+||||||||++||||++++|+|++||||||+||+++++.+.+. +.. ..+++|+|++||+++.++.||+|++|++|++
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i 669 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQI 669 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999987 333 4568999999999999999999999999999
Q ss_pred EEecCHhHHHhccccCcc
Q 000522 812 KWIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 812 ~~~g~~~~~~~~~~~~~~ 829 (1445)
+++|+++++++..+.+.+
T Consensus 670 ~~~g~~~~l~~~~~~y~~ 687 (694)
T TIGR01846 670 AESGRHEELLALQGLYAR 687 (694)
T ss_pred EEeCCHHHHHHcCChHHH
Confidence 999999999876554433
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=626.26 Aligned_cols=510 Identities=16% Similarity=0.148 Sum_probs=382.3
Q ss_pred HHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000522 907 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986 (1445)
Q Consensus 907 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p 986 (1445)
+.++...+....++.++.+.+.... ... ..+..++++.++..++.++..+.....+.+...+++.++++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~i~~~i~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~ 100 (555)
T TIGR01194 26 LGLAGGLAIIALLASINNAIHEENF--LGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAP 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444555555666666542110 000 11222334445556667777778888899999999999999999999
Q ss_pred ccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1066 (1445)
Q Consensus 987 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l 1066 (1445)
+.||++.++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|.+.++++.++.+...+..+..+..++.
T Consensus 101 ~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~ 179 (555)
T TIGR01194 101 IEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKF 179 (555)
T ss_pred HHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987753 55666666666677777777777665554433333223222222222233
Q ss_pred HHHHHhhcchhHhHHHHhhccHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000522 1067 RRLDSVSRSPIYASFTETLNGSSTIRAFKSED--YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1144 (1445)
Q Consensus 1067 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~ 1144 (1445)
.+......+.+.+.+.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+.+ ++..
T Consensus 180 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 256 (555)
T TIGR01194 180 FHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLI---GCAL 256 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 33333455678899999999999999999954 556677776666665554332222221111122211111 1111
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc-cc---cC-CCC--CCCC
Q 000522 1145 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE-LC---GY-QSL--SPDW 1217 (1445)
Q Consensus 1145 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~-~~---~~-~~~--~~~w 1217 (1445)
+.+.. .+..+.|.+...+.+...+..++..+...+.++++...|.+|+.++.+.+.++ .. .. ... .+..
T Consensus 257 ~~~~~----~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 332 (555)
T TIGR01194 257 FAAAM----FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHD 332 (555)
T ss_pred HHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccC
Confidence 11110 12356788888888888999999999999999999999999999997632221 10 00 000 0111
Q ss_pred CCCccEEEEEEEEEeCCC---CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH
Q 000522 1218 PFQGLIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294 (1445)
Q Consensus 1218 p~~g~I~f~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~ 1294 (1445)
...+.|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+.+++.+
T Consensus 333 ~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 333 KSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRD 412 (555)
T ss_pred CCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 234689999999999753 23699999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
++|+++++|||||++|++|+|+|+.+ ..+|++++++++.++++++++.+ |+||. .+||||||||++||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAW 485 (555)
T ss_pred HHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999743 46789999999999999999988 99984 58999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHH-h-CCCcEEEEeccChhHHhhcCEEEEEeCCeEeee
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISS-E-CKGMTVITIAHRISTVLNMDEILILDHGHLPHC 1436 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~-~-~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~ 1436 (1445)
+++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999887643 3 468999999999999999999999999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-64 Score=682.83 Aligned_cols=248 Identities=21% Similarity=0.294 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHHHHhh--cCCccccccC--CCCCCCCCCCc--cEEEEEEEEEeC--CCCCccceeeeEEEeCCcEEE
Q 000522 1183 FTETEKEMVSLERVLEYM--DVPQEELCGY--QSLSPDWPFQG--LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVG 1254 (1445)
Q Consensus 1183 ~~~~e~~~~sv~Ri~~~~--~~~~e~~~~~--~~~~~~wp~~g--~I~f~nVs~~Y~--~~~~~vL~~isl~I~~Gekvg 1254 (1445)
..+.|..+.++||..++. +.++|..... ..++. ..| .++++||+++|+ ++.+++|+|||++|+|||++|
T Consensus 717 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 793 (1394)
T TIGR00956 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793 (1394)
T ss_pred ccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEE
Confidence 345677778899988763 2333321111 11111 134 479999999995 334579999999999999999
Q ss_pred EECCCCCCHHHHHHHHhcCCC---CCCcEEEECCeeCCCCChHhhhcceEEEcCCCccc-CccHHHhcCCC------CCC
Q 000522 1255 IVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNLDPF------HMN 1324 (1445)
Q Consensus 1255 IvGrTGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF-~gTIReNLdp~------~~~ 1324 (1445)
|+||||||||||+++|.|+.+ |++|+|.+||.++. ..+|++++||||++.++ ..||||||++. ...
T Consensus 794 I~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999999998 78899999999985 35789999999997654 56999999742 122
Q ss_pred ChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC-EEEEeccccCCCHHHHHHHHHH
Q 000522 1325 DDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK-VLCLDECTANVDAQTASILQNA 1399 (1445)
Q Consensus 1325 sd~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~-ILlLDEaTS~lD~~te~~Iq~~ 1399 (1445)
++++ +.++++..++.+ -.|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|++.
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~-----~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~ 944 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMES-----YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKL 944 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChh-----hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHH
Confidence 3333 445566665544 25888888888999999999999999999997 9999999999999999999999
Q ss_pred HHHh-CCCcEEEEeccChhHH--hhcCEEEEEeCC-eEeeecCCCCC
Q 000522 1400 ISSE-CKGMTVITIAHRISTV--LNMDEILILDHG-HLPHCGCAAAP 1442 (1445)
Q Consensus 1400 I~~~-~~~~TvI~IaHrl~ti--~~~DrI~Vl~~G-~vvE~G~p~~~ 1442 (1445)
|++. .+|+|||+++|+++.. ..||+|++|++| +++++|++.+.
T Consensus 945 L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~ 991 (1394)
T TIGR00956 945 MRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGEN 991 (1394)
T ss_pred HHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccc
Confidence 9886 4689999999999974 569999999997 99999998653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-65 Score=635.68 Aligned_cols=442 Identities=23% Similarity=0.324 Sum_probs=337.6
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC--CCeEEEEcC----------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG---------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~--~~G~i~~~~---------- 672 (1445)
.++++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFGG---V---KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeCC---e---EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 5889999999852 2 359999999999999999999999999999999999986 899999875
Q ss_pred ----eEEEEcCCCCCCCc-cHHHHHhcCCCC------Chh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000522 673 ----SIAYVPQVPWILSG-TIRDNILFGKNY------DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1445)
Q Consensus 673 ----~i~y~~Q~p~l~~~-ti~~nI~~g~~~------~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGG 737 (1445)
.++||+|+|.++.. |++||+.++... +.+ +.+++++..++.. .......+||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 147 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLG 147 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHH
Confidence 38999999988765 999999986431 211 2233344433321 223456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecC
Q 000522 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 738 QkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1445)
||||++||||+..+|+++||||||++||+...+.+++. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI-IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 99999999999999999999999999999999988875 33212357899999999999875 99999999999987665
Q ss_pred HhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhhh
Q 000522 817 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 896 (1445)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 896 (1445)
.+++.. .+.
T Consensus 227 ~~~~~~-----------------------------------------------------~~~------------------ 235 (506)
T PRK13549 227 AAGMTE-----------------------------------------------------DDI------------------ 235 (506)
T ss_pred cccCCH-----------------------------------------------------HHH------------------
Confidence 322100 000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 897 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1445)
Q Consensus 897 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~ 976 (1445)
+..+..
T Consensus 236 -------------------------~~~~~~------------------------------------------------- 241 (506)
T PRK13549 236 -------------------------ITMMVG------------------------------------------------- 241 (506)
T ss_pred -------------------------HHHhhC-------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056 (1445)
Q Consensus 977 ~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~ 1056 (1445)
T Consensus 242 -------------------------------------------------------------------------------- 241 (506)
T PRK13549 242 -------------------------------------------------------------------------------- 241 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000522 1057 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1136 (1445)
Q Consensus 1057 ~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~ 1136 (1445)
+
T Consensus 242 -----------------~-------------------------------------------------------------- 242 (506)
T PRK13549 242 -----------------R-------------------------------------------------------------- 242 (506)
T ss_pred -----------------c--------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCC
Q 000522 1137 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1216 (1445)
Q Consensus 1137 ~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~ 1216 (1445)
. .. . . .+.+. ++
T Consensus 243 --------------~--~~---~---------------------------------------~--~~~~~------~~-- 254 (506)
T PRK13549 243 --------------E--LT---A---------------------------------------L--YPREP------HT-- 254 (506)
T ss_pred --------------C--cc---c---------------------------------------c--ccccc------cC--
Confidence 0 00 0 0 00000 00
Q ss_pred CCCCccEEEEEEEEEeCC-CCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCeeCCCCCh-
Q 000522 1217 WPFQGLIEFQNVTMRYKP-SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNIINTPV- 1293 (1445)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~-~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-~~~G~I~IDG~di~~i~~- 1293 (1445)
+....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.|+...+.
T Consensus 255 -~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 255 -IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred -CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 01125899999999953 23469999999999999999999999999999999999999 599999999999865543
Q ss_pred HhhhcceEEEcCCC---cccC-ccHHHhcCCCC--CC------ChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCCh
Q 000522 1294 RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFH--MN------DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSV 1360 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp---~lF~-gTIReNLdp~~--~~------sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSg 1360 (1445)
+..|++++|+||+| .+|+ -|+.+|+.... .. +.++ .+....+.++.+|++. ........|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRLKVKTASPELAIARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhcCccCCCcccccccCCH
Confidence 45677899999997 3665 59999996421 11 1111 1112334445556642 34555668999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecC
Q 000522 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~ 1438 (1445)
|||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|++|+++..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998753 48999999999999876 89999999999999998
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
+++.
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 8775
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=619.73 Aligned_cols=534 Identities=19% Similarity=0.208 Sum_probs=417.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSG---HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 348 (1445)
Q Consensus 273 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~---~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 348 (1445)
+++.+++.++..+++.++..++..+.|.+++.+++... .+.. .......+++++++.++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888999999999999999999998642 2211 0111112333444556677777777788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHhhHhHHHHHHH
Q 000522 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVAL---YLLYTQVKFAFVSG 424 (1445)
Q Consensus 349 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~---~lL~~~lg~a~l~~ 424 (1445)
++...+...+|+|.++++.....+.+.|++++.++.|++.+..+.. .+..+....+.+++++ +.+.+.+++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888999999999999999998654 3444444444443333 33334444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1445)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1445)
+++. ...+..++.++.++..++..+..++..+.+.|.++|+++||.||.|+.+.+++++..++-.+...+.....+..
T Consensus 170 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLL--LLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22233556677778888888999999999999999999999999999998888877655444444444443333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Q 000522 505 VFFWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSL-ISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581 (1445)
Q Consensus 505 ~~~~~~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l-~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~ 581 (1445)
..+..... ..+.++.+|.+. .++.++++..++++.+..++ ..|+..++..+..+.++..+.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22222111 222345566666 46778999888877665443 468888899999999999999999999976532110
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCc
Q 000522 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~ 661 (1445)
... .+. ......++++|++|+|+++. +++|+|+||++++||.++|+||||||||||+++|+|++
T Consensus 327 ~~~---~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 327 PTT---STA---------AADQVSLTLNNVSFTYPDQP----QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred Ccc---cCC---------CCCCCeEEEEEEEEECCCCC----CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 000 000 11235699999999996421 24599999999999999999999999999999999999
Q ss_pred cCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccc
Q 000522 662 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 727 (1445)
Q Consensus 662 ~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~v 727 (1445)
+|++|+|.++| .|+||||+|++|++||+|||.++.+ .++++..++++.++++++++. |+|++|.+
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~v 469 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWL 469 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchh
Confidence 99999999987 4999999999999999999999875 678899999999999999999 99999999
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEe
Q 000522 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 807 (1445)
Q Consensus 728 g~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~ 807 (1445)
||+|.+||||||||++||||++++|++++||||||+||+++++++.+. +.. ..+++|+|++|||++.++.||+|++|+
T Consensus 470 ge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~-~~~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAE-HAQNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecChhHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999887 433 456899999999999999999999999
Q ss_pred CCEEEEecCHhHHHhccccCc
Q 000522 808 KGQVKWIGSSADLAVSLYSGF 828 (1445)
Q Consensus 808 ~G~i~~~g~~~~~~~~~~~~~ 828 (1445)
+|++++.|+++|++++++.+.
T Consensus 548 ~G~i~~~g~~~~l~~~~g~y~ 568 (574)
T PRK11160 548 NGQIIEQGTHQELLAQQGRYY 568 (574)
T ss_pred CCeEEEeCCHHHHHhcCcHHH
Confidence 999999999999987765443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=617.73 Aligned_cols=520 Identities=19% Similarity=0.226 Sum_probs=415.6
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 276 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM 355 (1445)
Q Consensus 276 ~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~ 355 (1445)
.+++.++..+++.++..++..+.|++++.++|.+....+....+.+++.++++.++..++.....+...+.+.++...+.
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888889999999999999999999765322223334455566667777888888888889999999999999
Q ss_pred HHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHH--HHHHHhhHhHHHHHHHHHHHHHH
Q 000522 356 TIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGV--ALYLLYTQVKFAFVSGLAITILL 431 (1445)
Q Consensus 356 ~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~p~~i~i--~~~lL~~~lg~a~l~~~~~~~~~ 431 (1445)
..+|+|.++++... .+...+.++.|++++.+.... +..+...++.++. .++.+.+.+++.+++++++ .
T Consensus 83 ~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l---~ 154 (544)
T TIGR01842 83 QPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVV---L 154 (544)
T ss_pred HHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---H
Confidence 99999999998732 245567788999999876542 3334444443333 2333444455444433332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 432 IPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 511 (1445)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~ 511 (1445)
..+..+..++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777788888999999999999999999999999999999999988876665555544444433332222222
Q ss_pred H--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCC
Q 000522 512 P--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSP 589 (1445)
Q Consensus 512 ~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1445)
. ..+.++++|.|.+.++.+|++.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.++..+.. .+
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-----~~ 309 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-----CC
Confidence 1 2234567888888889999999999999999999999999999999999999999999999765432110 00
Q ss_pred CcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEE
Q 000522 590 SYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1445)
Q Consensus 590 ~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~ 669 (1445)
. +..+..++++|++|+|+..+ +++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.
T Consensus 310 ~---------~~~~~~i~~~~v~~~y~~~~----~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 310 L---------PEPEGHLSVENVTIVPPGGK----KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred C---------CCCCCeEEEEEEEEEcCCCC----ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 0 11234699999999996421 2459999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEcCCCCCCCccHHHHHhcCC-CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 670 ASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 670 ~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
++| .++||||+|++|++|++|||.++. +.+++++.++++.+++++.++.+|+|++|.+|++|.+||
T Consensus 377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 456 (544)
T TIGR01842 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456 (544)
T ss_pred ECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence 986 499999999999999999998655 478888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEec
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g 815 (1445)
||||||++||||++++|+++|||||||+||+++++.+.+. +.....+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence 9999999999999999999999999999999999999886 333123579999999999999899999999999999999
Q ss_pred CHhHHHh
Q 000522 816 SSADLAV 822 (1445)
Q Consensus 816 ~~~~~~~ 822 (1445)
+++++.+
T Consensus 536 ~~~~l~~ 542 (544)
T TIGR01842 536 ERDEVLA 542 (544)
T ss_pred CHHHHhh
Confidence 9998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=622.89 Aligned_cols=533 Identities=19% Similarity=0.210 Sum_probs=413.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352 (1445)
Q Consensus 273 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~ 352 (1445)
.++.++..++..++..++..++.++.|+++..++|.+.++.. . ..+++.++++.++..+......+...+...++|.
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--I-FPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778888999999999999999999998765321 1 1112222222333333344445566778888899
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHhhHhHHHHHHHHHHH
Q 000522 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVA---LYLLYTQVKFAFVSGLAIT 428 (1445)
Q Consensus 353 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~---~~lL~~~lg~a~l~~~~~~ 428 (1445)
.+...+|+|.++++.....+.+.|++.+.++.|++.+..... .+..+....+..++. ++.+.+.+++.++++ +
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~---~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVL---G 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 999999999999999888889999999999999999875432 333333333222222 223333444443333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1445)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1445)
++...+..++.++..+.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.-++-.+...+..........+.
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566778888888888999999999999999999999999999998777776654333333222222222221111
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhc
Q 000522 509 --ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1445)
Q Consensus 509 --~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~ 586 (1445)
......+.+++++.|.+..+.+|++.+++++.++..+..|+..+...+..+.++..+++|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-- 324 (588)
T PRK13657 247 RAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG-- 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC--
Confidence 1112234556778888888999999999999999999999999999999999999999999999876432111000
Q ss_pred CCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCe
Q 000522 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1445)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G 666 (1445)
... ....+..|+++|++|+|+.+ + ++|+|+||++++|++++|+|+||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~I~~~~vsf~y~~~--~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 325 -AID--------LGRVKGAVEFDDVSFSYDNS--R---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred -CCC--------cCCCCCeEEEEEEEEEeCCC--C---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 000 01123469999999999632 2 359999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
+|.++| .|+||||+|++|++||||||.++++ .++++..++++.+++++.+..+|+|.+|.+|++|.
T Consensus 391 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~ 470 (588)
T PRK13657 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470 (588)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCC
Confidence 999987 6999999999999999999999864 67788999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEE
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~ 812 (1445)
+||||||||++||||++++|+|++||||||+||+++++.+++.+ .. ..+++|+|+||||++.++.||+|++|++|++.
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998873 33 44689999999999999999999999999999
Q ss_pred EecCHhHHHhccccCcc
Q 000522 813 WIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 813 ~~g~~~~~~~~~~~~~~ 829 (1445)
+.|+++++++..+.+.+
T Consensus 549 ~~g~~~~l~~~~~~y~~ 565 (588)
T PRK13657 549 ESGSFDELVARGGRFAA 565 (588)
T ss_pred EeCCHHHHHHCCChHHH
Confidence 99999999866544433
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=631.28 Aligned_cols=439 Identities=21% Similarity=0.331 Sum_probs=335.5
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 5 YISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred eEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 4789999998852 2359999999999999999999999999999999999999999999875
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC-----C-----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 673 --SIAYVPQVPWILSG-TIRDNILFGKN-----Y-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~-----~-----~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
.++|++|++.++.. |++||+.++.. + +. ++..++++.+++.. .......+||
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 147 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLS 147 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCC
Confidence 38999999987765 99999987532 0 11 12334444444432 1234556899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||++++|++|++++.
T Consensus 148 gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 148 ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI-MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999999988876 32212347899999999999875 999999999999877
Q ss_pred cCHhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHh
Q 000522 815 GSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 894 (1445)
Q Consensus 815 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 894 (1445)
|+++++... +.. ....+
T Consensus 227 g~~~~~~~~------------------------------------------------~~~---~~~~~------------ 243 (510)
T PRK09700 227 GMVSDVSND------------------------------------------------DIV---RLMVG------------ 243 (510)
T ss_pred cchhhCCHH------------------------------------------------HHH---HHhcC------------
Confidence 765432100 000 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 895 FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 974 (1445)
Q Consensus 895 ~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~l 974 (1445)
.
T Consensus 244 ------------------------------------~------------------------------------------- 244 (510)
T PRK09700 244 ------------------------------------R------------------------------------------- 244 (510)
T ss_pred ------------------------------------C-------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000522 975 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1054 (1445)
Q Consensus 975 h~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~ 1054 (1445)
+
T Consensus 245 -----------~-------------------------------------------------------------------- 245 (510)
T PRK09700 245 -----------E-------------------------------------------------------------------- 245 (510)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000522 1055 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAA 1134 (1445)
Q Consensus 1055 i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~ 1134 (1445)
.. .
T Consensus 246 -----------~~-----~------------------------------------------------------------- 248 (510)
T PRK09700 246 -----------LQ-----N------------------------------------------------------------- 248 (510)
T ss_pred -----------cc-----c-------------------------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCC
Q 000522 1135 FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1214 (1445)
Q Consensus 1135 ~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~ 1214 (1445)
.. .. ..+. ..++
T Consensus 249 ----------------~~-~~----------------------------------------------~~~~-----~~~~ 260 (510)
T PRK09700 249 ----------------RF-NA----------------------------------------------MKEN-----VSNL 260 (510)
T ss_pred ----------------cc-cc----------------------------------------------cccc-----cccC
Confidence 00 00 0000 0000
Q ss_pred CCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh-
Q 000522 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV- 1293 (1445)
Q Consensus 1215 ~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~- 1293 (1445)
+....++++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 261 ---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 261 ---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL 333 (510)
T ss_pred ---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHH
Confidence 0112599999998763 38999999999999999999999999999999999999999999999999876543
Q ss_pred HhhhcceEEEcCCC---cccCc-cHHHhcCCCCCC------------ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCC
Q 000522 1294 RDLRGRFAVVPQSP---FLFEG-SLRDNLDPFHMN------------DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGI 1356 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp---~lF~g-TIReNLdp~~~~------------sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~ 1356 (1445)
+.+|++++|+||++ .+|++ |+++|+...... ...+ ++....+.++.+|+. ........
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhcCCCCCCccCccc
Confidence 45678999999984 57765 999998753210 1111 111223444555664 34455566
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEe
Q 000522 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLP 1434 (1445)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vv 1434 (1445)
.||||||||++|||||+++|+||||||||++||..+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|+++
T Consensus 409 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998753 48999999999998765 8999999999999
Q ss_pred eecCC
Q 000522 1435 HCGCA 1439 (1445)
Q Consensus 1435 E~G~p 1439 (1445)
+.+++
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 98876
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=617.70 Aligned_cols=522 Identities=20% Similarity=0.238 Sum_probs=412.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000522 288 KVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVR 366 (1445)
Q Consensus 288 ~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~ 366 (1445)
.++..++..+.|++++.++|.+.... .....+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556677889999999999875422 22223334444555566677777666777788899999999999999999999
Q ss_pred ccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 367 LAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKF-AFVSGLAITILLIPVNKWIANLIAN 444 (1445)
Q Consensus 367 ~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~p~~i~i~~~lL~~~lg~-a~l~~~~~~~~~~~~~~~~~~~~~~ 444 (1445)
...+.+.+.|++.+.++.|++.+.... ..+..++..++.+++++++++..++| .+++.++++++...+...+.+++.+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888899999999999999998654 34555666555544444333223333 2223333333344455666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000522 445 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP--TLFSLFTFGL 522 (1445)
Q Consensus 445 ~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~ 522 (1445)
..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+..... ..+.++.+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888899999999999999999999998888776544333333333333332222211111 2233456777
Q ss_pred HHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccCCCccCCCC
Q 000522 523 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSK 602 (1445)
Q Consensus 523 ~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1445)
|.+.++.+|++.+++++.+...+..|+..+++.+..+.+++++.+||.++++.++..+... .+ .+..
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~----~~---------~~~~ 310 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS----EP---------VPEG 310 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC----CC---------CCCC
Confidence 8888899999999999999999999999999999999999999999999997653211000 00 0112
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1445)
+..++++|++|+|+..+ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~I~~~~v~~~y~~~~----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 311 RGELDVNIRQFTYPQTD----HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386 (569)
T ss_pred CCcEEEEEEEEECCCCC----CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH
Confidence 34689999999997431 2459999999999999999999999999999999999999999999986
Q ss_pred ---eEEEEcCCCCCCCccHHHHHhcCC-CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000522 673 ---SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARal 748 (1445)
.++||+|+|++|++|++|||.++. +.++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||||+
T Consensus 387 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 489999999999999999999985 4678899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhccccCc
Q 000522 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGF 828 (1445)
Q Consensus 749 y~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 828 (1445)
+++|+++|||||||+||+++++++.+. +.. +.+++|+|++||+++.++.||+|++|++|++++.|+++++.++.+.+.
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~-l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~ 544 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHN-LRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYR 544 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHH
Confidence 999999999999999999999999987 433 457899999999999999999999999999999999999987655443
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=636.35 Aligned_cols=449 Identities=25% Similarity=0.344 Sum_probs=339.2
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 672 (1445)
.++++|+++.|+.... ...+|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~--~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQT--VRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecCCCC--ceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 5889999999853211 12469999999999999999999999999999999999986 799998754
Q ss_pred ----------eEEEEcCCCC--CCC-ccHHHHHhcCC----CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000522 673 ----------SIAYVPQVPW--ILS-GTIRDNILFGK----NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731 (1445)
Q Consensus 673 ----------~i~y~~Q~p~--l~~-~ti~~nI~~g~----~~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g 731 (1445)
.+||++|+|. +++ .|+++|+.++. ..+ .++.+++++.+++.... .......
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~ 154 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYP 154 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCC
Confidence 3899999985 444 49999986421 122 23445566666664211 0123456
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCC
Q 000522 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKG 809 (1445)
Q Consensus 732 ~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G 809 (1445)
.+|||||||||+||||++.+|+++||||||++||+...+.+.+. +..... .++|+|+|||+++.+.. ||+|++|++|
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 78999999999999999999999999999999999999988875 322112 37899999999998875 9999999999
Q ss_pred EEEEecCHhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhH
Q 000522 810 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 889 (1445)
Q Consensus 810 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 889 (1445)
++++.|+++++.... .. .
T Consensus 234 ~i~~~g~~~~~~~~~---------------------------------------------------------~~-~---- 251 (529)
T PRK15134 234 RCVEQNRAATLFSAP---------------------------------------------------------TH-P---- 251 (529)
T ss_pred EEEEeCCHHHHhhCC---------------------------------------------------------CC-H----
Confidence 999887765542100 00 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 890 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969 (1445)
Q Consensus 890 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~ 969 (1445)
+.+
T Consensus 252 --~~~--------------------------------------------------------------------------- 254 (529)
T PRK15134 252 --YTQ--------------------------------------------------------------------------- 254 (529)
T ss_pred --HHH---------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 000522 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049 (1445)
Q Consensus 970 ~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~ 1049 (1445)
T Consensus 255 -------------------------------------------------------------------------------- 254 (529)
T PRK15134 255 -------------------------------------------------------------------------------- 254 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000522 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1129 (1445)
Q Consensus 1050 ~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1129 (1445)
.++. . .+
T Consensus 255 -------~~~~------------~-~~----------------------------------------------------- 261 (529)
T PRK15134 255 -------KLLN------------S-EP----------------------------------------------------- 261 (529)
T ss_pred -------HHHH------------h-Cc-----------------------------------------------------
Confidence 0000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Q 000522 1130 QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209 (1445)
Q Consensus 1130 ~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~ 1209 (1445)
.. ++..
T Consensus 262 ------------------------~~-----------------------------------------------~~~~--- 267 (529)
T PRK15134 262 ------------------------SG-----------------------------------------------DPVP--- 267 (529)
T ss_pred ------------------------cc-----------------------------------------------cccc---
Confidence 00 0000
Q ss_pred CCCCCCCCCCCccEEEEEEEEEeCC---------CCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Q 000522 1210 YQSLSPDWPFQGLIEFQNVTMRYKP---------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1445)
Q Consensus 1210 ~~~~~~~wp~~g~I~f~nVs~~Y~~---------~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1280 (1445)
.++. ....++++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+
T Consensus 268 --~~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~ 341 (529)
T PRK15134 268 --LPEP---ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE 341 (529)
T ss_pred --cCCC---CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE
Confidence 0000 0114899999999952 12469999999999999999999999999999999999995 8999
Q ss_pred EEECCeeCCCCChHh---hhcceEEEcCCC--cccCc-cHHHhcCCCC-----CCChHHHHHHHHHccHHHHHHhCCCc-
Q 000522 1281 ILVDGLNIINTPVRD---LRGRFAVVPQSP--FLFEG-SLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLE- 1348 (1445)
Q Consensus 1281 I~IDG~di~~i~~~~---lR~~i~~VpQdp--~lF~g-TIReNLdp~~-----~~sd~ei~~aL~~~~l~~~i~~lgLd- 1348 (1445)
|.+||.++...+... +|++++||||+| .+|+. |+++|+.... ..+..+. +..+.+.++.+|++
T Consensus 342 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~ 416 (529)
T PRK15134 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAVMEEVGLDP 416 (529)
T ss_pred EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHHHHHcCCCH
Confidence 999999998776543 477899999998 36664 9999996421 0111111 11123344445665
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEE
Q 000522 1349 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEI 1425 (1445)
Q Consensus 1349 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI 1425 (1445)
........+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|
T Consensus 417 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 24556667899999999999999999999999999999999999999999998764 37899999999999875 8999
Q ss_pred EEEeCCeEeeecCCCC
Q 000522 1426 LILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1426 ~Vl~~G~vvE~G~p~~ 1441 (1445)
++|++|++++.|++++
T Consensus 497 ~~l~~G~i~~~~~~~~ 512 (529)
T PRK15134 497 IVLRQGEVVEQGDCER 512 (529)
T ss_pred EEEECCEEEEEcCHHH
Confidence 9999999999998865
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=563.46 Aligned_cols=530 Identities=20% Similarity=0.268 Sum_probs=446.1
Q ss_pred chHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 267 PSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKL 346 (1445)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~ 346 (1445)
.....+....++..++..+++..+.+++.++.|+++-++.|.+-.+.+......+.+....+|+++.+++....+...|+
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999999999999999998877777888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 000522 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-----NSFHDAWSLPFQIGVALYLLYTQVKFAF 421 (1445)
Q Consensus 347 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-----~~~~~~~~~p~~i~i~~~lL~~~lg~a~ 421 (1445)
+.++...|...||.-+++.+..........+.+ .|.+.+..+. ..+.+..+.|+.+++ +|+++..+|+.+
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~~a 165 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999976554433222222222 3556666554 357788889999887 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 422 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 501 (1445)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~ 501 (1445)
++|.++++++..+|-.+++ +-.++-.+..-+|....+..++|..+|+.+|+.+...+++.+....-++...+..-..
T Consensus 166 ~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999888888877776665 4556677888899999999999999999999999999999887766666555443332
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q 000522 502 AWCVFFWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 579 (1445)
Q Consensus 502 ~~~~~~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~ 579 (1445)
.....+.-..-. -+.++..|+|++.++++|+|.++++-.+......|+......+.++..|+.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 222222111111 134567888999999999999999999999999999999999999999999999999999643221
Q ss_pred hhhhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000522 580 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1445)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g 659 (1445)
+... .. +.+++.+.++++++.-+.. .+++++|+||++++||.++||||||||||||.++|.|
T Consensus 323 ~~~m---~L-----------P~P~g~L~Ve~l~~~PPg~----~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 323 AERM---PL-----------PAPQGALSVERLTAAPPGQ----KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred cCCC---CC-----------CCCCceeeEeeeeecCCCC----CCcceecceeEecCCceEEEECCCCccHHHHHHHHHc
Confidence 1110 11 2356788999999964322 2456999999999999999999999999999999999
Q ss_pred CccCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHh-cCCCCChhhHHHHHHHhcchHHHhhccCCCcc
Q 000522 660 EMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725 (1445)
Q Consensus 660 ~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~-~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t 725 (1445)
..+|.+|.|++|| +|||.||+..||.|||+|||. |+.+.|+++.-++.++.+.++-|..+|+|++|
T Consensus 385 ~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred ccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 9999999999987 699999999999999999996 88888999999999999999999999999999
Q ss_pred cccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEE
Q 000522 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805 (1445)
Q Consensus 726 ~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~ 805 (1445)
.||+.|.+|||||||||+||||+|.+|.+++||||.|+||.+.+..+.+. +.....+|.|+|+||||++.+..+|+|.+
T Consensus 465 ~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A-i~~~k~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA-ILAAKARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH-HHHHHHcCCEEEEEecCHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999988888776 54446678899999999999999999999
Q ss_pred EeCCEEEEecCHhHHHhc
Q 000522 806 MDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 806 l~~G~i~~~g~~~~~~~~ 823 (1445)
|+||++...|+.+|++++
T Consensus 544 l~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 544 LQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCChHHhcCCHHHHHHH
Confidence 999999999999998765
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=633.29 Aligned_cols=434 Identities=22% Similarity=0.341 Sum_probs=332.1
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCc--cCCCeEEEEc------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--MLTHGSIHAS------------ 671 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~--~~~~G~i~~~------------ 671 (1445)
++++|++++|.. +.+|+|+||++++|++++|+||||||||||+++|+|.. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 357888988842 23599999999999999999999999999999999996 7999999875
Q ss_pred -----------C-----------------------eEEEEcCC-CCCCC-ccHHHHHhcCCC---CC----hhhHHHHHH
Q 000522 672 -----------G-----------------------SIAYVPQV-PWILS-GTIRDNILFGKN---YD----PQSYSETLK 708 (1445)
Q Consensus 672 -----------~-----------------------~i~y~~Q~-p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~ 708 (1445)
| .++|++|+ +.+++ .|++||+.++.. ++ .++..++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 38999997 56665 599999987521 22 134555666
Q ss_pred HhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceE
Q 000522 709 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTR 787 (1445)
Q Consensus 709 ~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ 787 (1445)
.++++... .....+|||||||||+||||++.+|+++||||||++||+.+.+.+.+. +..... .|+|+
T Consensus 155 ~~gl~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tv 222 (520)
T TIGR03269 155 MVQLSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA-LEEAVKASGISM 222 (520)
T ss_pred HcCChhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH-HHHHHHhcCcEE
Confidence 66664332 334568999999999999999999999999999999999999998775 332112 37899
Q ss_pred EEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccC
Q 000522 788 ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSV 866 (1445)
Q Consensus 788 ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1445)
|+|||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 223 iivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------------------------------------------- 259 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV------------------------------------------- 259 (520)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-------------------------------------------
Confidence 999999999875 999999999998765543221000
Q ss_pred CchhhHHHHHHHHhcCccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHH
Q 000522 867 SDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLC 946 (1445)
Q Consensus 867 ~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~ 946 (1445)
|. .
T Consensus 260 -------------------------~~---------------------------------~------------------- 262 (520)
T TIGR03269 260 -------------------------FM---------------------------------E------------------- 262 (520)
T ss_pred -------------------------HH---------------------------------h-------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHh
Q 000522 947 IFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVG 1026 (1445)
Q Consensus 947 ~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~ 1026 (1445)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHH
Q 000522 1027 LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1106 (1445)
Q Consensus 1027 ~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~ 1106 (1445)
....
T Consensus 263 --------------------------------------~~~~-------------------------------------- 266 (520)
T TIGR03269 263 --------------------------------------GVSE-------------------------------------- 266 (520)
T ss_pred --------------------------------------hchh--------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1107 HVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTET 1186 (1445)
Q Consensus 1107 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~ 1186 (1445)
. . .
T Consensus 267 --------------------------------------~-----~--~-------------------------------- 269 (520)
T TIGR03269 267 --------------------------------------V-----E--K-------------------------------- 269 (520)
T ss_pred --------------------------------------h-----c--c--------------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCC---CCCccceeeeEEEeCCcEEEEECCCCCCH
Q 000522 1187 EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGK 1263 (1445)
Q Consensus 1187 e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~---~~~~vL~~isl~I~~GekvgIvGrTGSGK 1263 (1445)
.++. +. ....++++|++++|+. +..++|+|+||+|++||++||+|+|||||
T Consensus 270 ---------------~~~~-------~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGK 323 (520)
T TIGR03269 270 ---------------ECEV-------EV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGK 323 (520)
T ss_pred ---------------cccc-------CC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCH
Confidence 0000 00 1125999999999953 23469999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEC-Ce---eCCCCC---hHhhhcceEEEcCCCcccCc-cHHHhcCCC-C-CCChHHHHHHH
Q 000522 1264 SSILNALFRLTPICGGQILVD-GL---NIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLDPF-H-MNDDLKIWSVL 1333 (1445)
Q Consensus 1264 STLl~~L~rl~~~~~G~I~ID-G~---di~~i~---~~~lR~~i~~VpQdp~lF~g-TIReNLdp~-~-~~sd~ei~~aL 1333 (1445)
|||+++|.|+++|++|+|.++ |. ++...+ ...+|++++|+||++.+|+. |+++|+... . ....++.
T Consensus 324 STLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~---- 399 (520)
T TIGR03269 324 TTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA---- 399 (520)
T ss_pred HHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH----
Confidence 999999999999999999996 64 344332 23567789999999988875 999999531 1 1111110
Q ss_pred HHccHHHHHHhCCCch-----hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CC
Q 000522 1334 EKCHVKEEVEAVGLET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KG 1406 (1445)
Q Consensus 1334 ~~~~l~~~i~~lgLdt-----~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~ 1406 (1445)
+....+.++.+|++. ........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+
T Consensus 400 -~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g 478 (520)
T TIGR03269 400 -RMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478 (520)
T ss_pred -HHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 111223344445542 2455566899999999999999999999999999999999999999999998764 37
Q ss_pred cEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1407 MTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1407 ~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
.|||+|||+++.+.. ||||++|++|++++.|+|++
T Consensus 479 ~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 899999999999876 89999999999999998754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-64 Score=626.82 Aligned_cols=435 Identities=21% Similarity=0.307 Sum_probs=334.2
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~i~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDKAFPG---V---KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEEEeCC---e---EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 4789999998852 2 359999999999999999999999999999999999999999999875
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCCC-------Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 --SIAYVPQVPWILSG-TIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
.++|++|+|.++.. |++||+.++... +. ++..++++.+++... ......+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~ 146 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGE 146 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHH
Confidence 38999999987764 999999986431 22 123344444444321 234456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCH
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~ 817 (1445)
|||++||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+.
T Consensus 147 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV-IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999988865 32212347899999999998865 999999999999876543
Q ss_pred hHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhhhh
Q 000522 818 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1445)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1445)
+++.. ++.
T Consensus 226 ~~~~~-----------------------------------------------------~~~------------------- 233 (501)
T PRK10762 226 ADLTE-----------------------------------------------------DSL------------------- 233 (501)
T ss_pred CcCCH-----------------------------------------------------HHH-------------------
Confidence 22100 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977 (1445)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ 977 (1445)
...+...
T Consensus 234 ------------------------~~~~~~~------------------------------------------------- 240 (501)
T PRK10762 234 ------------------------IEMMVGR------------------------------------------------- 240 (501)
T ss_pred ------------------------HHHhcCC-------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1057 (1445)
Q Consensus 978 ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~ 1057 (1445)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000522 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1137 (1445)
Q Consensus 1058 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~ 1137 (1445)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCC
Q 000522 1138 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1217 (1445)
Q Consensus 1138 ~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~w 1217 (1445)
.. . ..++.. ..+
T Consensus 241 -------------~~-~----------------------------------------------~~~~~~-----~~~--- 252 (501)
T PRK10762 241 -------------KL-E----------------------------------------------DQYPRL-----DKA--- 252 (501)
T ss_pred -------------Cc-c----------------------------------------------cccccc-----ccC---
Confidence 00 0 000000 000
Q ss_pred CCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh-Hhh
Q 000522 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDL 1296 (1445)
Q Consensus 1218 p~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~l 1296 (1445)
|..-.++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+
T Consensus 253 ~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~ 325 (501)
T PRK10762 253 PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325 (501)
T ss_pred CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 0112588999984 37999999999999999999999999999999999999999999999999977664 346
Q ss_pred hcceEEEcCCC---cccC-ccHHHhcCCCCC---------CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhH
Q 000522 1297 RGRFAVVPQSP---FLFE-GSLRDNLDPFHM---------NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQ 1362 (1445)
Q Consensus 1297 R~~i~~VpQdp---~lF~-gTIReNLdp~~~---------~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQ 1362 (1445)
|++++|+||+| .+|. -|+++|+..... .+..+. +....+.++.+|++ ...+.....|||||
T Consensus 326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 400 (501)
T PRK10762 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLFNIKTPSMEQAIGLLSGGN 400 (501)
T ss_pred HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence 78899999997 3555 599999964210 111111 11233444555663 34566667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAA 1440 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~ 1440 (1445)
|||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|+++
T Consensus 401 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 401 QQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999998864 48899999999998875 8999999999999999987
Q ss_pred CC
Q 000522 1441 AP 1442 (1445)
Q Consensus 1441 ~~ 1442 (1445)
+.
T Consensus 481 ~~ 482 (501)
T PRK10762 481 QA 482 (501)
T ss_pred cC
Confidence 65
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=613.01 Aligned_cols=528 Identities=23% Similarity=0.287 Sum_probs=418.2
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 356 (1445)
Q Consensus 277 ~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~ 356 (1445)
++ .++...++.++..++....|.++..+++.+.. .......+...+++++++..++...+.+...+.+.++...+..
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 77888888899999999999999999988761 1222233333444444456666666667777777999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hhHhHHHHHHHHHHHHHHH
Q 000522 357 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWS-LPFQIGVALYLL---YTQVKFAFVSGLAITILLI 432 (1445)
Q Consensus 357 ~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~-~p~~i~i~~~lL---~~~lg~a~l~~~~~~~~~~ 432 (1445)
.+|+|.++++...+.+...|++++.++.|++.+............ +++.++..+.++ .+.+++..+.++ +++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~ 166 (567)
T COG1132 90 DLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLIL---PLLA 166 (567)
T ss_pred HHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHH
Confidence 999999999998888888999999999999999987766422222 333333322222 233443333332 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 000522 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF--WAT 510 (1445)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~--~~~ 510 (1445)
....++.++..+..++..+..++..+.+.|.++|++.||.++.|+...++..+..++..+...+........... ...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555656678888888899999999999999999999999999876666655443333332222222222211 112
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCC
Q 000522 511 TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1445)
Q Consensus 511 ~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~ 590 (1445)
.-....++.++.+.+..+.++.+.+.+.+.++..+..|+..+...+..+..+..+.+|+.++++.++...... .+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~~- 321 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP----DP- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC----CC-
Confidence 2223345566777777888999999999999999999999999999999999999999999998744211000 00
Q ss_pred cccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEE
Q 000522 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1445)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 670 (1445)
....+..|+++|++|+|+++ +++|+|+||++++||.++||||+||||||++++|+|+++|++|+|.+
T Consensus 322 --------~~~~~~~I~f~~vsf~y~~~-----~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 322 --------LKDTIGSIEFENVSFSYPGK-----KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred --------CCCCCCeEEEEEEEEEcCCC-----CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 01234569999999999742 34599999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 671 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
|| +||||||+|+||++||+|||.+|++ .++++..++++.+++++.++.+|+|++|.|||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 87 5999999999999999999999987 588899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecC
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1445)
|||||++||||++++|+|++||||||+||+++++.|.+.. .. +.++||+|+|+||++.+..||+|++|++|+|++.|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l-~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL-KK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH-HH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999874 32 457789999999999999999999999999999999
Q ss_pred HhHHHhccccCccc
Q 000522 817 SADLAVSLYSGFWS 830 (1445)
Q Consensus 817 ~~~~~~~~~~~~~~ 830 (1445)
|+|++++++.+.++
T Consensus 547 h~eLl~~~g~y~~l 560 (567)
T COG1132 547 HEELLAKGGLYARL 560 (567)
T ss_pred HHHHHHcCCHHHHH
Confidence 99999876655443
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=570.22 Aligned_cols=524 Identities=23% Similarity=0.279 Sum_probs=421.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000522 284 LGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCL 363 (1445)
Q Consensus 284 ~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L 363 (1445)
..++..+..+....|-.++-..++.+-..+.....+.++++++++.++.+++.....+..++.+.++|..|...+++|..
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666667777777766655443334455667778888899999999999999999999999999999999999
Q ss_pred cCCccccCCCChhHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000522 364 YVRLAERSEFSDGEIQTFMSVDTDRTVNLAN----SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 439 (1445)
Q Consensus 364 ~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~----~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~~~~~~~~~~ 439 (1445)
+++....+..++|+..+++..-+|.+...+. .+...-..|+-+.++++++.+.-|+..+..+.++.+++ ..++
T Consensus 85 ~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---ilvg 161 (559)
T COG4988 85 KLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---ILVG 161 (559)
T ss_pred hCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHH
Confidence 9998888888899999999999998887542 33444567888888888888877766665555444443 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 440 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMK----TRSSEVKHLSTRKYLDAWCVFFWATTPTLF 515 (1445)
Q Consensus 440 ~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~----~R~~El~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1445)
+..++..+++++.-..-....-+-|+|+.++|.|+..+...++|.+ .|+.-|+.++-...-.+..-++... .+..
T Consensus 162 ~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l-siAl 240 (559)
T COG4988 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL-SIAL 240 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5566777778888888888899999999999999988777766654 5666666665433222233333222 2222
Q ss_pred HHHHHHHHHHhC-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccC
Q 000522 516 SLFTFGLFALMG-HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISN 594 (1445)
Q Consensus 516 ~~~~f~~~~~~~-~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1445)
..+.+| +.+.+ ++++....+.++.+---+-.|+..+...+..-+++..+.+++..|++.|............
T Consensus 241 vAv~~g-~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~------ 313 (559)
T COG4988 241 VAVYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV------ 313 (559)
T ss_pred HHHHHH-HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc------
Confidence 233333 33445 6899999999999999999999999999999999999999999999877543311100000
Q ss_pred CCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--
Q 000522 595 GLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-- 672 (1445)
Q Consensus 595 ~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-- 672 (1445)
...+...+..+|.+|.|+..+ ++++|+||++++|++++|||+||||||||+++|+|+.+|++|+|.++|
T Consensus 314 ----~~~~~~ei~~~~l~~~y~~g~-----~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~ 384 (559)
T COG4988 314 ----ANEPPIEISLENLSFRYPDGK-----PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384 (559)
T ss_pred ----ccCCCceeeecceEEecCCCC-----cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcc
Confidence 012234555669999997531 459999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000522 673 -----------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1445)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkq 740 (1445)
+++||||+|.||+|||||||+++++ -+++...++++..+|.+.++. |+|.+|++||+|.+|||||+|
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHH
Confidence 5999999999999999999999987 568899999999999999998 999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHH
Q 000522 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 741 Rv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
||+||||+++++++|+||||||+||.++++.|.+. +.. +.++||+|+||||++.+..+|+|++|++|+++++|+++++
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~-l~~-l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L 541 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQA-LQE-LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL 541 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH-HHH-HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHH
Confidence 99999999999999999999999999999998887 443 6788999999999999999999999999999999999999
Q ss_pred HhccccCccc
Q 000522 821 AVSLYSGFWS 830 (1445)
Q Consensus 821 ~~~~~~~~~~ 830 (1445)
.++++.+..+
T Consensus 542 ~~~~~~y~~l 551 (559)
T COG4988 542 SEKQGLYANL 551 (559)
T ss_pred hhcCcHHHHH
Confidence 8877666554
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=607.40 Aligned_cols=507 Identities=21% Similarity=0.212 Sum_probs=400.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 278 GYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 356 (1445)
Q Consensus 278 ~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~ 356 (1445)
++.++..+++.++..++....|++++.++|.+. +.......+.+++.++++.++..++.....+...+++.++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999999874 3222223334455555666777788888888889999999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHhhHhHHHHHHHHHHHHHHH
Q 000522 357 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSGLAITILLI 432 (1445)
Q Consensus 357 ~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~---lL~~~lg~a~l~~~~~~~~~~ 432 (1445)
.+|+|.++++.....+.+.|+++|.++.|++.+.+... .+..+....+.+++++. .+.+.+++..+++++ +..
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~---l~~ 158 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAP---LIP 158 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHH
Confidence 99999999999888889999999999999999997654 35555544444433333 233444444333322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 433 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 512 (1445)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 512 (1445)
.+..++.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++.-++..+...+..........+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23355677777888888899999999999999999999999999999888876644433333333333332222222211
Q ss_pred HHH--HHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCC
Q 000522 513 TLF--SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 590 (1445)
Q Consensus 513 ~~~--~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~ 590 (1445)
.+. .++.++.+.+..+.++.+.+++++.+...+..|+..+...+..+.++..+++|+.++++.++.+.... ..+
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~- 314 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVT- 314 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCC-
Confidence 111 12234445555778999999999999999999999999999999999999999999997442111000 000
Q ss_pred cccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEE
Q 000522 591 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1445)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 670 (1445)
......++++|++|+|+..+ +++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.+
T Consensus 315 ---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 315 ---------AAPAPSLEFSGLSVAYPGRR----APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ---------CCCCCeEEEEEEEEECCCCC----cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 01224699999999997431 24599999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 671 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 671 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
+| .++||+|+|++|++||||||.++.+ .++++.+++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 382 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 461 (529)
T TIGR02857 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG 461 (529)
T ss_pred CCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence 87 4999999999999999999999864 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEE
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVM 806 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l 806 (1445)
|||||++||||++++|++++||||||+||+++++.+++. +.. ..+++|+|+||||++.+..||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999999887 444 45789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=622.66 Aligned_cols=447 Identities=22% Similarity=0.295 Sum_probs=332.2
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC--CCeEEEEcC-----------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG----------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~--~~G~i~~~~----------- 672 (1445)
++++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|.|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 578899998852 2359999999999999999999999999999999999987 799999875
Q ss_pred ---eEEEEcCCCCCCCc-cHHHHHhcCCCC-------Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000522 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGG 737 (1445)
.++|++|+|.++.. |++||+.++... +. ++.+++++.+++.... + .....+||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~~~~LSgG 145 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------V----TRPVGDYGGG 145 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------c----cCchhhCCHH
Confidence 38999999987765 999999886431 11 1233344444432111 0 1235689999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecC
Q 000522 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 738 QkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1445)
|||||+||||++.+|+++||||||++||+...+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 146 ~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (500)
T TIGR02633 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI-IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKD 224 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecC
Confidence 99999999999999999999999999999999988876 33212357899999999999876 99999999999875543
Q ss_pred HhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhhh
Q 000522 817 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 896 (1445)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 896 (1445)
.+++. . . . .
T Consensus 225 ~~~~~------------------------------------------------~-----~--------~--~-------- 233 (500)
T TIGR02633 225 MSTMS------------------------------------------------E-----D--------D--I-------- 233 (500)
T ss_pred cccCC------------------------------------------------H-----H--------H--H--------
Confidence 11100 0 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 897 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1445)
Q Consensus 897 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~ 976 (1445)
+....
T Consensus 234 -------------------------~~~~~-------------------------------------------------- 238 (500)
T TIGR02633 234 -------------------------ITMMV-------------------------------------------------- 238 (500)
T ss_pred -------------------------HHHHh--------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1056 (1445)
Q Consensus 977 ~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~ 1056 (1445)
T Consensus 239 -------------------------------------------------------------------------------- 238 (500)
T TIGR02633 239 -------------------------------------------------------------------------------- 238 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000522 1057 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1136 (1445)
Q Consensus 1057 ~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~ 1136 (1445)
.+
T Consensus 239 ----------------~~-------------------------------------------------------------- 240 (500)
T TIGR02633 239 ----------------GR-------------------------------------------------------------- 240 (500)
T ss_pred ----------------Cc--------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCC
Q 000522 1137 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1216 (1445)
Q Consensus 1137 ~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~ 1216 (1445)
. .. . ..+.+. .+
T Consensus 241 --------------~--~~---~-----------------------------------------~~~~~~-----~~--- 252 (500)
T TIGR02633 241 --------------E--IT---S-----------------------------------------LYPHEP-----HE--- 252 (500)
T ss_pred --------------c--cc---c-----------------------------------------cccccc-----cC---
Confidence 0 00 0 000000 00
Q ss_pred CCCCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCeeCCCCC-h
Q 000522 1217 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIINTP-V 1293 (1445)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-~~G~I~IDG~di~~i~-~ 1293 (1445)
+.+-.++++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+ .
T Consensus 253 -~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 253 -IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred -CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 011258999999999432 24699999999999999999999999999999999999995 8999999999986544 3
Q ss_pred HhhhcceEEEcCCC---cccC-ccHHHhcCCCCC--CCh-HHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHH
Q 000522 1294 RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFHM--NDD-LKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp---~lF~-gTIReNLdp~~~--~sd-~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQr 1365 (1445)
..+|++++++||++ .+|+ -|+++|+..... ... ..+...-.+....+.++.+|+.. ........||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 56788999999996 4666 499999975310 100 00000001112233444445532 2344456799999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++||||++++|++|||||||++||..+.+.+.+.|++.. ++.|||+|||+++.+.+ ||+|++|++|+++..++..+.
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999999988753 48899999999999876 899999999999988765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=621.34 Aligned_cols=448 Identities=21% Similarity=0.354 Sum_probs=341.1
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|.. +.+|+|+||++++|++++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 35899999999852 2359999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcCCCCCCCc-cHHHHHhcCCCCC---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 673 ---SIAYVPQVPWILSG-TIRDNILFGKNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~~---~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
.+||++|++.++.. |++||+.++.... +++..++++..++..+ ......+|||||||||+||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 152 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEIL 152 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHH
Confidence 38999999988765 9999999875322 2345556666665422 2344568999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHhcc
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVSL 824 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~~~ 824 (1445)
||++.+|+++||||||++||+...+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 153 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (510)
T PRK15439 153 RGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231 (510)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH
Confidence 999999999999999999999999988876 33212347899999999998865 9999999999999887765531100
Q ss_pred ccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhhhhHHHHHHH
Q 000522 825 YSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVI 904 (1445)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~ 904 (1445)
.
T Consensus 232 ------------------------------------------------~------------------------------- 232 (510)
T PRK15439 232 ------------------------------------------------I------------------------------- 232 (510)
T ss_pred ------------------------------------------------H-------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000522 905 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 984 (1445)
Q Consensus 905 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~ 984 (1445)
+..+... . ..
T Consensus 233 -----------------~~~~~~~---~-~~------------------------------------------------- 242 (510)
T PRK15439 233 -----------------IQAITPA---A-RE------------------------------------------------- 242 (510)
T ss_pred -----------------HHHHhCc---c-cc-------------------------------------------------
Confidence 0000000 0 00
Q ss_pred CcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 985 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1064 (1445)
Q Consensus 985 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr 1064 (1445)
.
T Consensus 243 -------------------------------------------------------------------------------~ 243 (510)
T PRK15439 243 -------------------------------------------------------------------------------K 243 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred HHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000522 1065 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1144 (1445)
Q Consensus 1065 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~ 1144 (1445)
+.+. . .+.
T Consensus 244 ~~~~-----~-------------------------------------~~~------------------------------ 251 (510)
T PRK15439 244 SLSA-----S-------------------------------------QKL------------------------------ 251 (510)
T ss_pred cccc-----c-------------------------------------ccc------------------------------
Confidence 0000 0 000
Q ss_pred HHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEE
Q 000522 1145 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1224 (1445)
Q Consensus 1145 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1224 (1445)
. . ..+... ...+ +..-.++
T Consensus 252 ------~--~----------------------------------------------~~~~~~----~~~~---~~~~~l~ 270 (510)
T PRK15439 252 ------W--L----------------------------------------------ELPGNR----RQQA---AGAPVLT 270 (510)
T ss_pred ------c--c----------------------------------------------cccccc----cccC---CCCceEE
Confidence 0 0 000000 0000 0112589
Q ss_pred EEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh-hhcceEEE
Q 000522 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVV 1303 (1445)
Q Consensus 1225 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~~V 1303 (1445)
++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|++++|+
T Consensus 271 ~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 343 (510)
T PRK15439 271 VEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343 (510)
T ss_pred EeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEEC
Confidence 999983 2699999999999999999999999999999999999999999999999998776654 46789999
Q ss_pred cCCC---cccCc-cHHHhcCCC--C--C-C-ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1304 PQSP---FLFEG-SLRDNLDPF--H--M-N-DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1304 pQdp---~lF~g-TIReNLdp~--~--~-~-sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
||++ .+|.. |+++|+... . . . ...+. +..+.+.++.+|++ .........||||||||++||||+
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 9996 36654 999998432 1 0 0 11111 11233445555775 455666678999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|+++..|+|++.
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999998753 48999999999999976 899999999999999998764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=664.60 Aligned_cols=534 Identities=19% Similarity=0.193 Sum_probs=381.9
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1445)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~ 965 (1445)
.+..+..++..++..+... +..++..++....++.++...+.....+.......|+.++++..++..++.....+....
T Consensus 289 ~~l~~~l~~~~~~~~~~~~-~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 367 (1495)
T PLN03232 289 PWLLRALNNSLGGRFWLGG-IFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGR 367 (1495)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555544333 334555666666677666655432211111111112222222222222222112222346
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 000522 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1445)
Q Consensus 966 ~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1445)
.+.+....+...+++++++.|..++++.++|+++||+++|++.+++... .+..+....+.++..++++.....+..++.
T Consensus 368 ~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~ 446 (1495)
T PLN03232 368 VGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQQLGVASLFG 446 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6777777888899999999999999999999999999999999998753 333333333333333322222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000522 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1445)
Q Consensus 1046 ~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1125 (1445)
+++.+++..+..++.+..+..++.....+....+.+.|.++|+++||+|+||+.+.+++.+..+...+..........+.
T Consensus 447 ~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~ 526 (1495)
T PLN03232 447 SLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFN 526 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333334444444455567788999999999999999999999999887766655554443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 000522 1126 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1205 (1445)
Q Consensus 1126 ~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e 1205 (1445)
......... ++.++.+.+.... .+..++|.+..++++...+..++..+...+..+..+.+|.+|+.++++.+++
T Consensus 527 ~~~~~~~~~-~~~~~~fg~~~v~-----~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~ 600 (1495)
T PLN03232 527 SFILNSIPV-VVTLVSFGVFVLL-----GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600 (1495)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 221111111 1111111111111 2345788888888999999999999999999999999999999999976654
Q ss_pred ccccCCCCCCCCCCCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Q 000522 1206 ELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1445)
Q Consensus 1206 ~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1284 (1445)
..... + +..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 601 ~~~~~--~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-- 675 (1495)
T PLN03232 601 ILAQN--P-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-- 675 (1495)
T ss_pred ccccc--C-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--
Confidence 21111 1 111234679999999999753 46799999999999999999999999999999999999999999763
Q ss_pred CeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhH
Q 000522 1285 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1362 (1445)
Q Consensus 1285 G~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQ 1362 (1445)
.+|++|+||||+|++|+|||||||.++.++++++++++++.|++.++++.+ |+||.|||+|.+|||||
T Consensus 676 ----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 676 ----------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred ----------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 468999999999999999999999999889999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHH-HHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I-q~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|||||||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+|+|.|+|++
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999876 556777778999999999999999999999999999999999876
Q ss_pred C
Q 000522 1442 P 1442 (1445)
Q Consensus 1442 ~ 1442 (1445)
+
T Consensus 826 L 826 (1495)
T PLN03232 826 L 826 (1495)
T ss_pred H
Confidence 5
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=602.25 Aligned_cols=533 Identities=18% Similarity=0.214 Sum_probs=414.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352 (1445)
Q Consensus 273 l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~ 352 (1445)
.++.+++.++..+++.++..++..+.|++++.++|.+...... ..+++.+++..++..+......+...++..++|.
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999999999999999999977543211 1111122223333444444445667788888999
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHhhHhHHHHHHHHHHH
Q 000522 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSGLAIT 428 (1445)
Q Consensus 353 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~---lL~~~lg~a~l~~~~~~ 428 (1445)
.+...+|+|.++++.....+.++|++++.++.|++.+..... .+..+....+.++++++ .+.+.+++.+++ ++
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~---~~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV---LG 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 999999999999999988888999999999999999986543 33344444444433322 233333333332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 508 (1445)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 508 (1445)
++...+..++.+++.+..++..+..++..+.+.|.++|+++||.+|.|+.+.+++++..++-.+...+..........+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677777788888888889999999999999999999999998888877754433333222222222222221
Q ss_pred HHH--HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhc
Q 000522 509 ATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 586 (1445)
Q Consensus 509 ~~~--~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~ 586 (1445)
... ...+.++.+|.|.+.++.++.+.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-- 324 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-- 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc--
Confidence 111 1223456678888888899999999999999999999999999999999999999999999975432110000
Q ss_pred CCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCe
Q 000522 587 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1445)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G 666 (1445)
.+. .+.....++++|++|+|+.+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~i~~~~v~~~y~~~-----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 325 -APE--------LPNVKGAVEFRHITFEFANS-----SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred -CCC--------CCCCCCeEEEEEEEEECCCC-----CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 000 01123469999999999632 2359999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 667 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 667 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
+|.++| .++||+|+|++|++|++|||.++.+ .+++..+++++.+++++.+..+|+|.+|.+|++|.
T Consensus 391 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~ 470 (585)
T TIGR01192 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 (585)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC
Confidence 999876 5899999999999999999999864 56777888999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEE
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~ 812 (1445)
+||||||||++||||++++|++++||||||+||+++++.+.+. +.. ..+++|+|++||+++.++.||+|++|++|+++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA-IDA-LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998876 433 45689999999999999999999999999999
Q ss_pred EecCHhHHHhccccCcc
Q 000522 813 WIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 813 ~~g~~~~~~~~~~~~~~ 829 (1445)
+.|+++++.++.+.+.+
T Consensus 549 ~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 549 EKGSFQELIQKDGRFYK 565 (585)
T ss_pred EECCHHHHHHCCChHHH
Confidence 99999999876655443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=648.04 Aligned_cols=217 Identities=21% Similarity=0.318 Sum_probs=183.0
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcc
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1445)
...|+++|++++|+....++|+|+||+|++||++||+|++|||||||+++|.|+.+|++|+|.++|.++.+ +....|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533579999999999999999999999999999999999999999999999999965 45678899
Q ss_pred eEEEcCCCcccCc-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
|||+||++.+++. |+||||..+. ..+++++.+. ..+.++.+||+...+.....||||||||+++||||+.+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999998875 9999996532 1222222211 12233334555445555567999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHh-CCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|+||+|||||++||+.+.+.+.+.|++. .+|+|||++||+++.+.. ||||++|++|++++.|+|+++
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999885 358999999999999875 899999999999999998765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=618.45 Aligned_cols=438 Identities=21% Similarity=0.294 Sum_probs=332.8
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 4 YLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred eEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 4789999999852 2359999999999999999999999999999999999999999998865
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC------CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 673 --SIAYVPQVPWILSG-TIRDNILFGKN------YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~------~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
.|+|++|+|.++.. |++||+.++.. .+. ++..++++.+++... ......+||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~ 146 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQR 146 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHH
Confidence 38999999988875 99999998631 121 234445555554321 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHh
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~ 818 (1445)
||++||||++.+|+++||||||++||+.+.+.+.+.+ .....+|+|+|++||+++.+.. ||+|++|++|+++..++..
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 225 (501)
T PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI-RELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDM 225 (501)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcc
Confidence 9999999999999999999999999999999888763 2212347899999999998865 9999999999987433200
Q ss_pred HHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhhhhH
Q 000522 819 DLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW 898 (1445)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~ 898 (1445)
+ . . . .+. +.
T Consensus 226 ~-------------~---------------------------~-------~------~~~-------------~~----- 234 (501)
T PRK11288 226 A-------------Q---------------------------V-------D------RDQ-------------LV----- 234 (501)
T ss_pred c-------------c---------------------------C-------C------HHH-------------HH-----
Confidence 0 0 0 0 000 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 899 FITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTL 978 (1445)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~l 978 (1445)
..+..
T Consensus 235 ------------------------~~~~~--------------------------------------------------- 239 (501)
T PRK11288 235 ------------------------QAMVG--------------------------------------------------- 239 (501)
T ss_pred ------------------------HHhcC---------------------------------------------------
Confidence 00000
Q ss_pred HHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 979 LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFF 1058 (1445)
Q Consensus 979 l~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~ 1058 (1445)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK11288 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000522 1059 YRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIIS 1138 (1445)
Q Consensus 1059 y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~ 1138 (1445)
+
T Consensus 240 ---------------~---------------------------------------------------------------- 240 (501)
T PRK11288 240 ---------------R---------------------------------------------------------------- 240 (501)
T ss_pred ---------------C----------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCC
Q 000522 1139 FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWP 1218 (1445)
Q Consensus 1139 ~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp 1218 (1445)
.. .. . ...++. + +
T Consensus 241 ------------~~-~~----------------------------------------~---~~~~~~--------~---~ 253 (501)
T PRK11288 241 ------------EI-GD----------------------------------------I---YGYRPR--------P---L 253 (501)
T ss_pred ------------Cc-cc----------------------------------------c---cccccc--------C---C
Confidence 00 00 0 000000 0 0
Q ss_pred CCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC-hHhhh
Q 000522 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLR 1297 (1445)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR 1297 (1445)
....++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+..|
T Consensus 254 ~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 327 (501)
T PRK11288 254 GEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIR 327 (501)
T ss_pred CCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHh
Confidence 1125889999742 4899999999999999999999999999999999999999999999999987543 34567
Q ss_pred cceEEEcCCCc---ccC-ccHHHhcCCCCC-C--------ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHH
Q 000522 1298 GRFAVVPQSPF---LFE-GSLRDNLDPFHM-N--------DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQR 1363 (1445)
Q Consensus 1298 ~~i~~VpQdp~---lF~-gTIReNLdp~~~-~--------sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQr 1363 (1445)
++++|+||+|. +|+ .|+.+|+..... . ...+ ++....+.++.+|++ ........+||||||
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRW-----EAENADRFIRSLNIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHH-----HHHHHHHHHHhcCcccCCccCccccCCHHHH
Confidence 89999999973 554 699999864311 0 1100 011123344445663 334555668999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||++||||++.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|++.+
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999997754 48899999999999865 79999999999999999877
Q ss_pred CC
Q 000522 1442 PN 1443 (1445)
Q Consensus 1442 ~~ 1443 (1445)
.+
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 53
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=660.33 Aligned_cols=456 Identities=20% Similarity=0.212 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 000522 964 AFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLL 1043 (1445)
Q Consensus 964 ~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 1043 (1445)
...+.+....+...+++++++.|..++++.++|+++|++++|++.+++.... +..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888999999999999999999999999999999999987643 333333333333333333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000522 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1123 (1445)
Q Consensus 1044 ~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1123 (1445)
+.++++++...++.++.+..+..++.....+....+.+.|.++|+++||+|+||+.|.+++.+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333333333444444445556677899999999999999999999999998876665444333322222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 000522 1124 WLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1203 (1445)
Q Consensus 1124 wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~ 1203 (1445)
+.......... ++.++.+...... .+..++|.+..++++...+..++..+...+.++..+.+|.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~-~v~~~~fg~~~~~-----~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 525 FNSFILNSIPV-LVTVVSFGVFTLL-----GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 22221111111 1111111111111 23467888888888888888899999999999999999999999999765
Q ss_pred ccccccCCCCCCCCCCCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-cEE
Q 000522 1204 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-GQI 1281 (1445)
Q Consensus 1204 ~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~-G~I 1281 (1445)
++..... ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|.+ |+|
T Consensus 599 e~~~~~~--~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 599 ERVLLPN--PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred ccccccC--Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 4321111 11 11224579999999999753 3579999999999999999999999999999999999999999 999
Q ss_pred EECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCC
Q 000522 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFS 1359 (1445)
Q Consensus 1282 ~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS 1359 (1445)
.+ |++|+||||+|++|+|||||||.++.++++++++++++.|+|.++++.+ |++|.+||+|.+||
T Consensus 676 ~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LS 742 (1622)
T PLN03130 676 VI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNIS 742 (1622)
T ss_pred EE-------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCC
Confidence 74 7799999999999999999999999889999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHH-HHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecC
Q 000522 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1360 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~I-q~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~ 1438 (1445)
|||||||+||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+|.|+
T Consensus 743 GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999866 567887778999999999999999999999999999999999
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
|+++
T Consensus 823 ~~eL 826 (1622)
T PLN03130 823 YEEL 826 (1622)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-62 Score=610.67 Aligned_cols=198 Identities=19% Similarity=0.287 Sum_probs=166.2
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| ++++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3699999999999999999999999999999999999999999999987 3579
Q ss_pred EEEcCCCc--ccC-ccHHHhcCCCC--CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1301 AVVPQSPF--LFE-GSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1301 ~~VpQdp~--lF~-gTIReNLdp~~--~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
+|+||++. +++ .|+++|+..+. ...++++.++|+..++. .........+||||||||++||||++++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------~~~~~~~~~~LSgGq~qrv~la~al~~~ 456 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS--------QDDIKKSVKVLSGGEKGRMLFGKLMMQK 456 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC--------hhHhcCcccccCHHHHHHHHHHHHHhcC
Confidence 99999984 443 59999986432 12233455555554431 1234455668999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEe-eecCCCC
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLP-HCGCAAA 1441 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vv-E~G~p~~ 1441 (1445)
|+||||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ +.|++.+
T Consensus 457 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 457 PNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEE 522 (530)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHH
Confidence 9999999999999999999999999876 4699999999999876 8999999999998 6777643
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=601.58 Aligned_cols=462 Identities=18% Similarity=0.231 Sum_probs=347.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhh
Q 000522 953 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1032 (1445)
Q Consensus 953 ~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~ 1032 (1445)
.++.++..+.....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++..++.+++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44556677777888999999999999999999999999999999999999999999987554 35556666667777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcH---HHHHHHHHHHHH
Q 000522 1033 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE---DYFMAKFKEHVV 1109 (1445)
Q Consensus 1033 ~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e---~~f~~~~~~~~d 1109 (1445)
++++.+|.++++++..+.+...+..+..+..+...+...+..+.+.+++.|.++|+++++ ++.+ +.+.+++.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 777777777665544444333333333333333333334566778899999999999995 5443 456777777666
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 1110 LYQRTSYSELTASLWLSLRLQLLAAFI-ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEK 1188 (1445)
Q Consensus 1110 ~~~~~~~~~~~~~~wl~~~l~~l~~~~-~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~ 1188 (1445)
...+..+...... .....+..++ ..+.++..+.+.. . ...+.+.++....+...+..++..+...+.++..
T Consensus 220 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 291 (547)
T PRK10522 220 EYRHHIIRADTFH----LSAVNWSNIMMLGAIGLVFYMANS--L--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLS 291 (547)
T ss_pred HHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--h--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444322111 1111111111 1111111111110 0 1112333333334444566788899999999999
Q ss_pred HHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHH
Q 000522 1189 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1268 (1445)
Q Consensus 1189 ~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~ 1268 (1445)
...+.+|+.++.+.++|+......+ -|..+.|+|+||+|+|++ .+++|+|+||+|+|||++||+|+||||||||++
T Consensus 292 ~~~a~~ri~~l~~~~~~~~~~~~~~---~~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 292 AQVAFNKLNKLALAPYKAEFPRPQA---FPDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHHHhccccccccccccc---cCcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999976554321111111 122357999999999974 357999999999999999999999999999999
Q ss_pred HHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCc
Q 000522 1269 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1348 (1445)
Q Consensus 1269 ~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLd 1348 (1445)
+|.|+|+|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ....+|++++++++++++.+.+.
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~----- 439 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE----- 439 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh-----
Confidence 9999999999999999999999999999999999999999999999999 23567788888888877655443
Q ss_pred hhhhc---CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcC
Q 000522 1349 TFVKE---SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMD 1423 (1445)
Q Consensus 1349 t~v~e---~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~D 1423 (1445)
.++ +|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||
T Consensus 440 --~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 440 --LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred --ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 222 378999999999999999999999999999999999999999999987654 4899999999999999999
Q ss_pred EEEEEeCCeEeeecC
Q 000522 1424 EILILDHGHLPHCGC 1438 (1445)
Q Consensus 1424 rI~Vl~~G~vvE~G~ 1438 (1445)
+|++|++|+++|...
T Consensus 518 ~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 518 RLLEMRNGQLSELTG 532 (547)
T ss_pred EEEEEECCEEEEecC
Confidence 999999999999843
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=611.54 Aligned_cols=434 Identities=22% Similarity=0.315 Sum_probs=327.1
Q ss_pred EccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------eE
Q 000522 609 QDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------------SI 674 (1445)
Q Consensus 609 ~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------------~i 674 (1445)
+|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 2 ~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 75 (491)
T PRK10982 2 SNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75 (491)
T ss_pred CceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 467777742 2359999999999999999999999999999999999999999999876 38
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCC------CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000522 675 AYVPQVPWILS-GTIRDNILFGKN------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 675 ~y~~Q~p~l~~-~ti~~nI~~g~~------~~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~ 743 (1445)
+|++|++.++. .|++||+.++.. .+.+ +.+++++.+++. ........+|||||||||+
T Consensus 76 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 76 SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred EEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHH
Confidence 99999998765 599999987631 1221 223333333332 1224456789999999999
Q ss_pred HHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHh
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 223 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI-IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM 223 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH
Confidence 99999999999999999999999999998876 33212357899999999998865 99999999999987665322100
Q ss_pred ccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhhhhHHHHH
Q 000522 823 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITL 902 (1445)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~ 902 (1445)
.+.
T Consensus 224 -----------------------------------------------------~~~------------------------ 226 (491)
T PRK10982 224 -----------------------------------------------------DKI------------------------ 226 (491)
T ss_pred -----------------------------------------------------HHH------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 903 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 982 (1445)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~l 982 (1445)
...+..
T Consensus 227 -------------------~~~~~~------------------------------------------------------- 232 (491)
T PRK10982 227 -------------------IAMMVG------------------------------------------------------- 232 (491)
T ss_pred -------------------HHHHhC-------------------------------------------------------
Confidence 000000
Q ss_pred hcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 983 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1062 (1445)
Q Consensus 983 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~ 1062 (1445)
T Consensus 233 -------------------------------------------------------------------------------- 232 (491)
T PRK10982 233 -------------------------------------------------------------------------------- 232 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000522 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1142 (1445)
Q Consensus 1063 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~ 1142 (1445)
+
T Consensus 233 -----------~-------------------------------------------------------------------- 233 (491)
T PRK10982 233 -----------R-------------------------------------------------------------------- 233 (491)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCcc
Q 000522 1143 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGL 1222 (1445)
Q Consensus 1143 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~ 1222 (1445)
. .. + ..+.+. .+ +.+..
T Consensus 234 --------~--~~---------------------------------------~-----~~~~~~-----~~----~~~~~ 250 (491)
T PRK10982 234 --------S--LT---------------------------------------Q-----RFPDKE-----NK----PGEVI 250 (491)
T ss_pred --------C--cc---------------------------------------c-----cccccc-----CC----CCCcE
Confidence 0 00 0 000000 00 11125
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH-hhhcceE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR-DLRGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~-~lR~~i~ 1301 (1445)
|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++
T Consensus 251 i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 251 LEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 8999999975 2599999999999999999999999999999999999999999999999999876654 4577899
Q ss_pred EEcCCCc---ccC-ccHHHh-----cCCCCC----CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHH
Q 000522 1302 VVPQSPF---LFE-GSLRDN-----LDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1302 ~VpQdp~---lF~-gTIReN-----Ldp~~~----~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~ 1367 (1445)
|+||++. +|+ .|+++| +..... .+..+.. ....+.++.+|+. ........+||||||||++
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 401 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI 401 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence 9999963 565 477766 321111 1111111 1123344444553 2345556689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..+++++.
T Consensus 402 la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999997653 58999999999998875 799999999999998887543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=607.70 Aligned_cols=444 Identities=19% Similarity=0.240 Sum_probs=330.4
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 3789999999852 1259999999999999999999999999999999999999999998764
Q ss_pred -eEEEEcCCCCC---------CCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 -SIAYVPQVPWI---------LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 -~i~y~~Q~p~l---------~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.++|++|+|.+ ++.|++||+.++.. ++++.+++++..++.... .....+||||||||+
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv 144 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKT 144 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHH
Confidence 27999998753 14599999876532 345566777777765332 334568999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
+||||+..+|++++|||||++||+...+.+.+.+ .....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELL-ASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999888863 3212347899999999998876 9999999999999877655432
Q ss_pred hccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhhhhHHHH
Q 000522 822 VSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFIT 901 (1445)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~ 901 (1445)
... .. .+..+.
T Consensus 224 ~~~------------------------------------------------~~---~~~~~~------------------ 234 (490)
T PRK10938 224 QQA------------------------------------------------LV---AQLAHS------------------ 234 (490)
T ss_pred cch------------------------------------------------hh---hhhhhh------------------
Confidence 100 00 000000
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 902 LVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTK 981 (1445)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ 981 (1445)
.
T Consensus 235 -------------------------~------------------------------------------------------ 235 (490)
T PRK10938 235 -------------------------E------------------------------------------------------ 235 (490)
T ss_pred -------------------------h------------------------------------------------------
Confidence 0
Q ss_pred HhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 982 IVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1061 (1445)
Q Consensus 982 ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~ 1061 (1445)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000522 1062 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIA 1141 (1445)
Q Consensus 1062 ~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~ 1141 (1445)
.+. . .
T Consensus 236 ---~~~---~-~-------------------------------------------------------------------- 240 (490)
T PRK10938 236 ---QLE---G-V-------------------------------------------------------------------- 240 (490)
T ss_pred ---ccC---c-c--------------------------------------------------------------------
Confidence 000 0 0
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCc
Q 000522 1142 TMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQG 1221 (1445)
Q Consensus 1142 ~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g 1221 (1445)
..... .+.... ...+ +...
T Consensus 241 ---------~~~~~------------------------------------------------~~~~~~-~~~~---~~~~ 259 (490)
T PRK10938 241 ---------QLPEP------------------------------------------------DEPSAR-HALP---ANEP 259 (490)
T ss_pred ---------ccCcc------------------------------------------------cccccc-cccC---CCCc
Confidence 00000 000000 0000 0122
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCeeCCC-CChHhhhcc
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIIN-TPVRDLRGR 1299 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-~~G~I~IDG~di~~-i~~~~lR~~ 1299 (1445)
.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.++ ++|+|.+||.++.. .+....|++
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999964 3599999999999999999999999999999999998876 69999999987632 233456889
Q ss_pred eEEEcCCCcccC---ccHHHhcCCC--C---CC--ChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000522 1300 FAVVPQSPFLFE---GSLRDNLDPF--H---MN--DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1300 i~~VpQdp~lF~---gTIReNLdp~--~---~~--sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~L 1368 (1445)
++++||++.++. .|+++++.+. . .. .+.+.. ....+.++.+|++. ........||||||||++|
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQ-----KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALI 412 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHH-----HHHHHHHHHcCCchhhccCchhhCCHHHHHHHHH
Confidence 999999986542 3677776421 1 01 011100 01223333446654 4455556899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CC-cEEEEeccChhHHhh--cCEEEEEeCCeEeeecC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KG-MTVITIAHRISTVLN--MDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~-~TvI~IaHrl~ti~~--~DrI~Vl~~G~vvE~G~ 1438 (1445)
|||++++|+||||||||++||+++.+.+.+.|++.. ++ .|||+|||+++.+.. ||+|++|++|++++.-+
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 999999999999999999999999999999998864 33 479999999999975 69999999999987643
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=598.53 Aligned_cols=195 Identities=23% Similarity=0.273 Sum_probs=160.4
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .++
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 46999999999964 3699999999999999999999999999999999999999999999954 2 169
Q ss_pred EEEcCCC-cccCc-cHHHhcCCCCCC-----ChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHh
Q 000522 1301 AVVPQSP-FLFEG-SLRDNLDPFHMN-----DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1301 ~~VpQdp-~lF~g-TIReNLdp~~~~-----sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
+|+||++ .++.. |+++|+...... .+.+..+ .++.+|+.. ........||||||||++||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRA---------YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHH---------HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999997 56654 999998643211 1122222 333445543 23455568999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeC-CeEee-ecCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLPH-CGCA 1439 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-G~vvE-~G~p 1439 (1445)
+.+|++|||||||++||+.+.+.+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++.+ .|++
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCH
Confidence 9999999999999999999999999999875 4 499999999998876 899999996 88875 4443
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-60 Score=595.51 Aligned_cols=469 Identities=23% Similarity=0.289 Sum_probs=326.0
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--eEEEEcCCCC
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 682 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~p~ 682 (1445)
.++++|++++|..+ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .||||+|+|+
T Consensus 4 ~i~~~nls~~~~~~-----~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-----KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCC-----CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 57899999998521 2359999999999999999999999999999999999999999999874 6999999999
Q ss_pred CCC-ccHHHHHhcCCCC------------------Ch---------hhHHHHHHHhcchH---H----HhhccCCCcccc
Q 000522 683 ILS-GTIRDNILFGKNY------------------DP---------QSYSETLKACTLDV---D----ISLMVGGDMAYI 727 (1445)
Q Consensus 683 l~~-~ti~~nI~~g~~~------------------~~---------~~~~~v~~~~~l~~---d----~~~~~~gd~t~v 727 (1445)
+++ .|++|||.++... ++ +++.++++.++... . ++.+ |.. ..
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~ 155 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PW 155 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cc
Confidence 875 5999999875210 01 12344445554321 1 1111 111 12
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEE
Q 000522 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVM 806 (1445)
Q Consensus 728 g~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l 806 (1445)
.....+|||||||||+||||++.+|+++||||||++||+.+.+++.+. +.. . +.|+|+|||+++.+.. ||++++|
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L~~-~--~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-LQE-Y--PGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-HHh-C--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 456779999999999999999999999999999999999999988876 332 2 3599999999999876 9999999
Q ss_pred eCCEEE-EecCHhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccc
Q 000522 807 DKGQVK-WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVE 885 (1445)
Q Consensus 807 ~~G~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 885 (1445)
++|+++ ..|+++++..... .. .+ ....+.+..+.
T Consensus 232 ~~g~i~~~~g~~~~~~~~~~-----------------~~---------~~---------------~~~~~~~~~~~---- 266 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWLEQKE-----------------KR---------LE---------------QEEKEESARQK---- 266 (552)
T ss_pred ECCEEEEecCCHHHHHHHHH-----------------HH---------HH---------------HHHHHHHHHHH----
Confidence 999975 6788877643100 00 00 00000000000
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 886 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1445)
Q Consensus 886 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~ 965 (1445)
.+.. ...|....
T Consensus 267 ------~~~~--------------------------~~~~~~~~------------------------------------ 278 (552)
T TIGR03719 267 ------ALKR--------------------------ELEWVRSS------------------------------------ 278 (552)
T ss_pred ------HHHH--------------------------HHHHHHhh------------------------------------
Confidence 0000 00000000
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 000522 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1445)
Q Consensus 966 ~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1445)
+
T Consensus 279 --------------------~----------------------------------------------------------- 279 (552)
T TIGR03719 279 --------------------P----------------------------------------------------------- 279 (552)
T ss_pred --------------------h-----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000522 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1445)
Q Consensus 1046 ~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1125 (1445)
.. + + + +....
T Consensus 280 ---------------~~-~---~----~-----------------------------~~~~~------------------ 289 (552)
T TIGR03719 280 ---------------KA-R---Q----A-----------------------------KSKAR------------------ 289 (552)
T ss_pred ---------------hh-H---H----H-----------------------------HHHHH------------------
Confidence 00 0 0 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCc
Q 000522 1126 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQ 1204 (1445)
Q Consensus 1126 ~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~-~~~~~ 1204 (1445)
....++..+. ...++
T Consensus 290 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 305 (552)
T TIGR03719 290 ----------------------------------------------------------------LARYEELLSQEFQKRN 305 (552)
T ss_pred ----------------------------------------------------------------HHHHHhhhhhcccccC
Confidence 0000000000 00000
Q ss_pred cccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Q 000522 1205 EELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1445)
Q Consensus 1205 e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1284 (1445)
+... ...+...-+.+..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++
T Consensus 306 ~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~ 382 (552)
T TIGR03719 306 ETAE-IYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG 382 (552)
T ss_pred CCce-eecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC
Confidence 0000 0000000011236999999999964 369999999999999999999999999999999999999999999995
Q ss_pred CeeCCCCChHhhhcceEEEcCCCc-ccC-ccHHHhcCCCCC---CC--hHHHHHHHHHccHHHHHHhCCCch-hhhcCCC
Q 000522 1285 GLNIINTPVRDLRGRFAVVPQSPF-LFE-GSLRDNLDPFHM---ND--DLKIWSVLEKCHVKEEVEAVGLET-FVKESGI 1356 (1445)
Q Consensus 1285 G~di~~i~~~~lR~~i~~VpQdp~-lF~-gTIReNLdp~~~---~s--d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~ 1356 (1445)
+ + .+++|+||++. +++ -|+++|+..... .. +.+.. +.++.+|++. .......
T Consensus 383 ~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~~~~~~ 442 (552)
T TIGR03719 383 E-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGRFNFKGSDQQKKVG 442 (552)
T ss_pred C-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHhCCCChhHhcCchh
Confidence 4 2 16999999973 665 499999965321 11 11222 2344446643 2355556
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeC-CeEe
Q 000522 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLP 1434 (1445)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-G~vv 1434 (1445)
.||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++. . .|||+|||+++.+.. ||+|++|++ |++.
T Consensus 443 ~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 443 QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 89999999999999999999999999999999999999999999976 3 499999999999876 899999997 6887
Q ss_pred ee
Q 000522 1435 HC 1436 (1445)
Q Consensus 1435 E~ 1436 (1445)
++
T Consensus 521 ~~ 522 (552)
T TIGR03719 521 WF 522 (552)
T ss_pred Ee
Confidence 54
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=635.44 Aligned_cols=545 Identities=19% Similarity=0.179 Sum_probs=398.5
Q ss_pred hHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 268 SLVRAICCAYGYPYIC-LGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 345 (1445)
Q Consensus 268 ~l~~~l~~~~~~~~~~-~~l~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r 345 (1445)
+.++..+++.++.... .+++.++..++....|+.++...+.-. +.......+. .+.+++..++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR-LSVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443322 233444555666777888876654321 1111111221 112223333344443334455566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 000522 346 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSG 424 (1445)
Q Consensus 346 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~ 424 (1445)
.+.+.-..+...+|++.++.+...+++.+.|+++|.++.|++.+..... .+..+...++.++.++.++.....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888899999999999999999999999999999999998654 445555666666555544443333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1445)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1445)
++++++...+..+..+..+..++...+.+....+..+|.++|+++||.||+|+.|.++..+..+...+..........+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333334444444445555556667777899999999999999999999998887776554444433322223332
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhh
Q 000522 505 VFFWATTPTLFSLFTFGLFAL-MGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1445)
Q Consensus 505 ~~~~~~~~~~~~~~~f~~~~~-~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 583 (1445)
.........+ .++..+.+.+ ..+.++++.+..++.+...+..|+..+...+..+..+.+|.+||.+|++.++..+...
T Consensus 1192 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1192 AVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 2221111111 1222233333 3467999999999999999999999999999999999999999999997654321100
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC
Q 000522 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~ 663 (1445)
. ...+.. .-+.++.|+++|++|+|+++. +++|+|+||+|++||.++|||++|||||||+++|+|.++|
T Consensus 1271 ~-~~~~~~-------~wp~~g~I~f~nVsf~Y~~~~----~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1271 Q-ETAPPS-------GWPPRGRVEFRNYCLRYREDL----DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred c-CCCCCC-------CCCCCCcEEEEEEEEEeCCCC----cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 0 000000 002346799999999997532 2469999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000522 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1445)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~ 730 (1445)
++|+|.++| +|+||||+|.+|+|||||||....+++++...++++.|++++.+..+|+|.+|.|||+
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 999999997 5999999999999999999983336888889999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCE
Q 000522 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1445)
Q Consensus 731 g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~ 810 (1445)
|.+||||||||++||||++++|+|+|||||||+||+++++.|.+. +.. ..+++|+|+|+||++.+..+|+|++|++|+
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~-~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRT-QFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999888776 443 567899999999999999999999999999
Q ss_pred EEEecCHhHHHhccccCc
Q 000522 811 VKWIGSSADLAVSLYSGF 828 (1445)
Q Consensus 811 i~~~g~~~~~~~~~~~~~ 828 (1445)
|++.|+|+|++++.+.+.
T Consensus 1497 IvE~G~~~eLl~~~~~f~ 1514 (1522)
T TIGR00957 1497 VAEFGAPSNLLQQRGIFY 1514 (1522)
T ss_pred EEEECCHHHHHhCCCHHH
Confidence 999999999987654443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=535.38 Aligned_cols=512 Identities=24% Similarity=0.288 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000522 290 VNDSIGFAGPLLLNKLIKFLQQ--GSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYV 365 (1445)
Q Consensus 290 ~~~~~~~~~P~ll~~li~~~~~--~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l 365 (1445)
..-.+...+|++++.+++.+.. ..+ .......+.+++++.++.+++.-........+..++-......+|++.+.+
T Consensus 41 ~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~l 120 (591)
T KOG0057|consen 41 GAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSL 120 (591)
T ss_pred hhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3356677899999999999864 222 223345566777777888888877777788888888888899999999999
Q ss_pred CccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000522 366 RLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITIL-LIPVNKWIANLIA 443 (1445)
Q Consensus 366 ~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~~~~-~~~~~~~~~~~~~ 443 (1445)
+.+...+..+|++.+.|.--...|..... .+..+....+++.++...+++..|.+..+...+.+. .......++.+-.
T Consensus 121 d~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn 200 (591)
T KOG0057|consen 121 DLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN 200 (591)
T ss_pred hHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence 99998889999999999888888887654 456777788899999999999999876554433333 3334445567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 444 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTR-SSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGL 522 (1445)
Q Consensus 444 ~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R-~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 522 (1445)
+.+++++++.++..+..-+.|.|-.+||.|+-|+...++....- +.|-...+-.. ..++.++.... .+....++..
T Consensus 201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~-sl~~lnfgQ~~--iFsv~~~~im 277 (591)
T KOG0057|consen 201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSS-SLAFLNFGQKA--IFSVALTFIM 277 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHh-HHHHHHHHHHH--HHHHHHHHHH
Confidence 88999999999999999999999999999999999988887653 23322222222 22222222111 1112223333
Q ss_pred HH----HhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccCCCcc
Q 000522 523 FA----LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSN 598 (1445)
Q Consensus 523 ~~----~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 598 (1445)
|+ +.++.+|.+...-..+++..|..|+..|...+..+.++..-++-+....+.++ + . +....|.
T Consensus 278 ~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~--~-i-~~~~~~i-------- 345 (591)
T KOG0057|consen 278 VLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE--D-I-QEAALPI-------- 345 (591)
T ss_pred HHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh--h-h-hhccCCc--------
Confidence 32 45568999999999999999999999999999988888877765543332111 1 1 1100111
Q ss_pred CCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------
Q 000522 599 FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------ 672 (1445)
Q Consensus 599 ~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------ 672 (1445)
...++.|+|+|++|+|.+ .+++|+++||+|++||.++|+|+|||||||++++|+++++ ++|+|.++|
T Consensus 346 -~~~~~~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 346 -ELFGGSIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEV 418 (591)
T ss_pred -ccCCCcEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhh
Confidence 134456999999999973 2446999999999999999999999999999999999999 999999998
Q ss_pred -------eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHH
Q 000522 673 -------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1445)
Q Consensus 673 -------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~l 744 (1445)
.||||||+..|||+||.+||.+|++. .+++..++++..++++-+..+|+|++|.|||+|..|||||||||+|
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsl 498 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSL 498 (591)
T ss_pred ChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHH
Confidence 49999999999999999999999874 5667778888889999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhcc
Q 000522 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 824 (1445)
Q Consensus 745 ARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~~ 824 (1445)
|||+.+||+|+++|||||+||.+|++.+++. +.+ ...+||+|+|.||++.++.+|+|+++++|++.+.|+++|++...
T Consensus 499 aRa~lKda~Il~~DEaTS~LD~~TE~~i~~~-i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s 576 (591)
T KOG0057|consen 499 ARAFLKDAPILLLDEATSALDSETEREILDM-IMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPS 576 (591)
T ss_pred HHHHhcCCCeEEecCcccccchhhHHHHHHH-HHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhh
Confidence 9999999999999999999999999999998 444 67899999999999999999999999999999999999998743
Q ss_pred c
Q 000522 825 Y 825 (1445)
Q Consensus 825 ~ 825 (1445)
+
T Consensus 577 ~ 577 (591)
T KOG0057|consen 577 E 577 (591)
T ss_pred h
Confidence 3
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=527.96 Aligned_cols=448 Identities=25% Similarity=0.357 Sum_probs=337.5
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------ 672 (1445)
..+.++|.+..+.... ....++++|||++++||.+++||.||||||-..++++|+++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 5 PLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred cceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 4567888888876543 234579999999999999999999999999999999999865 367888776
Q ss_pred -----------eEEEEcCCCCC-CCc--cHHHHH----hcCCCCC----hhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000522 673 -----------SIAYVPQVPWI-LSG--TIRDNI----LFGKNYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1445)
Q Consensus 673 -----------~i~y~~Q~p~l-~~~--ti~~nI----~~g~~~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~ 730 (1445)
+|++++|+|-- .|- ||-.-| ...+..+ +++..+.++..++.+- ...+...
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~y 154 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAY 154 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhC
Confidence 69999999952 232 665544 3433333 2344555566665431 1223455
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCC
Q 000522 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKG 809 (1445)
Q Consensus 731 g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G 809 (1445)
...|||||||||-||.||..+||+||-||||.|||..+..+|++.+..-....|..+++|||++..+.. ||+|+||.+|
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 679999999999999999999999999999999999999999986322223347799999999999987 9999999999
Q ss_pred EEEEecCHhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhH
Q 000522 810 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 889 (1445)
Q Consensus 810 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 889 (1445)
+++|.|+.+++...... .
T Consensus 235 ~ivE~~~t~~lF~~PqH-------------------------------------------------------------p- 252 (534)
T COG4172 235 EIVETGTTETLFAAPQH-------------------------------------------------------------P- 252 (534)
T ss_pred EEeecCcHHHHhhCCCC-------------------------------------------------------------h-
Confidence 99998876554321000 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 890 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969 (1445)
Q Consensus 890 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~ 969 (1445)
|-+
T Consensus 253 --YTr--------------------------------------------------------------------------- 255 (534)
T COG4172 253 --YTR--------------------------------------------------------------------------- 255 (534)
T ss_pred --HHH---------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 000522 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1049 (1445)
Q Consensus 970 ~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~ 1049 (1445)
T Consensus 256 -------------------------------------------------------------------------------- 255 (534)
T COG4172 256 -------------------------------------------------------------------------------- 255 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000522 1050 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1129 (1445)
Q Consensus 1050 ~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1129 (1445)
++
T Consensus 256 ---------------~L--------------------------------------------------------------- 257 (534)
T COG4172 256 ---------------KL--------------------------------------------------------------- 257 (534)
T ss_pred ---------------HH---------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Q 000522 1130 QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1209 (1445)
Q Consensus 1130 ~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~ 1209 (1445)
++ .|+. +
T Consensus 258 ----------------------------------------------------------------------l~--aeP~-g 264 (534)
T COG4172 258 ----------------------------------------------------------------------LA--AEPS-G 264 (534)
T ss_pred ----------------------------------------------------------------------Hh--cCCC-C
Confidence 00 0000 0
Q ss_pred CCCCCCCCCCCccEEEEEEEEEeCCC---------CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Q 000522 1210 YQSLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1445)
Q Consensus 1210 ~~~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1280 (1445)
..+|..-...-.++.+||.+.|+-. .-.+.+||||+.++||.+||||+||||||||-.+|+|+++++ |+
T Consensus 265 -~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~ 342 (534)
T COG4172 265 -DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE 342 (534)
T ss_pred -CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce
Confidence 0011111122357778888877421 124799999999999999999999999999999999999976 99
Q ss_pred EEECCeeCCCCChHh---hhcceEEEcCCCc--ccC-ccHHHhcC----CCC-CC----ChHHHHHHHHHccHHHHHHhC
Q 000522 1281 ILVDGLNIINTPVRD---LRGRFAVVPQSPF--LFE-GSLRDNLD----PFH-MN----DDLKIWSVLEKCHVKEEVEAV 1345 (1445)
Q Consensus 1281 I~IDG~di~~i~~~~---lR~~i~~VpQdp~--lF~-gTIReNLd----p~~-~~----sd~ei~~aL~~~~l~~~i~~l 1345 (1445)
|.++|.||...+.++ +|+++-+|.|||+ |=+ .||-+-|. -.. .. .|+.+.+||+.+||+...
T Consensus 343 I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~--- 419 (534)
T COG4172 343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT--- 419 (534)
T ss_pred EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH---
Confidence 999999999888765 5799999999997 222 25544442 111 11 245677777777665432
Q ss_pred CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-c
Q 000522 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-M 1422 (1445)
Q Consensus 1346 gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~ 1422 (1445)
...-...+||||||||+||||++-+|++++||||||+||......|.+.+++.- .+-+-++|+|+|..++. |
T Consensus 420 -----r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~ 494 (534)
T COG4172 420 -----RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALC 494 (534)
T ss_pred -----hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhh
Confidence 233355799999999999999999999999999999999999999999998763 47899999999999985 8
Q ss_pred CEEEEEeCCeEeeecCCCC
Q 000522 1423 DEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1423 DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|+|+||.+|+|||+|+-++
T Consensus 495 ~~viVm~~GkiVE~G~~~~ 513 (534)
T COG4172 495 HRVIVMRDGKIVEQGPTEA 513 (534)
T ss_pred ceEEEEeCCEEeeeCCHHH
Confidence 9999999999999997543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=589.87 Aligned_cols=195 Identities=23% Similarity=0.339 Sum_probs=159.3
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 36999999999964 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcCCC--cccC-ccHHHhcCCC-CCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1301 AVVPQSP--FLFE-GSLRDNLDPF-HMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1301 ~~VpQdp--~lF~-gTIReNLdp~-~~~sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
+|+||++ .+.. .|+.+|+... ....++++.+.|+.. |+.. ........||||||||++||||++++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---------~l~~~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF---------GFQGDKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc---------CCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999985 3443 3788876321 111223344444443 4532 34445567999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEe-eecCC
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLP-HCGCA 1439 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vv-E~G~p 1439 (1445)
|++|||||||++||..+...+.+.|++. . .|||+|||+++.+.. ||+|++|++|+++ ..|++
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCH
Confidence 9999999999999999999999999876 4 599999999999876 8999999999997 44554
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=616.19 Aligned_cols=212 Identities=20% Similarity=0.277 Sum_probs=174.9
Q ss_pred cEEEEEEEEEeCC-----------CCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCeeC
Q 000522 1222 LIEFQNVTMRYKP-----------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNI 1288 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~-----------~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di 1288 (1445)
.+.|+||++.++. +...+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998742 123699999999999999999999999999999999999873 689999999886
Q ss_pred CCCChHhhhcceEEEcCCCcccCc-cHHHhcCCCC------CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCC-C
Q 000522 1289 INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH------MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESG-I 1356 (1445)
Q Consensus 1289 ~~i~~~~lR~~i~~VpQdp~lF~g-TIReNLdp~~------~~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G-~ 1356 (1445)
. ....|+.++||+|++.+++. |+||||.+.. ..+++ .+.++++..+|.+. .|+.+|..+ .
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-----~~~~vg~~~~~ 1018 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-----KDAIVGLPGVT 1018 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-----hCCccCCCCCC
Confidence 4 34567889999999988765 9999996421 12222 24556666665543 355665433 4
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhH--HhhcCEEEEEeC-Ce
Q 000522 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILDH-GH 1432 (1445)
Q Consensus 1357 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~t--i~~~DrI~Vl~~-G~ 1432 (1445)
.||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. ...||++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 699999999999999999999999999999999999999999998864 48999999999984 456899999996 89
Q ss_pred EeeecCCCC
Q 000522 1433 LPHCGCAAA 1441 (1445)
Q Consensus 1433 vvE~G~p~~ 1441 (1445)
++++|++.+
T Consensus 1099 ~v~~G~~~~ 1107 (1470)
T PLN03140 1099 VIYSGPLGR 1107 (1470)
T ss_pred EEEECCccc
Confidence 999998753
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=584.44 Aligned_cols=535 Identities=22% Similarity=0.255 Sum_probs=390.7
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 887 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSS-QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1445)
Q Consensus 887 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~ 965 (1445)
++.+..++..+|.++...++..+.... ....+..+....+..... ........|....++..++.+++.-...+....
T Consensus 190 sl~~al~~~f~~~~~~~~~~~~~~~~~-~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~ 268 (1381)
T KOG0054|consen 190 SLLRALLRTFGRTFLLSGIFLFLRDLA-GFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFR 268 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 445555555555554444333333333 555666666655543222 122223444455555566666665555566677
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 000522 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1445)
Q Consensus 966 ~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1045 (1445)
.+.|.-..+-..++++.++..-.--..++.|+|+|-++.|.+.+++..+.....+...+-.+++...+.-...+ -+++.
T Consensus 269 ~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~-sa~~G 347 (1381)
T KOG0054|consen 269 VGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGP-SALAG 347 (1381)
T ss_pred hhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHH
Confidence 88888888888999999999988888889999999999999999998877666555544333332222111111 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000522 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1445)
Q Consensus 1046 ~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1125 (1445)
+.+++++.-++.+..+..+..++.....+..-....+|.++|+++||.|+||+.|.++..+.-+.-.+...+....+...
T Consensus 348 ~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~ 427 (1381)
T KOG0054|consen 348 VAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALN 427 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333334333333344444444444445567899999999999999999999998776554433333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 000522 1126 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1205 (1445)
Q Consensus 1126 ~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e 1205 (1445)
..... ...+++.++++.+... ...+..++..+..++++.-.+..++..+......+-++.+|++|+.+|+..++.
T Consensus 428 ~~~~~-~~p~lv~~~tF~~~v~----~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~ 502 (1381)
T KOG0054|consen 428 SFLNF-FSPVLVSVVTFVVFVL----LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL 502 (1381)
T ss_pred HHHHH-HHHHHHHHHHHHHHhh----ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 22111 1122222222222210 112345666777788888888888888888888888999999999999976543
Q ss_pred ccccCCCCCCCCCCCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Q 000522 1206 ELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1445)
Q Consensus 1206 ~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1284 (1445)
+...... .+.-+.+-.|+++|.+|++.++ .++.|+||||+|++||.+||||++|||||||+++|+|-++..+|++.++
T Consensus 503 ~~~~~~~-~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~ 581 (1381)
T KOG0054|consen 503 DPDSVER-SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN 581 (1381)
T ss_pred Ccccccc-CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc
Confidence 3211111 1222345579999999999864 4459999999999999999999999999999999999999999999998
Q ss_pred CeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhH
Q 000522 1285 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1362 (1445)
Q Consensus 1285 G~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQ 1362 (1445)
|. ++||||.|++|+|||||||.++.+++++...++++.|+|...++.+ |-.|+|||+|.||||||
T Consensus 582 gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 582 GS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred Ce-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 84 9999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHH-HHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASI-LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~-Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||+||||++++++|.+||+|-|+||+++.+. +.+.|+...++||+|.|||.++.+.+||+|+||++|+|+|.|+++|
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHH
Confidence 999999999999999999999999999999775 5678888889999999999999999999999999999999999987
Q ss_pred C
Q 000522 1442 P 1442 (1445)
Q Consensus 1442 ~ 1442 (1445)
+
T Consensus 729 l 729 (1381)
T KOG0054|consen 729 L 729 (1381)
T ss_pred H
Confidence 6
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=518.01 Aligned_cols=539 Identities=19% Similarity=0.235 Sum_probs=390.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKL 346 (1445)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~ 346 (1445)
.++...+ .++.++.++++.++..+....-=++-..+|..-.-... ...-++-+++.=+..++.++..+.-.......
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444444 66666666665554443333222222223321111111 11223334444455677777766666667788
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHhhHhHHHHHHH
Q 000522 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW-SLP-FQIGVALYLLYTQVKFAFVSG 424 (1445)
Q Consensus 347 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~-~~p-~~i~i~~~lL~~~lg~a~l~~ 424 (1445)
..++-+.+.-.+|+|....+......+..|++.|.+..|++.+++...-+..-| .+. +.+++.+.+-+..++.+.+.+
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 889999999999999999998888888999999999999999998764433333 222 233333444466777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 425 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 504 (1445)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 504 (1445)
+...+..+.+...+.+.-++..++..+.+..--+.+.+.+.|....+++|.++.+.+.+++.-..=.+..+|...+..+.
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~ 245 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLS 245 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666666666677777777777788999999999999999999998877664333333333333333333
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhCCCCC-HhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q 000522 505 VFFWATTPTLF---SLFTFGLFALMGHQLD-AAMVFTCLALFNSLISPLNS-FPWVINGLIDAFISIRRLTRFLGCSEYK 579 (1445)
Q Consensus 505 ~~~~~~~~~~~---~~~~f~~~~~~~~~Lt-~~~~ft~l~l~~~l~~pl~~-l~~~i~~~~~a~~s~~Ri~~fL~~~e~~ 579 (1445)
.++......+. .++|++.-. -.+..+ +..+...+..|..+- ++.. .|.++..+.+...|.+|+.+.++.++..
T Consensus 246 ~a~~~l~~g~~v~~~l~w~a~~~-~~G~~~~~~aa~~ll~~f~~~e-af~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 246 DAILLLIAGLLVIGLLLWMAAQV-GAGALAQPGAALALLVIFAALE-AFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-cCCCcchhHHHHHHHHHHHHHH-HHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 33322221111 122222211 122344 233323333233332 2222 2367788899999999999988765432
Q ss_pred hhhhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000522 580 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1445)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g 659 (1445)
... . ... ...+..++++|++|+|+..+ .++|+|+||++++||.++|+|++|||||||++.+.|
T Consensus 324 ~~~-~-~~~-----------~~~~~~l~~~~vsF~y~~~~----~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 324 TFP-D-EQT-----------ATTGQALELRNVSFTYPGQQ----TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred CCC-c-ccc-----------CCccceeeeccceeecCCCc----cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 211 0 000 11223799999999998542 346999999999999999999999999999999999
Q ss_pred CccCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcc
Q 000522 660 EMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMA 725 (1445)
Q Consensus 660 ~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~gd~t 725 (1445)
.++|++|+|..+| .+++++|.+.+|++|+|||+.++++. ++|...++++..+|++-++..|+|.+|
T Consensus 387 ~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t 466 (573)
T COG4987 387 AWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNT 466 (573)
T ss_pred ccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhc
Confidence 9999999999987 58999999999999999999999864 678889999999999999999999999
Q ss_pred cccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEE
Q 000522 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805 (1445)
Q Consensus 726 ~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~ 805 (1445)
.+||+|..||||||||++|||++.+|+++++|||||.+||+.|++++++. +.. ..+|||+|+||||+..++.+|+|++
T Consensus 467 ~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~-~~~~kTll~vTHrL~~le~~drIiv 544 (573)
T COG4987 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFE-HAEGKTLLMVTHRLRGLERMDRIIV 544 (573)
T ss_pred hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHH-HhcCCeEEEEecccccHhhcCEEEE
Confidence 99999999999999999999999999999999999999999999999997 333 5679999999999999999999999
Q ss_pred EeCCEEEEecCHhHHHhccccCcc
Q 000522 806 MDKGQVKWIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 806 l~~G~i~~~g~~~~~~~~~~~~~~ 829 (1445)
|++|+++++|+|.+++.+++.+.+
T Consensus 545 l~~Gkiie~G~~~~Ll~~~g~~~~ 568 (573)
T COG4987 545 LDNGKIIEEGTHAELLANNGRYKR 568 (573)
T ss_pred EECCeeeecCCHHhhhccccHHHH
Confidence 999999999999999886655443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=610.42 Aligned_cols=474 Identities=18% Similarity=0.201 Sum_probs=356.5
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 000522 349 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1445)
Q Consensus 349 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~ 427 (1445)
+....+...+|++.++.+...+.+.+.|+++|.++.|++.+...+. .+..+....+.++.++.++.....+.+++.+++
T Consensus 1028 ~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677889999999999999999999999999999999998654 345555555555554444433323333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 507 (1445)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 507 (1445)
+++...+..++.+..+..++......+.-.+.++|.++|+++||.|+.|+.+.++..+.-+...+...+......+....
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334444555556666666777778899999999999999999999988887665444443333222222222221
Q ss_pred HHHH--HHHHHHHHHHHH--HHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch--h
Q 000522 508 WATT--PTLFSLFTFGLF--ALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH--E 581 (1445)
Q Consensus 508 ~~~~--~~~~~~~~f~~~--~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~--~ 581 (1445)
.... ...+.++.++++ ....+.++++.+..++.+...+..|+..+...+..+..++.|++||.+|++..+.++ .
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~ 1267 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 1111 111112222222 222345789988888888899999999999999999999999999999996422111 0
Q ss_pred hhh-------hcCCCCc------ccCC--C--ccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEc
Q 000522 582 LEQ-------AANSPSY------ISNG--L--SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIG 644 (1445)
Q Consensus 582 ~~~-------~~~~~~~------~~~~--~--~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG 644 (1445)
... ....+.+ .... . .+.....+.|+|+|++|+|+++. +++|+|+||+|++||.++|||
T Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~----~~vL~~vsf~I~~GekVaIVG 1343 (1560)
T PTZ00243 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGL----PLVLRGVSFRIAPREKVGIVG 1343 (1560)
T ss_pred ccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCC----CceeecceEEECCCCEEEEEC
Confidence 000 0000000 0000 0 00011245799999999996431 346999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCccCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhc
Q 000522 645 EVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711 (1445)
Q Consensus 645 ~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~ 711 (1445)
++|||||||+++|+|.++|++|+|.++| .|+||||+|.||+|||||||..+.+++++...++++.|+
T Consensus 1344 rTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~ 1423 (1560)
T PTZ00243 1344 RTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVG 1423 (1560)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCC
Confidence 9999999999999999999999999987 599999999999999999998777888899999999999
Q ss_pred chHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC-CCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEE
Q 000522 712 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG-SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790 (1445)
Q Consensus 712 l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~-~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilv 790 (1445)
+++.+..+|+|.+|.|||+|.+||||||||++||||++++ |+|+|||||||+||+++++.|.+. +.. ..+++|+|+|
T Consensus 1424 l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~-~~~~~TvI~I 1501 (1560)
T PTZ00243 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMS-AFSAYTVITI 1501 (1560)
T ss_pred ChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HCCCCEEEEE
Confidence 9999999999999999999999999999999999999996 899999999999999999988776 443 4578999999
Q ss_pred ccCchhhhhCCEEEEEeCCEEEEecCHhHHHhc-cccCc
Q 000522 791 THNVQAISAADMVVVMDKGQVKWIGSSADLAVS-LYSGF 828 (1445)
Q Consensus 791 th~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 828 (1445)
+||++.+..||+|++|++|+|++.|+++|++++ ++.+.
T Consensus 1502 AHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~ 1540 (1560)
T PTZ00243 1502 AHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFH 1540 (1560)
T ss_pred eccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHH
Confidence 999999999999999999999999999999864 44443
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=577.94 Aligned_cols=191 Identities=24% Similarity=0.343 Sum_probs=158.6
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5899999999964 36999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEcCCC-cccCc-cHHHhcCCCCC-C--C--hHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1302 VVPQSP-FLFEG-SLRDNLDPFHM-N--D--DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1302 ~VpQdp-~lF~g-TIReNLdp~~~-~--s--d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
|++|++ .+++. |+++|+..... . . +.++.+ .+..+|+.. ........||||||||++||||++
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLG---------YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHH---------HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 999986 46654 99999964321 1 1 122233 333334532 334445579999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEe-CCeEeee
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-HGHLPHC 1436 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~-~G~vvE~ 1436 (1445)
++|++|||||||++||..+.+.+.+.|++. +.|||+|||+++.+.. ||+|++|+ +|++.++
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 999999999999999999999999999875 5699999999998875 89999998 8999876
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=513.42 Aligned_cols=478 Identities=22% Similarity=0.256 Sum_probs=352.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHH
Q 000522 945 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1024 (1445)
Q Consensus 945 ~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~ 1024 (1445)
...+.++..++..+|++.+.+.+.+.-.+++..++...+++|..--...+....++ |++.+...+...-...+...
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~Lr----DL~qvR~Fltg~g~~A~fDa 144 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLR----DLDQVRQFLTGTGLTAFFDA 144 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccchh----hHHHHHHHHcCCCcchhcCC
Confidence 34455667788899999999999999999999999999888876554444455554 55555544422110000000
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHH
Q 000522 1025 VGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104 (1445)
Q Consensus 1025 ~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~ 1104 (1445)
-..-..+.+++...||+.++.+.-.++...+...-...+++--+...+....-..+..-+..+..+|+|.|......+++
T Consensus 145 PW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW 224 (580)
T COG4618 145 PWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRW 224 (580)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHH
Confidence 00011122334455666554444333333322222222222222233334444567778899999999999987777666
Q ss_pred HHHHHHHH----HHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHH
Q 000522 1105 KEHVVLYQ----RTSYSEL---TASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1177 (1445)
Q Consensus 1105 ~~~~d~~~----~~~~~~~---~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~ 1177 (1445)
.+....+. ++..... ...+-+-..+|. .+. .+-+++. ..+..++|.+...-........++.
T Consensus 225 ~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs---~iL---g~GA~Lv-----i~ge~t~G~mIA~SIl~gRaLaPid 293 (580)
T COG4618 225 GRFNAAYLSAQERASDRNGAFGALSRALRMALQS---AVL---GLGAWLV-----IKGEITPGMMIAGSILSGRALAPID 293 (580)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHH---hcceeeE-----EcCcCCcchhhHHHHHhhhhhccHH
Confidence 55444433 3332211 111111111111 111 1111111 1234567766555555555667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEEC
Q 000522 1178 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVG 1257 (1445)
Q Consensus 1178 ~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvG 1257 (1445)
..+..|.++..+..|..|+.++++..++.... ...| - .+|.+.++++++.=++..+|+|+|+||+++|||-+||+|
T Consensus 294 ~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP--~-P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIG 369 (580)
T COG4618 294 LAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLP--A-PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIG 369 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCC--C-CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEEC
Confidence 99999999999999999999999765543211 1111 1 268999999999666666799999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHc
Q 000522 1258 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKC 1336 (1445)
Q Consensus 1258 rTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~ 1336 (1445)
|||||||||.++|.|..+|.+|+|.+||-|+.+.+.+++-++|||.|||-.||+|||+|||.-|+ +.+++.|.+|.+.+
T Consensus 370 PSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lA 449 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLA 449 (580)
T ss_pred CCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999997666 66778899999999
Q ss_pred cHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHh-CCCcEEEEec
Q 000522 1337 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIA 1413 (1445)
Q Consensus 1337 ~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~-~~~~TvI~Ia 1413 (1445)
+.+|.|-.+ ||||.+||+|..|||||||||+||||++.+|++++||||-||||.+-|+.+.++|.+. .+|+|+|+||
T Consensus 450 gvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvia 529 (580)
T COG4618 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA 529 (580)
T ss_pred ChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999999999 9999999999999999999999999999999999999999999999999999998765 4799999999
Q ss_pred cChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1414 HRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1414 Hrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||.+.+..+|+|+||++|++..+|+-+|
T Consensus 530 HRPs~L~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 530 HRPSALASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred cCHHHHhhcceeeeecCChHHhcCCHHH
Confidence 9999999999999999999999997543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=552.12 Aligned_cols=519 Identities=15% Similarity=0.112 Sum_probs=374.8
Q ss_pred HHH-HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 273 ICC-AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 351 (1445)
Q Consensus 273 l~~-~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir 351 (1445)
+++ .+++.++..+++.++..++....|.+++.+++..... .....+. +++..++..++.....+...+.+.++.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-GQGSLFS----FGGLCLLALLFRIGADIFPAYAGMHII 85 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 7788888888899999999999999999887632111 1111111 112233444555566677788899999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--HhHHHHHHHHHHH
Q 000522 352 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLL-YT--QVKFAFVSGLAIT 428 (1445)
Q Consensus 352 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL-~~--~lg~a~l~~~~~~ 428 (1445)
..+...+|+|.++++.....+.++|++++.++.|++.+......+..+....+.+++++.++ +. .+++.+ ++++
T Consensus 86 ~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~---l~~~ 162 (555)
T TIGR01194 86 ANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAIT---ISAI 162 (555)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHH
Confidence 99999999999999998888889999999999999999987655555554444444333332 22 233322 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 429 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQ--IFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506 (1445)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~--~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 506 (1445)
++.+.+..+..++..+..++..+..++..+.+.|.+.|++++|.++.++ ...+++++.-++-.+...+..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T TIGR01194 163 IIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAEN 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334455566677777788888899999999999999999999854 33333333222211211111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHH---hCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhh
Q 000522 507 FWATTPTLFSLFTFGLFAL---MGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1445)
Q Consensus 507 ~~~~~~~~~~~~~f~~~~~---~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 583 (1445)
+.... ..+.++.+.+ ..+.++.+.+++++.+...+..|+..+...+..+.++.+|.+||.++++.++.++...
T Consensus 243 ~~~~~----~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 243 FGQLL----FFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 11111 1111111111 1257999999999999999999999999999999999999999999986422111000
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC
Q 000522 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~ 663 (1445)
....... ............++++|++|+|+..+. ..+++|+|+||++++||+++|+||||||||||+++|+|+++|
T Consensus 319 ~~~~~~~---~~~~~~~~~~~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 319 ELSDADN---VLLLAHDKSVDSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred ccccccc---ccccccCCCCceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 0000000 000000012356999999999974311 113469999999999999999999999999999999999999
Q ss_pred CCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000522 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730 (1445)
Q Consensus 664 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~ 730 (1445)
++|+|.++| .++||+|+|++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|.
T Consensus 395 ~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---- 468 (555)
T TIGR01194 395 QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT---- 468 (555)
T ss_pred CCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc----
Confidence 999999986 48999999999999999995 33456777889999999999999999999984
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCE
Q 000522 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1445)
Q Consensus 731 g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~ 810 (1445)
.+||||||||++||||++++|+|+|||||||+||+++++.+.+.++.....+++|+|+||||++.+..||+|++|++|+
T Consensus 469 -~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 469 -TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547 (555)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999999987643221235899999999999999999999999999
Q ss_pred EEEe
Q 000522 811 VKWI 814 (1445)
Q Consensus 811 i~~~ 814 (1445)
+++.
T Consensus 548 i~~~ 551 (555)
T TIGR01194 548 IVKD 551 (555)
T ss_pred EEEe
Confidence 9864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-57 Score=508.22 Aligned_cols=515 Identities=22% Similarity=0.301 Sum_probs=382.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 286 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAI---ALGLTS---ILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359 (1445)
Q Consensus 286 l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~---~l~~~~---~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy 359 (1445)
++.++.-++...-|.+.+.+++.+.. +...-+.+.. .+.+.+ .+..++.+...+...++..-....+-..+|
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~lta--p~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lf 299 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTA--PDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELF 299 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcC--cchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHH
Confidence 34444556677789999999988764 2222222222 222222 123556666666666666666667888899
Q ss_pred HHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH---HHHHHHHHH
Q 000522 360 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI---TILLIPVNK 436 (1445)
Q Consensus 360 ~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~---~~~~~~~~~ 436 (1445)
+|...++....-.+.+|++...|......+.-.-..+..+-...+.+++++...+. ..-...|+++ +.+...+..
T Consensus 300 rHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF~~--~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 300 RHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFI--KFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhhhh--hHhHHHHHHHHHHHHHHhheee
Confidence 99999998777677889999988776666652222333443444455555443333 3333333333 333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 437 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWL----MKTRSSEVKHLSTRKYLDAWCVFFWATTP 512 (1445)
Q Consensus 437 ~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i----~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 512 (1445)
.+...-.+++++++..-.+--....+.|-|-.+||.|+.|+...++. .+..++|-+.+.....+......+...
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l-- 455 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL-- 455 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Confidence 44444556666666665555666778888999999999998665554 344445544444333333222222111
Q ss_pred HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcc
Q 000522 513 TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYI 592 (1445)
Q Consensus 513 ~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1445)
.+.....+.+|.+..+.+++|...-...++-.+..|++.+......+....+-++|+.+.++.++...+.. ..++
T Consensus 456 gll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P---~a~p-- 530 (790)
T KOG0056|consen 456 GLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP---GAPP-- 530 (790)
T ss_pred HHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC---CCCC--
Confidence 11222334567677889999998888889999999999999999999999999999999997543211111 1111
Q ss_pred cCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC
Q 000522 593 SNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672 (1445)
Q Consensus 593 ~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~ 672 (1445)
.....+.|+++|++|+|+++ +++|+||||++++|+.+++|||||+||||+++.|.+.++..+|+|.+||
T Consensus 531 ------l~~~~G~i~fsnvtF~Y~p~-----k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDg 599 (790)
T KOG0056|consen 531 ------LKVTQGKIEFSNVTFAYDPG-----KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG 599 (790)
T ss_pred ------ccccCCeEEEEEeEEecCCC-----CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcC
Confidence 12356789999999999753 3459999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 -------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 -------------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
+||.|||+..|||.||..||.+|++- ..|...++.+|++.++.|..+|+|++|.|||+|..||||+
T Consensus 600 qdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE 679 (790)
T KOG0056|consen 600 QDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE 679 (790)
T ss_pred chHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence 59999999999999999999999874 4456677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHh
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~ 818 (1445)
|||||+||++.++|.|++|||+|||||.++++.|-.. +.. +..++|.|+|.||++.+-+||.|++++||+|+|.|+++
T Consensus 680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa-L~r-lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~He 757 (790)
T KOG0056|consen 680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAA-LAR-LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHE 757 (790)
T ss_pred hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH-HHH-HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHH
Confidence 9999999999999999999999999999999988654 433 67899999999999999999999999999999999999
Q ss_pred HHHhcc
Q 000522 819 DLAVSL 824 (1445)
Q Consensus 819 ~~~~~~ 824 (1445)
|+...+
T Consensus 758 eLl~rd 763 (790)
T KOG0056|consen 758 ELLKRD 763 (790)
T ss_pred HHHhcc
Confidence 998773
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-56 Score=565.70 Aligned_cols=197 Identities=22% Similarity=0.330 Sum_probs=159.5
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..++++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999543 3699999999999999999999999999999999999999999999875 3579
Q ss_pred EEEcCCCcccCccHHHhcC-C----CCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1301 AVVPQSPFLFEGSLRDNLD-P----FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1301 ~~VpQdp~lF~gTIReNLd-p----~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
+|+||++. ..-++.+|.. . +...+++++.++|+..++.+ .........||||||||++||||++++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~--------~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG--------NLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh--------HHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 99999973 2224444421 1 11234455555555554421 123445668999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEe-eecCCC
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLP-HCGCAA 1440 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vv-E~G~p~ 1440 (1445)
|++|||||||++||..+.+.+.+.+++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++.
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 9999999999999999999998888764 4 499999999999986 8999999999998 456654
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-55 Score=556.87 Aligned_cols=514 Identities=15% Similarity=0.126 Sum_probs=385.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 900 ITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS---TSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 976 (1445)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~---~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~ 976 (1445)
.+++.+++.++...+....+++.+...+.....+.... ...++++++++.++..+..++...+......+..+++|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666666776666553211110000 112233334444455555555556666677788888888
Q ss_pred HHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHH-HHHHHHHHHHHHHHHHHHH
Q 000522 977 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSKL 1055 (1445)
Q Consensus 977 ~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~pl~~~~~~i 1055 (1445)
+.+++....++.|||+ ++|++.+|+++|++.+.+.+...+..++..++.+++.++.+.. ..|.+.++++...++...+
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888888888999997 8899999999999999999988888888888888776666654 5565545444444444455
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000522 1056 QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1135 (1445)
Q Consensus 1056 ~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1135 (1445)
.+++.+..+.+.+......+.+.+.+.|.++|+++||+|+.|+.+.+++.+..++..+..+.......++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55566666666666666777888999999999999999999999999999999988888888777777777766665432
Q ss_pred H---HHHHHH-HHHHhhcCCCCCCcccHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q 000522 1136 I---ISFIAT-MAVIGSRGNLPATFSTPGL-VGLALS---YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL 1207 (1445)
Q Consensus 1136 ~---~~~~~~-~~v~~~~~~~~~~~~~~g~-vgl~l~---~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~ 1207 (1445)
. +..+.. ..++...+ ...+..+.|. ++..+. +...+..++..+...+.++.+..++.+|+.++.+.++|..
T Consensus 336 ~~~~~~~~~~g~~~~~~~~-~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~ 414 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTH-PAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVK 414 (659)
T ss_pred HHHHHHHHHHHHHHHhccc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 111111 11111110 0012334443 332333 3566788899999999999999999999999997644321
Q ss_pred cc--------CCCC--------------CCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHH
Q 000522 1208 CG--------YQSL--------------SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS 1265 (1445)
Q Consensus 1208 ~~--------~~~~--------------~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKST 1265 (1445)
.. .... .......+.|+++||+++|+++ +++|+|+||+|++||++||+|+|||||||
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKST 493 (659)
T TIGR00954 415 SGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSS 493 (659)
T ss_pred cccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHH
Confidence 00 0000 0001134679999999999643 46999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCC--------CCCChHHHHHHHHHcc
Q 000522 1266 ILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF--------HMNDDLKIWSVLEKCH 1337 (1445)
Q Consensus 1266 Ll~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~--------~~~sd~ei~~aL~~~~ 1337 (1445)
|+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|||+... ...++++++++++.++
T Consensus 494 Ll~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~ 562 (659)
T TIGR00954 494 LFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQ 562 (659)
T ss_pred HHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcC
Confidence 99999999999999999874 6789999999999999999999753 2356788999999999
Q ss_pred HHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccCh
Q 000522 1338 VKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRI 1416 (1445)
Q Consensus 1338 l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl 1416 (1445)
+.++++.- |+|+..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 563 l~~~~~~~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 563 LTHILEREGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred CHHHHhhcCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 99988766 9999876 46699999999999999999999999999999999999999999999874 89999999999
Q ss_pred hHHhhcCEEEEEeC
Q 000522 1417 STVLNMDEILILDH 1430 (1445)
Q Consensus 1417 ~ti~~~DrI~Vl~~ 1430 (1445)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999973
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=584.81 Aligned_cols=483 Identities=18% Similarity=0.211 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHh
Q 000522 339 YSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQV 417 (1445)
Q Consensus 339 ~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~l 417 (1445)
..+...+.+.+....+...+|++.++.+...+...+.|+++|.++.|++.+..... .+..+....+.+++.+.++....
T Consensus 945 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~ 1024 (1490)
T TIGR01271 945 RGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQ 1024 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888889999999999998889999999999999999987553 44555555555555555444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 000522 418 KFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTR 497 (1445)
Q Consensus 418 g~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~ 497 (1445)
++.+++.++++++.+.+..+..+..+..++.....+....+...|.++|+.+||.||+|+.+.++..+.-+...+.....
T Consensus 1025 p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1490)
T TIGR01271 1025 PYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333333333444445555555566667777788899999999999999999999999888877644322221111
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000522 498 KYLDAWCVFFWAT-TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 576 (1445)
Q Consensus 498 ~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~ 576 (1445)
.....+....... ...++..+.+ ..+.....+++.+-.++++...+..++..+...+..+..+.+|.+||.+|++.+
T Consensus 1105 ~~~~~wl~~~~~~i~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~ 1182 (1490)
T TIGR01271 1105 LSTLRWFQMRIDIIFVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLP 1182 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111121111111 1011111111 111112345666666677777888899988889999999999999999999765
Q ss_pred CcchhhhhhcCCC-----CcccCCCc-cCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcH
Q 000522 577 EYKHELEQAANSP-----SYISNGLS-NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGK 650 (1445)
Q Consensus 577 e~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGK 650 (1445)
+..+......... ........ ..-+..+.|+++|++|+|+++. +++|+|+||+|++||.++|||++||||
T Consensus 1183 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~----~~vL~~is~~I~~GekvaIvGrSGsGK 1258 (1490)
T TIGR01271 1183 QEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAG----RAVLQDLSFSVEGGQRVGLLGRTGSGK 1258 (1490)
T ss_pred CccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCC----cceeeccEEEEcCCCEEEEECCCCCCH
Confidence 4322100000000 00000000 0012346799999999997532 346999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHh
Q 000522 651 SSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717 (1445)
Q Consensus 651 Stll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~ 717 (1445)
|||+++|+|.++ .+|+|.++| +|+|+||+|.||+|||||||....++++++..++++.|+|.+.+.
T Consensus 1259 STLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~ 1337 (1490)
T TIGR01271 1259 STLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIE 1337 (1490)
T ss_pred HHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHH
Confidence 999999999997 799999987 599999999999999999998666788999999999999999999
Q ss_pred hccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhh
Q 000522 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 797 (1445)
Q Consensus 718 ~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l 797 (1445)
.+|+|.+|.|||+|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+. +.. ..+++|+|+||||++.+
T Consensus 1338 ~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~-L~~-~~~~~TvI~IaHRl~ti 1415 (1490)
T TIGR01271 1338 QFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT-LKQ-SFSNCTVILSEHRVEAL 1415 (1490)
T ss_pred hCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999999999998876 443 45789999999999999
Q ss_pred hhCCEEEEEeCCEEEEecCHhHHHhccccCccc
Q 000522 798 SAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 830 (1445)
Q Consensus 798 ~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 830 (1445)
..+|+|++|++|+|++.|+++++++.++.+.++
T Consensus 1416 ~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l 1448 (1490)
T TIGR01271 1416 LECQQFLVIEGSSVKQYDSIQKLLNETSLFKQA 1448 (1490)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHH
Confidence 999999999999999999999998755555444
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-56 Score=555.60 Aligned_cols=195 Identities=22% Similarity=0.309 Sum_probs=162.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+. ..|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcCCCccc-CccHHHhcCCCC-CCC-hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1302 VVPQSPFLF-EGSLRDNLDPFH-MND-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1302 ~VpQdp~lF-~gTIReNLdp~~-~~s-d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
|+||++.++ +.|+++|+.... ... +....++++ .+|++.........||||||||++|||||+++|+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~---------~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK---------PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH---------HCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999998754 569999986431 111 222333333 34555445556668999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||||++|+ |++...|+..+|
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~~~~~ 540 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGHASGP 540 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-CcceeeeecCCc
Confidence 99999999999999999999998864 37899999999998875 89999996 588888875544
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=529.26 Aligned_cols=508 Identities=17% Similarity=0.155 Sum_probs=362.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAG-PLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1445)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~ 347 (1445)
+++-+++.+++.++..+++.++..++.+.. |++.+.+++.+... ....+.+++.+++. .++.....+...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS--LLVLPEFLGLLLLL----MAVTLGSQLALTTLG 76 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--chHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 566777888888888888889988888874 77878888765321 11111111111111 223344556667778
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 000522 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1445)
Q Consensus 348 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~ 427 (1445)
.++...+...+|+|.++++.....+.+.|+++|.++.|++.+......+..++...+.+++++++++..-...+++.+++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888899999999999999888888999999999999999987655566677777776666555544333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 505 (1445)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g--~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 505 (1445)
+++.+.+..++.++..+..++..+..+++.+.+.|.++|++++++.+ .++.+.++..+..++-.+...+.........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 44445566777888888888999999999999999999999997433 2234444444432222111112111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhh
Q 000522 506 FFWATTPTLFSLFTFGLFALMGH---QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 582 (1445)
Q Consensus 506 ~~~~~~~~~~~~~~f~~~~~~~~---~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~ 582 (1445)
.+.. +...+.++.+.+.++ ..+.+.+.+...+...+..|+..+...++.+.++..+.+|+.+++..++..+..
T Consensus 237 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 237 NWSN----IMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHH----HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111 111111222222211 122222222222333466899999999999999999999999998654321100
Q ss_pred hhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc
Q 000522 583 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~ 662 (1445)
. ..+ .+....++++|++|+|+.+ + ++|+|+||++++|+.++|+||||||||||+++|+|+++
T Consensus 313 -~--~~~----------~~~~~~i~~~~v~f~y~~~--~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 313 -R--PQA----------FPDWQTLELRNVTFAYQDN--G---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred -c--ccc----------cCcCceEEEEEEEEEeCCC--C---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 000 0112469999999999732 2 35999999999999999999999999999999999999
Q ss_pred CCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccC
Q 000522 663 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729 (1445)
Q Consensus 663 ~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~ 729 (1445)
|++|+|.++| +++||+|+|.+|++|++|| +...+++..+++++.+++..++.. ++|. .
T Consensus 375 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~ 445 (547)
T PRK10522 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----I 445 (547)
T ss_pred CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----C
Confidence 9999999876 5999999999999999999 455677788888888888776652 3331 2
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeC
Q 000522 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDK 808 (1445)
Q Consensus 730 ~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~ 808 (1445)
+|.+||||||||++||||++++|++++||||||+||+++++.+.+.+ ..... +++|+|+|||+++.+..||+|++|++
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l-~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL-LPLLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 48899999999999999999999999999999999999999888763 22121 47899999999999999999999999
Q ss_pred CEEEEe
Q 000522 809 GQVKWI 814 (1445)
Q Consensus 809 G~i~~~ 814 (1445)
|++++.
T Consensus 525 G~i~e~ 530 (547)
T PRK10522 525 GQLSEL 530 (547)
T ss_pred CEEEEe
Confidence 999875
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=520.42 Aligned_cols=477 Identities=22% Similarity=0.290 Sum_probs=330.7
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--eEEEEcCCCC
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 682 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~p~ 682 (1445)
.+.++|++.+|.. +++++|+||++.+|+.+++||+|||||||||++|.|+..|++|+|...+ ++||++|+|.
T Consensus 3 ~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC
Confidence 4778899999842 3459999999999999999999999999999999999999999999986 7999999999
Q ss_pred CCCc-cHHHHHhcCCCC-C--hhhHHHHHH---------------------HhcchHHHhhccCC--CcccccCCCCccc
Q 000522 683 ILSG-TIRDNILFGKNY-D--PQSYSETLK---------------------ACTLDVDISLMVGG--DMAYIGEKGVNLS 735 (1445)
Q Consensus 683 l~~~-ti~~nI~~g~~~-~--~~~~~~v~~---------------------~~~l~~d~~~~~~g--d~t~vg~~g~~LS 735 (1445)
.... ||+|.+.-+... . ...|+++.. ....+.++...-.| .... .....+||
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 9866 999999876421 0 011111111 11112222221111 1111 34557899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEE-E
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK-W 813 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~-~ 813 (1445)
||||.||+|||||..+||+|||||||++||..+..++-+.+ . ..+| |+|+||||.++|.. |++|+.++.|++. +
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L-~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL-K--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 99999999999999999999999999999999999988763 2 2345 99999999999998 9999999999765 5
Q ss_pred ecCHhHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHH
Q 000522 814 IGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYA 893 (1445)
Q Consensus 814 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 893 (1445)
.|.|+...+.... . . ..+ .. ... ..+++.+ .
T Consensus 232 ~Gny~~~~~~r~~-----------------~-~------~~~----~~-------~~~-~~~~~~~-~------------ 262 (530)
T COG0488 232 KGNYSSYLEQKAE-----------------R-L------RQE----AA-------AYE-KQQKELA-K------------ 262 (530)
T ss_pred cCCHHHHHHHHHH-----------------H-H------HHH----HH-------HHH-HHHHHHH-H------------
Confidence 6777766432100 0 0 000 00 000 0000000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 894 KFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 973 (1445)
Q Consensus 894 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~ 973 (1445)
+..|+..
T Consensus 263 ----------------------------~~~~i~r--------------------------------------------- 269 (530)
T COG0488 263 ----------------------------EQEWIRR--------------------------------------------- 269 (530)
T ss_pred ----------------------------HHHHHHH---------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000522 974 VHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYS 1053 (1445)
Q Consensus 974 lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~ 1053 (1445)
+.
T Consensus 270 ----------------------------~~-------------------------------------------------- 271 (530)
T COG0488 270 ----------------------------GK-------------------------------------------------- 271 (530)
T ss_pred ----------------------------HH--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000522 1054 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLA 1133 (1445)
Q Consensus 1054 ~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~ 1133 (1445)
...+++++.
T Consensus 272 ----~~~~~~k~a------------------------------------------------------------------- 280 (530)
T COG0488 272 ----AAASKAKKA------------------------------------------------------------------- 280 (530)
T ss_pred ----hccchHHHH-------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCccccc-c-
Q 000522 1134 AFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY--MDVPQEELC-G- 1209 (1445)
Q Consensus 1134 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~--~~~~~e~~~-~- 1209 (1445)
+......+|+.+- ...+.+... .
T Consensus 281 -----------------------------------------------------~sr~k~l~k~~~~~~~~~~~~~~~~~~ 307 (530)
T COG0488 281 -----------------------------------------------------KSRIKRLEKLEARLAEERPVEEGKPLA 307 (530)
T ss_pred -----------------------------------------------------HHHHHHHHHHHhhhhhcccccccccce
Confidence 0000011111100 000010000 0
Q ss_pred -CCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeC
Q 000522 1210 -YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1288 (1445)
Q Consensus 1210 -~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1288 (1445)
...+++.-+.+-.++++|+++.|.++ .++++++||.|.+|++|||+||+|+|||||+++|.|...|.+|+|.+.-
T Consensus 308 ~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~--- 383 (530)
T COG0488 308 FRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE--- 383 (530)
T ss_pred eeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC---
Confidence 00111111224479999999999765 6799999999999999999999999999999999999999999998843
Q ss_pred CCCChHhhhcceEEEcCCC-cccC-ccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1289 INTPVRDLRGRFAVVPQSP-FLFE-GSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1289 ~~i~~~~lR~~i~~VpQdp-~lF~-gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
.-++||.+|+- .++. .|+-+++.... ...+.++...|.+.++...- +......||||||-|
T Consensus 384 --------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~--------~~~~v~~LSGGEk~R 447 (530)
T COG0488 384 --------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED--------QEKPVGVLSGGEKAR 447 (530)
T ss_pred --------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH--------HhCchhhcCHhHHHH
Confidence 13699999998 3443 38888886544 22367777777776654321 122334699999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeee-cCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHC-GCA 1439 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~-G~p 1439 (1445)
+.||+.++.+|.+|||||||..||.+|-+.+.++|.++ + -|||+|||+...+.. |++|+++++ ++.++ |.+
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~-Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y 520 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-E-GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGY 520 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCH
Confidence 99999999999999999999999999999999999864 4 499999999999987 799999998 77777 543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=500.02 Aligned_cols=437 Identities=25% Similarity=0.338 Sum_probs=333.5
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|++=+|+. .++|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 45788999888753 2459999999999999999999999999999999999999999999997
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCCCC-------hhh----HHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000522 673 ---SIAYVPQVPWILS-GTIRDNILFGKNYD-------PQS----YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~~~-------~~~----~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGG 737 (1445)
.|+.|.|++-|++ -||.|||.+|++.. ... .+++++..++..| ......+||+|
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~Lsia 149 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIA 149 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHH
Confidence 4999999999875 59999999887532 222 2233333333211 23445689999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecC
Q 000522 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 738 QkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1445)
|||-|+||||++.+++|+|||||||+|+.+..+++|+. +.....+|.++|+|||+++++.. ||+|.||+||+.+..++
T Consensus 150 qrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~-ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 150 QRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999999986 44435578999999999998776 99999999999875433
Q ss_pred H-hHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhh
Q 000522 817 S-ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF 895 (1445)
Q Consensus 817 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~ 895 (1445)
. .++ +.++.. .
T Consensus 229 ~~~~~------------------------------------------------~~~~lv----------~---------- 240 (500)
T COG1129 229 TAAET------------------------------------------------SEDELV----------R---------- 240 (500)
T ss_pred cccCC------------------------------------------------CHHHHH----------H----------
Confidence 1 110 000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 896 SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 975 (1445)
Q Consensus 896 ~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh 975 (1445)
+.
T Consensus 241 -----------------------------~M------------------------------------------------- 242 (500)
T COG1129 241 -----------------------------LM------------------------------------------------- 242 (500)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000522 976 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL 1055 (1445)
Q Consensus 976 ~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i 1055 (1445)
+|
T Consensus 243 -------------------vG----------------------------------------------------------- 244 (500)
T COG1129 243 -------------------VG----------------------------------------------------------- 244 (500)
T ss_pred -------------------hC-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000522 1056 QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1135 (1445)
Q Consensus 1056 ~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~ 1135 (1445)
|++.
T Consensus 245 --------r~~~-------------------------------------------------------------------- 248 (500)
T COG1129 245 --------RELE-------------------------------------------------------------------- 248 (500)
T ss_pred --------cchh--------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCC
Q 000522 1136 IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP 1215 (1445)
Q Consensus 1136 ~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~ 1215 (1445)
+..++. +.
T Consensus 249 -----------------------------------------------------------------~~~~~~-------~~ 256 (500)
T COG1129 249 -----------------------------------------------------------------DLFPEP-------PE 256 (500)
T ss_pred -----------------------------------------------------------------hhcccc-------cc
Confidence 000000 00
Q ss_pred CCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC-hH
Q 000522 1216 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VR 1294 (1445)
Q Consensus 1216 ~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~ 1294 (1445)
.-+..-.++++|++.. ..++|+||++++||.+||.|--|||+|-++.+|+|.-++.+|+|.+||.++.--+ .+
T Consensus 257 ~~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 257 EGIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred cCCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 0011124677777642 2589999999999999999999999999999999999999999999999886655 55
Q ss_pred hhhcceEEEcCCCc---cc-CccHHHhcCCCC--CCChH-HHHHHHHHccHHHHHHhC-----CCchhhhcCCCCCChhH
Q 000522 1295 DLRGRFAVVPQSPF---LF-EGSLRDNLDPFH--MNDDL-KIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSVGQ 1362 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~---lF-~gTIReNLdp~~--~~sd~-ei~~aL~~~~l~~~i~~l-----gLdt~v~e~G~~LSgGQ 1362 (1445)
..+..|+|||-|-- +| .-+|++|+.... .++.. -+...-++.-..++++.+ +.+..+ .+||||.
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGN 406 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGN 406 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchh
Confidence 88889999999874 44 559999986431 11100 133334444455667766 344444 3799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAA 1440 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~ 1440 (1445)
+|+++|||.|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.++.+. .||||+||.+|+++..=+..
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999999875 6899999999999987 69999999999998754443
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=510.80 Aligned_cols=516 Identities=16% Similarity=0.171 Sum_probs=376.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 280 PYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 359 (1445)
Q Consensus 280 ~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy 359 (1445)
.++...++.++.+++....|++++.+++.+.+.+... -...++.++++.++.+++.....|...++..++|..+...++
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~-f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 175 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRN-FAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLY 175 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888999999999999999876432111 111111222233334444444555566666777777777766
Q ss_pred HHHhcC----CccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHHH
Q 000522 360 QKCLYV----RLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAF-VSGLAITILLIP 433 (1445)
Q Consensus 360 ~K~L~l----~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~lL~~~lg~a~-l~~~~~~~~~~~ 433 (1445)
++.++. +....++ ..|++.+.+++|++.+.+... .+..+...++.++.+++.++..++|.. ++.++.+++...
T Consensus 176 ~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~ 254 (659)
T TIGR00954 176 SKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGV 254 (659)
T ss_pred HHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 666653 2222232 579999999999999988654 456666777777777777776666643 333444455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000522 434 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP- 512 (1445)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~- 512 (1445)
+..++.+++.+..++..+..++-.+..+|.++|+++||+|+.|+.+.+++++.-++-.+...+.....+....+.....
T Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 255 VLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6777888888999999999999999999999999999999999998888877655555555555555544433332222
Q ss_pred ---HHHHHHHHHHHHHh-C----CCCCHhHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Q 000522 513 ---TLFSLFTFGLFALM-G----HQLDAAMVFT-C---LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH 580 (1445)
Q Consensus 513 ---~~~~~~~f~~~~~~-~----~~Lt~~~~ft-~---l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~ 580 (1445)
..+..+..+...+. . +.+|.+..+. . ..++..+..|+..+...+..+.++.++.+||.++++.++..+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~ 414 (659)
T TIGR00954 335 YTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVK 414 (659)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222223332222 2 5688876544 2 334677789999999999999999999999999996532111
Q ss_pred hhh-hhcCCCC-----------cccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCC
Q 000522 581 ELE-QAANSPS-----------YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGS 648 (1445)
Q Consensus 581 ~~~-~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~Gs 648 (1445)
... .....+. ....+..........++++|++|.|+.+ +++|+|+||++++||.++|+|||||
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-----~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 415 SGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-----DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred cccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-----CeeeecceEEECCCCEEEEECCCCC
Confidence 000 0000000 0000000011123469999999988632 2359999999999999999999999
Q ss_pred cHHHHHHHHhcCccCCCeEEEEcC--eEEEEcCCCCCCCccHHHHHhcCC--------CCChhhHHHHHHHhcchHHHhh
Q 000522 649 GKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISL 718 (1445)
Q Consensus 649 GKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~p~l~~~ti~~nI~~g~--------~~~~~~~~~v~~~~~l~~d~~~ 718 (1445)
|||||+++|+|+++|++|+|.+++ .++||+|+|+++++|++|||.++. ..++++..++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2345677889999999887776
Q ss_pred ccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh
Q 000522 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798 (1445)
Q Consensus 719 ~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~ 798 (1445)
|.|.+|..+ .+.+||||||||++||||++++|++++||||||+||+++++.+.+.+ .. .++|+|++||+++.++
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~---~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE---FGITLFSVSHRKSLWK 643 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH---cCCEEEEEeCchHHHH
Confidence 899999876 56799999999999999999999999999999999999999988763 22 3789999999999999
Q ss_pred hCCEEEEEeC
Q 000522 799 AADMVVVMDK 808 (1445)
Q Consensus 799 ~~d~i~~l~~ 808 (1445)
.||++++|+.
T Consensus 644 ~~d~il~l~~ 653 (659)
T TIGR00954 644 YHEYLLYMDG 653 (659)
T ss_pred hCCEEEEEeC
Confidence 9999999973
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=453.94 Aligned_cols=464 Identities=20% Similarity=0.268 Sum_probs=355.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 000522 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 425 (1445)
Q Consensus 347 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~ 425 (1445)
+......+.-..|.+++.|+.....+..+|.+..-+.--...|....++ +..+....++++++..++++..||......
T Consensus 10 ~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t 89 (497)
T COG5265 10 GQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTT 89 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 3334445666778888888887766666676655554444455554443 445556678999999999999998766655
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000522 426 AITILLIPVNKW-IANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSS----EVKHLSTRKYL 500 (1445)
Q Consensus 426 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~----El~~~~~~~~~ 500 (1445)
++++++..+-.+ +...-...+++.+++-.+......+.|-+-.++|.||-|+.+..+..+..+. +++......++
T Consensus 90 ~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~L 169 (497)
T COG5265 90 LVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVL 169 (497)
T ss_pred HHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHH
Confidence 555544433322 2233333444455555556677779999999999999999888777655432 22222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Q 000522 501 DAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH 580 (1445)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~ 580 (1445)
......+... .+....+.+...+..+.+|.+...-.-++...+..|++.+......+.+++...+++.+.+..+-...
T Consensus 170 n~gQ~~I~~~--~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~ 247 (497)
T COG5265 170 NFGQTAIFST--GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVS 247 (497)
T ss_pred HHhhHHHHHH--HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhc
Confidence 1111111111 11222333444456789999999999999999999999999999999999999999988886542211
Q ss_pred hhhhhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 000522 581 ELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~ 660 (1445)
... ..+.. .....+.+.|++++|.|.++ +++|+++||++++|+.++|||++|+||||+++.|.++
T Consensus 248 d~p---da~~L-------~~~~~g~v~F~~V~F~y~~~-----r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF 312 (497)
T COG5265 248 DAP---DAPPL-------WPVRLGAVAFINVSFAYDPR-----RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF 312 (497)
T ss_pred cCC---CCccc-------cccccceEEEEEEEeecccc-----chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH
Confidence 100 01110 00234679999999999753 4559999999999999999999999999999999999
Q ss_pred ccCCCeEEEEcC-------------eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCccc
Q 000522 661 MMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAY 726 (1445)
Q Consensus 661 ~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~gd~t~ 726 (1445)
+++.+|.|.++| .||.|||+..|||.|+..||.+|++. .++...++.++.++.+.++.+|+|++|.
T Consensus 313 yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~ 392 (497)
T COG5265 313 YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392 (497)
T ss_pred hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcc
Confidence 999999999998 49999999999999999999999874 5677888999999999999999999999
Q ss_pred ccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEE
Q 000522 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVM 806 (1445)
Q Consensus 727 vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l 806 (1445)
|||+|-.||||+|||||+||++.++|+|++|||+|||||.+|++.|... +.. ..+|+|.+++.||++.+-.||.|+||
T Consensus 393 VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~-l~~-~~~~rttlviahrlsti~~adeiivl 470 (497)
T COG5265 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA-LRE-VSAGRTTLVIAHRLSTIIDADEIIVL 470 (497)
T ss_pred cchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHH-HHH-HhCCCeEEEEeehhhhccCCceEEEe
Confidence 9999999999999999999999999999999999999999999998776 433 56899999999999999999999999
Q ss_pred eCCEEEEecCHhHHHhccccCcc
Q 000522 807 DKGQVKWIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 807 ~~G~i~~~g~~~~~~~~~~~~~~ 829 (1445)
++|+|+|.|+++|+++.++.+.+
T Consensus 471 ~~g~i~erg~h~~ll~~~g~ya~ 493 (497)
T COG5265 471 DNGRIVERGTHEELLAAGGLYAE 493 (497)
T ss_pred eCCEEEecCcHHHHHHcCChHHH
Confidence 99999999999999988766543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=466.05 Aligned_cols=443 Identities=26% Similarity=0.368 Sum_probs=343.7
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..+++++.+-.|+. -.+++||||++++||+.++.|.||+|||||++.|.|.++|++|+|.++|
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 46788888888762 2459999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEcCCCCCCCc-cHHHHHhcCCCC------C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY------D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~------~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
.||+|.|++-|++. ||.|||..|.+- | .++.++..+.++|+-|.+ .+...||=|+
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~ 145 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGE 145 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcch
Confidence 49999999999876 999999998753 2 245667777777776653 3456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCH
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~ 817 (1445)
||||.|-+|||++|+++|||||||.|-|...+++|+. +......|+|||+|||+++.+.. ||++-||++|+++.. .
T Consensus 146 qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt--~ 222 (501)
T COG3845 146 QQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT--V 222 (501)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee--e
Confidence 9999999999999999999999999999999999986 33324569999999999999876 999999999997532 1
Q ss_pred hHHHhccccCcccccccchhhhhhhhhhhccccchhhhhhhhhcccccCCchhhHHHHHHHHhcCccchhhHHHHHhhhh
Q 000522 818 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 897 (1445)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 897 (1445)
+.. + +. +. +|-
T Consensus 223 ~~~-----------~---------------------------~~-------t~-----~el------------------- 233 (501)
T COG3845 223 DPV-----------A---------------------------ET-------TE-----EEL------------------- 233 (501)
T ss_pred cCC-----------C---------------------------CC-------CH-----HHH-------------------
Confidence 100 0 00 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 898 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 977 (1445)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ 977 (1445)
.- ++
T Consensus 234 ---------a~-lM------------------------------------------------------------------ 237 (501)
T COG3845 234 ---------AE-LM------------------------------------------------------------------ 237 (501)
T ss_pred ---------HH-Hh------------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 978 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1057 (1445)
Q Consensus 978 ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~ 1057 (1445)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000522 1058 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1137 (1445)
Q Consensus 1058 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~ 1137 (1445)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCC
Q 000522 1138 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1217 (1445)
Q Consensus 1138 ~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~w 1217 (1445)
+ + ... . .+.+ .++.-
T Consensus 238 -------v-G--~~v--~----------------------------------------------~~~~-------~~~~~ 252 (501)
T COG3845 238 -------V-G--REV--V----------------------------------------------LRVV-------KPPST 252 (501)
T ss_pred -------c-C--Ccc--c----------------------------------------------cccc-------cCCCC
Confidence 0 0 000 0 0000 01111
Q ss_pred CCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeC-CCCChHhh
Q 000522 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDL 1296 (1445)
Q Consensus 1218 p~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di-~~i~~~~l 1296 (1445)
|..-.++++|++..-+.+ -+.+++|||++++||.+||.|-.|-|-|-|+.+|.|+..|.+|+|.++|.|+ ...+....
T Consensus 253 pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 233468999999865433 3689999999999999999999999999999999999999999999999997 66777777
Q ss_pred hc-ceEEEcCCCc----ccCccHHHhcCCCCCCCh-----H-HHHHHHHHccHHHHHHhC-----CCchhhhcCCCCCCh
Q 000522 1297 RG-RFAVVPQSPF----LFEGSLRDNLDPFHMNDD-----L-KIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSV 1360 (1445)
Q Consensus 1297 R~-~i~~VpQdp~----lF~gTIReNLdp~~~~sd-----~-ei~~aL~~~~l~~~i~~l-----gLdt~v~e~G~~LSg 1360 (1445)
|+ .+++||.|.. ..+-|+.||+-+.....+ - -=|+++++ ...+.++.. +.++++ .+|||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-~a~~li~~fdVr~~~~~~~a----~~LSG 406 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-FARELIEEFDVRAPSPDAPA----RSLSG 406 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-HHHHHHHHcCccCCCCCcch----hhcCC
Confidence 65 5999999994 556799999854322111 0 00112211 123344444 333333 47999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecC
Q 000522 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~ 1438 (1445)
|+.|++-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.|++|+-.|+.+.. ||||.||.+|+++...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999887664 69999999999999875 89999999999999998
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
|++-
T Consensus 487 ~~~~ 490 (501)
T COG3845 487 PEEA 490 (501)
T ss_pred cccC
Confidence 8864
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-51 Score=465.34 Aligned_cols=221 Identities=33% Similarity=0.626 Sum_probs=212.8
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||+|+.+++...+|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997666679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1301 ~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||||+|.+|++|+++|++++...++++++++++.+++.++++.+ +|++.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999988777889999999999999999987 999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||||++||+++++.+++.|++.+++||||+||||++++..||||+||++|+++|+|+|+++
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l 223 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKL 223 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHH
Confidence 9999999999999999999999988889999999999999999999999999999999999775
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=460.81 Aligned_cols=224 Identities=26% Similarity=0.381 Sum_probs=200.9
Q ss_pred CCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeC
Q 000522 1214 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNI 1288 (1445)
Q Consensus 1214 ~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di 1288 (1445)
+.+||..|.|+|+|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|+
T Consensus 72 ~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 72 KEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred cCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 34699999999999999997655679999999999999999999999999999999999997 5799999999999
Q ss_pred C--CCChHhhhcceEEEcCCCcccCccHHHhcCCC---CCCChHHH-----HHHHHHccHHHHHHhCCCchhhhcCCCCC
Q 000522 1289 I--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKI-----WSVLEKCHVKEEVEAVGLETFVKESGISF 1358 (1445)
Q Consensus 1289 ~--~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~---~~~sd~ei-----~~aL~~~~l~~~i~~lgLdt~v~e~G~~L 1358 (1445)
. .++...+|++++||||+|++|++|+++||++. ...++++. .++++.+++++ ++++.+++.|.+|
T Consensus 152 ~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~l~~~~~~~~~~L 226 (329)
T PRK14257 152 RSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-----EVKDDLDKAGNAL 226 (329)
T ss_pred cccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-----hhhhhhhCCcccC
Confidence 7 45667899999999999999999999999843 23444444 44566666543 4567889999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1359 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
|||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999999889999999999999998 9999999999999999
Q ss_pred CCCCC
Q 000522 1438 CAAAP 1442 (1445)
Q Consensus 1438 ~p~~~ 1442 (1445)
+|++.
T Consensus 307 ~~~~l 311 (329)
T PRK14257 307 ETKTI 311 (329)
T ss_pred CHHHH
Confidence 99874
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=381.22 Aligned_cols=214 Identities=27% Similarity=0.392 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCC-CCChHhhhcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~-~i~~~~lR~~i 1300 (1445)
.|+++||+.+|... .||||||++|++||++.||||||||||||+++|.++-+|++|+|.|||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 6999999999999999999999999999999999999999999999998774 34789999999
Q ss_pred EEEcCCCcccCc-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
|+|+|+.-||+- |+-||+.... ..+.+|-.+ + ..+.++..||......-..+|||||+||+||||||.-+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~---~--A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE---K--ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHH---H--HHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 999999999986 9999986431 122222111 1 11223333666666667789999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|+|+++|||||+||+|.-..+.+++++.. .|.|+|+|||.+...++ +|||+.||+|+|+|.|+|++.
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999999999999999998875 58899999999999998 599999999999999998764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=397.27 Aligned_cols=214 Identities=29% Similarity=0.429 Sum_probs=183.7
Q ss_pred EEEEEEEEEeCCC---CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC---hHhh
Q 000522 1223 IEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDL 1296 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~l 1296 (1445)
|+++||++.|+.. ...+|+||||+|++||..||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999863 356999999999999999999999999999999999999999999999999987766 5566
Q ss_pred hcceEEEcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1297 RGRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1297 R~~i~~VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
|++||+|+|++-|++ -|+.+|+.+-- ..+.+|+.+- ..+.++-.||....+.-..+||||||||++|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~R-----V~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR-----VAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHH-----HHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 789999999999998 69999996431 2344443221 12222223777777778889999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
..+|+||+.|||||+||++|.+.|.+.+++.- -|-|+++|||.++.+++ ||||.||++|+|+|.|+-.+
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999999999999999999987653 48999999999999987 99999999999999998654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=375.25 Aligned_cols=214 Identities=30% Similarity=0.420 Sum_probs=194.0
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-----cEEEECCeeCCC--CCh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIIN--TPV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~-----G~I~IDG~di~~--i~~ 1293 (1445)
..++++|+++.|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 469999999999999999999999999999999999999876 999999999966 689
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~~-------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
-.||+++|+|.|.|--|+.||+||+.++-+ .-|+.++++|+++.||+.++. .+.+.+..|||||+|||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-----rL~~sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-----RLHKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-----HhhCCccCCChhHHHHH
Confidence 999999999999999999999999976522 124568889999999998864 45666778999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||||.-+|+||+||||||+||+.+...|.+.|.+..++.||++|||.+.-... +|+...+-.|+++|+|+-++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999999999999899999999999997655 69999999999999998654
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=415.41 Aligned_cols=262 Identities=22% Similarity=0.300 Sum_probs=217.4
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhhhcCCCCcccCCCccCCCCCceEE
Q 000522 528 HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 607 (1445)
Q Consensus 528 ~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 607 (1445)
+.++++++|+++++++.+..|+..+|..... .+|+++|+..++.+...... . .+.+..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~i~ 82 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--D-----------FNHANVFE 82 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--C-----------CCcCceEE
Confidence 4789999999999999999999887765433 56999998766532200000 0 12345799
Q ss_pred EEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC----------
Q 000522 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---------- 672 (1445)
Q Consensus 608 ~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~---------- 672 (1445)
++|+++.|... . +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 83 ~~nls~~y~~~-~---~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 83 IRNFNFWYMNR-T---KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred EEeeEEEecCC-C---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 99999999642 1 235999999999999999999999999999999999996 5799988643
Q ss_pred -----eEEEEcCCCCCCCccHHHHHhcCCCCC----hh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 673 -----SIAYVPQVPWILSGTIRDNILFGKNYD----PQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 -----~i~y~~Q~p~l~~~ti~~nI~~g~~~~----~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
.++||||+||++++||+|||.|+..++ ++ .|+++++.|+|..+++ +.++++|.+||||||
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqk 231 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQ 231 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHH
Confidence 599999999999999999999875322 22 2677888998866553 678999999999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHh
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~ 818 (1445)
|||+||||++++|+|+||||||||||+++.+++.+. +.. +.+++|+|+|||+++++.. ||+|++|++|+|++.|+++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i~~-l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL-ILE-LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999986554 554 5567899999999999887 9999999999999999999
Q ss_pred HHHh
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~~~~ 822 (1445)
++..
T Consensus 310 ~l~~ 313 (329)
T PRK14257 310 TIFI 313 (329)
T ss_pred HHhc
Confidence 9854
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=402.97 Aligned_cols=193 Identities=24% Similarity=0.327 Sum_probs=157.1
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|.|+||+|.|.++. ..++++||.|.++++|++|||+|+|||||++++.+.+.|..|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 599999999997654 8999999999999999999999999999999999999999998864322 1233
Q ss_pred EEcC---CCcccCccHHHhcCC-CC-CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1302 VVPQ---SPFLFEGSLRDNLDP-FH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1302 ~VpQ---dp~lF~gTIReNLdp-~~-~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+--| +-.-++-|.-+|+.| +. ....+++...|.++||.... .+.++ .+||+|||.|+++||.+++.|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~----q~~p~----~~LS~Gqr~rVlFa~l~~kqP 528 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDA----QVVPM----SQLSDGQRRRVLFARLAVKQP 528 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccc----cccch----hhcccccchhHHHHHHHhcCC
Confidence 3333 334566677777654 22 34567788888888876321 22333 379999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeee
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHC 1436 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~ 1436 (1445)
.||+|||||++||.+|-....++|.+. .-+||+|+|+...|.. +++|.+.++|.+...
T Consensus 529 ~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 529 HLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred cEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 999999999999999999999999764 4489999999999987 599999999988764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=389.36 Aligned_cols=219 Identities=51% Similarity=0.890 Sum_probs=206.3
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
|.++++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975445799999999999999999999999999999999999999999999999999988988999999
Q ss_pred EEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1301 ~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+|+||+|.+|++|++||++++....++++.++++..++.+.+..+ |+++..++.+.+||+|||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999987666778889999999999998876 999999988999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p 1439 (1445)
+||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=397.41 Aligned_cols=223 Identities=42% Similarity=0.736 Sum_probs=208.3
Q ss_pred CCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhc
Q 000522 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298 (1445)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1298 (1445)
..|.|+++|++++|+.....+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.++.+ |+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876544566788899999999988888 9999999999999999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++|||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|++++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~ 240 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPEN 240 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999988767999999999999999999999999999999998764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=379.20 Aligned_cols=207 Identities=45% Similarity=0.847 Sum_probs=188.1
Q ss_pred CCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh
Q 000522 1217 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL 1296 (1445)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l 1296 (1445)
||..+.++++|++++|+....++++|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543479999999999999999999999999999999999999999999999999998888889
Q ss_pred hcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1297 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1297 R~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
|++++|+||+|.+|++|+++|+.++...+++++.++++ +++....||+||+||++||||++++|
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998765444444443332 24456789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p 1439 (1445)
+|+||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+|
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999987778999999999999988999999999999999876
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=388.62 Aligned_cols=219 Identities=35% Similarity=0.553 Sum_probs=201.7
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544579999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1303 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
+||++.+|+.|+++||..... .+.+++.++++..++.+.++.+ |+++..+..+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999999999999986543 3455677778888899888888 8898888888999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1380 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~ 222 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDE 222 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999998877899999999999998899999999999999998764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=367.03 Aligned_cols=213 Identities=30% Similarity=0.424 Sum_probs=185.2
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+|+|||++|. ...+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++..+||++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 79999999997 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcccCc-cHHHhcCCC---CCCChHHHHHHHHHccHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1303 VPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~---~~~sd~ei~~aL~~~~l~~~i~~lgLdt--~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
|=|.--||+- ||.|||..- ...+.+++.+- ..+.+...|||. ....-...|||||+||+.+||||..+|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 9999999986 999998532 23344444322 233333337765 344556789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHH-hhcCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTV-LNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti-~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|+++|||.++||+-|...+|+-+.+.. -++|+|+|||+++.. +-+|||.||++|+|+.+|+|++.
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999887654 389999999999865 55899999999999999999764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=357.42 Aligned_cols=200 Identities=28% Similarity=0.365 Sum_probs=172.3
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.|+++|++-+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+.+|++|+|.++|
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 3678888877752 3359999999999999999999999999999999999999999999998
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCC----CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 --SIAYVPQVPWILSG-TIRDNILFGK----NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
++|+|+|+..||+- ||.|||..+. ..+ +++-.+.++..+|.+..+..| ..||||||||
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQR 144 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQR 144 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHH
Confidence 37899999999975 9999999863 222 234556677778877666666 4899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
|||||||..+|+++|+|||||||||+....+++- +......|.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~v-m~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDV-MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHH-HHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 33324568899999999999987 999999999999999999987
Q ss_pred Hh
Q 000522 821 AV 822 (1445)
Q Consensus 821 ~~ 822 (1445)
..
T Consensus 224 f~ 225 (240)
T COG1126 224 FD 225 (240)
T ss_pred hc
Confidence 54
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=420.12 Aligned_cols=201 Identities=23% Similarity=0.327 Sum_probs=166.9
Q ss_pred CCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccC-
Q 000522 1235 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE- 1311 (1445)
Q Consensus 1235 ~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~- 1311 (1445)
+....|+|||=-++||-..|++|.||||||||++.|.+=.. ..+|+|+|||.+..+ +..++++|||.|++.-.+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 34568999999999999999999999999999999997653 357999999998765 789999999999886444
Q ss_pred ccHHHhcCCC------CCCChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC-CEEE
Q 000522 1312 GSLRDNLDPF------HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS-KVLC 1380 (1445)
Q Consensus 1312 gTIReNLdp~------~~~sd~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~-~ILl 1380 (1445)
-||||-|.+. .+.+++| +.++++-.+|.+.- |..||.-|..||..||.||.||=-|..|| .||.
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-----daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-----DALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-----hhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 4999998542 2233333 44555555555443 45677777889999999999999999999 8999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhH--HhhcCEEEEEeC-CeEeeecCCCCCC
Q 000522 1381 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILDH-GHLPHCGCAAAPN 1443 (1445)
Q Consensus 1381 LDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~t--i~~~DrI~Vl~~-G~vvE~G~p~~~~ 1443 (1445)
||||||+||+++...|.+.+|+.. .|+||++.-|+++. .+.+|+++.|++ |+.|-+|++.+-+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 999999999999999999999874 69999999999884 457899999976 7999999987653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=396.49 Aligned_cols=218 Identities=24% Similarity=0.352 Sum_probs=186.4
Q ss_pred CCccEEEEEEEEEeCCC---CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCC----
Q 000522 1219 FQGLIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT---- 1291 (1445)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i---- 1291 (1445)
....|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 34469999999999743 23699999999999999999999999999999999999999999999999998653
Q ss_pred ------------ChHhhhcceEEEcCCC--cccCccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhc
Q 000522 1292 ------------PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKE 1353 (1445)
Q Consensus 1292 ------------~~~~lR~~i~~VpQdp--~lF~gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e 1353 (1445)
+...+|++++||+|+| .+|++|+++|+.+... .++++. .++ ..+.++.+|++ ...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~---~~~--~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA---KKL--AKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHH---HHH--HHHHHHHcCCChhHhcC
Confidence 3567899999999998 6899999999965421 233332 222 23455556886 56778
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCC
Q 000522 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHG 1431 (1445)
Q Consensus 1354 ~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G 1431 (1445)
.+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998653 5899999999999875 59999999999
Q ss_pred eEeeecCCCC
Q 000522 1432 HLPHCGCAAA 1441 (1445)
Q Consensus 1432 ~vvE~G~p~~ 1441 (1445)
++++.|+|++
T Consensus 253 ~i~~~g~~~~ 262 (320)
T PRK13631 253 KILKTGTPYE 262 (320)
T ss_pred EEEEeCCHHH
Confidence 9999999874
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=372.95 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=184.2
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+ ..++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.|+.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999997 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-cCccHHHhcCCCC--------CCC--hH-HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000522 1302 VVPQSPFL-FEGSLRDNLDPFH--------MND--DL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1302 ~VpQdp~l-F~gTIReNLdp~~--------~~s--d~-ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1369 (1445)
||||++.. |.-||+|-+..+. ..+ |+ .+.+||+.+++.++.+. .-..||||||||+.||
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r---------~~~~LSGGerQrv~iA 150 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR---------PVDELSGGERQRVLIA 150 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC---------cccccChhHHHHHHHH
Confidence 99999754 4559988875432 112 33 47778888888776432 2235999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHH-hhcCEEEEEeCCeEeeecCCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTV-LNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti-~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||.++|+||+||||||+||....-.+.+.+++.. +++|+|+|.|+++.. +.||++++|++|+++..|+|++-
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999998875 479999999999865 56899999999999999999863
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=379.00 Aligned_cols=219 Identities=34% Similarity=0.559 Sum_probs=201.2
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+....++++|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1303 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
+||+|.+|+.|++||+..+.. .+.+++.+.++.+++.+.++.+ |+++..+....+||+|||||++||||++++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986533 3455677778888899988887 8888888888899999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1380 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|++++
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~ 222 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEE 222 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHH
Confidence 99999999999999999999998878899999999999999999999999999999998754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=395.43 Aligned_cols=210 Identities=24% Similarity=0.381 Sum_probs=180.8
Q ss_pred EEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh---hh
Q 000522 1223 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1297 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1297 (1445)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEcCCCcccC-ccHHHhcCCCC---CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000522 1298 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~-gTIReNLdp~~---~~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1369 (1445)
++|++|||++.+|+ .|+++|+.+.. ..+.+ ++.++++.+ |++.........||||||||++||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v---------gL~~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV---------GLGDKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CCchhhhCChhhCCHHHHHHHHHH
Confidence 89999999999996 69999996421 12222 233444444 554445556678999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|||+.+|+|||||||||+||+++.+.+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|+|+|.|++++
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999988643 7999999999999976 89999999999999998754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=376.13 Aligned_cols=220 Identities=39% Similarity=0.629 Sum_probs=202.5
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
|.|+++|++++|+. ..++++|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46899999999963 23699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1301 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1301 ~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
+|+||++.+|++|+++|+..+.. ..++++.++++.+++.+.++.+ |+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999976543 3456778888999999988887 89999988888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999988767899999999999999999999999999999887644
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=371.50 Aligned_cols=217 Identities=37% Similarity=0.524 Sum_probs=197.6
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
|.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999965335699999999999999999999999999999999999999999999999999888887888999
Q ss_pred EEEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1301 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1301 ~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
+|+||+|.+|..|++||+..... .+++++.++++..++.+.++.. |+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999976432 3455777889999998888776 89998888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeec
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G 1437 (1445)
+|||||||++||.++.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988889999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=364.92 Aligned_cols=206 Identities=28% Similarity=0.413 Sum_probs=180.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++++|... +||+||||+|++||.+||+||+|||||||+++++|+++|.+|+|.++|.++..... |.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999755 49999999999999999999999999999999999999999999999998766543 67999
Q ss_pred EEcCCC---cccCccHHHhcCCCC-----------CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000522 1302 VVPQSP---FLFEGSLRDNLDPFH-----------MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1302 ~VpQdp---~lF~gTIReNLdp~~-----------~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1367 (1445)
||||.. .-|+-||+|-+..+. ..+.+++.+||+++|++++. |-.++ .|||||+||+.
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----~r~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----DRQIG----ELSGGQKQRVL 149 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----CCccc----ccCcHHHHHHH
Confidence 999955 458889999986542 11347899999999998764 33454 59999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC-CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||+.+|++|+|||||+++|+.+++.|.+.|++..+ ||||++|+|+++.+.+ +|+|+.|. +++...|+|++-
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999988764 9999999999999886 79999995 667889998875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=374.40 Aligned_cols=209 Identities=32% Similarity=0.460 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCCcEEEECCeeCCCCC--hHh
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTP--VRD 1295 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~-----~~~~G~I~IDG~di~~i~--~~~ 1295 (1445)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998776 567
Q ss_pred hhcceEEEcCCCcccCccHHHhcCCCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcC--CCCCChhHHHH
Q 000522 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKES--GISFSVGQRQL 1365 (1445)
Q Consensus 1296 lR~~i~~VpQdp~lF~gTIReNLdp~~~----~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~--G~~LSgGQrQr 1365 (1445)
+|++++|+||++.+|..|++||+.+... .. ++++.++++.. |++...... +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA---------ALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc---------CCChHHhccCCcccCCHHHHHH
Confidence 8899999999999998899999975321 11 12333344443 554444433 46899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++||||++++|++|||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987656899999999998875 899999999999999998763
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=374.13 Aligned_cols=218 Identities=37% Similarity=0.629 Sum_probs=201.0
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 469999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EcCCCcccCccHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1303 VPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
+||+|.+|++|+++|+.... ..+++++.++++.+++.+.+..+ |+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 34566778888899999888887 8999999888999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1380 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||||++||+++.+.+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|++++
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~ 221 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEE 221 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 99999999999999999999988766899999999999999999999999999999888654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=355.96 Aligned_cols=212 Identities=28% Similarity=0.447 Sum_probs=176.5
Q ss_pred cEEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCC-ChHhhhc
Q 000522 1222 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-PVRDLRG 1298 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i-~~~~lR~ 1298 (1445)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+.... +.+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997542 2599999999999999999999999999999999999999999999999776543 3446788
Q ss_pred ceEEEcCCCc--ccC-ccHHHhc----CCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000522 1299 RFAVVPQSPF--LFE-GSLRDNL----DPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1370 (1445)
Q Consensus 1299 ~i~~VpQdp~--lF~-gTIReNL----dp~~~-~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1370 (1445)
.+.+|+|||. |=+ -||++-| .+.+. ...++++++|+.+||.+.. .......||||||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~--------l~R~P~eLSGGQ~QRiaIAR 154 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF--------LDRRPHELSGGQRQRIAIAR 154 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH--------HhcCchhcChhHHHHHHHHH
Confidence 8999999996 222 2666555 33221 2344577788777765433 34456679999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||.-+|++||+|||||+||....+.|.+.+.+..+ +-|.|+|||+++.+.. ||||+||++|+++|.++-++
T Consensus 155 AL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~ 228 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEE 228 (252)
T ss_pred HhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhh
Confidence 99999999999999999999999999999987765 5599999999999986 89999999999999987655
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=374.49 Aligned_cols=219 Identities=36% Similarity=0.585 Sum_probs=199.0
Q ss_pred EEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1223 IEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
++++|++++|+.. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999653 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1302 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1302 ~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
|+||+|.+|+.|++||+..... ...+++.+.++..++.+.+..+ |+++..+....+||+|||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999976432 3455677788888888888877 888888888889999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDE 223 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999988767899999999999999999999999999999887643
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=357.28 Aligned_cols=208 Identities=29% Similarity=0.424 Sum_probs=172.7
Q ss_pred EEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hh-
Q 000522 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL- 1296 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~l- 1296 (1445)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++..|++|.|.++|.|+..++-+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999997543 3699999999999999999999999999999999999999999999999999999843 34
Q ss_pred hcceEEEcCCCcccCc-cHHHhcCC---CCCCChHHHHHHHHHccHHHHHHhCCCchhhh-cCCCCCChhHHHHHHHHHH
Q 000522 1297 RGRFAVVPQSPFLFEG-SLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1297 R~~i~~VpQdp~lF~g-TIReNLdp---~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~-e~G~~LSgGQrQrl~LARA 1371 (1445)
|++||+|+|+..|++. |++||+.. +......+..++ ..+..+.+||..... .....||||||||+|||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 4579999999999876 99999862 222221111111 112222335654444 5567899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeEee
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPH 1435 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE 1435 (1445)
|+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.||++.+
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999998874 4889999999999999999999999999543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=379.64 Aligned_cols=193 Identities=22% Similarity=0.304 Sum_probs=161.2
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcc
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1445)
...+++.+|+|.|.|+.++.+++++++++.-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 347999999999999887899999999999999999999999999999999999999999988865 789
Q ss_pred eEEEcCCCccc-CccHHHhcCC----CCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCC-CCCChhHHHHHHHHHHhc
Q 000522 1300 FAVVPQSPFLF-EGSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1300 i~~VpQdp~lF-~gTIReNLdp----~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G-~~LSgGQrQrl~LARALL 1373 (1445)
|++-.|.-+=| +-.+-. +|. +...+++|+.+.|... |++.++...+ ..||||||-|+++|-...
T Consensus 429 i~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~~ee~r~hl~~~---------Gl~g~la~~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTEEEIRRHLGSF---------GLSGELALQSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHH-HHHHHHhCCCCCHHHHHHHHHhc---------CCCchhhhccccccCCcchhHHHHHHHhc
Confidence 99999977633 211111 111 1122788888777665 5555554444 469999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEee
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPH 1435 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE 1435 (1445)
.+|.+|||||||..||.++-..+-++|+. |.| -||+|+|+.+.+.. |+.++|.++|+|..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999976 444 69999999999986 89999999999975
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=377.28 Aligned_cols=219 Identities=25% Similarity=0.340 Sum_probs=195.7
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.|+++|+++.|+... .++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++|
T Consensus 2 ~i~~~nls~~~~~~~----~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEGG----NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCCC----CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 478999999996321 235999999999999999999999999999999999998 799999987
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000522 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~ 751 (1445)
.|+||||+|++|++|++||+....++++++..++++.++|...+..+|++++|.++++|.+||||||||++||||++++
T Consensus 77 ~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 77 KAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred hhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999964345667788999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhccccCccc
Q 000522 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 830 (1445)
Q Consensus 752 ~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 830 (1445)
|+|+||||||++||+.+.+.+.+. +.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....+.++
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~-l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 233 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKT-LKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHH-HHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence 999999999999999998877766 443 34578999999999999899999999999999999999998765444433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=372.31 Aligned_cols=213 Identities=28% Similarity=0.407 Sum_probs=179.5
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh---Hhhhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1299 (1445)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999963 469999999999999999999999999999999999999999999999999987764 567889
Q ss_pred eEEEcCCCcccCc-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
++|+||++.+|++ |+++|+.... ..+.++..+. ..+.++.+|++.........||||||||++||||+++
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999999986 9999996531 1222222111 1223333455544555556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999998864 37899999999998876 899999999999999987653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=365.48 Aligned_cols=211 Identities=30% Similarity=0.455 Sum_probs=188.4
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCC-CCChHhhhcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~-~i~~~~lR~~i 1300 (1445)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 78999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEcCCC--cccCccHHHhcCCCCC---CChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1301 AVVPQSP--FLFEGSLRDNLDPFHM---NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1301 ~~VpQdp--~lF~gTIReNLdp~~~---~sd~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
++|.|+| .+|..||.+.+.++.. .+.+| +.++|+.+++.+ .......+||||||||+|||.+
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~---------~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE---------LLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh---------hccCCccccCCcceeeHHhhHH
Confidence 9999999 7999999999987643 23333 445555555543 3455667899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|..+|+|||||||||+||+...+.+.+.+++..+ ++|+|+|||+++.+.. |||++||++|+++.+|+|++.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999998754 5799999999999998 899999999999999998653
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=370.41 Aligned_cols=493 Identities=19% Similarity=0.196 Sum_probs=338.6
Q ss_pred HHHhhhhhHhhhhhcccCCC---CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 000522 913 ASRNGNDLWLSYWVDTTGSS---QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLF 989 (1445)
Q Consensus 913 ~~~~~~~~wl~~w~~~~~~~---~~~~~~~~~l~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~f 989 (1445)
......++|++.|.....+. .........+.+|.+++.+...+...+.++......+.-.-+-+.++++-+... .|
T Consensus 57 l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~ 135 (604)
T COG4178 57 LLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RY 135 (604)
T ss_pred HHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ch
Confidence 33445567777776432110 001112233567777777777777778888888888888888888888888777 44
Q ss_pred cccCChh------HHHHHHHhhHHHHhhhhHHHHHHHHHHHHhHHHhhhhHHH--------------HHHH----HHHHH
Q 000522 990 FDQTPGG------RILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSY--------------VQVF----FLLLL 1045 (1445)
Q Consensus 990 f~~~~~G------~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~--------------~~~~----~~~~~ 1045 (1445)
|.-...| ..=+|+.+|+...-+..-.....++.++++++...+++.- ..|. ++++.
T Consensus 136 y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Y 215 (604)
T COG4178 136 YRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIY 215 (604)
T ss_pred HHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHH
Confidence 3333332 3346899998877665444444555555444433333221 1111 11111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000522 1046 VPFW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW 1124 (1445)
Q Consensus 1046 ~pl~-~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1124 (1445)
+++. .+..++.+...+..-+..+.|..-| ....-.-+....|-.|+-|+...++..+..+.-.+.+......+.+
T Consensus 216 a~~~s~~~~~iGr~Li~LN~~~~~~EA~fR----~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~ 291 (604)
T COG4178 216 AISASLLTHLIGRPLIRLNFERQKLEADFR----YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIR 291 (604)
T ss_pred HHHHHHHHHHHccccccccHHHHHHHHHHH----HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 1222444444444444444444443 3344455677788899999888877777666666655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Q 000522 1125 LSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV-- 1202 (1445)
Q Consensus 1125 l~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~-- 1202 (1445)
++..-...+-+.+.+-.+++. ...-.+..+.|.++.+.....++...++|++..+.++.+-...+.|+.++.+.
T Consensus 292 l~~~~~gy~~~s~v~P~li~a----p~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~ 367 (604)
T COG4178 292 LTWFQLGYGWLSVVLPILIAA----PRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALE 367 (604)
T ss_pred hHHhhhhhhHHHHHHHHHhcc----HhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444333332222211111111 01113456678888888888899999999999999999999999999998732
Q ss_pred ----CccccccCC-CCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Q 000522 1203 ----PQEELCGYQ-SLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1277 (1445)
Q Consensus 1203 ----~~e~~~~~~-~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~ 1277 (1445)
+++...... .....-..+..|+|+|++..-+++. ..|+++||+|+|||.+-|.|+||||||||+++|.|+.+--
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g 446 (604)
T COG4178 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG 446 (604)
T ss_pred hccCcccccCcccccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC
Confidence 222111100 0000000147899999999987654 7899999999999999999999999999999999999999
Q ss_pred CcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcC-CCC--CCChHHHHHHHHHccHHHHHHhC-CCchhhhc
Q 000522 1278 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFH--MNDDLKIWSVLEKCHVKEEVEAV-GLETFVKE 1353 (1445)
Q Consensus 1278 ~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLd-p~~--~~sd~ei~~aL~~~~l~~~i~~l-gLdt~v~e 1353 (1445)
+|+|..-. -+++-++||.|++-.||+||-|. |.. .++|+|+.++|.+|||.+.++++ +.+.
T Consensus 447 ~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~---- 511 (604)
T COG4178 447 SGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR---- 511 (604)
T ss_pred CCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc----
Confidence 99987631 23589999999999999999985 333 37899999999999999999987 4444
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeC
Q 000522 1354 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1430 (1445)
Q Consensus 1354 ~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~ 1430 (1445)
-..-||+||||||++||.+|++|++++||||||+||.++|..+.+.++++..++|||.|+||.....-.++.+-+++
T Consensus 512 W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 512 WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 23359999999999999999999999999999999999999999999999999999999999887777777666543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=376.74 Aligned_cols=212 Identities=28% Similarity=0.440 Sum_probs=183.4
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++||+.+|++.. +|+|+||+|+.||.++++|||||||||++++|.|+.+|++|+|.|||.|+.++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997543 999999999999999999999999999999999999999999999999999999976 7899
Q ss_pred EEcCCCcccCc-cHHHhcCCCCCC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
+|+|+..||+- ||++||.+.-+. ..+|+.+..+ +..+.++++..+......||||||||+||||||.++|+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~-----eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK-----EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHH-----HHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 99999999986 999999875332 2333322211 22233366666677788999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+++||||.|+||++....+..-|++..+ +.|+|.|||+....+. +|||+||++|+|.+.|+|.+.
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 9999999999999999988888877543 6899999999887765 799999999999999999876
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=362.92 Aligned_cols=205 Identities=28% Similarity=0.373 Sum_probs=172.8
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
|++++++..|... ......+|+|+||+|++||+.+|+|.||+|||||++++.++-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6788998888753 22234579999999999999999999999999999999999999999999988
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCCC----Chh---hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 ---SIAYVPQVPWILS-GTIRDNILFGKNY----DPQ---SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~~----~~~---~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
+||+++|++-|++ .||.|||.|..+. .++ +..+.++..+|.+.. +....+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~-----------~~yP~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA-----------DRYPAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------ccCchhcCcchhhH
Confidence 5999999999997 5999999997543 223 344444555555332 44567999999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
|+|||||..+|+|||.|||||||||+|.+.|++.+..-....|-|+++|||.++.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999986432223347799999999999998 999999999999999999887
Q ss_pred Hh
Q 000522 821 AV 822 (1445)
Q Consensus 821 ~~ 822 (1445)
..
T Consensus 230 F~ 231 (339)
T COG1135 230 FA 231 (339)
T ss_pred hc
Confidence 54
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=348.93 Aligned_cols=212 Identities=29% Similarity=0.430 Sum_probs=185.9
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC---hHhhhc
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1298 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~ 1298 (1445)
.|+++||+.+|+ +...+|+||||+|++||.|+|+|+||||||||+++|.|+.+|++|+|.++|.++...+ ++.+|+
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 589999999997 4567999999999999999999999999999999999999999999999999998888 677789
Q ss_pred ceEEEcCCCcccCc-cHHHhcCC------------CCCCChH---HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhH
Q 000522 1299 RFAVVPQSPFLFEG-SLRDNLDP------------FHMNDDL---KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1362 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~g-TIReNLdp------------~~~~sd~---ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQ 1362 (1445)
++|+|.|++-|-+. |+-+|+.. ++-++.+ +..++|+++|+.+.. -.+..+|||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A---------~qra~~LSGGQ 152 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA---------YQRASTLSGGQ 152 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH---------HHHhccCCcch
Confidence 99999999998875 89999742 2334433 355666677665543 33455799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p 1439 (1445)
+||++|||||..+|+|++=|||+|+||+++.+.|++.|++.. .|.|||+.-|.++..++ ||||+=|++|||+-.|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999998764 58999999999999876 699999999999999999
Q ss_pred CCCC
Q 000522 1440 AAPN 1443 (1445)
Q Consensus 1440 ~~~~ 1443 (1445)
++++
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 8874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=368.28 Aligned_cols=214 Identities=25% Similarity=0.373 Sum_probs=179.3
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++||+++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999653356999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EcCCCccc-CccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF-~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||+|.+| ..|+++|+.... ....++..+ ...+.++.+|++........+||+|||||++||||++++|++
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988 579999986421 112111111 122333334554444555568999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999987778999999999999875 899999999999999998753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=366.81 Aligned_cols=215 Identities=35% Similarity=0.525 Sum_probs=194.7
Q ss_pred CCccEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhh
Q 000522 1219 FQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297 (1445)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR 1297 (1445)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999753 24699999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEcCCCcccCccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1298 GRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
++++|+||+|.+|++|+++|+++... ....++++..++.++.+.++.+ |+++.+++...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999985432 3344556666677788888888 89988999899999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeE
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~v 1433 (1445)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987778999999999999999999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=342.79 Aligned_cols=469 Identities=19% Similarity=0.251 Sum_probs=325.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhHHHHHHHhhHHHHhhhhHHHHHHHHHHH
Q 000522 945 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1024 (1445)
Q Consensus 945 ~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~ll~~ll~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~ 1024 (1445)
|+++..+..+...+........+.+.-.+++.++.++++.+|+.-+++...++++.++++|+..|.-.+ ..+..+.+..
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa~ 132 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHHHHHH
Confidence 333444444444555566778889999999999999999999999999999999999999999988332 2334455666
Q ss_pred HhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhccHHHHHhcCcHH--HHHH
Q 000522 1025 VGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSED--YFMA 1102 (1445)
Q Consensus 1025 ~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~--~f~~ 1102 (1445)
+..+++.+.+++.+|.+.++.+..+++..+.+.+..+..-+--+...+....++.+++..++|.+..+...--. .+.+
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~ 212 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNN 212 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhh
Confidence 67778888888988876655544444333332222111111112222344568899999999999988765332 3333
Q ss_pred HHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Q 000522 1103 KFKEHVVLYQR----TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGN 1178 (1445)
Q Consensus 1103 ~~~~~~d~~~~----~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~ 1178 (1445)
.+...-+...+ ..........|.++.+-.+ +..+..++... ... +...........+.+-+++.+
T Consensus 213 ~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~l----IGlvf~lal~~---~w~----st~~a~tivlvlLflr~pL~s 281 (546)
T COG4615 213 LYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGL----IGLVFWLALSL---GWA----STNVAATIVLVLLFLRTPLLS 281 (546)
T ss_pred hcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhh---ccc----hhhHHHHHHHHHHHHhhHHHH
Confidence 33221111111 1111112334443322111 11111111110 110 011111111222334567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECC
Q 000522 1179 FLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGR 1258 (1445)
Q Consensus 1179 li~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGr 1258 (1445)
++..++.+-++.+|..|+.++...|+.+.-....+-|+|. .||++||.|.|.+.. --+..||++|+.||.|-|+|.
T Consensus 282 ~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~ 357 (546)
T COG4615 282 AVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGG 357 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECC
Confidence 8999999999999999999987644332222223334464 699999999998654 457889999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccH
Q 000522 1259 TGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338 (1445)
Q Consensus 1259 TGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l 1338 (1445)
+||||||++++|.|+|.|++|+|.+||.+++.-++++.|+-++-|.-|-+||+.++ .|.+..+.+.+..-|++..+
T Consensus 358 NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 358 NGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999764 34444677777766766555
Q ss_pred HHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHh--CCCcEEEEeccCh
Q 000522 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE--CKGMTVITIAHRI 1416 (1445)
Q Consensus 1339 ~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~--~~~~TvI~IaHrl 1416 (1445)
.....-. |-... ...||-|||.|+++--|++.+.+|+++||=-+--|+.=.+...+.+-.. -.||||+.|||+-
T Consensus 434 ~~ktsl~--d~~fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 434 AHKTSLN--DGRFS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred hhhhccc--CCccc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 4322111 11111 1259999999999999999999999999999999999999887776443 2599999999999
Q ss_pred hHHhhcCEEEEEeCCeEeeec
Q 000522 1417 STVLNMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1417 ~ti~~~DrI~Vl~~G~vvE~G 1437 (1445)
.....+||++.|++|+++|.-
T Consensus 510 ~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=374.27 Aligned_cols=213 Identities=26% Similarity=0.418 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCeeCCCCChHhhhc
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRG 1298 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR~ 1298 (1445)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999963 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ceEEEcCCCcccCccHHHhcCCCCC---C------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000522 1299 RFAVVPQSPFLFEGSLRDNLDPFHM---N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~gTIReNLdp~~~---~------sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1369 (1445)
+++|+||+|.+|+.|+++|+.++.. . .++++.++++.+++.+.+ .....+.+.+||+|||||++||
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-----KDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-----hHHhcCCcccCCHHHHHHHHHH
Confidence 9999999999999999999975421 0 112344455555543322 1234556778999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 227 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKE 227 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999887678999999999998864 89999999999999998765
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=355.14 Aligned_cols=191 Identities=31% Similarity=0.390 Sum_probs=163.2
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------eEEE
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 676 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y 676 (1445)
.+.+++++..|.. ..+|+|+||+|++||+++|+|||||||||||++|.|...|++|+|.++| .+||
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 4678888888764 3459999999999999999999999999999999999999999999987 5899
Q ss_pred EcCCCCCCCc-cHHHHHhcCCCCC-------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000522 677 VPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1445)
Q Consensus 677 ~~Q~p~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARal 748 (1445)
|+|++-|++= ||+|||.||.+.. .++.++.++.++|...-+..| ..||||||||||||||+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHH
Confidence 9999998875 9999999986542 346778888888876655555 48999999999999999
Q ss_pred ccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeC--CEEE
Q 000522 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK--GQVK 812 (1445)
Q Consensus 749 y~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~--G~i~ 812 (1445)
..+|++++|||||+|||+.|..++-+.+..-....++|+++|||++++.- -+|||++|.+ |+|.
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999998877744322334689999999999855 4999999998 5553
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=378.87 Aligned_cols=214 Identities=30% Similarity=0.476 Sum_probs=180.4
Q ss_pred EEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC--hHhhh
Q 000522 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLR 1297 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--~~~lR 1297 (1445)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 79999999997432 46999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEcCCC--cccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCc--hhhhcCCCCCChhHHHHHHHHH
Q 000522 1298 GRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGISFSVGQRQLICLAR 1370 (1445)
Q Consensus 1298 ~~i~~VpQdp--~lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLd--t~v~e~G~~LSgGQrQrl~LAR 1370 (1445)
++++||||+| .+|+.|+++|+.+.. ..++++..+. ..+.++.+|++ +........||||||||++|||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 9999999998 578899999997532 1233322211 11223333554 4455666789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCC
Q 000522 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|+|++
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999987643 789999999999885 589999999999999998865
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=377.29 Aligned_cols=211 Identities=27% Similarity=0.418 Sum_probs=183.0
Q ss_pred cEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1222 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
.++++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 34699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCCc--ccCccHHHhcCCCCC---CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1301 AVVPQSPF--LFEGSLRDNLDPFHM---NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1301 ~~VpQdp~--lF~gTIReNLdp~~~---~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
+|++|+|. ++..|+++||.+... .+. +++.++++.+ |++........+||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~---------gL~~~~~~~~~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV---------GMQDFKEREPARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC---------CCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 99999983 566799999975421 222 2344444444 45444555567899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..||||++|++|++++.|+|++
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999998764 3899999999999998899999999999999998865
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=386.73 Aligned_cols=215 Identities=27% Similarity=0.421 Sum_probs=183.0
Q ss_pred EEEEEEEEEeCC--CCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh---hh
Q 000522 1223 IEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1297 (1445)
Q Consensus 1223 I~f~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1297 (1445)
|+++||+++|+. ...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2347999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1298 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
++++||||++.+|. .|+++|+.+.. ..++++..+ .+.+.++.+|++........+||||||||++|||||+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 89999999999986 69999996431 122222211 1233444556666666667789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|+||+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++.
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999988643 7899999999999876 899999999999999987653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=332.98 Aligned_cols=208 Identities=28% Similarity=0.366 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hhhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1299 (1445)
|+|+||+.+|+.+ +++|+||||+|++||.+=++||||||||||+++|++...|++|+|.++|.|+++++.+ -||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 7899999999999999999999999999999999999999999999999999887654 57999
Q ss_pred eEEEcCCCcccCc-cHHHhcCCCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
||+|.||--|... |+.||+.+-- .... +++.++|+.+||.+ ....-...|||||+||+|||||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~---------k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH---------KARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch---------hhhcCccccCchHHHHHHHHHH
Confidence 9999999988765 9999986431 1222 34556666666554 3444566899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhc-CEEEEEeCCeEeeecCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLPHCGCAA 1440 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~-DrI~Vl~~G~vvE~G~p~ 1440 (1445)
+..+|++||=||||.|||+++...|++.+.+.- .|.||++.||+.+.+.++ -|++.+++|+++....+.
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~g 222 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccccC
Confidence 999999999999999999999999999998764 599999999999999987 789999999999877654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=369.65 Aligned_cols=210 Identities=32% Similarity=0.453 Sum_probs=182.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCcccCccHHHhcCCCCCCC---hHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1302 VVPQSPFLFEGSLRDNLDPFHMND---DLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~VpQdp~lF~gTIReNLdp~~~~s---d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
|+||+|.+|+.|+++|+....... ++++.+. ++.+|++ ........+||||||||++||||++++|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---------LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHH---------HHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999997532211 2233333 3344664 23456677899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999998763 38999999999999875 899999999999999988653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=364.87 Aligned_cols=213 Identities=26% Similarity=0.389 Sum_probs=180.4
Q ss_pred cEEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh---h
Q 000522 1222 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1296 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---l 1296 (1445)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEcCCCcccCc-cHHHhcCCC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1297 R-GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1297 R-~~i~~VpQdp~lF~g-TIReNLdp~---~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
| ++++|+||+|.+|++ |+++|+.+. .....++..+ .+.+.++.+|++........+||||||||++||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 3 679999999999876 999998642 1122221111 12333444466666666677899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p 1439 (1445)
++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|+|++.|+-
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999998763 48999999999999999999999999999988763
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=346.44 Aligned_cols=215 Identities=27% Similarity=0.415 Sum_probs=184.3
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hhh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1297 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1297 (1445)
-.|++++|+++|.. ..|++||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++.+ .+|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 46999999999964 4799999999999999999999999999999999999999999999999999988864 569
Q ss_pred cceEEEcCCCcccCc-cHHHhcCC-CCCC---ChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHHH
Q 000522 1298 GRFAVVPQSPFLFEG-SLRDNLDP-FHMN---DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~g-TIReNLdp-~~~~---sd~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LARA 1371 (1445)
+++|++.|+..||+. ||+||+.+ ..++ +++++.+. ... .++..||... ..--.+.||||.+.|.+||||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~l-v~~----KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL-VLM----KLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHH-HHH----HHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 999999999999987 99999974 3333 44444331 111 1222277666 334566899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+.-+|+|+++|||||+||+-+...+-+.|++.. -+.|+|+|||+++++.. ||||+++.+|+|+-.|+|+++
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999988887754 38999999999999987 599999999999999999876
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=374.57 Aligned_cols=211 Identities=24% Similarity=0.365 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999632 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCC--cccCccHHHhcCCCCC---CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1302 VVPQSP--FLFEGSLRDNLDPFHM---NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1302 ~VpQdp--~lF~gTIReNLdp~~~---~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
|+||+| .+|..|+++|+.+... .+. +++.++++.+++ ..........||||||||++|||||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L---------~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM---------WDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC---------HHHhcCChhhCCHHHHHHHHHHHHH
Confidence 999998 6788999999975321 121 234444554444 3334444557999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|++++.|+|++.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999998764 4899999999999985 5899999999999999987643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=372.70 Aligned_cols=215 Identities=27% Similarity=0.384 Sum_probs=183.8
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CC
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1292 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~ 1292 (1445)
.+.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 567999999999964 369999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHhhhcceEEEcCCCcccCccHHHhcCCCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000522 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1445)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lF~gTIReNLdp~~----~~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1364 (1445)
...+|++++|+||+|.+|+.|+++|+.+.. ..+. ++++++++.+++.+. +....++...+||+||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-----VKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-----hHHHHhcCCCCCCHHHHH
Confidence 667899999999999999999999997531 1222 334555555554321 123456667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|++||||++++|+||||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999987678899999999999865 89999999999999998764
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=369.78 Aligned_cols=218 Identities=26% Similarity=0.413 Sum_probs=182.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcceE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999988876654 57799
Q ss_pred EEcCCCcccCc-cHHHhcCCCCCC-ChHHH-------HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHMN-DDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~~-sd~ei-------~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
|+||+|.+|++ |+++|+...... ....+ ...-......+.++.+|++...+.....||||||||++||||+
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 999998643211 00000 0000111234455555777777777778999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+++|++|||||||++||..+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999999999999999999999998764 68999999999999876 899999999999999988654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=370.02 Aligned_cols=213 Identities=29% Similarity=0.396 Sum_probs=180.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC---hHhhhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~~ 1299 (1445)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 46999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred eEEEcCCCcccC-ccHHHhcCCCCC------------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1300 FAVVPQSPFLFE-GSLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1300 i~~VpQdp~lF~-gTIReNLdp~~~------------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
++|+||++.+|. .|+++|+.+... .+++. .....+.++.+|++......+..||||||||+
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE------KQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHH------HHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 999999998887 699999964211 11111 01122334444666556667778999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||||++++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+. -||+|++|++|++++.|+|++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 99999999999999999999999999999999998864 3899999999999998 5899999999999999988654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=376.28 Aligned_cols=215 Identities=26% Similarity=0.385 Sum_probs=183.0
Q ss_pred cEEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCC----ChH
Q 000522 1222 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~ 1294 (1445)
.|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 379999999996432 3699999999999999999999999999999999999999999999999999754 346
Q ss_pred hhhcceEEEcCCC--cccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000522 1295 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp--~lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~L 1368 (1445)
.+|++|+||||+| .+|+.|+++|+.+.. ..+.++..+. ..+.++.+||++ ..+..+.+||||||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 7899999999998 588889999996532 1232232221 234455558874 4566778999999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|+|.+
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999998763 4899999999999886 589999999999999999865
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=362.52 Aligned_cols=202 Identities=29% Similarity=0.395 Sum_probs=171.7
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hhhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1299 (1445)
++++|++++|+.+.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999965434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred eEEEcCCCcccC-ccHHHhcCCCC---CC----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1300 FAVVPQSPFLFE-GSLRDNLDPFH---MN----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1300 i~~VpQdp~lF~-gTIReNLdp~~---~~----sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
++|+||+|.+|. .|++||+.... .. .++++.++++.+ |++........+||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKV---------GLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc---------CChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999887 49999996421 11 123344445444 44444444556899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeE
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~v 1433 (1445)
|+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998763 47999999999999875 799999999985
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.09 Aligned_cols=212 Identities=26% Similarity=0.405 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcceE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1445)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988877654 67899
Q ss_pred EEcCCCcccCc-cHHHhcCCCCCCC-hHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHMND-DLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~~s-d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
|+||++.+|++ |+++|+.+..... +.+..+. +.+.++.+ +++...+.....||+|||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 9999996542211 1111111 12223333 355555666678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 99999999999999999999998764 57999999999998766 89999999999999988754
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=362.21 Aligned_cols=206 Identities=29% Similarity=0.440 Sum_probs=173.3
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .|++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 469999999999999999999999999999999999999999999999999986543 5778999
Q ss_pred EcCCCcccC-ccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||+|.+|. .|+++|+..... .+.++..+ ...+.++.+|++........+||||||||++|||||+++|++
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 599999964311 11111111 122334444666556666678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998864 38999999999998765 8999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.06 Aligned_cols=206 Identities=29% Similarity=0.390 Sum_probs=174.6
Q ss_pred EEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh----h
Q 000522 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----L 1296 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~----l 1296 (1445)
++++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996531 46999999999999999999999999999999999999999999999999998877433 4
Q ss_pred hcceEEEcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1297 RGRFAVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1297 R~~i~~VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
|++++|+||+|.+|.+ |++||+..... ....+. ...+.+.++.+|++........+||||||||++||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 6789999999999987 99999975321 111111 11233444555777666667778999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhhcCEEEEEeCCeE
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~v 1433 (1445)
+++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999988754 7999999999999888999999999985
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=368.14 Aligned_cols=213 Identities=29% Similarity=0.388 Sum_probs=179.9
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh---Hhhhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1299 (1445)
++++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999987654 346889
Q ss_pred eEEEcCCCcccC-ccHHHhcCCCCC------------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1300 FAVVPQSPFLFE-GSLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1300 i~~VpQdp~lF~-gTIReNLdp~~~------------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
++|+||++.+|. .|+++|+..... ..+++ .....+.++.+|++........+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED------KERALSALERVGLADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHH------HHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 999999999887 599999964211 01110 11123334444666556667778999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+|++.
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999998764 37899999999999865 899999999999999998764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=349.40 Aligned_cols=178 Identities=33% Similarity=0.547 Sum_probs=166.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+...+++++|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975444699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
+||+|.+|++|++||+ ..+||+|||||++||||++++|++||||
T Consensus 80 ~~q~~~~~~~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~lllD 123 (178)
T cd03247 80 LNQRPYLFDTTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPIVLLD 123 (178)
T ss_pred EccCCeeecccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 3479999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeec
Q 000522 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G 1437 (1445)
|||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 124 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999998877789999999999999999999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=375.12 Aligned_cols=215 Identities=29% Similarity=0.444 Sum_probs=180.5
Q ss_pred EEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCC----CChHh
Q 000522 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1295 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i~~~~ 1295 (1445)
|+++||+++|++.. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhcceEEEcCCC--cccCccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000522 1296 LRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1296 lR~~i~~VpQdp--~lF~gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1369 (1445)
+|++++||+|+| .+|..|+.+|+.+... .+.+++.+ ...+.++.+|++ ........+||||||||++||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 899999999998 7899999999975321 22222211 112333334664 234566678999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|++++.|+|++.
T Consensus 157 ~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999998754 4899999999999885 5999999999999999998763
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=366.10 Aligned_cols=211 Identities=28% Similarity=0.384 Sum_probs=177.9
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999876653 3678999
Q ss_pred EcCCCcccC-ccHHHhcCCCCCC-------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~~~-------sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+||+|.+|. .|+++|+.+.... +..+.. ..+.+.++.+|++........+||+|||||++|||||++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999986 5999999753211 111111 112333444466655566667899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999987643 7899999999998765 899999999999999998653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=362.01 Aligned_cols=209 Identities=27% Similarity=0.427 Sum_probs=175.7
Q ss_pred EEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 269999999999999999999999999999999999999999999999999976 346778999
Q ss_pred EEEcCCCcccCc-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+|+||+|.+|++ |++||+.... ..+.++..+ ...+.++.+|++........+||||||||++||||++++|
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999985321 112211111 1123334446655566667789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999998764 48999999999998875 8999999999999865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=355.52 Aligned_cols=197 Identities=30% Similarity=0.473 Sum_probs=179.2
Q ss_pred EEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcc
Q 000522 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1445)
++++||+++|++.. +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 4699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1300 i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
++|+||+|.+|++|++||+.+....++++.+++++.+++.+.+..+ |+++.+++.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876555666788888899998888877 89999998889999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHH-HHHHhC-CCcEEEEeccChhHHhhcCEEEEEeCCe
Q 000522 1378 VLCLDECTANVDAQTASILQN-AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1432 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~-~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1432 (1445)
+++|||||++||.++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999877766 566553 4689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=368.69 Aligned_cols=213 Identities=29% Similarity=0.426 Sum_probs=181.9
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCcccC-ccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt--~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+||+|.+|+ .|++||+..... .+.++. .....+.++.+|++. .....+.+||+|||||++||||++++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999986 599999964321 111111 112234455556664 556667789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++|+|||||++||+++.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999998864 38999999999998765 89999999999999998754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=371.36 Aligned_cols=215 Identities=24% Similarity=0.425 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999744457999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCC--cccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1302 VVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1302 ~VpQdp--~lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
|+||+| .++..|+++|+.+.. ..++++..+ .+.+.++.+|++........+||+|||||++|||||+++|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 455679999997531 123332221 1223344446666666677799999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|++++
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999988643 589999999999998899999999999999998765
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=370.08 Aligned_cols=214 Identities=29% Similarity=0.408 Sum_probs=181.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1445)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 369999999999999999999999999999999999975 589999999999875 3455
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCC----CCCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPF----HMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++|+||++.+|++|+++|+.+. +... ++++.++++.+++.+.+ +...+....+||||||||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-----KDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHHHHHH
Confidence 778999999999999999999999642 1111 23445555555553322 2234556678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987668999999999999865 899999999999999988653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=361.23 Aligned_cols=207 Identities=25% Similarity=0.377 Sum_probs=175.0
Q ss_pred EEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh---hh
Q 000522 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1297 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1297 (1445)
++++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996432 46999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1298 -GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1298 -~~i~~VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
++++|+||+|.+|+ .|++||+.... ..+..+.. + ...+.++.+|++.........||||||||++||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~---~--~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK---E--RAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH---H--HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 68999999999986 59999996521 11211111 1 123344445776666666778999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeEe
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLP 1434 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vv 1434 (1445)
+++|+||||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999998764 378999999999999999999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=369.81 Aligned_cols=215 Identities=26% Similarity=0.389 Sum_probs=182.5
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CCh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1293 (1445)
..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 36999999999964 4699999999999999999999999999999999999997 48999999999863 345
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~~----~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
..+|++++|+||++.+|..|++||+.+... .+ ++++.++++.+++.+.+ +........+||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-----KDKLNTNALSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-----HHHHhCCcccCCHHHHHH
Confidence 677899999999999999999999965321 11 23455566666553322 122344566899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|||||+++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|+|++.
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988678999999999999865 899999999999999998654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=372.03 Aligned_cols=211 Identities=25% Similarity=0.422 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCC--cccCccHHHhcCCCCC---CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1302 VVPQSP--FLFEGSLRDNLDPFHM---NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1302 ~VpQdp--~lF~gTIReNLdp~~~---~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
|+||+| .+++.|+++||.+... .+.+ ++.++++.+ ||+.........||||||||++|||||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~---------gL~~~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQV---------GMEDFLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHc---------CChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 999998 4667899999975321 2222 233334443 555555555668999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|++++
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999987653 799999999999999999999999999999998764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=370.91 Aligned_cols=217 Identities=25% Similarity=0.373 Sum_probs=184.1
Q ss_pred CCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--C
Q 000522 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--T 1291 (1445)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i 1291 (1445)
....|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999964 369999999999999999999999999999999999987 589999999999863 5
Q ss_pred ChHhhhcceEEEcCCCcccCccHHHhcCCCCC---CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1292 ~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~---~s---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
+...+|++++|+||+|.+|+.|++||+.+... .. ++++.++++.++++. +++........+||+|||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-----ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-----hhhhhhCCCcccCCHHHHHH
Confidence 66788899999999999999999999975422 11 234455566655432 22334455566899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeC-----------CeE
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-----------GHL 1433 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~-----------G~v 1433 (1445)
++||||++++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 99999999999999999999999999999999999987668999999999998865 899999996 679
Q ss_pred eeecCCCCC
Q 000522 1434 PHCGCAAAP 1442 (1445)
Q Consensus 1434 vE~G~p~~~ 1442 (1445)
+|.|+|++.
T Consensus 243 ~~~~~~~~~ 251 (269)
T PRK14259 243 VEFNETKKI 251 (269)
T ss_pred EEeCCHHHH
Confidence 999988653
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=372.55 Aligned_cols=215 Identities=27% Similarity=0.392 Sum_probs=181.9
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCC--CCChHhhhcc
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGR 1299 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~--~i~~~~lR~~ 1299 (1445)
.|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 5899999999963 346999999999999999999999999999999999999999999999999984 3445678999
Q ss_pred eEEEcCCC--cccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1300 FAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1300 i~~VpQdp--~lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
++|+||+| .+|+.|+++|+.+.. ..+.++.++. ..+.++.+|++........+||+|||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999998 578899999996521 1232222211 1223333456555566777899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|++++.
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999987753 799999999999987 5999999999999999998753
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=366.39 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=180.4
Q ss_pred EEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hhh
Q 000522 1223 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1297 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1297 (1445)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 12699999999999999999999999999999999999999999999999999877654 347
Q ss_pred cceEEEcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1298 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
++++|+||+|.+|. .|++||+.... ..+..+.. ....+.++.+|++........+||+|||||++||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 89999999999997 59999986421 11211111 11233444446665556666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999998764 37999999999999876 899999999999999987654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=367.41 Aligned_cols=212 Identities=30% Similarity=0.446 Sum_probs=179.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCeeCCCC--ChHh
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PVRD 1295 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~i--~~~~ 1295 (1445)
++++||+++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999763 4567
Q ss_pred hhcceEEEcCCCcccCccHHHhcCCCC---C-CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000522 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFH---M-NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1296 lR~~i~~VpQdp~lF~gTIReNLdp~~---~-~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1367 (1445)
.|++++|+||++.+|+.|+++|+.... . .+. +++.++++..++.+.++ ........+||||||||++
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-----DRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-----hHhhCCcccCCHHHHHHHH
Confidence 788999999999999999999996421 1 111 22333444443321110 4455666789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+|++
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999987667999999999998865 89999999999999998864
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=365.41 Aligned_cols=211 Identities=28% Similarity=0.424 Sum_probs=180.7
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998776544 468999
Q ss_pred EcCCCccc-CccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF-~gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||++.++ ..|+++|+..... .+.++.. ....+.++.+|++...+....+||||||||++||||++++|+|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999874 5799999965321 1211111 1223445555777767777778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+|++
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999998764 4799999999999998899999999999999998754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=380.33 Aligned_cols=209 Identities=27% Similarity=0.409 Sum_probs=180.7
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..|+++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+++ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999963 4699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC---CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM---NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~---~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
++|+|++.+|+. |++||+.+.-. .+++ ++.++++.. |++.........||||||||++|||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~---------gl~~~~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV---------DLAGFEDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc---------CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999986 99999975421 2222 333444444 444444555678999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+++|+||+||||||+||..+.+.+++.|++..+ ++|+|+|||+++.+.. ||||+||++|+|++.|+|++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999987654 7999999999998865 899999999999999999753
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=381.90 Aligned_cols=209 Identities=22% Similarity=0.316 Sum_probs=179.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+. ..++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999942 24699999999999999999999999999999999999999999999999999988764 47899
Q ss_pred EEcCCCcccCc-cHHHhcCCCCC---CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHM---NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~---~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
||||++.+|+. |+++|+.+... .+.. ++.++++.+ |++........+||||||||++|||||+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~---------gL~~~~~~~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARIL---------ELEPLLDRKPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc---------CChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999975422 2222 233344444 5555555566689999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|+||+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+. -||+|++|++|++++.|+|++.
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999987643 789999999999776 4899999999999999998764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=344.13 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=171.8
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
|+++|++..|.. ..+++|+||+|++||+++++|||||||||+||+|.++++|++|+|.++|
T Consensus 2 I~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 2 IEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75 (309)
T ss_pred ceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHH
Confidence 678999998862 3459999999999999999999999999999999999999999999987
Q ss_pred eEEEEcCCCCCCC-ccHHHHHhcCC---CCChh----hHHHHHHHhcchH-HHhhccCCCcccccCCCCccchHHHHHHH
Q 000522 673 SIAYVPQVPWILS-GTIRDNILFGK---NYDPQ----SYSETLKACTLDV-DISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 673 ~i~y~~Q~p~l~~-~ti~~nI~~g~---~~~~~----~~~~v~~~~~l~~-d~~~~~~gd~t~vg~~g~~LSGGQkqRv~ 743 (1445)
+||||-|+.-||+ .||.|||..-. .++++ +.++.++..+|+. +. .......|||||+|||.
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~----------~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY----------ADRYPHELSGGQQQRVG 145 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH----------hhcCchhcCcchhhHHH
Confidence 5999999999986 59999998743 35554 4556666777764 22 23445689999999999
Q ss_pred HHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchh-hhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
+||||..+|+|+|+||||+||||-+..++-+....-...-++|+|+|||++++ ++-+|||.+|++|+|+..++++++..
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999888776433223347899999999987 45699999999999999999999986
Q ss_pred c
Q 000522 823 S 823 (1445)
Q Consensus 823 ~ 823 (1445)
+
T Consensus 226 ~ 226 (309)
T COG1125 226 N 226 (309)
T ss_pred C
Confidence 5
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=356.73 Aligned_cols=202 Identities=29% Similarity=0.454 Sum_probs=174.7
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++||+++|+. .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred EcCCCcccCc-cHHHhcCCCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+||+|.+|.+ |+++|+.... ..+ ++++.++++..++.+ .......+||+|||||++||||+++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD---------RAKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH---------HHhCchhhCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999986421 111 223445555555443 3334445799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999987767999999999999875 8999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=376.46 Aligned_cols=214 Identities=28% Similarity=0.376 Sum_probs=180.1
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..|+++|++++|+. ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999997755 4578999
Q ss_pred EEEcCCCcccC-ccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1301 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1301 ~~VpQdp~lF~-gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+|+||+|.+|. .|++||+.++.. .++.+..+. ..+.++.+|+.........+||+|||||++|||||+.+|
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 99999999886 599999975332 122222111 122333334443334444579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|+|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+|++.
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999998864 47999999999999976 899999999999999998764
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=380.20 Aligned_cols=212 Identities=28% Similarity=0.404 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+++ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEcCCCcccC-ccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1302 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~VpQdp~lF~-gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
||+|++.+|+ .|++||+.+... .+..+.. ....+.++.+||+........+||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 599999975421 2222221 123344455577766777778999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|++.
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999987643 7899999999998765 899999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=373.27 Aligned_cols=214 Identities=28% Similarity=0.397 Sum_probs=180.1
Q ss_pred EEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCC----CChHh
Q 000522 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1295 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i~~~~ 1295 (1445)
++++|++++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 79999999996432 469999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhcceEEEcCCC--cccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000522 1296 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1296 lR~~i~~VpQdp--~lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1369 (1445)
.|++++|+||+| .+|+.|+++|+.+.. ..+.++..+. ..+.++.+||+. ........||+|||||++||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 888999999998 688889999996432 1233332211 223344446653 34556678999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|||+.+|+||||||||++||+.+...+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.|+|++
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998764 37899999999999865 89999999999999998765
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=346.36 Aligned_cols=196 Identities=28% Similarity=0.377 Sum_probs=167.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.+++++|+.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999976 5799999999999999999999999999999999999999999999999988433 45799
Q ss_pred EEcCCCcccCc-cHHHhcCCCCCC---C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHMN---D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~~---s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
||+|++.||+= ||++|+...-+. + .+...+.|+.+||. ..-+.-...||||||||++|||||+
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~---------~~~~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA---------GFEDKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc---------chhhcCccccChHHHHHHHHHHHHh
Confidence 99999999996 999998654322 1 22344555555544 4445567789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh-hcCEEEEEeC--CeE
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDH--GHL 1433 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~--G~v 1433 (1445)
.+|+||+||||.++||+.|...+|+-+.+.. .++||++|||+.+... -+|||+||.+ |+|
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999887764 3699999999998755 5899999999 555
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=357.17 Aligned_cols=204 Identities=31% Similarity=0.467 Sum_probs=173.1
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEE
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1445)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999975334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred cCCCc--ccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1304 PQSPF--LFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1304 pQdp~--lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
||+|. ++..|+++|+.+.. ..++.+..+ ...+.++.+|++.........||||||||++|||||+++|++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99983 67789999996531 112221111 122334444666556666778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCe
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1432 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1432 (1445)
|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999998764 47999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=368.18 Aligned_cols=213 Identities=25% Similarity=0.333 Sum_probs=180.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCC--CCChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII--NTPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~--~i~~~ 1294 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 4699999999999999999999999999999999999987 4999999999997 45666
Q ss_pred hhhcceEEEcCCCcccCc-cHHHhcCCCC---C--CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---M--NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~g-TIReNLdp~~---~--~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1364 (1445)
.+|++++++||+|.+|++ |+++|+.... . ... +++.++++..++.+.+ .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-----KDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-----hhhhccChhhCCHHHHH
Confidence 788999999999999976 9999996421 1 011 2344444444433211 12345556689999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+|++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999987667999999999999875 89999999999999998865
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=371.64 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=179.6
Q ss_pred cEEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCC--------
Q 000522 1222 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN-------- 1290 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~-------- 1290 (1445)
.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999996532 269999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHhhhcceEEEcCCC--cccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCc-
Q 000522 1291 ----------------TPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE- 1348 (1445)
Q Consensus 1291 ----------------i~~~~lR~~i~~VpQdp--~lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLd- 1348 (1445)
.+...+|++++||||+| .+|..|+++||.+.. ..+.+++.+. ..+.++.+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~ 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELVGLDE 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCCh
Confidence 13457889999999987 688889999997542 1233332221 12233344665
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEE
Q 000522 1349 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEIL 1426 (1445)
Q Consensus 1349 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~ 1426 (1445)
...+....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+. .||||+
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 34566677899999999999999999999999999999999999999999998753 4899999999999875 589999
Q ss_pred EEeCCeEeeecCCCCC
Q 000522 1427 ILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1427 Vl~~G~vvE~G~p~~~ 1442 (1445)
+|++|++++.|+|++.
T Consensus 237 vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 237 FFKDGKIIKDGDTYDI 252 (305)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998763
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=353.18 Aligned_cols=198 Identities=26% Similarity=0.403 Sum_probs=169.3
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEE
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1445)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 469999999999999999999999999999999999999999999999999864 4567889999
Q ss_pred cCCC--cccCccHHHhcCCCCC-C--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1304 PQSP--FLFEGSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1304 pQdp--~lF~gTIReNLdp~~~-~--sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
||+| .+|..|++||+..+.. . .++++.++++.+++. .........||||||||++||||++++|++
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY---------ALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc---------hhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 9998 4678899999975422 1 223455556555544 334444457999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHh-CCCcEEEEeccChhHHhh-cCEEEEEeCCeEe
Q 000522 1379 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLP 1434 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vv 1434 (1445)
|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999876 358999999999999875 8999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=363.30 Aligned_cols=218 Identities=22% Similarity=0.355 Sum_probs=183.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1300 (1445)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999964 469999999999999999999999999999999999999999999999999988776654 5679
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCCCChHHH-------HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~~sd~ei-------~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
+|+||++.+|++ |+++|+....... ..+ ........+.+.++.+|++.........||||||||++||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRD-KSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcc-cccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 9999997532110 000 0000111233444555777666777778999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999999999999999999999999987678999999999999975 899999999999999987653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=360.38 Aligned_cols=211 Identities=25% Similarity=0.392 Sum_probs=175.7
Q ss_pred EEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh---Hhhh
Q 000522 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLR 1297 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR 1297 (1445)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 369999999999999999999999999999999999999999999999999988774 5778
Q ss_pred cceEEEcCCC--ccc-CccHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000522 1298 GRFAVVPQSP--FLF-EGSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1298 ~~i~~VpQdp--~lF-~gTIReNLdp~----~~~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1369 (1445)
++++|+||+| .++ ..|+++|+... ....+++..+ .+ ..+.++.+|++ ........+||+|||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~---~~-~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARK---EA-VLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHH---HH-HHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 8999999999 344 46999998532 1111111111 00 12344445774 456677778999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEeeec
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G 1437 (1445)
||++.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999988753 799999999999988 58999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=363.21 Aligned_cols=213 Identities=25% Similarity=0.379 Sum_probs=181.4
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcceE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1445)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999963 369999999999999999999999999999999999999999999999999988776554 56899
Q ss_pred EEcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
|+||++.+|++ |+++|+..... ...++.. ..+.+.++.+|++........+||+|||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987 99999964321 1111111 123344555577766777778899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999998764 47899999999987765 899999999999999987653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=368.96 Aligned_cols=211 Identities=22% Similarity=0.340 Sum_probs=182.6
Q ss_pred cEEEEEEEEEeCCC-CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1222 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
.++++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 34699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCC--cccCccHHHhcCCCC---CCChHHH----HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1301 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKI----WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1301 ~~VpQdp--~lF~gTIReNLdp~~---~~sd~ei----~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
+|+||+| .++..|+.+||.+.. ..+++++ .++++.+ |++.........||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV---------NMLDFKTREPARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC---------CCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 9999998 467789999997431 1233332 3344444 44444455566899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+|++
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999987643 799999999999998899999999999999999865
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=365.74 Aligned_cols=213 Identities=27% Similarity=0.385 Sum_probs=181.1
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCCCChHhh
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVRDL 1296 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~~~~l 1296 (1445)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcceEEEcCCCccc-CccHHHhcCCCCC-----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1297 RGRFAVVPQSPFLF-EGSLRDNLDPFHM-----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1297 R~~i~~VpQdp~lF-~gTIReNLdp~~~-----~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
|++++|+||+|.+| ..|+++|+.+... .. ++++.++++.+++.+.+ +........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-----KDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-----hhhhcCCcccCCHHHHHHH
Confidence 99999999999755 5799999964211 01 23345555555543221 1233445568999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|+||+|||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 999999999999999999999999999999999998767899999999999986 589999999999999998864
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=380.33 Aligned_cols=201 Identities=26% Similarity=0.345 Sum_probs=172.5
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh----hcceEEEcCCCcccCc
Q 000522 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG 1312 (1445)
Q Consensus 1237 ~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~i~~VpQdp~lF~g 1312 (1445)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+...+ |++++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999998888 7899999999999985
Q ss_pred -cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCC
Q 000522 1313 -SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388 (1445)
Q Consensus 1313 -TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~l 1388 (1445)
||++|+.+... .+.++..+ ...+.++.+||+...+....+||||||||++|||||+++|+|||||||||+|
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999964321 22222211 1122333336666667777789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1389 DAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1389 D~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|+.+.+.+++.+++.. .++|+|+|||+++.+. -||||++|++|++++.|+|++.
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999998763 3899999999999865 5899999999999999998764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=354.55 Aligned_cols=202 Identities=27% Similarity=0.398 Sum_probs=174.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999953 4799999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||++.+|. .|++||+.++. ..+++++.++++..++.+. .......||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS---------AKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH---------HhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998885 69999996532 1234556666666655443 3444557999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
|+|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998754 47999999999999875 8999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=367.67 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=182.8
Q ss_pred CCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--C
Q 000522 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--T 1291 (1445)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i 1291 (1445)
+.+.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999964 4699999999999999999999999999999999999975 89999999999975 3
Q ss_pred ChHhhhcceEEEcCCCcccCccHHHhcCCCCC---C--C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhH
Q 000522 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1362 (1445)
Q Consensus 1292 ~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~---~--s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQ 1362 (1445)
+...+|++++|+||+|.+|++|+++|+.+... . + ++++.++++.+++.+.+ ....+..+.+|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-----KDRLHEPGTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHH
Confidence 45678899999999999999999999964211 1 1 22344455555443321 123455667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 79999999999999998764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=376.83 Aligned_cols=212 Identities=24% Similarity=0.355 Sum_probs=179.1
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3899999999964 469999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCCcccCc-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~-------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
||||++.+|+. |++||+.+... .+.++..+ ...+.++.+|++.........||||||||++|||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999985 99999975421 12222111 1122333335555555566789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|++|+||||||+||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+|++.
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999987653 7899999999998765 899999999999999998753
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=363.30 Aligned_cols=205 Identities=27% Similarity=0.398 Sum_probs=183.2
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcc
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1299 (1445)
.+.|+++|+++.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 4579999999852 4699999999999999999999999999999999999999999999998 3
Q ss_pred eEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1300 i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
++|+||++.+|++|+++|+.+.....+.++.++++.+++.+.+..+ +.++.+++.+.+||+|||||++||||++++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999865444445667778888888887776 77888888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHH-HHHhCCCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~-I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||||||++||+++.+.+.+. +++..+++|||+|||+++.+..||+|++|++|++++.|++++
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999888765 455556899999999999999999999999999999998764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=366.86 Aligned_cols=215 Identities=24% Similarity=0.361 Sum_probs=183.4
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CCh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~ 1293 (1445)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999953 479999999999999999999999999999999999997 579999999999864 345
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~----~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
..+|+.++|+||++.+|.+|+++|+.... ..+ ++++.++++.+++.+.+ +...+.....||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-----KDDLHKSALTLSGGQQQR 171 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-----hhhhcCCcccCCHHHHHH
Confidence 67789999999999999999999996531 111 22344455555543322 234566677899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++||||++++|++|||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++.
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988778999999999998865 899999999999999998653
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=357.86 Aligned_cols=208 Identities=26% Similarity=0.362 Sum_probs=176.7
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 4699999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EcCCCcccCc-cHHHhcCCCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+||++.+|++ |+++|+.... ..+ ++++.++++..+ ++.........||||||||++||||++.
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVG---------LLEAADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC---------CHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999998875 9999996421 111 223444444444 4433444455799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhC-C-CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSEC-K-GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|++|||||||++||+++.+.+.+.|++.. + ++|||+|+|+++.+.. ||+|++|++|++++.|+|++.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999998764 2 7899999999999876 899999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=368.99 Aligned_cols=212 Identities=28% Similarity=0.443 Sum_probs=183.8
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCeeCCCCChHhhh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDLR 1297 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~---G~I~IDG~di~~i~~~~lR 1297 (1445)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999997544469999999999999999999999999999999999999987 8999999999888877889
Q ss_pred cceEEEcCCC--cccCccHHHhcCCCC---CCChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000522 1298 GRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1298 ~~i~~VpQdp--~lF~gTIReNLdp~~---~~sd~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1368 (1445)
++++|+||+| .+++.|++||+.+.. ..++++ +.++++.+ |++...+....+||+|||||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~---------~L~~~~~~~~~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV---------GMLDYIDSEPANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC---------CChhHhcCCcccCCHHHHHHHHH
Confidence 9999999998 466789999997531 123322 33334443 55555566667899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||+++|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|+|++
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987653 789999999999998899999999999999998864
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=355.69 Aligned_cols=206 Identities=27% Similarity=0.417 Sum_probs=173.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||++.+|. .|+++|+.... ....++..+ .+.+.++.+|++.........||+|||||++||||++++|+|
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 59999996531 112222111 112233344666556666678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
++|||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998764 37999999999999876 8999999999999886
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=360.59 Aligned_cols=212 Identities=27% Similarity=0.432 Sum_probs=180.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCC--ChHhhhcce
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT--PVRDLRGRF 1300 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i--~~~~lR~~i 1300 (1445)
++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 4699999999999999999999999999999999999999999999999999764 345678899
Q ss_pred EEEcCCCcccC-ccHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1301 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1301 ~~VpQdp~lF~-gTIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
+|+||++.+|. .|+++|+.+.. ..+.++.++ ...+.++.+|++.........||+|||||++||||++++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 99999999886 59999996431 112222111 123445555777667777778999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|+|++|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++.+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 99999999999999999999999998764 47999999999999865 89999999999999998754
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=357.98 Aligned_cols=207 Identities=30% Similarity=0.354 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
++++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEcCCCcccC-ccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1301 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1301 ~~VpQdp~lF~-gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+|+||+|.+|+ .|+++|+.+... ...++.. ....+.++.+|++........+||||||||++||||++++|
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999987 699999864211 1111110 11223334445555555566689999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEe--CCeEeeecCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLPHCGCA 1439 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~--~G~vvE~G~p 1439 (1445)
++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 151 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999998763 37899999999998765 89999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=366.39 Aligned_cols=216 Identities=24% Similarity=0.381 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCCc-cc-CccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1302 VVPQSPF-LF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1302 ~VpQdp~-lF-~gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
|+||+|. +| ..|+++|+..... ...++..+ .+.+.++.+|++........+||+|||||++||||++++|
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999994 44 5589999864321 12222111 1122333335554455566789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+|++.
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999988643 7899999999999988999999999999999998753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=361.02 Aligned_cols=210 Identities=25% Similarity=0.396 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh-hhcceE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~ 1301 (1445)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999974 36999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEcCCCcccCc-cHHHhcCCCC-CC--ChHH-HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFH-MN--DDLK-IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~-~~--sd~e-i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
|+||++.+|++ |+++|+.... .. .+++ ..++++..+ +++........+||||||||++||||++++|
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~--------~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP--------VLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH--------hHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999986 9999996431 11 1111 122222221 2344455566689999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999987653 7999999999999986 899999999999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=369.69 Aligned_cols=214 Identities=29% Similarity=0.425 Sum_probs=180.5
Q ss_pred EEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCC----ChHh
Q 000522 1223 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRD 1295 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~ 1295 (1445)
++++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 3699999999999999999999999999999999999999999999999998764 3567
Q ss_pred hhcceEEEcCCC--cccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000522 1296 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1296 lR~~i~~VpQdp--~lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1369 (1445)
+|++|+|+||+| .+|+.|+++|+.+.. ..++++..+. ..+.++.+|++. ........||||||||++||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 889999999998 678899999996421 1223322211 223344446753 45666778999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||++++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+|++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999998764 47899999999998865 89999999999999998765
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=355.84 Aligned_cols=201 Identities=30% Similarity=0.387 Sum_probs=171.1
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh---Hhhhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1299 (1445)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987754 357889
Q ss_pred eEEEcCCCcccCc-cHHHhcCCCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
++++||+|.+|++ |+++|+.... ..+. +++.++++.+ |++........+||+|||||++||||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~lara 150 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV---------GLSHKHRALPAELSGGEQQRVAIARA 150 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CCHHHhhCChhhcCHHHHHHHHHHHH
Confidence 9999999999985 9999996431 1121 2233444444 55444445556899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeE
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~v 1433 (1445)
++++|+|+||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998763 58999999999999986 899999999975
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=365.71 Aligned_cols=213 Identities=28% Similarity=0.390 Sum_probs=178.9
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1445)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 469999999999999999999999999999999999997 479999999999864 3455
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCCC---CCh-----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---NDD-----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~~---~sd-----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|+.++|+||++.+|++|+++|+.+... ..+ +++.++++.++++... ....+....+||+|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-----KDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-----HHHhccChhhCCHHHHHHH
Confidence 67889999999999999999999975311 111 2233444444432110 1223455668999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999987678999999999999876 89999999999999998754
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=370.83 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=180.7
Q ss_pred CccEEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCC----C-
Q 000522 1220 QGLIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----T- 1291 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i- 1291 (1445)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999996432 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHhhhcceEEEcCCC--cccCccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHH
Q 000522 1292 PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1292 ~~~~lR~~i~~VpQdp--~lF~gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQr 1365 (1445)
+...+|++++|+||+| .+|..|+++|+.+... ...++..+. +.+.++.+|++ ...+.....||+|||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 4567888999999998 4678899999964321 222222211 12333344663 34566677899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998764 37999999999998764 89999999999999998764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=341.01 Aligned_cols=172 Identities=35% Similarity=0.591 Sum_probs=162.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+....++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+.+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
++|+|.+|++|+++|+ ||+|||||++||||++++|++||||
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~~lllD 121 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------LSGGQRQRLGLARALYGNPRILVLD 121 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999998 9999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhcCEEEEEeCCeE
Q 000522 1383 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHL 1433 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~v 1433 (1445)
|||++||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 122 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999998764 48899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=352.40 Aligned_cols=201 Identities=25% Similarity=0.398 Sum_probs=171.4
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|++|+|.. +++|+|+||++++|++++|+||||||||||||+|.|.++|.+|+|.++|
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 3678999999963 3459999999999999999999999999999999999999999999998
Q ss_pred -eEEEEcCCCCCCCc-cHHHHHhcCCC-C----------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 673 -SIAYVPQVPWILSG-TIRDNILFGKN-Y----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~-~----------~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
.+||+||++....+ ||+|-+.+|+- + |++...++++.+++.+-. ...-..||||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGer 144 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGER 144 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHH
Confidence 69999999876544 99999999852 1 233455667777776432 234568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchh-hhhCCEEEEEeCCEEEEecCHh
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~~d~i~~l~~G~i~~~g~~~ 818 (1445)
|||.|||||+++|+|++||||||+||....-.+++.+..-...+|+|+|+|+|+++. +.+||++++|++|+++.+|+++
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ 224 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE 224 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcc
Confidence 999999999999999999999999999999999987433223457899999999987 4569999999999999999998
Q ss_pred HHHh
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~~~~ 822 (1445)
|++.
T Consensus 225 evlT 228 (258)
T COG1120 225 EVLT 228 (258)
T ss_pred hhcC
Confidence 8764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=361.66 Aligned_cols=216 Identities=22% Similarity=0.335 Sum_probs=181.4
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC-------
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP------- 1292 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~------- 1292 (1445)
++.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++....
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 46999999999999999999999999999999999999999999999999986421
Q ss_pred ------hHhhhcceEEEcCCCcccCc-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhh-hcCCCCCCh
Q 000522 1293 ------VRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSV 1360 (1445)
Q Consensus 1293 ------~~~lR~~i~~VpQdp~lF~g-TIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLdt~v-~e~G~~LSg 1360 (1445)
...+|++++|+||++.+|++ |++||+.... ...+.+.. ..+.+.++.+|++... +.....||+
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHcCCChhhhhCCcccCCH
Confidence 34678899999999999985 9999996421 11111111 1123344445665543 556678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecC
Q 000522 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~ 1438 (1445)
|||||++|||||+++|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998764 48999999999999986 89999999999999998
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
+++.
T Consensus 236 ~~~~ 239 (257)
T PRK10619 236 PEQL 239 (257)
T ss_pred HHHh
Confidence 7653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=364.43 Aligned_cols=214 Identities=28% Similarity=0.391 Sum_probs=179.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcC---CCC--CCcEEEECCeeCCCC--ChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPI--CGGQILVDGLNIINT--PVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl---~~~--~~G~I~IDG~di~~i--~~~ 1294 (1445)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 4699999999999999999999999999999999997 454 589999999999764 346
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCC---CC-C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~---~~-s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++|+||+|.+|.+|+++|+.+.. .. . +++++++++.+++.+.+ +......+.+||||||||+
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-----KDKLKESAFALSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-----hhhhhCCcccCCHHHHHHH
Confidence 7788999999999999999999996421 11 1 12334444444432211 2345566778999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+|++.
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999987778999999999999865 899999999999999988653
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=363.66 Aligned_cols=214 Identities=29% Similarity=0.427 Sum_probs=180.9
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CCh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1293 (1445)
|.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999964 3699999999999999999999999999999999999863 69999999999875 455
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~~----~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
..+|++++|+||+|.+|+.|+++|+..... .+ ++++.++++.+++.+. +....+....+||+|||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE-----VKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-----hHHHHhcCCCCCCHHHHHH
Confidence 678999999999999999999999964321 11 2234444445444322 1233455667899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++||||++.+|++|+|||||++||+.+.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999887668999999999998866 89999999999999998754
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=361.53 Aligned_cols=213 Identities=26% Similarity=0.367 Sum_probs=180.4
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC--------h
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--------V 1293 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--------~ 1293 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 36999999999999999999999999999999999999999999999999987542 3
Q ss_pred HhhhcceEEEcCCCcccC-ccHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~-gTIReNLdp~----~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1368 (1445)
..+|++++|+||+|.+|+ .|++||+... .....++..+ ...+.++.+|++........+||||||||++|
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence 567889999999999886 5999999642 1112211111 12334455577666666777899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|||++.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|++++
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999998764 48899999999999876 89999999999999998764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=321.43 Aligned_cols=205 Identities=24% Similarity=0.395 Sum_probs=177.5
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|.+++|.++|... + -..+++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~-~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL-P---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc-e---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5678999999642 2 367899999999999999999999999999999999999999999999888774 567999
Q ss_pred EcCCCcccCc-cHHHhcCCCC----CC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFH----MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~----~~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+.||.-||.- ||++|+..+- +. ..+.+..++.++|+.++.+.+ ...||||||||++|||+|+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RL---------P~~LSGGqRQRvALARclvR 146 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRL---------PGELSGGQRQRVALARCLVR 146 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhC---------ccccCchHHHHHHHHHHHhc
Confidence 9999999986 9999987542 22 335677888888887765543 44799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++++|||++.|+-++.
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHH
Confidence 999999999999999999999988887654 58899999999998765 799999999999999986654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=378.13 Aligned_cols=214 Identities=25% Similarity=0.383 Sum_probs=182.9
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCeeCCCCChHhhh
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--GQILVDGLNIINTPVRDLR 1297 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~--G~I~IDG~di~~i~~~~lR 1297 (1445)
.|.|+++||+++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+.. +
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 478999999999964 369999999999999999999999999999999999999999 9999999999877653 6
Q ss_pred cceEEEcCCCcccCc-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1298 GRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~g-TIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
+++++|+|++.+|+. |+++|+.+.- ..+++++.+. ..+.++.+||+........+||||||||++|||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~-----v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER-----VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 789999999999987 9999997532 1233332221 223344446666666677789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhCC---CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK---GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~---~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|++.
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999987543 7899999999998765 899999999999999998754
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=361.82 Aligned_cols=213 Identities=29% Similarity=0.449 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC----------
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---------- 1292 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---------- 1292 (1445)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 46999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHhhhcceEEEcCCCcccC-ccHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000522 1293 ---VRDLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1445)
Q Consensus 1293 ---~~~lR~~i~~VpQdp~lF~-gTIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1364 (1445)
...+|++++++||++.+|. .|+++|+.... ....++..+ .+.+.++.+|++.........||+||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 2467889999999999886 69999996421 112111111 1234444456666666777789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.+ ||++++|++|++++.|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999865 89999999999999998765
Q ss_pred C
Q 000522 1442 P 1442 (1445)
Q Consensus 1442 ~ 1442 (1445)
.
T Consensus 234 ~ 234 (252)
T TIGR03005 234 I 234 (252)
T ss_pred H
Confidence 3
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=365.75 Aligned_cols=213 Identities=27% Similarity=0.423 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC-hHhhhcceE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLRGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR~~i~ 1301 (1445)
++++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999633 46999999999999999999999999999999999999999999999999998765 467788999
Q ss_pred EEcCCCc--ccCccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1302 VVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1302 ~VpQdp~--lF~gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
|+||+|. +++.|+++|+.+... .+.++..+. +.+.++.+|++.........||+|||||++||||++.+|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999985 567899999975421 122221111 122333346655566667789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||||||++||+.+...+.+.+++.. +++|||++||+++.+..||+|++|++|++++.|++++
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999998754 4899999999999998999999999999999998765
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=365.41 Aligned_cols=215 Identities=24% Similarity=0.363 Sum_probs=180.5
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--Ch
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~ 1293 (1445)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 36999999999963 4699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
..+|+.++|+||++.+|+.|+++|+.+.. ..+. +++.++++.+++.+.+ +.........||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-----SDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-----hhhhcCChhhCCHHHHHHH
Confidence 56788999999999999999999996421 1222 2234455554442211 2334455668999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||+++|+||+|||||++||.++.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+|++.
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987668999999999999866 899999999999999998653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.17 Aligned_cols=213 Identities=23% Similarity=0.371 Sum_probs=179.4
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCcEEEECCeeCCCC--ChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--PVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~i--~~~ 1294 (1445)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 5899999999964 369999999999999999999999999999999999954 6 499999999998653 345
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCC----CCCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPF----HMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|+.++|+||+|.+|+.|++||+.+. +... ++++.++++.+++.+.+ ....+....+||+|||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-----KDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-----HHHHhcCcccCCHHHHHHH
Confidence 678899999999999999999998642 1111 22344455555443221 2345566678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|++|||||||++||.++.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999987667999999999998865 89999999999999998765
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=358.25 Aligned_cols=204 Identities=27% Similarity=0.362 Sum_probs=175.6
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999964 46999999999999999999999999999999999999999999999998763 567899
Q ss_pred EEEcCCCcccC-ccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1301 AVVPQSPFLFE-GSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1301 ~~VpQdp~lF~-gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+|+||+|.+|+ .|++||+.+... ..++++.++++.. |++........+||||||||++|||||+++|++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~---------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV---------GLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc---------CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 599999975321 1233444444444 555555566678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAA 1440 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~ 1440 (1445)
|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+..
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999998763 37999999999998865 8999999999999988754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=362.43 Aligned_cols=216 Identities=23% Similarity=0.370 Sum_probs=180.5
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCcEEEECCeeCCCC--C
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--P 1292 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~i--~ 1292 (1445)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999963 469999999999999999999999999999999999986 4 689999999999754 3
Q ss_pred hHhhhcceEEEcCCCcccC-ccHHHhcCCC----CCCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHH
Q 000522 1293 VRDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1363 (1445)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lF~-gTIReNLdp~----~~~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQr 1363 (1445)
...+|++++|+||++.+|. .|+++|+... +..+. +++.++++.+++.+.+ +...+....+||+|||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-----KDRLKSNAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcCcCCHHHH
Confidence 4567899999999999998 5999999642 11121 2233444444433221 1234456678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||++||||++++|++|||||||++||..+.+.+.+.|++..++.|||++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999999865 899999999999999988653
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=366.03 Aligned_cols=213 Identities=27% Similarity=0.431 Sum_probs=179.1
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1445)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 6999999999963 469999999999999999999999999999999999875 689999999999865 3445
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~----~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++|+||++.+|++|+++|+.... ... ++.+.++++.+++.+. +....+....+||||||||+
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-----VKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-----hHHHHhcCcccCCHHHHHHH
Confidence 6788999999999999999999986421 111 1233444444443211 12334566678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|+||||||||++||..+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999987667899999999998765 89999999999999998754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=358.36 Aligned_cols=213 Identities=24% Similarity=0.365 Sum_probs=180.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCC------CChHhh
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN------TPVRDL 1296 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~------i~~~~l 1296 (1445)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 469999999999999999999999999999999999999999999999998741 234567
Q ss_pred hcceEEEcCCCcccCc-cHHHhcCCC--C--CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1297 RGRFAVVPQSPFLFEG-SLRDNLDPF--H--MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1297 R~~i~~VpQdp~lF~g-TIReNLdp~--~--~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
|++++|+||+|.+|.+ |++||+..+ . ....++.. ..+.+.++.+|++...+....+||||||||++||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 8899999999999976 999999631 1 11222211 123344555577766777777899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++++|+|+||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++++.|++++.
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999998764 48999999999999875 899999999999999987654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=332.47 Aligned_cols=204 Identities=25% Similarity=0.342 Sum_probs=173.2
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCC-----eEEEEcC-----
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-----GSIHASG----- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~-----G~i~~~~----- 672 (1445)
...++++|.++.|.. +.+|+|||++|+++++++++|||||||||||+++.+..+..+ |+|.++|
T Consensus 5 ~~~~~~~~l~~yYg~------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGD------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECc------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 356889999998863 335999999999999999999999999999999999887765 8998877
Q ss_pred ----------eEEEEcCCCCCCCccHHHHHhcCCCCC-------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 673 ----------SIAYVPQVPWILSGTIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 673 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
+||+|+|.|.-|+.||+|||.+|.... ++..++.++.++|-+... ....+.+..||
T Consensus 79 ~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-------DrL~~sa~~LS 151 (253)
T COG1117 79 PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-------DRLHKSALGLS 151 (253)
T ss_pred CCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-------HHhhCCccCCC
Confidence 599999999999999999999985422 234666677777765443 23467788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
|||+||++||||+.-+|+|+|||||||||||.+..+|-+. +.. +.++-|+|+|||+++...+ +|+...+-+|+++|.
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeL-i~e-Lk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEEL-ITE-LKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHH-HHH-HHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999988888775 433 4556699999999998766 999999999999999
Q ss_pred cCHhHHH
Q 000522 815 GSSADLA 821 (1445)
Q Consensus 815 g~~~~~~ 821 (1445)
|+.+++-
T Consensus 230 g~T~~iF 236 (253)
T COG1117 230 GPTDKIF 236 (253)
T ss_pred cCHHhhh
Confidence 9988874
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=374.95 Aligned_cols=215 Identities=24% Similarity=0.383 Sum_probs=179.5
Q ss_pred cEEEEEEEEEeCCC-----------CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCC
Q 000522 1222 LIEFQNVTMRYKPS-----------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1290 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~-----------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~ 1290 (1445)
.++++|++++|+.. ...+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHh---hhcceEEEcCCC--cccC-ccHHHhcCC----CC-CCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCC
Q 000522 1291 TPVRD---LRGRFAVVPQSP--FLFE-GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISF 1358 (1445)
Q Consensus 1291 i~~~~---lR~~i~~VpQdp--~lF~-gTIReNLdp----~~-~~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~L 1358 (1445)
++.+. +|++++||+|+| .+++ .||++|+.. +. ..+.++..+. ..+.++.+|++ .........|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCChHHhcCCcccC
Confidence 87554 678999999999 4774 699999852 11 1233332221 12333444663 2345666789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEee
Q 000522 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPH 1435 (1445)
Q Consensus 1359 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE 1435 (1445)
|||||||++|||||+.+|++||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999986 89999999999999
Q ss_pred ecCCCC
Q 000522 1436 CGCAAA 1441 (1445)
Q Consensus 1436 ~G~p~~ 1441 (1445)
.|++++
T Consensus 243 ~g~~~~ 248 (331)
T PRK15079 243 LGTYDE 248 (331)
T ss_pred EcCHHH
Confidence 998754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=359.73 Aligned_cols=213 Identities=26% Similarity=0.404 Sum_probs=182.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh-hhcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1300 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999964 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCCC----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHMN----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~~----sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
+++||++.+|.+ |++||+...... +.++. +....+.++.+|++.........||+|||||++||||++++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 999999998885 999999754211 11111 11233455555777766777778999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+|++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 99999999999999999999999887753 48999999999987755 89999999999999998864
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=364.68 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=177.9
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCCCC--hHh
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTP--VRD 1295 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i~--~~~ 1295 (1445)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred hhcceEEEcCCCcccCccHHHhcCCCC---CC------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MN------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1296 lR~~i~~VpQdp~lF~gTIReNLdp~~---~~------sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
+|++++|+||++.+|++|+++|+.+.. .. .++++.++++..++.+.+ .+.++..+.+||+|||||+
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-----GDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-----hhHhhcChhhCCHHHHHHH
Confidence 788999999999999999999986431 11 112333444444432211 1244556678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999987678999999999999875 89999999999999998764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=378.36 Aligned_cols=209 Identities=27% Similarity=0.406 Sum_probs=183.6
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++...+|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-cCccHHHhcCCCCC-----C------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000522 1302 VVPQSPFL-FEGSLRDNLDPFHM-----N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1302 ~VpQdp~l-F~gTIReNLdp~~~-----~------sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1369 (1445)
++||++.+ |+.|+++|+.+... . +++++.++++.+++.+. ......+||||||||++||
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~---------~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF---------ADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh---------hcCChhhCCHHHHHHHHHH
Confidence 99999987 57799999965321 1 12345566666655443 3344557999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|||+++|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++.+. -||||++|++|++++.|+|++
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999998764 4889999999999995 589999999999999999875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=365.43 Aligned_cols=211 Identities=27% Similarity=0.408 Sum_probs=181.1
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999633 35999999999999999999999999999999999999999999999999998878888899999
Q ss_pred EEcCCC--cccCccHHHhcCCCC---CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1302 VVPQSP--FLFEGSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1302 ~VpQdp--~lF~gTIReNLdp~~---~~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
|+||+| .+|+.|+++|+.... ..+.+ ++.++++.+ |+..........||+|||||++|||||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML---------GLEELRDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC---------CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 999998 477889999996422 12222 233444444 444444555668999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+.+|++|||||||++||+.+.+.+.+.+++..+ ++|||++||+++.+. .||||++|++|++++.|+|++.
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999987643 799999999999985 5899999999999999998764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=361.97 Aligned_cols=214 Identities=28% Similarity=0.392 Sum_probs=181.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--ChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1294 (1445)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 4699999999999999999999999999999999999975 799999999999754 345
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCCC---C-C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~~---~-s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++|+||++.+|+.|+++|+.+... . + ++++.++++.+++.+.+ ....+.....||+|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-----KDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999974321 1 1 12344555555543221 2234556678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||||++++|+||||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|++++.
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999987767999999999999876 899999999999999987653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=367.54 Aligned_cols=209 Identities=26% Similarity=0.379 Sum_probs=184.0
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..|+++||+.+|+ ...+++|+||+|++||.+.+.|||||||||++++|.||..|++|+|.+||.|+.++|++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999998 45799999999999999999999999999999999999999999999999999999986 6799
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC----CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM----NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~----~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
++|+|+..||+- ||++|+.++-+ ..++ ++.++|+.++|.++ -......|||||+||++||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~---------~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGF---------ADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhh---------hhhChhhhChHHHHHHHHHHH
Confidence 999999999986 99999987533 2333 45666666665543 344566899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|..+|++|+||||-|+||.+-...+|.-+++.. .|.|.|.|||+-+... -+|||+||++|+|...|+|+|.
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999999999999999999988887653 3899999999988655 5799999999999999999875
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=363.66 Aligned_cols=216 Identities=24% Similarity=0.346 Sum_probs=182.2
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CC
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1292 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~ 1292 (1445)
.-.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 346999999999964 369999999999999999999999999999999999997 699999999999853 45
Q ss_pred hHhhhcceEEEcCCCcccCccHHHhcCCCC---CCChH-----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000522 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDL-----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1445)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lF~gTIReNLdp~~---~~sd~-----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1364 (1445)
...+|++++|+||+|.+|.+|+++|+.+.. ..+++ .+.++++..++.+ ++....+..+..|||||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-----ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-----hHHHHHhcCcccCCHHHHH
Confidence 567889999999999999999999997421 12221 2233344333321 2334456667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999887778999999999999875 899999999999999988653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=363.06 Aligned_cols=213 Identities=24% Similarity=0.374 Sum_probs=179.6
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~--i~~~ 1294 (1445)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999964 369999999999999999999999999999999999997 3 58999999999864 4556
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCCC----CChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~~----~sd~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++|+||+|.+|++|+++|+.+... .++++ +.++++..++.+.+ .........+||+|||||+
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-----KDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhhhhCCcccCCHHHHHHH
Confidence 78899999999999999999999964321 12222 33334444433221 2334566678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|+||+|||||++||.++...+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|+|++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999987678999999999999875 89999999999999999765
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=358.36 Aligned_cols=214 Identities=24% Similarity=0.385 Sum_probs=178.4
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh-hhcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1300 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
+|+||++.+|++ |+++|+..... .+.++..+.+ .+.++.+ +++.........||+|||||++||||++++|+
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999999985 99999965321 1222222111 1222222 23333344556899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||||++|++|++++.|+|++.
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 999999999999999999999998764 48999999999997654 899999999999999998754
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=364.26 Aligned_cols=217 Identities=27% Similarity=0.372 Sum_probs=183.8
Q ss_pred CCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--C
Q 000522 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--T 1291 (1445)
Q Consensus 1219 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i 1291 (1445)
..+.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .
T Consensus 22 ~~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3457999999999964 3699999999999999999999999999999999999984 89999999999875 3
Q ss_pred ChHhhhcceEEEcCCCcccCccHHHhcCCCC---C-CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHH
Q 000522 1292 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1363 (1445)
Q Consensus 1292 ~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~---~-~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQr 1363 (1445)
+...+|++++|+||++.+|++|+++|+.+.. . .. ++++.++++.+++.+.+ .+..+..+.+||+|||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-----KDRLHENAFGLSGGQQ 174 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-----HHHhhCCcccCCHHHH
Confidence 4567899999999999999999999996431 1 11 12344555555543322 1345566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||++||||++++|+|+||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999987678999999999999865 899999999999999987653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=360.96 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCeeCCCC--ChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~i--~~~ 1294 (1445)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999963 46999999999999999999999999999999999999987 69999999998653 456
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~~----~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++|+||+|.+|++|++||+.+... .. ++.+.++++..++++.+ ....+..+.+||+|||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-----KDNLHKSGLALSGGQQQRL 156 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-----hhHhhCCcccCCHHHHHHH
Confidence 78899999999999999999999975321 11 12233444445544322 2335566778999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||||++++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999887668999999999999887 699999999999999988653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=353.57 Aligned_cols=204 Identities=26% Similarity=0.418 Sum_probs=173.1
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999963 469999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||++.+|++ |++||+..... .+..+.. ..+.+.++.+|++........+||+|||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999986 99999864321 1111111 1223444455776666666778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
+||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999998764 47899999999999875 8999999999999865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=351.20 Aligned_cols=208 Identities=25% Similarity=0.380 Sum_probs=183.0
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh----Hhhhcc
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRGR 1299 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~----~~lR~~ 1299 (1445)
.+.|+.++|+++ .++++|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999755 569999999999999999999999999999999999999999999999999876542 345678
Q ss_pred eEEEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1300 i~~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
++|+||+|.+|+.|+++|+......++++.+++++.+++.+.++.+ |+++.++....+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999875555566678888888888877765 78888888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHH--HHHHhC-CCcEEEEeccChhHHhhcCEEEEEeCCe
Q 000522 1378 VLCLDECTANVDAQTASILQN--AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1432 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~--~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1432 (1445)
||||||||++||..+.+.+.+ .++... .+.|+|++||+++.+..||+|++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999887776 444332 3789999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=375.26 Aligned_cols=213 Identities=25% Similarity=0.410 Sum_probs=180.5
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..++++|++++|.. .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 4699999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
++|+|++.+|+. |++||+.+.-. .++.++.+. +.+.++.+|++.........||||||||++|||||+++|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR-----VMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHH-----HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999975321 222222111 122233335555556666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|++.
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999988653 7999999999998764 899999999999999998653
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=378.20 Aligned_cols=212 Identities=27% Similarity=0.377 Sum_probs=178.6
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
||||++.+|+. |+++|+.+... .+.++..+ ...+.++.+|++........+||||||||++|||||+++|+
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999975 99999975321 22222111 12233333455555555666899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999987643 7899999999998765 899999999999999998653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=363.84 Aligned_cols=209 Identities=26% Similarity=0.356 Sum_probs=180.4
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 36999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCCcccCc-cHHHhcCCCCC--------C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~--------~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1369 (1445)
|+||++.++.+ |+++|+..... . .++++.++++.+++. ........+||||||||++||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK---------PLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH---------HHhcCCcccCCHHHHHHHHHH
Confidence 99999877665 99999964311 0 122345555555543 333444557999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||++.+|+||||||||++||..+.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|++++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999998764 37999999999999864 89999999999999998765
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=350.99 Aligned_cols=206 Identities=27% Similarity=0.382 Sum_probs=172.3
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh---hhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR~~ 1299 (1445)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999532 46999999999999999999999999999999999999999999999999998876543 6889
Q ss_pred eEEEcCCCccc-CccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1300 FAVVPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1300 i~~VpQdp~lF-~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
++|+||+|.+| ..|+++|+.... ..++++..+. ..+.++.+|++........+||+|||||++||||++++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999999875 569999997531 1222222211 12223333555445556678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEe
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLP 1434 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vv 1434 (1445)
|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999998763 47899999999999986 7999999999985
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=349.83 Aligned_cols=200 Identities=24% Similarity=0.380 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EcCCCcccCc-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~-------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+||+|.+|++ |++||+.+... .+++++.++++.++ ++........+||+|||||++||||+++
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVG---------LAGLEKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcC---------CHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 99999974321 11234445555554 4444444556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
+|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999998764 37999999999999976 8999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=347.42 Aligned_cols=204 Identities=52% Similarity=0.902 Sum_probs=181.7
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcCeEEEEcCCCCCCC
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~p~l~~ 685 (1445)
++++|+++.|..... +..++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence 357899999864210 0023699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcC
Q 000522 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 765 (1445)
Q Consensus 686 ~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD 765 (1445)
.|++||+.++..+++++..++.+.+++...+..+|.|.+|.+++.+.+||||||||++||||++.+|++++|||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999987777677788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCE
Q 000522 766 AQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1445)
Q Consensus 766 ~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~ 810 (1445)
++..+.+++.++.....+++|+|++||+.+.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999888887544322234689999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=361.49 Aligned_cols=209 Identities=24% Similarity=0.379 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EcCCCcccCc-cHHHhcCCCCC--------CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHM--------ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1370 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~--------~s---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1370 (1445)
+||++.+|.+ |+++|+++... .. ++++.++++.+ |++.........||||||||++|||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT---------RINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc---------CCHHHHcCCcccCCHHHHHHHHHHH
Confidence 9999998877 99999975311 01 12233334433 5554455566789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++++.|++++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999999999999999999999999998764 48999999999999875 899999999999999987653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=366.08 Aligned_cols=215 Identities=27% Similarity=0.447 Sum_probs=179.9
Q ss_pred cEEEEEEEEEeCCCC---CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCC----ChH
Q 000522 1222 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~ 1294 (1445)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 4699999999999999999999999999999999999999999999999998653 345
Q ss_pred hhhcceEEEcCCC--cccCccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000522 1295 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp--~lF~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~L 1368 (1445)
..|++++|+||+| .+|..|+++|+.+.. ..+.++..+ ...+.++.+|++. .......+||+|||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 6788999999998 577889999996321 122222211 1223444457753 4456677899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||+++|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+. -||+|++|++|++++.|+|++
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999998764 4789999999999886 589999999999999999875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=362.18 Aligned_cols=213 Identities=26% Similarity=0.419 Sum_probs=180.3
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--ChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1294 (1445)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~----~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++++||+|.+|+.|+++|+.... ... ++++.++++..++.+.+ +...+....+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-----KSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-----HHHHhCChhhcCHHHHHHH
Confidence 6788999999999999999999997421 111 12244445554443221 2334566678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999987778999999999998765 89999999999999998864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=362.54 Aligned_cols=202 Identities=32% Similarity=0.418 Sum_probs=174.5
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------e
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1445)
.++++|++..|.+. . +++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~i~l~~v~K~yg~~-----~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRKSFGSF-----E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred EEEEeeeEEEcCCc-----e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCC
Confidence 57899999998632 1 59999999999999999999999999999999999999999999987 5
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCCCC-------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
||+|+|+.-|++- ||+|||.||.... +++.+++.+..++++.++..| ..||||||||||||
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAla 145 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALA 145 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHH
Confidence 9999999999865 9999999986542 467788888888887776554 58999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHHHhc
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
||+.++|+++|||||+|+||++....+-..+..-....+.|+|.||||..+.. .||+|++|++|+|.+.|++.|+...
T Consensus 146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999998887766532211223679999999987754 5999999999999999999999754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=352.89 Aligned_cols=200 Identities=29% Similarity=0.399 Sum_probs=170.3
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hhhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1299 (1445)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 4699999999999999999999999999999999999999999999999999887643 46789
Q ss_pred eEEEcCCCcccC-ccHHHhcCCCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1300 FAVVPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1300 i~~VpQdp~lF~-gTIReNLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
++|+||+|.+|. .|+++|+.... ... +++++++++..++ +........+||||||||++||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGL---------EHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---------hhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999986 59999986431 111 2334445555444 333344445799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCe
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1432 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1432 (1445)
|+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999998864 48999999999999986 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=365.35 Aligned_cols=213 Identities=27% Similarity=0.340 Sum_probs=178.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hhhc
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRG 1298 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~ 1298 (1445)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999876643 3578
Q ss_pred ceEEEcCCCcccCc-cHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1299 RFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~g-TIReNLdp~----~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
+++|+||++.+|++ |+++|+.+. ...+.++..+ ...+.++.+|++........+||||||||++||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 89999999999987 999998642 1112111111 1222333446655555556689999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998764 37999999999998876 89999999999999998764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=364.81 Aligned_cols=212 Identities=25% Similarity=0.390 Sum_probs=181.1
Q ss_pred cEEEEEEEEEeCCC----CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC-hHhh
Q 000522 1222 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDL 1296 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~l 1296 (1445)
.++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999743 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcceEEEcCCCc--ccCccHHHhcCCCCC---CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000522 1297 RGRFAVVPQSPF--LFEGSLRDNLDPFHM---ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1297 R~~i~~VpQdp~--lF~gTIReNLdp~~~---~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1367 (1445)
|++++|+||+|. +|..|+++|+.+... .+ ++++.++++.+ |++.........||+|||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------gL~~~~~~~~~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV---------GMYEYRRHAPHLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC---------CCHhHhhCCcccCCHHHHHHHH
Confidence 899999999984 676789999965321 12 22344444444 4444455556689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||++++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..||+|++|++|++++.|+|++.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999998764 38999999999999988999999999999999998663
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=354.01 Aligned_cols=206 Identities=24% Similarity=0.313 Sum_probs=174.7
Q ss_pred cEEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh---h
Q 000522 1222 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1296 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---l 1296 (1445)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999997532 35999999999999999999999999999999999999999999999999998877654 2
Q ss_pred -hcceEEEcCCCcccCc-cHHHhcCCC---CCCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000522 1297 -RGRFAVVPQSPFLFEG-SLRDNLDPF---HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1297 -R~~i~~VpQdp~lF~g-TIReNLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1367 (1445)
+++++++||+|.+|++ |+++|+.+. ..... +++.++++.. |++.........||+|||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL---------GLGKRLDHLPAQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc---------CCHhHhhCChhhCCHHHHHHHH
Confidence 3679999999999885 999998642 11111 2333344444 5544444555689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeEeee
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPHC 1436 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~ 1436 (1445)
|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999998763 37899999999999999999999999999874
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=344.53 Aligned_cols=200 Identities=30% Similarity=0.466 Sum_probs=169.4
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------e
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------S 673 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------~ 673 (1445)
..|+++|++|.|... + +|+||||++++|++++|+||||||||||+|+|+|.++|.+|+|.+.| .
T Consensus 3 ~~i~v~nl~v~y~~~---~---vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR---P---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred cEEEEeeeEEEECCE---e---eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCe
Confidence 368999999999642 2 59999999999999999999999999999999999999999999865 5
Q ss_pred EEEEcCCC---CCCCccHHHHHhcCCCC-----------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 674 IAYVPQVP---WILSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 674 i~y~~Q~p---~l~~~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
||||||.. |-|+.||+|-+..|... |.+..+++++..++. |+. ......|||||+
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~----------~r~i~~LSGGQ~ 145 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLR----------DRQIGELSGGQK 145 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhh----------CCcccccCcHHH
Confidence 99999954 77899999999987432 346777888888876 332 234457999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHh
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~ 818 (1445)
|||-|||||.++||+|+|||||+|+|+.++..+++- +.....+|+||++||||++.+.. +|+|+.|+ +++...|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 999999999999999999999999999999988875 33323348999999999998765 99999995 5778899988
Q ss_pred HHHh
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~~~~ 822 (1445)
+...
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=368.65 Aligned_cols=213 Identities=28% Similarity=0.349 Sum_probs=178.9
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 4699999999999999999999999999999999999999999999999998754 356789999
Q ss_pred EEcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1302 VVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
|+||++.++. .|+++|+..+. ..++.+..+.+ .+.++.+|++.........||||||||++|||||+++|+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 59999996321 12322222211 122333355544455556799999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+|++.
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999998763 48899999999999875 899999999999999998654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=368.55 Aligned_cols=215 Identities=25% Similarity=0.378 Sum_probs=176.7
Q ss_pred cEEEEEEEEEeCCC--------CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh
Q 000522 1222 LIEFQNVTMRYKPS--------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~--------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~ 1293 (1445)
.|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2469999999999999999999999999999999999999999999999999988875
Q ss_pred H---hhhcceEEEcCCCc--ccCc-cHHHhcCC----CCCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhH
Q 000522 1294 R---DLRGRFAVVPQSPF--LFEG-SLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQ 1362 (1445)
Q Consensus 1294 ~---~lR~~i~~VpQdp~--lF~g-TIReNLdp----~~~~sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQ 1362 (1445)
. .+|+++++|||||. |++. |+.+|+.. .......+.. ....+.++.+|++. ........|||||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 4 56789999999994 5553 88888742 1111221111 11223334445542 3455567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p 1439 (1445)
|||++|||||+.+|+|||+||||++||..+.+.|.+.|++.. .+.|+|+|||+++.+.. ||+|+||++|+|+|.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998764 38999999999999975 899999999999999986
Q ss_pred CC
Q 000522 1440 AA 1441 (1445)
Q Consensus 1440 ~~ 1441 (1445)
++
T Consensus 240 ~~ 241 (327)
T PRK11308 240 EQ 241 (327)
T ss_pred HH
Confidence 54
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=368.44 Aligned_cols=212 Identities=26% Similarity=0.364 Sum_probs=183.2
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|++ ..+|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred EcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||+|.+|++ |++|||.+... ...++..+ ...+.++.+|++........+||+|||||++|||||+++|++
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999987 99999964321 12222111 123344445777666667778999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|+|||||++||+.+.+.+++.|++..+++|||++||+++.+.+ ||||++|++|++++.|++++.
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999988778999999999998876 899999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=361.97 Aligned_cols=219 Identities=22% Similarity=0.324 Sum_probs=187.0
Q ss_pred CCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCC--
Q 000522 1217 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-- 1289 (1445)
Q Consensus 1217 wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~-- 1289 (1445)
-|..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred cCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 456788999999999964 3699999999999999999999999999999999999975 7999999998874
Q ss_pred --CCChHhhhcceEEEcCCCcccCccHHHhcCCCC---C-----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCC
Q 000522 1290 --NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1359 (1445)
Q Consensus 1290 --~i~~~~lR~~i~~VpQdp~lF~gTIReNLdp~~---~-----~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS 1359 (1445)
......+|++++|+||+|.+|.+|+++|+.... . ..++++.++++.+++.+ ++....+.....||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS 163 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-----EVKDRLGDLAFNLS 163 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-----hhhHHHhCCcccCC
Confidence 334567889999999999999999999996431 1 11345666666666543 22344556667899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecC
Q 000522 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1360 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~ 1438 (1445)
+|||||++||||++++|+++||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987667999999999999975 89999999999999998
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
+++.
T Consensus 244 ~~~~ 247 (265)
T PRK14252 244 TDTI 247 (265)
T ss_pred HHHH
Confidence 7543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=319.57 Aligned_cols=199 Identities=29% Similarity=0.391 Sum_probs=171.2
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------eE
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 674 (1445)
+.++++.|+|... + -..+++|++||+++|+|||||||||||++|.|+..|.+|+|.++| .+
T Consensus 2 l~L~~V~~~y~~~---~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 2 LALDDVRFSYGHL---P-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred ccccceEEeeCcc---e-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 3467788888532 2 246799999999999999999999999999999999999999987 49
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC-------CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000522 675 AYVPQVPWILSG-TIRDNILFGKN-------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1445)
Q Consensus 675 ~y~~Q~p~l~~~-ti~~nI~~g~~-------~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lAR 746 (1445)
++++|+..||.- ||++||-+|.. .+.++.+.+....+|....+.+|. +|||||||||||||
T Consensus 74 SmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALAR 142 (231)
T COG3840 74 SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALAR 142 (231)
T ss_pred hhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHH
Confidence 999999999976 99999999853 245678888888999988888885 89999999999999
Q ss_pred HHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHhc
Q 000522 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 747 aly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
++.++.+|++||||||||||.-.......+..-...++.|++||||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999999988877664221113457799999999998776 999999999999999999887643
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=362.15 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=182.2
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CCh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1293 (1445)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 4699999999999999999999999999999999999985 48999999999864 445
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~----~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
..+|++++|+||+|.+|+.|++||+.+.. ... ++.+.++++.+++.+.+. ...+..+..||+|||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-----DKLNKSALGLSGGQQQR 158 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-----hHhcCCcccCCHHHHHH
Confidence 67888999999999999999999996421 112 223445566666543322 23445566899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEe-----CCeEeeecCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-----HGHLPHCGCA 1439 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~-----~G~vvE~G~p 1439 (1445)
++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.+ ||++++|+ +|++++.|+|
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999987677999999999999876 79999998 5999999998
Q ss_pred CCC
Q 000522 1440 AAP 1442 (1445)
Q Consensus 1440 ~~~ 1442 (1445)
++.
T Consensus 239 ~~~ 241 (259)
T PRK14260 239 TQI 241 (259)
T ss_pred HHH
Confidence 753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=352.07 Aligned_cols=197 Identities=32% Similarity=0.465 Sum_probs=165.9
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEE
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1445)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 46999999999999999999999999999999999999999999999998874 468899999
Q ss_pred cCCCcc---cCccHHHhcCCCCCC-----------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000522 1304 PQSPFL---FEGSLRDNLDPFHMN-----------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1304 pQdp~l---F~gTIReNLdp~~~~-----------sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1369 (1445)
||+|.+ |+.|++||+...... .++++.++++.. |++........+||||||||++||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV---------GLSELADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc---------CCHHHHhCCcccCCHHHHHHHHHH
Confidence 999976 568999998643211 112334444444 444444455668999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
|||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999998764 68999999999999876 7999999986 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=363.64 Aligned_cols=207 Identities=25% Similarity=0.350 Sum_probs=174.6
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh----hcc
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGR 1299 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~ 1299 (1445)
.++|++.+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56688888864 469999999999999999999999999999999999999999999999999988776543 468
Q ss_pred eEEEcCCCcccC-ccHHHhcCCCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1300 FAVVPQSPFLFE-GSLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1300 i~~VpQdp~lF~-gTIReNLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
++|+||++.+|. .|+++|+.... .... +++.++++. +|++........+||+|||||++||||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~Gq~qrv~lAra 174 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALEL---------VGLEGWEHKYPDELSGGMQQRVGLARA 174 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---------cCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 999999999885 59999996421 1111 223334444 455544555566899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+|++
T Consensus 175 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 175 LAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999998764 37999999999998865 89999999999999998764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=360.67 Aligned_cols=213 Identities=26% Similarity=0.390 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--ChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1294 (1445)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999963 4699999999999999999999999999999999999763 489999999999876 456
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCCCC----C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMN----D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~~~----s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
..|+.++|+||+|.+|++|+++|+.+.... . ++++.++++.+++.+. +.+..+..+.+||+|||||+
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-----VKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-----hHHHhhcChhhCCHHHHHHH
Confidence 778899999999999999999999753211 1 1233444444444322 23345666778999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++.+|+++||||||++||.++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999999999999999999999999999999999987777999999999999975 89999999999999998754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=352.64 Aligned_cols=208 Identities=25% Similarity=0.344 Sum_probs=180.6
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCCcccCccHHHhcCCCC----CC-ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1302 VVPQSPFLFEGSLRDNLDPFH----MN-DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1302 ~VpQdp~lF~gTIReNLdp~~----~~-sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
|+||+|.+|+.|+++|+.... .. .++++ .+.++.+|++ +.......+||+|||||++||||++++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIF---------LDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHH---------HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999996421 11 11122 2344444664 455667778999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEe-CCeEeeecCCC
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILD-HGHLPHCGCAA 1440 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~-~G~vvE~G~p~ 1440 (1445)
|+++||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999998864 3789999999999999999999995 66777888875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=349.39 Aligned_cols=204 Identities=26% Similarity=0.416 Sum_probs=173.0
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCC--CChHhhhcce
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1300 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i 1300 (1445)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 469999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred EEEcCCCcccC-ccHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1301 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1301 ~~VpQdp~lF~-gTIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
+|+||+|.+|+ .|++||+.... ..+.++..+ ...+.++.+|++........+||+|||||++||||++++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 99999999887 59999996532 122222111 123344445666666666778999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeE
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~v 1433 (1445)
|++|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998764 47899999999999975 899999999985
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=361.06 Aligned_cols=216 Identities=25% Similarity=0.373 Sum_probs=178.8
Q ss_pred cEEEEEEEEEeCCC-------CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH
Q 000522 1222 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~ 1294 (1445)
.|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 35799999999999999999999999999999999999999999999999999887654
Q ss_pred h---hhcceEEEcCCCc--ccC-ccHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHH
Q 000522 1295 D---LRGRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQR 1363 (1445)
Q Consensus 1295 ~---lR~~i~~VpQdp~--lF~-gTIReNLdp~----~~~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQr 1363 (1445)
. +|++++|+||+|. +++ .|+++|+... .....++. ...+.+.++.+|++ ...+.....||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~ 156 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMVGLRSEDADKLPRQLSGGQL 156 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 3 6788999999983 443 6999998521 11111111 11123344445665 345566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCC
Q 000522 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAA 1440 (1445)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~ 1440 (1445)
||++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999987643 7899999999999975 8999999999999999986
Q ss_pred CC
Q 000522 1441 AP 1442 (1445)
Q Consensus 1441 ~~ 1442 (1445)
+.
T Consensus 237 ~~ 238 (265)
T TIGR02769 237 QL 238 (265)
T ss_pred HH
Confidence 54
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=355.99 Aligned_cols=211 Identities=28% Similarity=0.388 Sum_probs=177.1
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+. +++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 369999999999999999999999999999999999999999999999999987653 4788999
Q ss_pred EcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||+|.+|++ |+++|+..... .+..+.. ..+.+.++.+|+.........+||+||+||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999986 99999964321 1111110 1123344444554444555568999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|||||++||.++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|+++|.|++++.
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999987643 7999999999999866 899999999999999987653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=363.75 Aligned_cols=214 Identities=25% Similarity=0.388 Sum_probs=180.3
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CCh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~ 1293 (1445)
..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 46999999999964 369999999999999999999999999999999999997 689999999999865 345
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCC---CC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~---~~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1367 (1445)
..+|++++|+||++.+|++|+++|+.... .. .+++++++++..++...+ ....+....+||||||||++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-----KDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-----HHHHhCCcccCCHHHHHHHH
Confidence 67889999999999999999999996421 11 123445555555443211 12345666789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEE-EEeCCeEeeecCCCC
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEIL-ILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~-Vl~~G~vvE~G~p~~ 1441 (1445)
|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+|+|+++.+.. |||++ +|++|+|++.|++.+
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 999999999999999999999999999999999988777899999999999876 89975 579999999998754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=362.08 Aligned_cols=211 Identities=20% Similarity=0.295 Sum_probs=182.2
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
-.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcCCCcccC-ccHHHhcCCCC-C-------CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000522 1301 AVVPQSPFLFE-GSLRDNLDPFH-M-------ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1301 ~~VpQdp~lF~-gTIReNLdp~~-~-------~s---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1368 (1445)
+|+||++.+|. .|+++|+.+.. . .. +++++++++.. |++........+||+|||||++|
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT---------GITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc---------CCHHHhcCCcccCChHHHHHHHH
Confidence 99999998875 59999997531 1 01 12233444443 55544556667899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||++++|++|||||||++||+++.+.+.+.|++.. .++|||+++|+++.+.+ ||+|++|++|++++.|++++.
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998764 37899999999998865 899999999999999987653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=362.17 Aligned_cols=210 Identities=24% Similarity=0.378 Sum_probs=177.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCC--CChHhhhcce
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1300 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i 1300 (1445)
++++||+++|+. ..++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++|
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 789999999963 3469999999999999999999999999999999999999999999999999853 3345678999
Q ss_pred EEEcCCC--cccCccHHHhcCCCC---CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1301 AVVPQSP--FLFEGSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1301 ~~VpQdp--~lF~gTIReNLdp~~---~~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
+|+||+| .+|+.|++||+.... ..+.+ ++.++++.+ |++.........||+|||||++||||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~---------~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV---------GMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC---------CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 9999998 578899999996421 12222 233333433 45444444556899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999998764 48999999999999875 899999999999999998763
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=359.50 Aligned_cols=214 Identities=23% Similarity=0.389 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1445)
.++++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999964 469999999999999999999999999999999999875 389999999999875 3466
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCC---CC-Ch----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~---~~-sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++|+||+|.+|++|+++|+.+.. .. +. +++.++++.+++.+.+.. ..+..+.+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-----KLDKSALGLSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-----HHhCCcccCCHHHHHHH
Confidence 7899999999999999999999997431 11 11 234556666666544332 23555678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+|.+.
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999988778999999999998877 799999999999999998653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=360.56 Aligned_cols=214 Identities=24% Similarity=0.344 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1294 (1445)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5899999999964 369999999999999999999999999999999999986 479999999999853 4566
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCCC---C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~~---~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1368 (1445)
.+|++++++||++.+|+.|+++|+.+... . .++++.++++.+++.+.+. ...+..+.+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-----DKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-----HHhcCCcccCCHHHHHHHHH
Confidence 78899999999999998999999975321 1 1234455566666654332 23455667899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEe---------CCeEeeecC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLPHCGC 1438 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~---------~G~vvE~G~ 1438 (1445)
|||++++|+||||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||||++|+ +|++++.|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999987777899999999998865 79999998 899999999
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
+++.
T Consensus 243 ~~~~ 246 (264)
T PRK14243 243 TEKI 246 (264)
T ss_pred HHHH
Confidence 8654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=370.93 Aligned_cols=213 Identities=28% Similarity=0.378 Sum_probs=179.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999999997654 56789999
Q ss_pred EEcCCCcccC-ccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1302 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~VpQdp~lF~-gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
|+||++.++. .|++||+.++.. .+..+..+. ..+.++.+|++........+||+|||||++|||||+.+|+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999875 599999975321 122222111 1223333355544455556799999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+|++.
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999998864 48999999999999975 899999999999999998764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=371.41 Aligned_cols=214 Identities=19% Similarity=0.311 Sum_probs=174.3
Q ss_pred cEEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCeeCCCCChHh
Q 000522 1222 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1295 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~----~~~G~I~IDG~di~~i~~~~ 1295 (1445)
.++++|++++|+... ..+|+||||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 479999999997532 369999999999999999999999999999999999997 48999999999999988776
Q ss_pred hhc----ceEEEcCCCc--ccCc-cHHHhc----CCCCCCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCCh
Q 000522 1296 LRG----RFAVVPQSPF--LFEG-SLRDNL----DPFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSV 1360 (1445)
Q Consensus 1296 lR~----~i~~VpQdp~--lF~g-TIReNL----dp~~~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSg 1360 (1445)
+|+ ++++|||+|. +.+. |+.+|+ ....... .+++.++|+.+++.+. ....+....+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~------~~~l~~~p~~LSg 156 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP------ASRLDVYPHQLSG 156 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh------HHHHhCCchhCCH
Confidence 653 6999999995 4432 565544 3221112 1234444444443211 1234566778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeec
Q 000522 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G 1437 (1445)
|||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+|||+++.+. .||||+||++|+|+|.|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998864 3889999999999985 58999999999999999
Q ss_pred CCCC
Q 000522 1438 CAAA 1441 (1445)
Q Consensus 1438 ~p~~ 1441 (1445)
++++
T Consensus 237 ~~~~ 240 (326)
T PRK11022 237 KAHD 240 (326)
T ss_pred CHHH
Confidence 8754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=358.63 Aligned_cols=216 Identities=24% Similarity=0.351 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1300 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999963 469999999999999999999999999999999999999999999999999988876554 4569
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC-----------CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM-----------ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~-----------~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1364 (1445)
+|+||+|.+|++ |+++|+.+... .. +.+..+.. ....+.++.+|++...+....+||+||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL--DRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHH--HHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 999999999986 99999975311 00 00000111 11234455557777777788899999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999987642 7899999999999876 89999999999999998865
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=355.98 Aligned_cols=213 Identities=38% Similarity=0.661 Sum_probs=191.7
Q ss_pred CCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcCeEEEEcCC
Q 000522 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1445)
Q Consensus 601 ~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~ 680 (1445)
+.+..++++|+++.+ +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|.|+|++|+
T Consensus 35 ~~~~~l~i~nls~~~--------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~ 106 (282)
T cd03291 35 SDDNNLFFSNLCLVG--------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQF 106 (282)
T ss_pred CCCCeEEEEEEEEec--------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCc
Confidence 345679999999852 225999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCC
Q 000522 681 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV 760 (1445)
Q Consensus 681 p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~ 760 (1445)
+++++.|++||+.++...++.++.+.++++++...+..+|.+.++.+++++.+||||||||++||||++.+|+++|||||
T Consensus 107 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 107 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999999999998765555667788888999888999999998999999999999999999999999999999999999
Q ss_pred CcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 761 LSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 761 ~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
|++||+.+.+.+.+.++.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 187 t~gLD~~~~~~l~~~ll~~-~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 187 FGYLDVFTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999988887754322 345789999999999998899999999999999999988754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=358.36 Aligned_cols=214 Identities=27% Similarity=0.392 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCCCC-hHh
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTP-VRD 1295 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~-~~~ 1295 (1445)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 6899999999964 4699999999999999999999999999999999999986 6999999999997663 456
Q ss_pred hhcceEEEcCCCcccCccHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCc----hhhhcCCCCCChhHHHHHH
Q 000522 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1296 lR~~i~~VpQdp~lF~gTIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLd----t~v~e~G~~LSgGQrQrl~ 1367 (1445)
+|++++|+||+|.+|+.|+++|+.... ..+++++.+.. .+.++.+|++ +.+.....+||+|||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 789999999999999999999997431 12333332211 1223333443 3456667789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||++++|+||||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ ||||++|++|++++.|++++.
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999887667999999999999876 899999999999999987653
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=362.01 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=176.0
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCC--CCChHhhhcce
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGRF 1300 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~--~i~~~~lR~~i 1300 (1445)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999963 46999999999999999999999999999999999999999999999999985 34456778899
Q ss_pred EEEcCCCc--ccCccHHHhcCCCC---CCChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1301 AVVPQSPF--LFEGSLRDNLDPFH---MNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1301 ~~VpQdp~--lF~gTIReNLdp~~---~~sd~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
+|+||+|. ++..|+.+|+.... ..++++ +.++++.. |++........+||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLV---------DAQHFRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CCHhHhcCCchhCCHHHHHHHHHHHH
Confidence 99999985 57789999986421 112222 23333333 44443444556899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+|++
T Consensus 151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999998764 47899999999999865 89999999999999998864
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=358.28 Aligned_cols=213 Identities=24% Similarity=0.355 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCC-CCChHh
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-NTPVRD 1295 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~-~i~~~~ 1295 (1445)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999963 4699999999999999999999999999999999999986 5999999999986 456678
Q ss_pred hhcceEEEcCCCcccCccHHHhcCCCC---CCC-h----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000522 1296 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MND-D----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1296 lR~~i~~VpQdp~lF~gTIReNLdp~~---~~s-d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1367 (1445)
+|+.++|+||+|.+|++|+++|+.... ... + +++.++++.+++.+.+ .........+||+|||||++
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-----KDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-----hHHhhcCcccCCHHHHHHHH
Confidence 899999999999999999999997431 111 1 2233444444443221 23445566789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
||||++.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999987677999999999999886 89999999999999998754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=366.18 Aligned_cols=215 Identities=24% Similarity=0.400 Sum_probs=182.0
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCCC--C
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1292 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1292 (1445)
+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 446999999999964 469999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHhhhcceEEEcCCCcccCccHHHhcCCCCC---------------C-----ChHHHHHHHHHccHHHHHHhCCCchhhh
Q 000522 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---------------N-----DDLKIWSVLEKCHVKEEVEAVGLETFVK 1352 (1445)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lF~gTIReNLdp~~~---------------~-----sd~ei~~aL~~~~l~~~i~~lgLdt~v~ 1352 (1445)
...+|++++|+||++.+|++|+++|+..... . .++++.++++.+++.+. ++...+
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~ 195 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-----VNDRLD 195 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-----hhHHhc
Confidence 5678899999999999999999999974210 0 12234445555544322 234456
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEE-EEEeC
Q 000522 1353 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEI-LILDH 1430 (1445)
Q Consensus 1353 e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI-~Vl~~ 1430 (1445)
....+||||||||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+| ++|++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 667789999999999999999999999999999999999999999999988777899999999999876 8997 56899
Q ss_pred CeEeeecCCCC
Q 000522 1431 GHLPHCGCAAA 1441 (1445)
Q Consensus 1431 G~vvE~G~p~~ 1441 (1445)
|++++.|++++
T Consensus 276 G~i~~~g~~~~ 286 (305)
T PRK14264 276 GELVEYDDTDK 286 (305)
T ss_pred CEEEEeCCHHH
Confidence 99999998764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=333.07 Aligned_cols=204 Identities=31% Similarity=0.399 Sum_probs=174.7
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1445)
+..|+++++++++.. +.+++|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 567999999999853 3469999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEcCCCCCCCc-cHHHHHhcCC----CCChhhHH----HHHHHhcchHH-HhhccCCCcccccCCCCccch
Q 000522 673 ------SIAYVPQVPWILSG-TIRDNILFGK----NYDPQSYS----ETLKACTLDVD-ISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 ------~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~~~~~~----~v~~~~~l~~d-~~~~~~gd~t~vg~~g~~LSG 736 (1445)
++|+++|+--||+. ||+||+.|.. ..+++.++ .-+++++|..+ .+.+| ..|||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSG 148 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSG 148 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcc
Confidence 59999999999987 9999999952 34444443 45678899887 66666 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcC-cccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~-~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
|.+.|+|||||+..||+++++|||||+|||.++..+-+. +.. ...-+.|+|+|||+++.+.. ||+|+++.||+|...
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~L-I~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL-IRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHH-HHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 999999999999999999999999999999987755443 432 12236799999999998776 899999999999999
Q ss_pred cCHhHHHhcc
Q 000522 815 GSSADLAVSL 824 (1445)
Q Consensus 815 g~~~~~~~~~ 824 (1445)
|+++|+.+.+
T Consensus 228 Gt~~el~~sd 237 (263)
T COG1127 228 GTPEELLASD 237 (263)
T ss_pred CCHHHHHhCC
Confidence 9999997643
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=372.33 Aligned_cols=213 Identities=27% Similarity=0.396 Sum_probs=180.4
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..++++|++++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+.+. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 46999999999964 469999999999999999999999999999999999999999999999999987764 47789
Q ss_pred EEEcCCCcccCc-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+||+|++.+|+. |++||+.+.- ..+..++.+ .+.+.++.+|++........+||||||||++|||||+++|
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999997542 122222221 1223344446665556666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|++.
T Consensus 169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 9999999999999999999988777653 37999999999998754 899999999999999998754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=359.87 Aligned_cols=214 Identities=24% Similarity=0.393 Sum_probs=179.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1294 (1445)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999854 4456
Q ss_pred hhhcceEEEcCCCcccC-ccHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~-gTIReNLdp~~----~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
.+|+.++++||++.+|. .|+++|+.... ..+ ++++.++++.+++.+.+ +........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-----KDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 78899999999999997 49999986321 111 12334445554443211 234455667899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEe------CCeEeeecC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD------HGHLPHCGC 1438 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~------~G~vvE~G~ 1438 (1445)
++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|+ +|+|++.|+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 99999999999999999999999999999999999887667999999999999865 89999997 899999999
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
|++.
T Consensus 237 ~~~~ 240 (258)
T PRK14241 237 TEKI 240 (258)
T ss_pred HHHH
Confidence 8643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=338.06 Aligned_cols=195 Identities=28% Similarity=0.369 Sum_probs=160.0
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|++-.|...... ..+|+++||+|++||+++|+|||||||||||+.|-|...|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~--~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEK--VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcc--eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 3466777666543221 4569999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEcCCCCCCCc-cHHHHHhcC----CCCC---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000522 673 ----SIAYVPQVPWILSG-TIRDNILFG----KNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1445)
Q Consensus 673 ----~i~y~~Q~p~l~~~-ti~~nI~~g----~~~~---~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkq 740 (1445)
+|||++|+..|.+. |++|||.+. .... .++.++.++..+|.+... ......|||||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQ 149 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQ 149 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHH
Confidence 49999999987765 999999853 2221 345556666666654433 2345689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEE
Q 000522 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1445)
Q Consensus 741 Rv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~ 812 (1445)
|||||||++.+|++++.||||.+||.++++.+++.+......+|+|+|+|||+......|||++.|+||++.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999863322134578999999999999999999999999954
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=356.09 Aligned_cols=209 Identities=26% Similarity=0.367 Sum_probs=179.9
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999964 46999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCcc-cCccHHHhcCCCCC-C--C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1302 VVPQSPFL-FEGSLRDNLDPFHM-N--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1302 ~VpQdp~l-F~gTIReNLdp~~~-~--s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
|+||++.+ +..|++||+..... . + ++++.++++.. |++.........||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV---------DLAHLAGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc---------CCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 56799999865321 1 1 12233444444 5544455556789999999999999999
Q ss_pred ------cCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCC
Q 000522 1374 ------KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1374 ------r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+. -||+|++|++|++++.|++++
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 5999999999999999999999999998764 4789999999999887 589999999999999998765
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=367.01 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=175.9
Q ss_pred cEEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCeeCCCCChHhh
Q 000522 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINTPVRDL 1296 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~---~G~I~IDG~di~~i~~~~l 1296 (1445)
.++++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 246999999999999999999999999999999999999996 9999999999999987766
Q ss_pred h----cceEEEcCCC--cccC-ccHHHhcC----CCCCCChHH----HHHHHHHccHHHHHHhCCCc---hhhhcCCCCC
Q 000522 1297 R----GRFAVVPQSP--FLFE-GSLRDNLD----PFHMNDDLK----IWSVLEKCHVKEEVEAVGLE---TFVKESGISF 1358 (1445)
Q Consensus 1297 R----~~i~~VpQdp--~lF~-gTIReNLd----p~~~~sd~e----i~~aL~~~~l~~~i~~lgLd---t~v~e~G~~L 1358 (1445)
| ++|++||||| .+++ -|+.+|+. .+...+.++ +.+.|+.+ |++ ..++..+..|
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v---------gL~~~~~~~~~~p~~L 162 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV---------KMPEARKRMKMYPHEF 162 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc---------CCCChHHHhcCCcccC
Confidence 4 4799999999 4555 37777662 222222222 22333333 443 2345667789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEee
Q 000522 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPH 1435 (1445)
Q Consensus 1359 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE 1435 (1445)
|||||||++|||||+.+|++||+|||||+||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999974 89999999999999
Q ss_pred ecCCCCC
Q 000522 1436 CGCAAAP 1442 (1445)
Q Consensus 1436 ~G~p~~~ 1442 (1445)
.|++++.
T Consensus 243 ~g~~~~i 249 (330)
T PRK09473 243 YGNARDV 249 (330)
T ss_pred ECCHHHH
Confidence 9987553
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=357.43 Aligned_cols=209 Identities=22% Similarity=0.310 Sum_probs=179.9
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EcCCCc-ccCccHHHhcCCCCC--------C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000522 1303 VPQSPF-LFEGSLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1370 (1445)
Q Consensus 1303 VpQdp~-lF~gTIReNLdp~~~--------~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1370 (1445)
+||++. .+..|+++|+..+.. . .++++.++++.+ |+..........||+|||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrl~la~ 150 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART---------ELSHLADRDMSTLSGGERQRVHVAR 150 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc---------CcHhhhcCCcccCCHHHHHHHHHHH
Confidence 999995 456799999965321 0 112334444444 4444445556689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 151 ALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999999998764 3789999999999995 5999999999999999987653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=359.27 Aligned_cols=215 Identities=25% Similarity=0.350 Sum_probs=182.2
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CCh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1293 (1445)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999964 3699999999999999999999999999999999999864 59999999999864 344
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCCC---C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~~---~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1367 (1445)
..+|++++|+||++.+|++|+++|+..... . .++++.++++.+++.+.+ ..........||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-----KDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-----HHHhcCCcccCCHHHHHHHH
Confidence 567899999999999998999999965321 1 133445556666554332 22344556789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEe---------CCeEeeec
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLPHCG 1437 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~---------~G~vvE~G 1437 (1445)
|||||+++|+||||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|++++.|
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeC
Confidence 999999999999999999999999999999999988778999999999998865 89999997 89999999
Q ss_pred CCCCC
Q 000522 1438 CAAAP 1442 (1445)
Q Consensus 1438 ~p~~~ 1442 (1445)
++++.
T Consensus 252 ~~~~~ 256 (274)
T PRK14265 252 PTEQM 256 (274)
T ss_pred CHHHH
Confidence 98653
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=355.23 Aligned_cols=214 Identities=22% Similarity=0.367 Sum_probs=179.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCee-----CCCCChHh-
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1295 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d-----i~~i~~~~- 1295 (1445)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999964 469999999999999999999999999999999999999999999999999 87776654
Q ss_pred ---hhcceEEEcCCCc--ccC-ccHHHhcCC----CCCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000522 1296 ---LRGRFAVVPQSPF--LFE-GSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1364 (1445)
Q Consensus 1296 ---lR~~i~~VpQdp~--lF~-gTIReNLdp----~~~~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQ 1364 (1445)
.|+.++|+||+|. ++. .|+++|+.. +......++.+ ...+.++.+|++ +..+..+.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 3567999999984 343 478888742 11111112211 234555666776 4677888899999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|++||||++++|+||||||||++||+++.+.+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|++++.|+|++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999985 89999999999999999865
Q ss_pred C
Q 000522 1442 P 1442 (1445)
Q Consensus 1442 ~ 1442 (1445)
.
T Consensus 239 ~ 239 (258)
T PRK11701 239 V 239 (258)
T ss_pred H
Confidence 4
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=356.66 Aligned_cols=213 Identities=26% Similarity=0.360 Sum_probs=179.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~--i~~~ 1294 (1445)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 469999999999999999999999999999999999975 4 58999999999864 3455
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCC---C-CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~---~-~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|++++|+||+|.+|++|+++|+.... . .. ++++.++++.+++.+. +.........+||+|||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-----VKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-----hhhHHhcCcccCCHHHHHHH
Confidence 6788999999999999999999986421 1 11 1233444455444321 22344556678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|+||||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+|.+
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999987667899999999999875 89999999999999998754
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=352.17 Aligned_cols=210 Identities=28% Similarity=0.393 Sum_probs=176.7
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+. .++++|+||+|+|||++||+|+||||||||+++|.|+++|.+|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 478999999974 369999999999999999999999999999999999999999999999999987664 3678999
Q ss_pred EcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||+|.+|.+ |+++|+.+... .+..... ....+.++.+|++........+||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-----ERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999976 99999864211 1111110 1122333334666556666678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|++.+
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999999987643 8999999999999875 79999999999999998654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=372.51 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=168.8
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh----hcceEEEcCCCcccCc-
Q 000522 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG- 1312 (1445)
Q Consensus 1238 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~i~~VpQdp~lF~g- 1312 (1445)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+...+...+ |++++|+||++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998877654 4689999999999975
Q ss_pred cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCC
Q 000522 1313 SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389 (1445)
Q Consensus 1313 TIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD 1389 (1445)
|++||+.+.. ..+.++..+ ...+.++.+||+........+||||||||++|||||+.+|+|||||||||+||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 9999997432 112222111 12233344466555566667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1390 AQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1390 ~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+.+.+.+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 197 ~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 197 PLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 999999999998764 48999999999998865 899999999999999988653
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=356.62 Aligned_cols=213 Identities=24% Similarity=0.340 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1294 (1445)
.+.+++.+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .+..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 4699999999999999999999999999999999999986 79999999999864 3445
Q ss_pred hhhcceEEEcCCCcccCccHHHhcCCCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~gTIReNLdp~~~------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1368 (1445)
.+|++++|+||+|.+|..|++||+.+... ..++++.++++.+++.+.+. ...++...+||+|||||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-----DKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-----hhhhCCcccCCHHHHHHHHH
Confidence 67889999999999999999999975421 11235566666666544332 23445667899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEe--------CCeEeeecCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD--------HGHLPHCGCA 1439 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~--------~G~vvE~G~p 1439 (1445)
|||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999999999999999988778999999999998875 89999996 8999999997
Q ss_pred CC
Q 000522 1440 AA 1441 (1445)
Q Consensus 1440 ~~ 1441 (1445)
++
T Consensus 241 ~~ 242 (261)
T PRK14263 241 AQ 242 (261)
T ss_pred HH
Confidence 64
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=361.81 Aligned_cols=215 Identities=25% Similarity=0.338 Sum_probs=179.1
Q ss_pred CccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCeeCCCC--C
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1292 (1445)
Q Consensus 1220 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1292 (1445)
...|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346899999999964 369999999999999999999999999999999999865 4999999999998643 3
Q ss_pred hHhhhcceEEEcCCCcccCccHHHhcCCCC---CC-C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000522 1293 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1364 (1445)
Q Consensus 1293 ~~~lR~~i~~VpQdp~lF~gTIReNLdp~~---~~-s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1364 (1445)
...+|++++|+||+|.+|++|++||+.+.. .. + ++++.++++..++.+.+ ..........|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-----SDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-----hhHhhCChhhCCHHHHH
Confidence 346788999999999999899999997431 11 1 12234444444432211 22334556689999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|++|||||+++|++|||||||++||.++.+.+.+.|++..+++|||+++|+++.+.+ ||+|++|++|++++.|+|.+
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999887667899999999999875 89999999999999998754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=350.47 Aligned_cols=212 Identities=27% Similarity=0.363 Sum_probs=173.0
Q ss_pred EEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCeeCCCCChHhhh
Q 000522 1223 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLR 1297 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR 1297 (1445)
++|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3689999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEcCCCcccCc-cHHHhcCCCCC-CChHHHHHHHHHccHHH-HHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1298 GRFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKE-EVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~g-TIReNLdp~~~-~sd~ei~~aL~~~~l~~-~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
++++++||++.+|++ |++||+.+... .......+..+.....+ .++.++++........+||+|||||++||||+++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 899999999999987 99999974311 00000001111111122 3333466555555667899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccCh-hHH-hhcCEEEEEeCCeEeeec
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRI-STV-LNMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl-~ti-~~~DrI~Vl~~G~vvE~G 1437 (1445)
+|+||||||||++||+.+.+.+.+.|++.. +++|+|+++|++ +.+ ..||+|++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998764 478999999998 355 568999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=362.27 Aligned_cols=210 Identities=29% Similarity=0.471 Sum_probs=183.2
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++||+.+|+. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 24699999999999999999999999999999999999999999999999998765 778899999
Q ss_pred EEcCCCcccCc-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~-------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
|+||+|.+++. |++|||+++.. ..++++.+.++..+|.+ .-......||+|||||+.||+||+
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED---------KANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch---------hhCcchhhcCHHHHHHHHHHHHHh
Confidence 99999998876 99999986532 12345666666665543 123334469999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhCC-C-cEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSECK-G-MTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~-~-~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++.+|+++++
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999998865 4 799999999999988 999999999999999987654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=348.89 Aligned_cols=212 Identities=29% Similarity=0.449 Sum_probs=185.2
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|.... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDG----PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCCC----ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 35789999985321 2359999999999999999999999999999999999999999999876
Q ss_pred eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000522 673 SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1445)
Q Consensus 673 ~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~ 751 (1445)
.++|++|++++++.|++||+.++.. ...+...+.++..++.+.++.+|.|.++..+..+.+|||||||||+||||++.+
T Consensus 77 ~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred cEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 3899999999999999999988643 334445556666778777888998888888899999999999999999999999
Q ss_pred CCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhc
Q 000522 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 752 ~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRN-MHD-ICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999988876 433 3457899999999999988999999999999999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=356.71 Aligned_cols=213 Identities=23% Similarity=0.290 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--------CcEEEECCeeCCCCChH
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--------GGQILVDGLNIINTPVR 1294 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~--------~G~I~IDG~di~~i~~~ 1294 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 36999999999999999999999999999999999999998 99999999999888888
Q ss_pred hhhcceEEEcCCCc-ccCccHHHhcCCCCC-C----C--hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000522 1295 DLRGRFAVVPQSPF-LFEGSLRDNLDPFHM-N----D--DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~-lF~gTIReNLdp~~~-~----s--d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1366 (1445)
.+|+.++++||++. +|..|++||+..... . . ..+. .....+.++.+|+++..+.....||||||||+
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRD-----GEIAWQALALAGATALVGRDVTTLSGGELARV 154 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHH-----HHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 88889999999986 578899999965321 0 0 0110 01123334444666667777788999999999
Q ss_pred HHHHHhc---------cCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEe
Q 000522 1367 CLARALL---------KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLP 1434 (1445)
Q Consensus 1367 ~LARALL---------r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vv 1434 (1445)
+|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|+|+++.+. .||+|++|++|+++
T Consensus 155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~ 234 (272)
T PRK13547 155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234 (272)
T ss_pred HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 9999999 59999999999999999999999999987643 789999999999986 48999999999999
Q ss_pred eecCCCCC
Q 000522 1435 HCGCAAAP 1442 (1445)
Q Consensus 1435 E~G~p~~~ 1442 (1445)
+.|++++.
T Consensus 235 ~~g~~~~~ 242 (272)
T PRK13547 235 AHGAPADV 242 (272)
T ss_pred EecCHHHH
Confidence 99987653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=344.37 Aligned_cols=201 Identities=21% Similarity=0.354 Sum_probs=171.2
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++||+++|+. .++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EcCCCcccCc-cHHHhcCCC-CC-C-----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1303 VPQSPFLFEG-SLRDNLDPF-HM-N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~-~~-~-----sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+||+|.+|.+ |+++|+... .. . .++++.++++..+ ++........+||+|||||++||||+++
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG---------IADYLDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcC---------cHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999975 999998632 11 1 1223444455444 4444444556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecC
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~ 1438 (1445)
+|+|++|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999998864 37899999999999875 89999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=353.19 Aligned_cols=206 Identities=27% Similarity=0.339 Sum_probs=172.5
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999999998642 346899
Q ss_pred EcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||++.+|+ .|+++|+.... .....+.. ....+.++.+|++........+||||||||++||||++++|++
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 59999996431 11211111 1123334444665555566678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEe--CCeEeeecCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLPHCGCAA 1440 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~--~G~vvE~G~p~ 1440 (1445)
|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.+++.
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999998763 48999999999999865 89999998 59999988653
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=355.95 Aligned_cols=213 Identities=26% Similarity=0.404 Sum_probs=177.1
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCeeCCC--CChH
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~--i~~~ 1294 (1445)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999999875 3455
Q ss_pred hhhcceEEEcCCCcccCc-cHHHhcCCCC---C-CChHHHH----HHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---M-NDDLKIW----SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~g-TIReNLdp~~---~-~sd~ei~----~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
.+|++++|+||+|.+|.+ |+++|+.... . ..+++.. +.++..++++. +.........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-----VKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-----hhhhhcCCcccCCHHHHHH
Confidence 778899999999999985 9999996321 1 1222222 22333333221 1222334456899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|+|++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987668999999999999986 89999999999999998764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=356.60 Aligned_cols=215 Identities=26% Similarity=0.364 Sum_probs=181.6
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCeeCCC--CCh
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPV 1293 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~--i~~ 1293 (1445)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 36999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLdp~~----~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1365 (1445)
..+|+.++++||++.+|+.|++||+.+.. ..+ ++++.++++.+++.+++ +...+.....||+|||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-----KHKIHKSALDLSGGQQQR 158 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67889999999999999999999996421 112 12344555555554332 223455667899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeC-----CeEeeec
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDH-----GHLPHCG 1437 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~-----G~vvE~G 1437 (1445)
++||||++++|+||||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++.|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 999999999999999999999999999999999998742 48999999999999875 799999999 9999999
Q ss_pred CCCCC
Q 000522 1438 CAAAP 1442 (1445)
Q Consensus 1438 ~p~~~ 1442 (1445)
+|++.
T Consensus 239 ~~~~~ 243 (261)
T PRK14258 239 LTKKI 243 (261)
T ss_pred CHHHH
Confidence 98653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=360.33 Aligned_cols=203 Identities=28% Similarity=0.399 Sum_probs=174.8
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|++-.|.. ..+++|+||+|++||++++.|||||||||+|++|.|+..|++|+|.++|
T Consensus 4 ~~l~i~~v~k~yg~------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeeeeecCC------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 46899999988862 2359999999999999999999999999999999999999999999987
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCCC----C-h---hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000522 673 SIAYVPQVPWILSG-TIRDNILFGKNY----D-P---QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~~----~-~---~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~ 743 (1445)
.|++|+|+.-||+- ||+|||.||... . + +++.++++..+|..-. ..+...||||||||||
T Consensus 78 ~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVA 146 (352)
T COG3842 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVA 146 (352)
T ss_pred ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHH
Confidence 59999999999965 999999999662 2 2 3677777777776533 3456799999999999
Q ss_pred HHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchh-hhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
|||||..+|+++|||||+||||.+..+++-..+.......|.|.|+|||+.+. +..+|+|++|++|+|...|+++|+..
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999999999998887776433323347899999999876 66799999999999999999999965
Q ss_pred c
Q 000522 823 S 823 (1445)
Q Consensus 823 ~ 823 (1445)
.
T Consensus 227 ~ 227 (352)
T COG3842 227 R 227 (352)
T ss_pred C
Confidence 4
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=347.78 Aligned_cols=204 Identities=23% Similarity=0.379 Sum_probs=173.7
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++||+++|+.. ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999632 249999999999999999999999999999999999999999999999887654 3678999
Q ss_pred EcCCCcccCc-cHHHhcCCCC-CC------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFH-MN------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~-~~------sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+||+|.+|.+ |+++|+.... .. .++++.++++.++ ++..+......||+|||||++||||+++
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG---------IEDLLARLPGQLSGGQRQRVALARCLVR 146 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcC---------cHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999997421 11 1233444555554 4444455556799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+|+++||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999987643 7899999999999876 89999999999999998764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=353.92 Aligned_cols=212 Identities=20% Similarity=0.282 Sum_probs=174.5
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCeeCCCCChHhh-hcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDL-RGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~l-R~~ 1299 (1445)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999963 46999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred eEEEcCCCcccCc-cHHHhcCCCCC----------CChHHHHHHHHHccHHHHHHhCCCchh-hhcCCC-CCChhHHHHH
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFHM----------NDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGI-SFSVGQRQLI 1366 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~~~----------~sd~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~-~LSgGQrQrl 1366 (1445)
++++||+|.+|++ |+++|+..... .+.++.. + .+.+.++.+|++.. ...... .||+|||||+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL---K--LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH---H--HHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 9999999999987 89999853210 0111111 1 12333444466533 233333 4999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh--cCEEEEEeCCeEeeecCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~--~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+||||++++|++|||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+|++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999998764 47899999999999986 79999999999999998864
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=347.00 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=175.6
Q ss_pred EEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hhh
Q 000522 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1297 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1297 (1445)
++++|++++|+++. ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997532 5699999999999999999999999999999999999999999999999999877653 468
Q ss_pred cceEEEcCCCcccC-ccHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1298 GRFAVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~-gTIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
+.++++||+|.+|. .|+.+|+.+.. ..+.++..+ ...+.++.+|++........+||+|||||++||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 89999999999987 69999997532 122222211 123444555776666667778999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeE
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHL 1433 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~v 1433 (1445)
+++|++|+|||||++||+++.+.+.+.|++.. .++|+|+|+|+++....||+|++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999998765 37999999999998777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=368.60 Aligned_cols=200 Identities=26% Similarity=0.341 Sum_probs=166.9
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCe----eCCCCChHhhh----cceEEEcCCCcc
Q 000522 1238 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL----NIINTPVRDLR----GRFAVVPQSPFL 1309 (1445)
Q Consensus 1238 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~----di~~i~~~~lR----~~i~~VpQdp~l 1309 (1445)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||. |+...+.+.+| ++++||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 67777665543 579999999999
Q ss_pred cC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccc
Q 000522 1310 FE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385 (1445)
Q Consensus 1310 F~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaT 1385 (1445)
|+ .|++||+.+.. ..+.++.. ....+.++.+||+........+||||||||++|||||+++|+||||||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 98 69999996432 11222111 11223333345555455556689999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1386 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1386 S~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|+||+.+.+.+++.|++..+ ++|+|+|||+++.+. .||||++|++|++++.|+|++.
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI 252 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999987643 799999999999875 5899999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=348.24 Aligned_cols=205 Identities=27% Similarity=0.430 Sum_probs=175.3
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+. .+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 478999999963 38999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EcCCCcccC-ccHHHhcCCCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+||++.+|. .|++||+.... ..+ ++++.++++.+ |+...+.....+||+|||||++||||+++
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML---------GIDHLLNRKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CChhHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 999999986 69999996421 111 12333444444 44444555566899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+|++++|||||++||..+.+.+.+.+++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999988643 8999999999999876 89999999999999998754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=339.91 Aligned_cols=200 Identities=30% Similarity=0.398 Sum_probs=167.4
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
|.+++.+..|.. ..+++|||++|+.||++++.|||||||||||++|.|+..|++|.|.++|
T Consensus 3 i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 3 IRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred eeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhh
Confidence 556666666653 2348999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcCCCCCCC-ccHHHHHhcCCCCC---------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 -SIAYVPQVPWILS-GTIRDNILFGKNYD---------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~-~ti~~nI~~g~~~~---------~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
+||||.|+.-+|. .||.|||.||.+.. ..+..+.++.|.|+.--+. ....||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHH
Confidence 5999999999885 59999999996322 2456677888888654333 446899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccC-CceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 819 (1445)
||||||+...|++|||||||+|||+++.+.+-..+ ..-..+ |.|+|+||||.++.. .||+|++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wL-r~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWL-RKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHH-HHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999888765542 221222 679999999998855 599999999999999999999
Q ss_pred HHhc
Q 000522 820 LAVS 823 (1445)
Q Consensus 820 ~~~~ 823 (1445)
+...
T Consensus 225 v~~~ 228 (345)
T COG1118 225 VYDH 228 (345)
T ss_pred HhcC
Confidence 9654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=363.58 Aligned_cols=200 Identities=26% Similarity=0.375 Sum_probs=170.1
Q ss_pred EeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCccc
Q 000522 1231 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1310 (1445)
Q Consensus 1231 ~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF 1310 (1445)
+|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4642 469999999999999999999999999999999999999999999999999976 3456788999999999999
Q ss_pred Cc-cHHHhcCCCCC---CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1311 EG-SLRDNLDPFHM---NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1311 ~g-TIReNLdp~~~---~sd----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
.+ |++||+.+... .+. +++.++++. +|++........+||||||||++|||||+++|++|+||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 149 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLEL---------FELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------cCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 86 99999965321 111 223333444 45544445555689999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1383 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|+|++.
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999998764 47999999999999875 899999999999999988653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=353.72 Aligned_cols=212 Identities=24% Similarity=0.356 Sum_probs=175.8
Q ss_pred cEEEEEEEEEeCC-------CCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH
Q 000522 1222 LIEFQNVTMRYKP-------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~-------~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~ 1294 (1445)
.|+++||+++|+. +..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 124699999999999999999999999999999999999999999999999999766666
Q ss_pred hhhcceEEEcCCCc--ccCc-cHHHhcCCC---C-CCC----hHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhH
Q 000522 1295 DLRGRFAVVPQSPF--LFEG-SLRDNLDPF---H-MND----DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQ 1362 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~--lF~g-TIReNLdp~---~-~~s----d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQ 1362 (1445)
..|++++|+||+|. +++. |+.+|+... + ... ++++.++++.+ |++. .......+||+||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQV---------GLLPDHASYYPHMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc---------CCChHHHhcCchhcCHHH
Confidence 66778999999985 4544 888887531 1 111 22344444444 4432 2233445799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCC
Q 000522 1363 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1363 rQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p 1439 (1445)
|||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 234 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999998864 37899999999999987 899999999999999987
Q ss_pred CCC
Q 000522 1440 AAP 1442 (1445)
Q Consensus 1440 ~~~ 1442 (1445)
++.
T Consensus 235 ~~~ 237 (267)
T PRK15112 235 ADV 237 (267)
T ss_pred HHH
Confidence 643
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=365.72 Aligned_cols=214 Identities=20% Similarity=0.328 Sum_probs=174.5
Q ss_pred cEEEEEEEEEeCC--CCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCeeCCCCChHh
Q 000522 1222 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1295 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~----~~~G~I~IDG~di~~i~~~~ 1295 (1445)
.++++|++++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22469999999999999999999999999999999999986 58999999999999888766
Q ss_pred hh----cceEEEcCCCc--ccC-ccHHHhcCCC-------CC-CC-----hHHHHHHHHHccHHHHHHhCCCchhhhcCC
Q 000522 1296 LR----GRFAVVPQSPF--LFE-GSLRDNLDPF-------HM-ND-----DLKIWSVLEKCHVKEEVEAVGLETFVKESG 1355 (1445)
Q Consensus 1296 lR----~~i~~VpQdp~--lF~-gTIReNLdp~-------~~-~s-----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G 1355 (1445)
++ ++|++|||+|. +++ -||.+|+... .. .. ++++.++|+.++|.+. ........
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~------~~~~~~~p 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH------KDAMRSFP 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh------HHHHhCCc
Confidence 53 47999999996 333 4888887420 00 01 1233344444433211 01235556
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCe
Q 000522 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1432 (1445)
Q Consensus 1356 ~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1432 (1445)
..||||||||++|||||+.+|+|||+||||++||+.+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999987643 7999999999999975 89999999999
Q ss_pred EeeecCCCC
Q 000522 1433 LPHCGCAAA 1441 (1445)
Q Consensus 1433 vvE~G~p~~ 1441 (1445)
|+|.|++++
T Consensus 237 ive~g~~~~ 245 (330)
T PRK15093 237 TVETAPSKE 245 (330)
T ss_pred EEEECCHHH
Confidence 999998754
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=344.28 Aligned_cols=211 Identities=28% Similarity=0.440 Sum_probs=187.7
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|... .++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDEK-----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCCC-----CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 47899999998531 2359999999999999999999999999999999999999999999875
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000522 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~ 750 (1445)
.++|++|+|+++++|++||+.++.+ ...++..+.++.+++...++.+|.|.++..+....+|||||||||+||||+++
T Consensus 77 ~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 77 SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred hhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999998754 34456677788889988899999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.++.||++++|++|++.+.|+.+++..
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEA-LEK-LMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999988876 433 345789999999999998899999999999999999887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=350.41 Aligned_cols=215 Identities=28% Similarity=0.376 Sum_probs=179.0
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC------eeCCCCChH
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG------LNIINTPVR 1294 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG------~di~~i~~~ 1294 (1445)
..++++|++++|+. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++| .|+.+.+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999964 4699999999999999999999999999999999999999997666655 677777777
Q ss_pred hhhcceEEEcCCCcccCc-cHHHhcCCCC---CC-ChHHHHHHHHHccHHHHHHhCCCc----hhhhcCCCCCChhHHHH
Q 000522 1295 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---MN-DDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQL 1365 (1445)
Q Consensus 1295 ~lR~~i~~VpQdp~lF~g-TIReNLdp~~---~~-sd~ei~~aL~~~~l~~~i~~lgLd----t~v~e~G~~LSgGQrQr 1365 (1445)
.+|++++|+||+|.+|.+ |+++|+.... .. .++++++. +.+.++.+|++ ...+..+..||+|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 889999999999999986 9999997431 11 22232221 12222333443 23455667899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1366 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1366 l~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++||||++++|++++|||||++||..+.+.+.+.|++..+++|+|+|||+++.+. -||++++|++|++++.|++++.
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998777899999999999995 5899999999999999987653
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=353.93 Aligned_cols=219 Identities=21% Similarity=0.332 Sum_probs=182.1
Q ss_pred cEEEEEEEEEeCCC-------CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH
Q 000522 1222 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~ 1294 (1445)
.|+++||+++|+.+ .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 35799999999999999999999999999999999999999999999999999887653
Q ss_pred ---hhhcceEEEcCCCc--cc-CccHHHhcCCC-CCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHH
Q 000522 1295 ---DLRGRFAVVPQSPF--LF-EGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLI 1366 (1445)
Q Consensus 1295 ---~lR~~i~~VpQdp~--lF-~gTIReNLdp~-~~~sd~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl 1366 (1445)
.+|+.++|+||++. ++ ..|+++|+... ....+ +...-....+.+.++.+|+++ ..+.....||+|||||+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 46889999999983 44 36999997431 10000 001111223445566668864 56677788999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1367 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1367 ~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|||||+++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 999999999999999999999999999999999987643 7899999999999985 899999999999999998875
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=347.77 Aligned_cols=214 Identities=27% Similarity=0.359 Sum_probs=190.8
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1445)
.+.++++|+++.|+.. . ..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENN-L---KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred CceEEEEEEEEEeCCC-C---CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 4679999999999642 1 2359999999999999999999999999999999999999999999875
Q ss_pred ---eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000522 673 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly 749 (1445)
.++||+|+|+++++|++||+........+.+.++++..++...++.+|.|.++.+++.+.+||||||||++||||++
T Consensus 93 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 93 LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 48999999999999999999765444455677788888998889999999999999999999999999999999999
Q ss_pred cCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 750 ~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
++|++++|||||++||+++.+.+++. +.. +.+++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKV-VMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHH-HHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999988877765 433 345789999999999998999999999999999999988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=353.34 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=178.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCeeCCCC-----Ch
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINT-----PV 1293 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~---~G~I~IDG~di~~i-----~~ 1293 (1445)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999963 46999999999999999999999999999999999999986 49999999998654 34
Q ss_pred HhhhcceEEEcCCCcccCc-cHHHhcCCCCCC-----------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChh
Q 000522 1294 RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN-----------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVG 1361 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~g-TIReNLdp~~~~-----------sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgG 1361 (1445)
..+|++++|+||++.+|.+ |+++|+...... .+++. +....+.++.+|++.........||+|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ-----KQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHH-----HHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 5678899999999998875 999999643110 00110 111233444446655556667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecC
Q 000522 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGC 1438 (1445)
Q Consensus 1362 QrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~ 1438 (1445)
||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~ 236 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998864 3799999999999865 589999999999999999
Q ss_pred CCCC
Q 000522 1439 AAAP 1442 (1445)
Q Consensus 1439 p~~~ 1442 (1445)
|++.
T Consensus 237 ~~~~ 240 (262)
T PRK09984 237 SQQF 240 (262)
T ss_pred HHHh
Confidence 8765
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=328.24 Aligned_cols=171 Identities=44% Similarity=0.760 Sum_probs=162.0
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+...+++++|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
+||+|.+|++|++||+ ||+|||||++||||++++|++|+||
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~llllD 121 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------LSGGQRQRIAIARALLRDPPILILD 121 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 9999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCe
Q 000522 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1432 (1445)
|||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 122 EP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 122 EATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999988767899999999999999999999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=327.32 Aligned_cols=207 Identities=28% Similarity=0.357 Sum_probs=172.9
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|.++.|.... ....+|+||||++.+||..+|+|+||||||||+++|+|..+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~--~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGK--FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCc--chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 478899999987542 123579999999999999999999999999999999999999999999987
Q ss_pred --eEEEEcCCCC--CC-CccHHHHHhcCC-----CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 --SIAYVPQVPW--IL-SGTIRDNILFGK-----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 --~i~y~~Q~p~--l~-~~ti~~nI~~g~-----~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.|-+|+|+|. +- .-||++-|.=+. +-.+++..++++..+|..... ......|||||||||
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l----------~R~P~eLSGGQ~QRi 150 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFL----------DRRPHELSGGQRQRI 150 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHH----------hcCchhcChhHHHHH
Confidence 3899999997 22 348888885322 222455778888888876532 344568999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
||||||..+|+++|||||||+||+.+...|++-+..-...++-|.|+|||++..+.+ ||||++|++|++++.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999999999999999999999999999986443323456699999999999987 9999999999999999988876
Q ss_pred hc
Q 000522 822 VS 823 (1445)
Q Consensus 822 ~~ 823 (1445)
..
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 43
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=339.86 Aligned_cols=203 Identities=30% Similarity=0.409 Sum_probs=175.8
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.+.++|.+|.|++. .++|+|+||++++|+.++|+|+||||||||++.+.|.++|++|.|.++|
T Consensus 3 ~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 3 MIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred eEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 47889999999754 3459999999999999999999999999999999999999999998866
Q ss_pred --eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 --SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 --~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
+||||.|+| .++..||.|.|.||.. .++ ++.+++++.|++.+..+.. ..+||||||||
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqR 146 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQR 146 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceee
Confidence 399999999 6899999999999853 233 4677888888887664433 45899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
||||.+|..+|++++||||||+||+...+.+++.+..-....++|+|++||+++.+.. ||++++|++|+++.+|++.++
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999886332212336899999999999877 999999999999999999887
Q ss_pred Hhc
Q 000522 821 AVS 823 (1445)
Q Consensus 821 ~~~ 823 (1445)
.+.
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=321.28 Aligned_cols=213 Identities=26% Similarity=0.410 Sum_probs=182.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
+++.+++.+|++ ...+++||||+++.||.+||.|++||||||+++.|..++.|++|+|+|||.|+..-| ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 678999999976 335899999999999999999999999999999999999999999999999997755 567999999
Q ss_pred EcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
++-+.-++.. |.||||.+|+. .++.++. +.+.+..+.++++..+..+-.+||.|+|||++|||||+++|+|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 9977777765 99999988753 2333332 2233344444555555555557999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCC-CcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~-~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++||||||+||..+.+.+++.|++... +++||+-||-++.++ -||||+++++|+++..|+++++
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 999999999999999999999987754 999999999999998 6999999999999999998754
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=340.38 Aligned_cols=206 Identities=32% Similarity=0.443 Sum_probs=184.7
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+... +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPNL----PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCCC----cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 378999999996321 2469999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000522 673 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 751 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~ 751 (1445)
.++|++|+|.++++|++|||.+......++..+.++..++.+.+..+|.|.++..++.+.+||||||||++||||++.+
T Consensus 78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999987666666677788888999988999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecC
Q 000522 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 752 ~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1445)
|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKT-IRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999998888776 433 345689999999999998999999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=343.17 Aligned_cols=211 Identities=31% Similarity=0.484 Sum_probs=186.6
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------e
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 673 (1445)
+++|+++.|.... .++++|+||++++|++++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (234)
T cd03251 2 EFKNVTFRYPGDG----PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ 77 (234)
T ss_pred EEEEEEEEeCCCC----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 5788899885321 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000522 674 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1445)
Q Consensus 674 i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~ 752 (1445)
++|++|+|++++.|++||+.++.. ..++.+.+.++.+.+.+.++.+|.|.++..+....+||||||||++||||++.+|
T Consensus 78 i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 78 IGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999999999999999998753 3455667777888888889999988888899999999999999999999999999
Q ss_pred CEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHhc
Q 000522 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 753 ~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 158 PILILDEATSALDTESERLVQAA-LER-LMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 99999999999999999988776 433 3457899999999999988999999999999999998887644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=342.10 Aligned_cols=204 Identities=30% Similarity=0.394 Sum_probs=174.0
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ++.+++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 46999999999999999999999999999999999999999999999999875422 357999
Q ss_pred EcCCCcccC-ccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||++.+|. .|+++|+.+.. ..+++++.++++..++ +........+||+|||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL---------TNTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC---------cHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 59999986421 2234455555555544 4334444567999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+|.+
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999998764 47899999999999864 89999999999999998865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=325.38 Aligned_cols=202 Identities=25% Similarity=0.385 Sum_probs=170.2
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|++-.|+.. ..+|+||||+|++||+++|+|+|||||||||++|.|..+|++|+|.++|
T Consensus 2 ~~i~~~nl~k~yp~~-----~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPGG-----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCCC-----ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 358899999999743 3459999999999999999999999999999999999999999999886
Q ss_pred -----eEEEEcCCCCCCCc-cHHHHHhcCCC------------CChhhHHHHH---HHhcchHHHhhccCCCcccccCCC
Q 000522 673 -----SIAYVPQVPWILSG-TIRDNILFGKN------------YDPQSYSETL---KACTLDVDISLMVGGDMAYIGEKG 731 (1445)
Q Consensus 673 -----~i~y~~Q~p~l~~~-ti~~nI~~g~~------------~~~~~~~~v~---~~~~l~~d~~~~~~gd~t~vg~~g 731 (1445)
+|||++|++.|.+. ||.+|++.|+- +.++....++ +..++.+. .-.+.
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra 145 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRA 145 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHh
Confidence 59999999998865 99999998743 2333333333 33333322 23466
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeCCE
Q 000522 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 810 (1445)
Q Consensus 732 ~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~ 810 (1445)
.+|||||+|||+|||||+++|+|+|-|||+|+|||.+++++++.+..-....|.|+|+.-|++++.. +||||+-|++|+
T Consensus 146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 7999999999999999999999999999999999999999999744333456889999999999866 599999999999
Q ss_pred EEEecCHhHHH
Q 000522 811 VKWIGSSADLA 821 (1445)
Q Consensus 811 i~~~g~~~~~~ 821 (1445)
|+..|+.+|+.
T Consensus 226 ivfDg~~~el~ 236 (258)
T COG3638 226 IVFDGPASELT 236 (258)
T ss_pred EEEeCChhhhh
Confidence 99999998864
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=329.31 Aligned_cols=172 Identities=33% Similarity=0.510 Sum_probs=159.3
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC--hHhhhcce
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLRGRF 1300 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--~~~lR~~i 1300 (1445)
|+++|++++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 46999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
+|+||+|.+|.+ |+++|+... ||+|||||++||||++++|+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~p~ll 122 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMDPDVL 122 (178)
T ss_pred EEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCCCCEE
Confidence 999999998865 999998643 9999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCe
Q 000522 1380 CLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1432 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1432 (1445)
+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999987654 6899999999999985 89999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=323.94 Aligned_cols=216 Identities=27% Similarity=0.405 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1300 (1445)
-++++|++..|.+ -.+|+||||++++||.++++||||+||||++++|+|+.++.+|+|.++|.||...+++.. |..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999976 369999999999999999999999999999999999999999999999999999988765 6679
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCCC-ChHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~~-sd~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
+||||..-+|+. ||+|||..+... .+++-++. .+++..+-+ -|....+..+.+|||||+|.++|||||+.+||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999986 999999754321 11111110 011222222 45566677788999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCCC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAPN 1443 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~~ 1443 (1445)
+|+|||||.+|-+.--+.|.++|++..+ +.||+.|-++..... -+||.+||++|+|+.+|+++++.
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 9999999999999999999999988764 569999999999766 57999999999999999998874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=327.61 Aligned_cols=170 Identities=32% Similarity=0.556 Sum_probs=157.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998766 677889999
Q ss_pred EcCCCcccCc-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1445)
+||+|.+|.+ |+++|+. ||+|||||++||||++++|+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 78 LPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred EecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999987 9999973 999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeE
Q 000522 1382 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHL 1433 (1445)
Q Consensus 1382 DEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~v 1433 (1445)
||||++||..+.+.+.+.|++.. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999998764 4689999999999888 4899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=336.68 Aligned_cols=208 Identities=29% Similarity=0.407 Sum_probs=175.2
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCe---eCCCCChHhhhc
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL---NIINTPVRDLRG 1298 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~---di~~i~~~~lR~ 1298 (1445)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+.+|.|+..|++|+|.+||. |.++++.+ .+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 3788899888864 46899999999999999999999999999999999999999999999999 77774443 46
Q ss_pred ceEEEcCCCcccCc-cHHHhcCCCCC-----CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000522 1299 RFAVVPQSPFLFEG-SLRDNLDPFHM-----NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~g-TIReNLdp~~~-----~sd~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1368 (1445)
+||+|.|+..||.- ||++||.++-+ .++. ++.+.|+.|+| +-.-..-..+||||||||+||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL---------~~la~ryP~QLSGGQrQRVAL 148 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL---------EGLADRYPAQLSGGQRQRVAL 148 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc---------cchhhcCchhcChHHHHHHHH
Confidence 89999999999975 99999987642 1222 23333444433 333344567899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||...|++|+||||.++||.+-.+.+++-+++.. -++|+++|||+.+.+.+ ||||+||++|+|.+.|+|+|-
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999998888754 38999999999997765 899999999999999999774
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=349.06 Aligned_cols=210 Identities=21% Similarity=0.367 Sum_probs=173.2
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCeeCCCCChHhhh
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLR 1297 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~----~~G~I~IDG~di~~i~~~~lR 1297 (1445)
.++++|++++| . .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cceEEEcCCCc-ccC--ccHHHhcCC----CC-CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000522 1298 GRFAVVPQSPF-LFE--GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1298 ~~i~~VpQdp~-lF~--gTIReNLdp----~~-~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1369 (1445)
+.++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+++.+. ++.++.....||+|||||++||
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA------ARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh------hhhhhcCCcccCHHHHHHHHHH
Confidence 67999999985 343 477777532 11 1233445555555544221 1245666778999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999988643 7899999999999875 899999999999999987653
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=339.21 Aligned_cols=204 Identities=25% Similarity=0.398 Sum_probs=170.7
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCC----ChHhhhc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRG 1298 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~lR~ 1298 (1445)
+++ |++++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 345 899999753 34 99999999 99999999999999999999999999999999999998643 3345788
Q ss_pred ceEEEcCCCcccCc-cHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1299 RFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~g-TIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+++|+||++.+|++ |+++|+..... ..+++ .+....+.++.+|++.........||+|||||++||||++++|
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999864 99999974321 11111 1112334455557776677777899999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999987642 7899999999999865 8999999999999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=341.31 Aligned_cols=209 Identities=31% Similarity=0.482 Sum_probs=184.8
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------e
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 673 (1445)
+++|+++.|+.. ..+++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 2 EFENVTFAYDPG-----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred EEEEEEEEeCCC-----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 578899988531 2359999999999999999999999999999999999999999999976 3
Q ss_pred EEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000522 674 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1445)
Q Consensus 674 i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~ 752 (1445)
++|++|+|++++.|++||+.++.. ...+...+.++.+++...+..+|.|.++.++.+..+||||||||++||||++.+|
T Consensus 77 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 77 IGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999999999999999998753 3344456677888898888999999999999999999999999999999999999
Q ss_pred CEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 753 ~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++.+.|+.+++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAA-LRD-VSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999888876 333 334789999999999998899999999999999998887654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=362.17 Aligned_cols=206 Identities=24% Similarity=0.364 Sum_probs=175.1
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCC----ChHhhhc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRG 1298 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~lR~ 1298 (1445)
+++ |++++|+.. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 l~~-~l~k~~~~~---~-~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---C-LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---E-EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 2 399999999999999999999999999999999999999999999998653 2445688
Q ss_pred ceEEEcCCCcccCc-cHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1299 RFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~g-TIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+++|+||++.+|+. |+++|+.+... ..++++.++++.+ |++........+||||||||++|||||+++|
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~---------gl~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL---------GIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc---------CCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999974 99999975422 2233444444444 5555555666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 99999999999999999999999987653 7899999999998866 899999999999999998654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=341.28 Aligned_cols=211 Identities=30% Similarity=0.482 Sum_probs=184.6
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------e
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 673 (1445)
+++|+++.|..... .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 2 ~i~~l~~~~~~~~~---~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 2 EFKNVSFRYPSRPD---VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred eEEEEEEecCCCCC---ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhh
Confidence 57888998864211 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000522 674 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1445)
Q Consensus 674 i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~ 752 (1445)
++|++|+|++++.|++||+.++.. ...+...+.++.+++...+..+|.|.++..+....+||||||||++||||++.+|
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 79 IGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999998999999998753 2344556677778888888899999888889999999999999999999999999
Q ss_pred CEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 753 ~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
++++|||||++||+...+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~-l~~-~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEA-LDR-AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999988876 433 236789999999999998999999999999999998877653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=360.81 Aligned_cols=188 Identities=27% Similarity=0.364 Sum_probs=159.5
Q ss_pred cceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------------eEEEEcCCCCCCCc-
Q 000522 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILSG- 686 (1445)
Q Consensus 625 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------------~i~y~~Q~p~l~~~- 686 (1445)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++|+.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 359999999999999999999999999999999999999999999876 49999999999975
Q ss_pred cHHHHHhcCCCC---Ch-h---hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcC
Q 000522 687 TIRDNILFGKNY---DP-Q---SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759 (1445)
Q Consensus 687 ti~~nI~~g~~~---~~-~---~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe 759 (1445)
||+|||.|+.++ +. + +..++++..+|+.. .+....+|||||||||+||||++.+|+|+||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999987432 22 2 33344455455332 355667999999999999999999999999999
Q ss_pred CCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHHHhc
Q 000522 760 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 760 ~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
|||+||+.+.+.+.+.+.......++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999998754321234789999999999865 5999999999999999999998754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=333.79 Aligned_cols=190 Identities=24% Similarity=0.333 Sum_probs=162.3
Q ss_pred cEEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCeeCCCCChHhh
Q 000522 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDL 1296 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~l 1296 (1445)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 5579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcceEEEcCCCcccCc-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000522 1297 RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1297 R~~i~~VpQdp~lF~g-TIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1375 (1445)
|++++|+||++.+|.+ |+++|+.+.... . . .+....||+|||||++||||++++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------~----~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K------------G----NEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c------------c----ccchhhCCHHHHHHHHHHHHHhhC
Confidence 8899999999988875 999999643110 0 1 223346999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEec-cChhHHh-hcCEEEEEeCCeEeeec
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA-HRISTVL-NMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1376 ~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~Ia-Hrl~ti~-~~DrI~Vl~~G~vvE~G 1437 (1445)
|+||||||||++||+++.+.+.+.|++..+ +.|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 137 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999988643 56766655 5556664 58999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=361.48 Aligned_cols=207 Identities=24% Similarity=0.385 Sum_probs=173.9
Q ss_pred EEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCC----hHhhhcceEE
Q 000522 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP----VRDLRGRFAV 1302 (1445)
Q Consensus 1227 nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~----~~~lR~~i~~ 1302 (1445)
|++++|+.. .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 24 999999999999999999999999999999999999999999999986542 3456889999
Q ss_pred EcCCCcccCc-cHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1445)
Q Consensus 1303 VpQdp~lF~g-TIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1445)
+||++.+|++ |+++|+.+... ....+. .....+.++.+|++...+.....||||||||++|||||+++|++||
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999986 99999975322 111111 1112334444577766677777899999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1381 LDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1381 LDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|++.
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999987643 7899999999999876 899999999999999987653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.88 Aligned_cols=182 Identities=29% Similarity=0.424 Sum_probs=161.5
Q ss_pred cEEEEEEEEEeCCC----CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCeeCCCCChHh
Q 000522 1222 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRD 1295 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~ 1295 (1445)
.|+++||+++|+.. ..++|+|+||+|++||+++|+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 257999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhcceEEEcCCCcccCc-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000522 1296 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1296 lR~~i~~VpQdp~lF~g-TIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1374 (1445)
+|++++++||++.+|.+ |+++|+.... .. . .||+|||||++||||+++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~---------~----------~LS~G~~qrv~laral~~ 128 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KL---------R----------GLSGGERKRVSIALELVS 128 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hh---------c----------cCCHHHHHHHHHHHHHHc
Confidence 78899999999998875 9999984210 00 0 699999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChh-HHh-hcCEEEEEeCCeEeeec
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVL-NMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1375 ~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~-ti~-~~DrI~Vl~~G~vvE~G 1437 (1445)
+|++++|||||++||..+.+.+.+.|++.. +++|+|+|+|+++ .+. -||+|++|++|++++.|
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999998764 4899999999997 454 48999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=347.27 Aligned_cols=214 Identities=21% Similarity=0.344 Sum_probs=177.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCee-----CCCCChHh-
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1295 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d-----i~~i~~~~- 1295 (1445)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999988 77766553
Q ss_pred ---hhcceEEEcCCCc--c-cCccHHHhcCC----CCCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000522 1296 ---LRGRFAVVPQSPF--L-FEGSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1364 (1445)
Q Consensus 1296 ---lR~~i~~VpQdp~--l-F~gTIReNLdp----~~~~sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQ 1364 (1445)
+|+.++++||+|. + +..|+.+|+.. .......+. ...+.+.++.+|++ +..+.....|||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 3467999999985 2 23588888732 111111111 12334556666775 5677778899999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|++++.|++++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998764 37899999999999985 89999999999999998754
Q ss_pred C
Q 000522 1442 P 1442 (1445)
Q Consensus 1442 ~ 1442 (1445)
.
T Consensus 236 ~ 236 (253)
T TIGR02323 236 V 236 (253)
T ss_pred H
Confidence 3
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=332.54 Aligned_cols=182 Identities=23% Similarity=0.335 Sum_probs=161.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCeeCCCCChHhh-hcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDL-RGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl--~~~~~G~I~IDG~di~~i~~~~l-R~~ 1299 (1445)
++++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999998876654 556
Q ss_pred eEEEcCCCcccCc-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
++|+||+|.+|++ |+++|++ ....+||+|||||++||||++++|+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~---------------------------------~~~~~LS~G~~qrv~laral~~~p~i 125 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR---------------------------------YVNEGFSGGEKKRNEILQLLLLEPDL 125 (200)
T ss_pred EEEeecChhhccCccHHHHHh---------------------------------hccccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999986 5666550 01136999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh--hcCEEEEEeCCeEeeecCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL--NMDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~--~~DrI~Vl~~G~vvE~G~p 1439 (1445)
++|||||++||..+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 126 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 126 AILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 99999999999999999999998764 3789999999999998 5899999999999999843
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=328.87 Aligned_cols=172 Identities=30% Similarity=0.502 Sum_probs=156.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh-Hhhhcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1300 (1445)
.++++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +..|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988764 4568899
Q ss_pred EEEcCCC---ccc-CccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1301 AVVPQSP---FLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1301 ~~VpQdp---~lF-~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+|+||++ .++ ..|++||+.+... ||+|||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~al~~~p 123 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARWLARDP 123 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHHHccCC
Confidence 9999995 344 5799999864310 9999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeE
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1433 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~v 1433 (1445)
++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 124 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999998764 47999999999999987 899999999985
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=336.96 Aligned_cols=450 Identities=15% Similarity=0.170 Sum_probs=316.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh--hH---HHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000522 338 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD--GE---IQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY 411 (1445)
Q Consensus 338 ~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~--g~---i~nlms~D~~~i~~~~~-~~~~~~~~p~~i~i~~~ 411 (1445)
...|...++..+.|..|+..+.+|-|.-....+-.... +. .-..+..|+..+.+... ....+..+.+.++.-..
T Consensus 105 ~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 105 AQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999877543322111 11 22477788877766433 33344445555544455
Q ss_pred HHhhHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCch
Q 000522 412 LLYTQVK---------------FAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWE 476 (1445)
Q Consensus 412 lL~~~lg---------------~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e 476 (1445)
.||...| ..+.+.++.+++...+..+++|..-+...+..+.-..--.....+..+...|-+|+.|
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCc
Confidence 5663333 2222222233333333334444444443333333333334556788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 000522 477 QIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW----ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSF 552 (1445)
Q Consensus 477 ~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~----~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l 552 (1445)
+...+++++.-..=++..++......-...+. .++. +++.+ .++=....++++-+.+.++-..|+.+...++-+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~l-i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLPIL-IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHH-hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777654433333332222211111111 1111 11111 111124577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC---cchhhhhhcCCCCcccCCCc-cCCCCCceEEEEccEEecccCCcccccccee
Q 000522 553 PWVINGLIDAFISIRRLTRFLGCSE---YKHELEQAANSPSYISNGLS-NFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 628 (1445)
Q Consensus 553 ~~~i~~~~~a~~s~~Ri~~fL~~~e---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~ 628 (1445)
...++.+.+=+++..|+.+|-..-+ .++.. +... .... .....+..|.++|++..-+.. ...++
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~------~~~~-~~~~~~~~~~~~~i~~~nl~l~~p~~-----~~ll~ 410 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEK------PART-GRRIDFDDNADHGITLENLSLRTPDG-----QTLLS 410 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccc------cCcc-cccccccccccceeEEeeeeEECCCC-----Ceeec
Confidence 9999999999999999999985322 11100 0000 0000 000115789999999986543 24599
Q ss_pred eeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEc-C-eEEEEcCCCCCCCccHHHHHhcCC---CCChhhH
Q 000522 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS-G-SIAYVPQVPWILSGTIRDNILFGK---NYDPQSY 703 (1445)
Q Consensus 629 ~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~-~-~i~y~~Q~p~l~~~ti~~nI~~g~---~~~~~~~ 703 (1445)
+.||++++|+-+.|.|+||||||||+++|.|..|--+|+|... + .+-|+||.|.+..||.||-|++.. +++++.+
T Consensus 411 ~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred cceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 9999999999999999999999999999999999999999886 3 489999999999999999999964 2778999
Q ss_pred HHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccC
Q 000522 704 SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783 (1445)
Q Consensus 704 ~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~ 783 (1445)
.+++..|+|.+-.+.+.+-+ .-...||||||||+++||.++++|++++|||.|||||++++..+++. +.. .+.
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~-~lp 563 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKE-ELP 563 (604)
T ss_pred HHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHh-hCC
Confidence 99999999998887765432 24568999999999999999999999999999999999999999987 444 467
Q ss_pred CceEEEEccCchhhhhCCEEEEEeC
Q 000522 784 QKTRILCTHNVQAISAADMVVVMDK 808 (1445)
Q Consensus 784 ~~t~ilvth~~~~l~~~d~i~~l~~ 808 (1445)
+.|+|-|.|+.......++.+.+.+
T Consensus 564 ~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 564 DATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred CCEEEEeccchhhHHHHhhheeecc
Confidence 8899999999988887777666643
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=357.50 Aligned_cols=202 Identities=28% Similarity=0.422 Sum_probs=170.2
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------e
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1445)
.++++|+++.|+.+ ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGK-----TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCC-----CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 37899999998421 2359999999999999999999999999999999999999999999987 4
Q ss_pred EEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
||||+|++.+|. .||+|||.|+.. .+. ++.+++++..+|..... ....+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMG 146 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHH
Confidence 999999999996 599999998743 222 34556677777754443 34458999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHHHhc
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
||++.+|+++|||||||+||+.+.+.+.+.+ .... ..+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999888763 3212 23789999999998765 4999999999999999999998654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=327.33 Aligned_cols=177 Identities=32% Similarity=0.502 Sum_probs=159.1
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEE
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1445)
+++||+++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999964 4699999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000522 1304 PQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1383 (1445)
Q Consensus 1304 pQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDE 1383 (1445)
|| +++.+++.+ .....+.+||+|||||++||||++++|+++||||
T Consensus 79 ~q--------------------------~l~~~gl~~---------~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 79 PQ--------------------------ALELLGLAH---------LADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred HH--------------------------HHHHcCCHh---------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99 455555543 3344566899999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHh-hcCEEEEEeCCeEeeec
Q 000522 1384 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1384 aTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G 1437 (1445)
||++||.++.+.+.+.|++..+ ++|+|++||+++.+. -||++++|++|++++.|
T Consensus 124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999987654 789999999999985 58999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=331.17 Aligned_cols=181 Identities=23% Similarity=0.371 Sum_probs=160.4
Q ss_pred cEEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCeeCCCCChHhhh
Q 000522 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR 1297 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR 1297 (1445)
.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999742 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cceEEEcCCCcccCc-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1298 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1298 ~~i~~VpQdp~lF~g-TIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+++++++|+|.+|.+ |+++|+.... .++ +||||||||++||||++++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~----------------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR----------------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh----------------------cCCHHHhHHHHHHHHHhcCC
Confidence 899999999988875 9999986310 000 69999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhH--HhhcCEEEEEeC-CeEeeec
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILDH-GHLPHCG 1437 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~t--i~~~DrI~Vl~~-G~vvE~G 1437 (1445)
++|+|||||++||.++.+.+.+.|++.. +++|+|+|||+++. ...||+|++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999998764 48999999999984 456899999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=351.85 Aligned_cols=209 Identities=27% Similarity=0.427 Sum_probs=171.5
Q ss_pred CCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1445)
Q Consensus 602 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------- 672 (1445)
.+..++++|++|.|+.... ...++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 4457999999999964211 113469999999999999999999999999999999999999999998864
Q ss_pred --------------------eEEEEcCCC--CCCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCC
Q 000522 673 --------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGD 723 (1445)
Q Consensus 673 --------------------~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~gd 723 (1445)
.|+||+|+| ++++.||+|||.|+.. .+.+ +..+.++.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------- 167 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD--------- 167 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh---------
Confidence 279999998 7899999999998742 2222 2333444444432
Q ss_pred cccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCE
Q 000522 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADM 802 (1445)
Q Consensus 724 ~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~ 802 (1445)
...++.+.+||||||||++||||+..+|+++||||||++||+.+.+.+++. +.....+++|+|++||+++.+. .||+
T Consensus 168 -~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~-L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 168 -SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL-ILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred -hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 224667889999999999999999999999999999999999999988876 3321235789999999999875 5999
Q ss_pred EEEEeCCEEEEecCHhHHHh
Q 000522 803 VVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 803 i~~l~~G~i~~~g~~~~~~~ 822 (1445)
|++|++|++++.|+++++..
T Consensus 246 i~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 246 VIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEEECCEEEEeCCHHHHhc
Confidence 99999999999999998754
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=334.06 Aligned_cols=205 Identities=34% Similarity=0.467 Sum_probs=180.5
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|... . .++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQ-E---IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCC-C---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 37789999998532 1 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000522 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~ 750 (1445)
.++|++|+|++++.|++||+.++.. .++++..+.++.+++...++..|.|.+|.+.....+||||||||++||||+..
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 3899999999998999999988643 34556778888899988889999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEec
Q 000522 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g 815 (1445)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKER-LRQ-LLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999988876 333 33448999999999988779999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=354.72 Aligned_cols=203 Identities=28% Similarity=0.355 Sum_probs=168.8
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|+.... ..++|+|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~--~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTK--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCc--ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 678999999963211 12469999999999999999999999999999999999999999999875
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.|||++|++.+++ .|++|||.++.. .+. ++..++++..+|.+.. ......||||||||
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQR 148 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQR 148 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 4899999999985 699999987532 222 2344556666664322 34556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1445)
|+||||+..+|+++|||||||+||+.+.+.+++. +..-. ..+.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILEL-LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999998876 33211 237899999999999866 99999999999999999998
Q ss_pred HHh
Q 000522 820 LAV 822 (1445)
Q Consensus 820 ~~~ 822 (1445)
+..
T Consensus 228 v~~ 230 (343)
T TIGR02314 228 IFS 230 (343)
T ss_pred HHc
Confidence 864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=320.35 Aligned_cols=164 Identities=33% Similarity=0.449 Sum_probs=151.0
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++++|+.+ +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 46999999999999999999999999999999999999999999999873 68999
Q ss_pred EcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1303 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
+||+|.++++|++||+... ....||+|||||++||||++++|++++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred ECCCCccccccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999642 13479999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCCe
Q 000522 1383 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G~ 1432 (1445)
|||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999876 689999999999888899999999864
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=302.40 Aligned_cols=198 Identities=24% Similarity=0.414 Sum_probs=172.2
Q ss_pred EeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCccc
Q 000522 1231 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1310 (1445)
Q Consensus 1231 ~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF 1310 (1445)
.|.....++|+|+||++++||.++|.||||||||||++.+.-+..|++|.++..|.|+++++++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHhcC-CC---CCCChH-HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccc
Q 000522 1311 EGSLRDNLD-PF---HMNDDL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385 (1445)
Q Consensus 1311 ~gTIReNLd-p~---~~~sd~-ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaT 1385 (1445)
.+||.+||- |+ +...|. .-.+-|+++++. ++.+..+-.+||||||||++|+|-|---|+||+|||+|
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~--------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP--------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCc--------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 999999985 33 222332 223334444433 23455566689999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhH-HhhcCEEEEEeCCeEeee
Q 000522 1386 ANVDAQTASILQNAISSEC--KGMTVITIAHRIST-VLNMDEILILDHGHLPHC 1436 (1445)
Q Consensus 1386 S~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~t-i~~~DrI~Vl~~G~vvE~ 1436 (1445)
|+||..+.+.|.+.|.+++ ++..++.|||+-+. ++.+||++-+..|++-|.
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 9999999999999999988 48899999999987 889999999999987554
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=333.15 Aligned_cols=193 Identities=28% Similarity=0.382 Sum_probs=162.7
Q ss_pred EEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh----Hhhhcce
Q 000522 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRGRF 1300 (1445)
Q Consensus 1225 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~----~~lR~~i 1300 (1445)
++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 469999999999999999999999999999999999999999999999999875542 2467889
Q ss_pred EEEcCCCcccC-ccHHHhcCCCCC---CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1301 AVVPQSPFLFE-GSLRDNLDPFHM---ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1301 ~~VpQdp~lF~-gTIReNLdp~~~---~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
++++|+|.+|+ .|++||+.+... .. ++++.++++. +|++...+....+||+|||||++|||||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~lS~G~~qr~~laral 149 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEK---------VGLNLKLKQKIYELSGGEQQRVALARAI 149 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---------cCchhhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999997 599999965211 11 2223333443 3555455555668999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhcCEEEEE
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1428 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl 1428 (1445)
+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||+|++|
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999998764 479999999999988889999885
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=344.85 Aligned_cols=207 Identities=25% Similarity=0.359 Sum_probs=170.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999632 469999999999999999999999999999999999999999999999998752 12234699
Q ss_pred EEcCCCcc---cCccHHHhcCCCC--------CC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000522 1302 VVPQSPFL---FEGSLRDNLDPFH--------MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1367 (1445)
Q Consensus 1302 ~VpQdp~l---F~gTIReNLdp~~--------~~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1367 (1445)
|+||+|.+ +..++++|+.... .. .++++.++++..+ ++........+||||||||++
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---------l~~~~~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVD---------MVEFRHRQIGELSGGQKKRVF 152 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcC---------ChhHhcCCcccCCHHHHHHHH
Confidence 99999865 4568999975321 00 1123344444444 443344455679999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1368 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1368 LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+++++ +|++++.|+|++.
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999998764 47899999999998764 8999777 8999999998764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=341.86 Aligned_cols=216 Identities=23% Similarity=0.320 Sum_probs=176.2
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEECCeeCCCCChHhhhc-
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDLRG- 1298 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl--~~~~~G~I~IDG~di~~i~~~~lR~- 1298 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999964 3699999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ceEEEcCCCcccCc-cHHHhcCCCCC----C---ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCC-CCChhHHHHHHH
Q 000522 1299 RFAVVPQSPFLFEG-SLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGI-SFSVGQRQLICL 1368 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~g-TIReNLdp~~~----~---sd~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~-~LSgGQrQrl~L 1368 (1445)
.++++||+|.+|++ |+++|+..... . .+.+-++..+ ...+.++.+|+. +..+.... .||||||||++|
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLE--IINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHH--HHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 48999999999987 78999753210 0 0100001001 122333334564 34444443 599999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh--cCEEEEEeCCeEeeecCCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~--~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
|||++++|+||||||||++||.++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+|+.
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999998764 48999999999999876 79999999999999999964
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=352.49 Aligned_cols=202 Identities=28% Similarity=0.411 Sum_probs=169.3
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 78 (351)
T PRK11432 5 NFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78 (351)
T ss_pred cEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 36889999999952 2359999999999999999999999999999999999999999999986
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHH
Q 000522 673 SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1445)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~l 744 (1445)
+||||+|++.+|+. ||+|||.|+.. .++ ++.+++++..++... .......|||||||||+|
T Consensus 79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaL 147 (351)
T PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVAL 147 (351)
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 59999999999965 99999998743 222 234455555555432 234557899999999999
Q ss_pred HHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHHHh
Q 000522 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 745 ARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
|||++.+|+++|||||||+||+.+.+.+.+. +.... ..++|+|+|||+.+.+. .||+|++|++|++.+.|+++++..
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988776 33211 23789999999999875 499999999999999999999865
Q ss_pred c
Q 000522 823 S 823 (1445)
Q Consensus 823 ~ 823 (1445)
.
T Consensus 227 ~ 227 (351)
T PRK11432 227 Q 227 (351)
T ss_pred C
Confidence 3
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=315.17 Aligned_cols=220 Identities=24% Similarity=0.352 Sum_probs=190.4
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcc
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGR 1299 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~ 1299 (1445)
+.+..+|+..+|.. .+|+++|||++++||.||+.||+|+||||.+.++.|+..|++|+|.+||.||..+|.+.- |-.
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 45788999999974 479999999999999999999999999999999999999999999999999999998764 445
Q ss_pred eEEEcCCCcccCc-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
|+|+||||.+|.+ ||+|||..--+..+.+.+.+-++..+.+.++.+.+...-...|.+||||||+|+-|||||..+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 9999999999987 999998644333322233344455556666666777777788889999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChh-HHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~-ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++||||.+++|+-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|...|+|++.
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence 99999999999999999999998764 5778999999965 7778999999999999999999875
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=338.44 Aligned_cols=198 Identities=26% Similarity=0.399 Sum_probs=170.4
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 4699999999999999999999999999999999999999999999987 35799
Q ss_pred EEcCCCcccC---ccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1302 VVPQSPFLFE---GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1302 ~VpQdp~lF~---gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
|+||+|.++. .|+++|+......+++++.++++.+++.+. .......||+|||||++||||++++|++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---------~~~~~~~LSgGq~qrv~laral~~~p~l 141 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL---------IDAPMQKLSGGETQRVLLARALLNRPQL 141 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHH---------HhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998765 389999754333455667777777766543 3334557999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+|++.
T Consensus 142 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 999999999999999999999987643 7999999999999865 899999965 79999988653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=305.28 Aligned_cols=193 Identities=25% Similarity=0.381 Sum_probs=167.7
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
|+|+|++-.|+.. .++|+||||+|++||++.++||||||||||+|+|.++..|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g-----~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 2 IRFENVSKAYPGG-----REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred eeehhhhhhcCCC-----chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 6789999988754 2349999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcCCCCCC-CccHHHHHhcCCCC---C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~-~~ti~~nI~~g~~~---~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
+||+|+|+--|. +-||.||+.|.... . +++..++++..+|.+....+|. .||||||||
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQR 145 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQR 145 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHH
Confidence 699999999866 45999999986432 2 3466778888999888888875 899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|+||||+..+|++||-||||.+|||..+..|++. +..--..|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~l-feeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL-FEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHH-HHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999999985 32223468899999999999987 5689999999998653
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.16 Aligned_cols=199 Identities=39% Similarity=0.692 Sum_probs=175.2
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1445)
.+.|+.|.|+.. ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGSG-----LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCCC-----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 456888888643 2359999999999999999999999999999999999999999998854
Q ss_pred ---eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000522 673 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly 749 (1445)
.++|++|+|.+++.|++||+.++.+++.++.+++++++++...++..|.|+++.++....+||||||||++||||++
T Consensus 77 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred hcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 38999999999999999999987666666778899999998888889999999999999999999999999999999
Q ss_pred cCCCEEEEcCCCcCcCHHHHHHHHHH-hhcCcccCCceEEEEccCchhhhhCCEEEEEeCCE
Q 000522 750 HGSDIYMLDDVLSAVDAQVARWILSN-AIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810 (1445)
Q Consensus 750 ~~~~illlDe~~s~lD~~~~~~i~~~-~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~ 810 (1445)
.+|+++||||||++||+.+.+.+++. ++.....++.|+|++||+.+.+..||++++|++|.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887762 22221224689999999999998899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=339.72 Aligned_cols=213 Identities=18% Similarity=0.273 Sum_probs=168.9
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCeeCCCCChHhhh-cc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR-GR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR-~~ 1299 (1445)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 36999999999999999999999999999999999995 69999999999999888776654 57
Q ss_pred eEEEcCCCcccCc-cHHHhcCCC-C---CCChHHHHHHHHHccH----HHHHHhCCCchh-hhcCC-CCCChhHHHHHHH
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPF-H---MNDDLKIWSVLEKCHV----KEEVEAVGLETF-VKESG-ISFSVGQRQLICL 1368 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~-~---~~sd~ei~~aL~~~~l----~~~i~~lgLdt~-v~e~G-~~LSgGQrQrl~L 1368 (1445)
+++++|+|.+++. |..+|+... . .....+ .++..++ .+.++.+|++.. ..... .+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE---PLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccc---cchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 9999999987765 544443210 0 000000 1111111 223333355321 22222 2699999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC-CcEEEEeccChhHHhh--cCEEEEEeCCeEeeecCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN--MDEILILDHGHLPHCGCAA 1440 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~-~~TvI~IaHrl~ti~~--~DrI~Vl~~G~vvE~G~p~ 1440 (1445)
|||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. +|+|++|++|++++.|+++
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999887643 7899999999999987 7999999999999999875
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=337.61 Aligned_cols=195 Identities=29% Similarity=0.368 Sum_probs=159.9
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEc-CCCcccC-ccH
Q 000522 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP-QSPFLFE-GSL 1314 (1445)
Q Consensus 1237 ~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp-Qdp~lF~-gTI 1314 (1445)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|+| |++.+|. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 6677764 599
Q ss_pred HHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHH
Q 000522 1315 RDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391 (1445)
Q Consensus 1315 ReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~ 1391 (1445)
++|+.... ..++++..+. ..+.++.+|++.........||+|||||++||||++.+|+||||||||++||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 99985422 1222222221 112233335554444455679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1392 TASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1392 te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999998764 37899999999998866 8999999999998875
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=336.63 Aligned_cols=192 Identities=28% Similarity=0.369 Sum_probs=160.3
Q ss_pred ceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCcccC-ccHHHhc
Q 000522 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNL 1318 (1445)
Q Consensus 1240 L~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~-gTIReNL 1318 (1445)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHH
Q 000522 1319 DPF-----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393 (1445)
Q Consensus 1319 dp~-----~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te 1393 (1445)
... ...++++..+ .+.+.++.+|++.........||||||||++|||||+++|++|||||||++||+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 642 1222222111 122334444665555556678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1394 SILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1394 ~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 99999998764 37899999999998875 89999999999999998644
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=336.21 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=164.0
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1445)
+++|+++.|.. .++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 2 ELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred eEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 57888998852 2359999999999999999999999999999999999999999998865
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC----CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 --SIAYVPQVPWILSG-TIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++|++|++.+++. |++||+.++.. .++ ++..++++.+++.... .....+||||||||
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 144 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKR 144 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHH
Confidence 38999999998876 99999987532 222 2344555665554322 33456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1445)
++||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999988876 332122 37899999999998775 99999999999999999888
Q ss_pred HHh
Q 000522 820 LAV 822 (1445)
Q Consensus 820 ~~~ 822 (1445)
+..
T Consensus 224 ~~~ 226 (235)
T cd03261 224 LRA 226 (235)
T ss_pred HcC
Confidence 753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=309.61 Aligned_cols=508 Identities=16% Similarity=0.144 Sum_probs=329.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000522 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGY-VLAIALGLTSILKSFFDTQYSFHLSKLK 347 (1445)
Q Consensus 269 l~~~l~~~~~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~-~l~~~l~~~~~~~~~~~~~~~~~~~r~~ 347 (1445)
+...++|.++|+++....+.++..... ..++-.+-+++-+......++ .+.+++.+..++.+.. ......-++
T Consensus 3 ~ll~llr~nr~~~i~~~a~s~a~g~~g---~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~i---s~lg~t~~g 76 (546)
T COG4615 3 LLLLLLRQNRWPFISVMALSLASGALG---IGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLI---SQLGLTTLG 76 (546)
T ss_pred hHHHHhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 345788899999888777666554433 333333333433311111111 1222222222222221 112223333
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 000522 348 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 427 (1445)
Q Consensus 348 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~p~~i~i~~~lL~~~lg~a~l~~~~~ 427 (1445)
..+-..+...+-+|.+.-+.....+..++.++.-++.|+..|...+..+.++.-+.+-+..+...|++.-+..++..++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444555567777777666667778899999999999997777777666555555555555555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000522 428 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWE--QIFSSWLMKTRSSEVKHLSTRKYLDAWC- 504 (1445)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e--~~~~~~i~~~R~~El~~~~~~~~~~~~~- 504 (1445)
+++.+..+.+...+..++.....+.-|+-.+..+.++.|-|.+|+..-- ..+.+.+... .+|.+. +..+...+.
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~-a~~~r~--~~~~~n~f~~ 233 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD-AQEYRH--HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc-hHHHHh--hhhhhhHHHH
Confidence 6777777888888888888888889999999999999999999986522 1122211110 111111 111111121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhh
Q 000522 505 VFFWATTPTLFSLFTFGLFALMGHQL-DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 583 (1445)
Q Consensus 505 ~~~~~~~~~~~~~~~f~~~~~~~~~L-t~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 583 (1445)
....+....+..++....|+...-.. +...+.|....+-.++.|+.++...+|.+..|.++++||.++=..|+..+- .
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~-~ 312 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF-P 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC-C
Confidence 11122223333444444444322222 223444544556678899999999999999999999999997664443221 0
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC
Q 000522 584 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~ 663 (1445)
..... ++-..++++|+.|+|... ++-+..||++|++||++.|+|.||||||||++.++|.++|
T Consensus 313 ~~q~~------------p~~~~lelrnvrfay~~~-----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P 375 (546)
T COG4615 313 RPQAF------------PDWKTLELRNVRFAYQDN-----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375 (546)
T ss_pred CCCcC------------CcccceeeeeeeeccCcc-----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC
Confidence 00001 223568999999999643 2458999999999999999999999999999999999999
Q ss_pred CCeEEEEcCe-------------EEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccC
Q 000522 664 THGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729 (1445)
Q Consensus 664 ~~G~i~~~~~-------------i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~ 729 (1445)
++|+|.++|+ ++-|+-+-|+|+. .+.++. -+++..++-++.-.+.... .+.+|.-+
T Consensus 376 qsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~-----ll~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs---- 445 (546)
T COG4615 376 QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ-----LLGPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS---- 445 (546)
T ss_pred CCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHh-----hhCCccCCChHHHHHHHHHHHHhhhh-cccCCccc----
Confidence 9999999983 2333444454432 222222 3455555555554444332 22233222
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCC
Q 000522 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 809 (1445)
Q Consensus 730 ~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G 809 (1445)
...||-|||.|+|+--|+..+.|||+|||=-+-=||+-++..++..+-.....|||++-||||-.+...|||++.+++|
T Consensus 446 -~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G 524 (546)
T COG4615 446 -NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNG 524 (546)
T ss_pred -ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcC
Confidence 2479999999999999999999999999999999999888877764322144699999999999999999999999999
Q ss_pred EEEEe
Q 000522 810 QVKWI 814 (1445)
Q Consensus 810 ~i~~~ 814 (1445)
++++.
T Consensus 525 ~~~e~ 529 (546)
T COG4615 525 QLSEL 529 (546)
T ss_pred ceeec
Confidence 99864
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=338.66 Aligned_cols=207 Identities=24% Similarity=0.365 Sum_probs=172.8
Q ss_pred EEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEE
Q 000522 1224 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1303 (1445)
Q Consensus 1224 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1303 (1445)
+++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|++++ +|+|.+||.++...+...+|+.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56788774 289999999999999999999999999999999999964 99999999999988888888899999
Q ss_pred cCCCcc-cCccHHHhcCCCCCC--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc------
Q 000522 1304 PQSPFL-FEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------ 1374 (1445)
Q Consensus 1304 pQdp~l-F~gTIReNLdp~~~~--sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr------ 1374 (1445)
||++.+ +..|+++|+..+... +.++. .....+.++.+|++.........||+|||||++||||+++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 999854 567999999764321 11111 1122344444566655666677899999999999999997
Q ss_pred -CCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1375 -SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1375 -~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+. .||+|++|++|++++.|++++.
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 679999999999999999999999998764 4789999999999775 4899999999999999987643
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=334.33 Aligned_cols=214 Identities=25% Similarity=0.425 Sum_probs=170.8
Q ss_pred EEEEEEEEEeCCCC--CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-C----CCcEEEECCeeCCCCChHh
Q 000522 1223 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-I----CGGQILVDGLNIINTPVRD 1295 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-~----~~G~I~IDG~di~~i~~~~ 1295 (1445)
++++|++..|.... ..+++||||+|++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+-+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 58899999997543 469999999999999999999999999999999999998 3 5799999999999999875
Q ss_pred h---h-cceEEEcCCCcc-cCc--cHHHhc----CCCCCC-C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCC
Q 000522 1296 L---R-GRFAVVPQSPFL-FEG--SLRDNL----DPFHMN-D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1359 (1445)
Q Consensus 1296 l---R-~~i~~VpQdp~l-F~g--TIReNL----dp~~~~-s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS 1359 (1445)
+ | +.|++|||||.- |+- ||.+-+ ...... + .++..+.|+.+++.+- +..+..-...||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~------~~~~~~YPhelS 155 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP------ERRLKSYPHELS 155 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH------HHHHhhCCcccC
Confidence 4 3 479999999951 221 333322 111111 1 1123333444433221 124556677899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeee
Q 000522 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHC 1436 (1445)
Q Consensus 1360 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~ 1436 (1445)
||||||+.||-|++.+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||+||.+|+|||.
T Consensus 156 GGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred CcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe
Confidence 999999999999999999999999999999999999999998765 49999999999998875 899999999999999
Q ss_pred cCCCCC
Q 000522 1437 GCAAAP 1442 (1445)
Q Consensus 1437 G~p~~~ 1442 (1445)
|+.++.
T Consensus 236 g~~~~i 241 (316)
T COG0444 236 GPVEEI 241 (316)
T ss_pred CCHHHH
Confidence 997654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=351.85 Aligned_cols=203 Identities=26% Similarity=0.380 Sum_probs=170.9
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1445)
...++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN 85 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 345899999999852 2359999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcCCCCCCCc-cHHHHHhcCCCC---Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000522 673 -SIAYVPQVPWILSG-TIRDNILFGKNY---DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~---~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~ 743 (1445)
.+|||+|++.+|.. ||+|||.|+... ++ ++.+++++..++....+. ...+|||||||||+
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~p~~LSgGq~QRVa 154 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-----------KPHQLSGGQQQRVA 154 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 39999999999865 999999987532 22 244566666666544443 44589999999999
Q ss_pred HHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHHH
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
|||||+.+|+++|||||||+||+...+.+.+. +.... ..+.|+|+|||+.+.+. .||+|++|++|+|.+.|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999998888776 33211 23789999999999865 59999999999999999999986
Q ss_pred hc
Q 000522 822 VS 823 (1445)
Q Consensus 822 ~~ 823 (1445)
..
T Consensus 234 ~~ 235 (375)
T PRK09452 234 EE 235 (375)
T ss_pred hC
Confidence 54
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=350.68 Aligned_cols=201 Identities=29% Similarity=0.403 Sum_probs=169.8
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------e
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1445)
.++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|+|..+|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 4789999999853 2359999999999999999999999999999999999999999999986 4
Q ss_pred EEEEcCCCCCCC-ccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
+|||+|++-+|+ .||+|||.|+.. .+ .++.+++++..+|+... .....+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHH
Confidence 999999999996 599999998743 22 23455566666654332 355679999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHHHhc
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
|||+.+|+++|||||||+||+.+.+++.+.+ ..... .+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L-~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEI-RQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999888763 22112 3789999999999865 4999999999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=343.05 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=170.3
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|+.... ..+.+|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 678999999964211 112469999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 673 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 ----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
.++||+|+| .+++.||.|||.|+.. .++ +++.++++..+|..++ ......+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 379999998 7888999999998742 222 3456666666664332 2345679999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHh
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1445)
||++||||++.+|+++||||||++||+.+.+.+.+. +..-..+++|+|++||+++.+. .||+|++|++|+++++|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999888875 3321234789999999999886 49999999999999999999
Q ss_pred HHHh
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~~~~ 822 (1445)
++..
T Consensus 230 ~~~~ 233 (288)
T PRK13643 230 DVFQ 233 (288)
T ss_pred HHHc
Confidence 8754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=369.82 Aligned_cols=214 Identities=26% Similarity=0.388 Sum_probs=180.6
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCeeCCCCChHh-hhc
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRG 1298 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di~~i~~~~-lR~ 1298 (1445)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5899999999963 4699999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ceEEEcCCCcccCc-cHHHhcCCCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1299 RFAVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1299 ~i~~VpQdp~lF~g-TIReNLdp~~~------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
+++||||+|.+|.. |++||+.+... .+.++..+ .+.+.++.+|++........+||||||||++||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 89999999988875 99999975421 11111111 12334444566555555566899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|+.+|+|||||||||+||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999998763 47899999999999875 899999999999999998765
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=342.95 Aligned_cols=205 Identities=27% Similarity=0.419 Sum_probs=170.3
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|++++|+.... ...++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999964211 113469999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 673 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 ----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
.|+||+|+| .+++.||+|||.|+.. .+. ++.+++++.++|..++. .....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHH
Confidence 389999998 5888899999998632 222 34566777777754332 345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCH
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~ 817 (1445)
||++||||++.+|+++||||||++||+.+.+.+++. +..... .|.|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999988876 332112 37899999999998765 999999999999999999
Q ss_pred hHHHh
Q 000522 818 ADLAV 822 (1445)
Q Consensus 818 ~~~~~ 822 (1445)
+++..
T Consensus 231 ~~~~~ 235 (290)
T PRK13634 231 REIFA 235 (290)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=341.65 Aligned_cols=207 Identities=28% Similarity=0.441 Sum_probs=169.9
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.... ..+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4789999999964211 113469999999999999999999999999999999999999999998865
Q ss_pred ---eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000522 673 ---SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1445)
Q Consensus 673 ---~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkq 740 (1445)
.||||+|+| .+++.|++|||.|+.. .++ ++.+++++.++|.. .+........|||||||
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKR 151 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHH
Confidence 389999998 5778999999998642 232 23455666666641 11234566799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHh
Q 000522 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 741 Rv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1445)
|++||||++.+|+++||||||++||+.+.+.+++. +..... .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK-IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999988876 333122 3789999999999875 59999999999999999998
Q ss_pred HHHh
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~~~~ 822 (1445)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=311.46 Aligned_cols=159 Identities=32% Similarity=0.505 Sum_probs=148.1
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh-HhhhcceE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~ 1301 (1445)
|+++|++++|+. .++++|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++...+. +..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 478999999964 369999999999999999999999999999999999999999999999999988875 45678899
Q ss_pred EEcCCCcccCccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000522 1302 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1445)
Q Consensus 1302 ~VpQdp~lF~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1445)
++|| ||+|||||++||||++++|++++|
T Consensus 79 ~~~q----------------------------------------------------LS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 79 MVYQ----------------------------------------------------LSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred EEEe----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999 999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEee
Q 000522 1382 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPH 1435 (1445)
Q Consensus 1382 DEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE 1435 (1445)
||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999998763 48899999999998865 89999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=340.46 Aligned_cols=204 Identities=29% Similarity=0.401 Sum_probs=170.4
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTFKYKEDQE---KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEEEcCCCCc---CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 4789999999964211 2369999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.++|++|+|. ++..||+|||.|+.. .++ ++..++++..+|+...+ ....+||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv 149 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRV 149 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHH
Confidence 4899999984 566799999998742 232 34566777777754333 34468999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
+||||++.+|+++||||||++||+.+.+.+++. +..... .|+|+|++||+++.+..||+|++|++|+++..|+++++.
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKT-IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999998888875 333122 378999999999998789999999999999999998875
Q ss_pred hc
Q 000522 822 VS 823 (1445)
Q Consensus 822 ~~ 823 (1445)
..
T Consensus 229 ~~ 230 (279)
T PRK13650 229 SR 230 (279)
T ss_pred cC
Confidence 43
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=341.23 Aligned_cols=206 Identities=23% Similarity=0.389 Sum_probs=168.4
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.... ...++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999964221 113469999999999999999999999999999999999999999998875
Q ss_pred -----eEEEEcCCC--CCCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
.||||+|+| .+++.|++|||.|+.. ++.+ +..+.++.++|..+. .+..+.+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQ 150 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHH
Confidence 379999998 5888899999998632 2322 234455555553221 235667999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecC
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~ 816 (1445)
|||++||||++.+|+++||||||++||+.+.+.+.+. +.... ..|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL-LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999988875 33211 24789999999999876 599999999999999999
Q ss_pred HhHHHh
Q 000522 817 SADLAV 822 (1445)
Q Consensus 817 ~~~~~~ 822 (1445)
++++..
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=332.02 Aligned_cols=197 Identities=28% Similarity=0.394 Sum_probs=162.5
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCc-----cCCCeEEEEcC--------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-----MLTHGSIHASG-------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~-----~~~~G~i~~~~-------- 672 (1445)
++++|+++.|.. +++|+|+||++++||+++|+|+||||||||+++|+|.+ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 357889998853 23599999999999999999999999999999999999 99999998865
Q ss_pred -------eEEEEcCCCCCCCccHHHHHhcCCCC----C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000522 673 -------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1445)
Q Consensus 673 -------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGG 737 (1445)
.++|++|++.+++.|++||+.++... + +++..++++.+++...+...++ +.+||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG 145 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGG 145 (227)
T ss_pred HHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHH
Confidence 38999999998878999999875321 1 2344556666666543332211 4689999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecC
Q 000522 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 738 QkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1445)
||||++||||++.+|++++|||||++||+.+.+.+++. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 146 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL-IAE-LKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999988876 333 3333899999999998765 99999999999999988
Q ss_pred HhH
Q 000522 817 SAD 819 (1445)
Q Consensus 817 ~~~ 819 (1445)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=347.57 Aligned_cols=201 Identities=32% Similarity=0.442 Sum_probs=168.1
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------e
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1445)
.++++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 3678999998853 2359999999999999999999999999999999999999999999976 4
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCCC-------Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 674 IAYVPQVPWILSG-TIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
++||+|++.+++. |++|||.|+... +. ++.++.++..+|.... ......||||||||
T Consensus 76 i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QR 144 (353)
T PRK10851 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQR 144 (353)
T ss_pred EEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 9999999999975 999999987431 21 2344556666554322 34556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1445)
|+||||++.+|+++|||||||+||+.+.+.+.+. +..... .+.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999888876 332122 36899999999998665 99999999999999999999
Q ss_pred HHhc
Q 000522 820 LAVS 823 (1445)
Q Consensus 820 ~~~~ 823 (1445)
+...
T Consensus 224 i~~~ 227 (353)
T PRK10851 224 VWRE 227 (353)
T ss_pred HHhC
Confidence 8654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=348.83 Aligned_cols=202 Identities=27% Similarity=0.383 Sum_probs=170.3
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCC--eEEEEcC---------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG--------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~--G~i~~~~--------- 672 (1445)
+.++++|+++.|.. . .+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---N---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred eEEEEEEEEEEECC---e---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH
Confidence 45889999999853 2 35999999999999999999999999999999999999999 9999876
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 --SIAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.|+||+|++.+|.. ||+|||.|+.. .+ +++.+++++..+|+...+ ....+|||||||||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHH
Confidence 49999999999865 99999998642 22 134556666666654333 44568999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccC--CceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~--~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1445)
+|||||..+|+++|||||||+||+...+.+.+.+ .....+ |.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEI-AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH-HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999998888763 321222 6899999999998655 99999999999999999999
Q ss_pred HHhc
Q 000522 820 LAVS 823 (1445)
Q Consensus 820 ~~~~ 823 (1445)
+...
T Consensus 226 ~~~~ 229 (362)
T TIGR03258 226 LYDA 229 (362)
T ss_pred HHhC
Confidence 8654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=341.39 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=169.0
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.... ....+|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 3788999999964321 112469999999999999999999999999999999999999999998752
Q ss_pred -------------------------eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhh
Q 000522 673 -------------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISL 718 (1445)
Q Consensus 673 -------------------------~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~ 718 (1445)
.||||+|+| .+++.||+|||.|+.. .++ ++..++++.++|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-- 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY-- 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh--
Confidence 379999987 5778899999998742 222 3445666666664322
Q ss_pred ccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh
Q 000522 719 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798 (1445)
Q Consensus 719 ~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~ 798 (1445)
.+....+||||||||++||||++.+|+++||||||++||+...+.+.+. +.....+|+|+|++||+++.+.
T Consensus 159 --------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 159 --------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred --------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHHHHH
Confidence 2355679999999999999999999999999999999999998888875 3321234789999999999865
Q ss_pred -hCCEEEEEeCCEEEEecCHhHHHh
Q 000522 799 -AADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 799 -~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
.||+|++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 599999999999999999988754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=325.24 Aligned_cols=194 Identities=25% Similarity=0.332 Sum_probs=165.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 46999999999999999999999999999999999999999999999999987654 456789999
Q ss_pred EcCCCcccC-ccHHHhcCCCCC----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~~----~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
++|++.+++ .|++||+..... .+++++.++++..++.+ ........||+|||||++||||++++|+
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG---------FEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH---------HhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998886 599999964321 23345555666655543 3344455799999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhc-CEEEEE
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILIL 1428 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~-DrI~Vl 1428 (1445)
||+|||||++||+++.+.+.+.|++.. +++|+|+|||+++.+..| +|++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998763 478999999999999776 788776
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=331.25 Aligned_cols=199 Identities=33% Similarity=0.455 Sum_probs=164.7
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------e
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1445)
.++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (239)
T cd03296 2 SIEVRNVSKRFGD---F---VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75 (239)
T ss_pred EEEEEeEEEEECC---E---EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccc
Confidence 3678999999853 2 359999999999999999999999999999999999999999999875 4
Q ss_pred EEEEcCCCCCCC-ccHHHHHhcCCCC-------Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 674 IAYVPQVPWILS-GTIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 674 i~y~~Q~p~l~~-~ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
++|++|+|.++. .|++||+.++... +. ++.++.++.+++... ......+||||||||
T Consensus 76 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 144 (239)
T cd03296 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQR 144 (239)
T ss_pred eEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHH
Confidence 899999999886 5999999876321 11 223444555555322 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1445)
++||||++.+|+++||||||++||+++.+.+.+. +..... +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 145 VALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999988875 332122 37899999999998765 99999999999999999888
Q ss_pred HH
Q 000522 820 LA 821 (1445)
Q Consensus 820 ~~ 821 (1445)
+.
T Consensus 224 ~~ 225 (239)
T cd03296 224 VY 225 (239)
T ss_pred Hh
Confidence 74
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=365.76 Aligned_cols=213 Identities=24% Similarity=0.391 Sum_probs=180.0
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhh-cce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR-GRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR-~~i 1300 (1445)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+....+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 4699999999999999999999999999999999999999999999999999887776655 469
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
+|+||++.+|.+ |+++|+.+.....+ +..+ .+.+.++.+|++.........||||||||++|||||+++|+||
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASMQ-----KMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHHH-----HHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999998876 99999975432111 1111 1223344446654455555689999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1380 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|++++.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999998763 47899999999999865 899999999999999988653
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=350.43 Aligned_cols=200 Identities=28% Similarity=0.410 Sum_probs=168.6
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------e
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 673 (1445)
.++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCC
Confidence 3789999999852 2359999999999999999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
|+||+|++.++.. ||+|||.|+.. .+ .++.+++++.+++.... .....+|||||||||+||
T Consensus 77 i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIG 145 (369)
T ss_pred EEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999999999865 99999998643 22 23456667777665433 334468999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHh
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
||++.+|+++|||||||+||+...+.+.+. +..... .+.|+|++||+++.+.. ||+|++|++|++.+.|+++++..
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999888775 332122 37899999999998765 99999999999999999998864
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=322.57 Aligned_cols=189 Identities=29% Similarity=0.438 Sum_probs=161.3
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|+... .++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDL----PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCC----cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 4689999999986321 2359999999999999999999999999999999999999999999875
Q ss_pred --eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000522 673 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~ 750 (1445)
.|+||+|+|.++++|++||+.+...++++. +.+++. ++++...||||||||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~---~~~~l~---------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEE---IYGALR---------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHH---HHHHhh---------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 499999999999999999997654443322 222221 345778999999999999999999
Q ss_pred CCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecC
Q 000522 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1445)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..+|++++|++|++.+.|+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKT-IRE-EFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999998888776 333 345789999999999988899999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=366.22 Aligned_cols=214 Identities=20% Similarity=0.287 Sum_probs=178.9
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHh-hhcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1300 (1445)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999997665544 36789
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~-------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
+|+||++.+|.. |++||+.+... .+..+..+ ...+.++.+|++........+||||||||++|||||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999999988875 99999975321 11111111 123334444665544555568999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++++.
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999999998753 47899999999999875 799999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=367.65 Aligned_cols=214 Identities=19% Similarity=0.302 Sum_probs=179.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1300 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988776554 4679
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC-------C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM-------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~-------~---sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1369 (1445)
+||||++.+|.+ |+++|+..... . +.++..+ .+.+.++.+|++........+||||||||++||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 999999998876 99999964311 0 1111111 123334444665445555568999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1370 RALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|+|++.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999999999999998753 47999999999999875 899999999999999998764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=372.92 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=147.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHh------cCC---CCCCcEEEECC-------
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLT---PICGGQILVDG------- 1285 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~------rl~---~~~~G~I~IDG------- 1285 (1445)
.++++|++. ..|+|+|++|++||.+||+|.+|||||||+.-++ ++. .+..+...++|
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 477888752 2599999999999999999999999999998764 211 12233333333
Q ss_pred -----eeCCCCC----------hHhhhcceE---------EEcCCCcccC-----------ccHHHhcCCCCC-------
Q 000522 1286 -----LNIINTP----------VRDLRGRFA---------VVPQSPFLFE-----------GSLRDNLDPFHM------- 1323 (1445)
Q Consensus 1286 -----~di~~i~----------~~~lR~~i~---------~VpQdp~lF~-----------gTIReNLdp~~~------- 1323 (1445)
.++..-+ .+.+|.-.+ +-++.-.+.+ |+++.|+.+...
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 3332111 123333332 2222222221 455555543211
Q ss_pred -----C------------ChH-----HHHHHHHHc----cH---HHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1324 -----N------------DDL-----KIWSVLEKC----HV---KEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1324 -----~------------sd~-----ei~~aL~~~----~l---~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
+ +-. .+.++++-. ++ .+.++.+||+. .++.....||||||||+.|||||+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~ 846 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELS 846 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHh
Confidence 0 101 122222221 11 12333448875 467777899999999999999999
Q ss_pred cCC---CEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhcCEEEEE------eCCeEeeecCCCCC
Q 000522 1374 KSS---KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 r~~---~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl------~~G~vvE~G~p~~~ 1442 (1445)
++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|++.
T Consensus 847 ~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el 925 (943)
T PRK00349 847 KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEV 925 (943)
T ss_pred cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHH
Confidence 999 9999999999999999999999998764 589999999999999999999999 79999999998754
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=337.73 Aligned_cols=199 Identities=29% Similarity=0.391 Sum_probs=167.8
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.. .++|+|+||++++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKDG-----TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCCC-----CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 47899999998521 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCC--CCCCccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 -SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 -~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.++|++|+| .+++.|++||+.|+.. .+ ++++.++++.++|...... ....||||||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv 147 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRV 147 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHH
Confidence 489999998 5788899999998632 22 2345667777777544332 3358999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
+||||+..+|+++||||||++||+.+.+.+++. +.....+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI-LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999988876 3331234789999999999985 5999999999999999998654
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=332.13 Aligned_cols=203 Identities=22% Similarity=0.291 Sum_probs=170.3
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc---CCCeEEEEcC---------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM---LTHGSIHASG--------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~---~~~G~i~~~~--------- 672 (1445)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 4678999999852 235999999999999999999999999999999999974 6899999876
Q ss_pred ----eEEEEcCCCCCCCccHHHHHhcCCCC---------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 673 ----SIAYVPQVPWILSGTIRDNILFGKNY---------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 ----~i~y~~Q~p~l~~~ti~~nI~~g~~~---------~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
.++|++|+|.+++.|++||+.++... ++++..++++.+++...+.. ...+.+.+||||||
T Consensus 76 ~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 148 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQ 148 (246)
T ss_pred HHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHH
Confidence 48999999999999999999875321 12245667777777654432 23456789999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHh
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~ 818 (1445)
||++||||++++|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL-LKE-LSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999998888776 433 3457899999999998865 9999999999999999988
Q ss_pred HHHh
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~~~~ 822 (1445)
++..
T Consensus 227 ~~~~ 230 (246)
T PRK14269 227 EFFE 230 (246)
T ss_pred HHHh
Confidence 8753
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=320.92 Aligned_cols=194 Identities=23% Similarity=0.336 Sum_probs=165.2
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999987643 567899999
Q ss_pred EcCCCccc-CccHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000522 1303 VPQSPFLF-EGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1445)
Q Consensus 1303 VpQdp~lF-~gTIReNLdp~~~-~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1380 (1445)
+||++.++ ..|+++|+..... ..++++.++++..++.+. ......+||+|||||++||||++++|++||
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF---------EDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh---------hcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999876 4799999975432 345566667777666533 223345799999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEE
Q 000522 1381 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILIL 1428 (1445)
Q Consensus 1381 LDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl 1428 (1445)
|||||++||+.+.+.+.+.|++.. +++|+|+|||+...+. .||+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999998753 4899999999877555 57999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=326.63 Aligned_cols=191 Identities=30% Similarity=0.405 Sum_probs=158.3
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------eEE
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 675 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i~ 675 (1445)
+++|+++.|.. +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03259 2 ELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75 (213)
T ss_pred eeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE
Confidence 57889998852 2359999999999999999999999999999999999999999999875 489
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHH
Q 000522 676 YVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1445)
Q Consensus 676 y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARa 747 (1445)
|++|+|.++. .|++||+.++.. .+. ++.++.++.+++.... .....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-----------NRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHHHH
Confidence 9999998875 599999987532 121 2345566666665433 33446899999999999999
Q ss_pred HccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 748 ly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
+..+|++++|||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988876 332122 37899999999998765 9999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=326.97 Aligned_cols=205 Identities=27% Similarity=0.444 Sum_probs=173.8
Q ss_pred CCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1445)
Q Consensus 602 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------- 672 (1445)
....++++|+++.|+.... .++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPD---TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCC---CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 4467899999999964211 2359999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHH
Q 000522 673 ----SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1445)
Q Consensus 673 ----~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARa 747 (1445)
.++|++|+|.+++.|++||+.++... ....+.+..+...+..-++.++.|.++..++...+|||||||||+||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred HHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 38999999999999999999876432 2222333344455666778888788888899999999999999999999
Q ss_pred HccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEE
Q 000522 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1445)
Q Consensus 748 ly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i 811 (1445)
++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQA-LYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999988876 333 3446899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=328.67 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=168.9
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG---K---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 4788999998842 2 359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCCC---ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000522 673 -SIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~ti~~nI~~g~~~---~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARal 748 (1445)
.++|++|+|.+++.|++||+.++..+ +.++..+.++.+++..+. ......+||||||||++||||+
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHH
Confidence 38999999999989999999876432 234556667777764332 1345678999999999999999
Q ss_pred ccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHh
Q 000522 749 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 749 y~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
+.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEEL-IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999998888775 332122 37899999999999775 99999999999999999888753
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=332.54 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=169.0
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------ 672 (1445)
..++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|..+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD---F---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC---e---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 35899999999852 2 35999999999999999999999999999999999864 5899998865
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCC---C-C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 673 ---------SIAYVPQVPWILSGTIRDNILFGKN---Y-D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~---~-~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
.++|++|++.+++.|++||+.++.. . + +++.++.++.+++...+. +..+....+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 151 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLS 151 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999999998999999987521 1 1 234455566666643332 23456678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL-IHE-LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998888775 433 3456899999999999865 999999999999999
Q ss_pred cCHhHHHh
Q 000522 815 GSSADLAV 822 (1445)
Q Consensus 815 g~~~~~~~ 822 (1445)
|+++++..
T Consensus 230 g~~~~~~~ 237 (253)
T PRK14242 230 GPTEQIFT 237 (253)
T ss_pred CCHHHHHc
Confidence 99888753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=331.09 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=163.2
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1445)
+++|+++.|+. . ++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 2 EVRGLTKRFGG---L---VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred eeeeeEEEECC---E---EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 57888998852 2 359999999999999999999999999999999999999999998875
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCCCC-----------------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000522 673 SIAYVPQVPWILSG-TIRDNILFGKNYD-----------------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1445)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~~~-----------------~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~L 734 (1445)
.++|++|+|.++++ |++|||.++.... .++..+.++..+++ ...+....+|
T Consensus 76 ~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (236)
T cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGEL 144 (236)
T ss_pred CEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhC
Confidence 38999999998876 9999998753211 11233334444332 2335567799
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEE
Q 000522 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 813 (1445)
Q Consensus 735 SGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~ 813 (1445)
|||||||++||||++.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL-IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999988876 33212257899999999999866 99999999999999
Q ss_pred ecCHhHHHh
Q 000522 814 IGSSADLAV 822 (1445)
Q Consensus 814 ~g~~~~~~~ 822 (1445)
.|+++++..
T Consensus 224 ~~~~~~~~~ 232 (236)
T cd03219 224 EGTPDEVRN 232 (236)
T ss_pred ecCHHHhcc
Confidence 999888743
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=364.40 Aligned_cols=211 Identities=24% Similarity=0.363 Sum_probs=176.7
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh-Hhhhcce
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1300 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1300 (1445)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.|+...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999976543 4567889
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
+|+||+|.+|++ |+++|+..... .+..+..+ .+.+.++.+|++........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 999999998876 99999975321 11111111 1233444456654445555689999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCC
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1374 r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p 1439 (1445)
++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.+++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999998763 47899999999999875 899999999999987654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=346.43 Aligned_cols=204 Identities=26% Similarity=0.362 Sum_probs=169.5
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1445)
...++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|.|+.+|++|+|.++|
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 446899999999852 2359999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcCCCCCCCc-cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000522 673 -SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~ 743 (1445)
.||||+|++-+|.. ||+|||.|+.. .+. ++..++++..++.... .....+|||||||||+
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVa 159 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVA 159 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 48999999999975 99999998742 222 2445556666664332 3345689999999999
Q ss_pred HHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHHHh
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
||||++.+|+++|||||||+||+...+.+.+.+..-....+.|+|+|||+.+.+. .||+|++|++|++++.|+++++..
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999888776532111123789999999999865 599999999999999999999865
Q ss_pred c
Q 000522 823 S 823 (1445)
Q Consensus 823 ~ 823 (1445)
.
T Consensus 240 ~ 240 (377)
T PRK11607 240 H 240 (377)
T ss_pred C
Confidence 3
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=331.19 Aligned_cols=193 Identities=25% Similarity=0.364 Sum_probs=160.3
Q ss_pred cceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCeeCCCCChHhhhcceEEEcCCCc-cc-C-
Q 000522 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LF-E- 1311 (1445)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~----~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-lF-~- 1311 (1445)
+|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++... +..+++++|+||+|. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 233468999999995 34 3
Q ss_pred ccHHHhcCCC----CCCC---hHHHHHHHHHccHHHHHHhCCCc---hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000522 1312 GSLRDNLDPF----HMND---DLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381 (1445)
Q Consensus 1312 gTIReNLdp~----~~~s---d~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1381 (1445)
-|+++|+... +... ++++.++++. +|++ ........+||+|||||++||||++++|+||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEA---------VGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHH---------cCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4888887321 1111 1223334443 3554 445666778999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1382 DECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1382 DEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+|++.
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999987643 7899999999999975 899999999999999988654
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=326.35 Aligned_cols=197 Identities=21% Similarity=0.275 Sum_probs=163.1
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------e
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1445)
++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD---F---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC---E---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 357888888852 2 359999999999999999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
++|++|++.+++. |++||+.++.. .+ +++.++.++.+++..... ....+||||||||++||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la 143 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIA 143 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHH
Confidence 8999999988875 99999986421 21 234566677777654332 33458999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccC-CceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHH
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
||++.+|+++||||||++||+++.+.+.+. +.....+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEY-IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999888875 3321223 7899999999999875 999999999999998887654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=321.31 Aligned_cols=193 Identities=20% Similarity=0.251 Sum_probs=162.1
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 369999999999999999999999999999999999999999999999999875 34577899999
Q ss_pred EcCCCcccC-ccHHHhcCCCCC--CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFHM--NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~~--~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
+||++.++. .|+++|+..... ..+.++.++++. +++....+....+||+|||||++||||++++|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRL---------FSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHH---------cCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999998875 699999864321 122233334433 34443334444579999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHh-CCCcEEEEeccChhHHhhcCEEEE
Q 000522 1380 CLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILI 1427 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~~DrI~V 1427 (1445)
||||||++||..+.+.+.+.|++. .+++|+|++||+.+.+.+||.-++
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999875 358999999999999999987544
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=326.48 Aligned_cols=190 Identities=25% Similarity=0.402 Sum_probs=157.5
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|+.. . +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 2 IRFEQVSKAYPGG-H---QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred eEEEEEEEEecCC-C---eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 5789999998532 1 2359999999999999999999999999999999999999999998875
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++|++|+|.++. .|++||+.++.. .+ +++..++++.+++..... ....+||||||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qr 146 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQR 146 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 3899999999886 599999987521 11 234566677777654333 3345899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEE
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i 811 (1445)
++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988876 33212347899999999999875 999999999974
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=330.59 Aligned_cols=201 Identities=27% Similarity=0.381 Sum_probs=166.9
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCC-----CeEEEEcC--------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG-------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~-----~G~i~~~~-------- 672 (1445)
++++|+++.|.. . .+++|+||++++||+++|+|+||||||||+++|+|.++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYGE---K---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEECC---e---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 678999998853 1 3599999999999999999999999999999999999998 99998864
Q ss_pred -------eEEEEcCCCCCCCccHHHHHhcCCCC----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000522 673 -------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1445)
Q Consensus 673 -------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGG 737 (1445)
.++|++|++++++.|++||+.++... +. ++..++++..++..++. ........+||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 148 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGG 148 (247)
T ss_pred chHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHH
Confidence 38999999999999999999875321 11 23445556666653221 1234566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecC
Q 000522 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 738 QkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1445)
||||++||||++.+|+++||||||++||+.+.+.+++. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL-IQE-LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999888775 433 3345899999999998765 99999999999999999
Q ss_pred HhHHH
Q 000522 817 SADLA 821 (1445)
Q Consensus 817 ~~~~~ 821 (1445)
++++.
T Consensus 227 ~~~~~ 231 (247)
T TIGR00972 227 TEQIF 231 (247)
T ss_pred HHHHH
Confidence 88874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=330.66 Aligned_cols=204 Identities=26% Similarity=0.335 Sum_probs=168.4
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------ 672 (1445)
..++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD---F---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC---c---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 46899999999852 2 259999999999999999999999999999999999987 489998764
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCCC----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
.++|++|+|.+++.|++|||.++... +. ++..++++.+++...+. .....++.+||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 152 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLS 152 (254)
T ss_pred cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCC
Confidence 38999999999989999999886421 21 23344555555532221 12344678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
||||||++||||++.+|+++||||||++||+.+.+.+++. +.. +.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL-IIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988876 333 3456899999999999765 999999999999999
Q ss_pred cCHhHHHh
Q 000522 815 GSSADLAV 822 (1445)
Q Consensus 815 g~~~~~~~ 822 (1445)
|+++++..
T Consensus 231 g~~~~~~~ 238 (254)
T PRK14273 231 SSTDELFF 238 (254)
T ss_pred CCHHHHHh
Confidence 99988753
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=325.40 Aligned_cols=197 Identities=29% Similarity=0.370 Sum_probs=161.5
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------eEEEEc
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVP 678 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y~~ 678 (1445)
+++|+++.|.... ..+++|+|+||+|++|++++|+||||||||||+++|+|..+|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 2 EVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred eEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 5788899885321 112469999999999999999999999999999999999999999999876 589999
Q ss_pred CCCCCCC-ccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000522 679 QVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1445)
Q Consensus 679 Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~ 750 (1445)
|+|.+++ .|++||+.++.. .+ .++.++.++.+++...+. ....+||||||||++||||++.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHc
Confidence 9999887 699999987532 11 234556667766654333 3345899999999999999999
Q ss_pred CCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhh-CCEEEEEe--CCEEEEecCH
Q 000522 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMD--KGQVKWIGSS 817 (1445)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-~d~i~~l~--~G~i~~~g~~ 817 (1445)
+|+++||||||++||+.+.+.+++. +.... ..++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999988886 33211 237899999999998765 99999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=322.35 Aligned_cols=188 Identities=27% Similarity=0.418 Sum_probs=157.3
Q ss_pred EEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------eEEEE
Q 000522 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------SIAYV 677 (1445)
Q Consensus 608 ~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------~i~y~ 677 (1445)
++|+++.|... .++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 2 IENISFSYKKG-----TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred cccEEEEeCCc-----CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE
Confidence 56778887531 2359999999999999999999999999999999999999999999876 48999
Q ss_pred cCCC--CCCCccHHHHHhcCCCC---ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000522 678 PQVP--WILSGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752 (1445)
Q Consensus 678 ~Q~p--~l~~~ti~~nI~~g~~~---~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~ 752 (1445)
+|+| .+++.|++||+.++... ++++.+++++.+++..... .....||||||||++||||+..+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 46778999999876432 2346677888887764433 233589999999999999999999
Q ss_pred CEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEE
Q 000522 753 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 812 (1445)
Q Consensus 753 ~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~ 812 (1445)
++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGEL-IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999998888775 43312357899999999999875 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=343.58 Aligned_cols=204 Identities=28% Similarity=0.365 Sum_probs=167.5
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|++++|+.... ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~--~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGGR--TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCCC--ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 578999999863111 12469999999999999999999999999999999999999999999875
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.|+|++|++.+++ .|++|||.++.. .+. ++..+.++..+|... ......+||||||||
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qR 148 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQR 148 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3999999999886 599999987532 222 234445555555432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCc-ccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~-~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1445)
++||||++.+|++++|||||++||+.+.+.+.+. +... ..+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999988876 3321 1237899999999999876 99999999999999999998
Q ss_pred HHhc
Q 000522 820 LAVS 823 (1445)
Q Consensus 820 ~~~~ 823 (1445)
+...
T Consensus 228 ~~~~ 231 (343)
T PRK11153 228 VFSH 231 (343)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=363.18 Aligned_cols=211 Identities=24% Similarity=0.335 Sum_probs=177.5
Q ss_pred EEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh-HhhhcceEEE
Q 000522 1225 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFAVV 1303 (1445)
Q Consensus 1225 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~~V 1303 (1445)
++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 469999999999999999999999999999999999999999999999999976654 4457889999
Q ss_pred cCCCcccCc-cHHHhcCCCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1304 PQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1304 pQdp~lF~g-TIReNLdp~~~------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
||++.+|.. |+++|+.+... .+.++.++ ...+.++.+|++........+||||||||++|||||+++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999987764 99999975321 12222221 1233445557766556666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999998753 47899999999998875 899999999999999998765
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.47 Aligned_cols=202 Identities=26% Similarity=0.394 Sum_probs=170.7
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|... . +++|+|+||+|++||+++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-~---~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 5 IIRVEHISFRYPDA-A---TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred eEEEEEEEEEeCCC-C---ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 58899999999532 1 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 -SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 -~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.|+|++|+| .+++.||+|||.++.. .++ ++..++++.++|...+... ...||||||||+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv 149 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRV 149 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHH
Confidence 389999998 4667899999988632 222 3456677777776555433 358999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
+||||++.+|+++||||||++||+.+.+.+++. +..... .+.|+|++||+++.+..||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999988886 333122 378999999999998889999999999999999988875
Q ss_pred h
Q 000522 822 V 822 (1445)
Q Consensus 822 ~ 822 (1445)
.
T Consensus 229 ~ 229 (279)
T PRK13635 229 K 229 (279)
T ss_pred c
Confidence 4
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=329.62 Aligned_cols=198 Identities=25% Similarity=0.375 Sum_probs=163.0
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|.. . .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~---~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 2 LEVENLSKVYPN--G---KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred eEEEeeeeecCC--C---cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHH
Confidence 568899998851 1 2359999999999999999999999999999999999999999998875
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCCC---------------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000522 673 ---SIAYVPQVPWILS-GTIRDNILFGKNY---------------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~~---------------~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~ 733 (1445)
.++|++|++.++. .|++||+.++... +.++..++++.+++... ......+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 145 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQ 145 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCccc
Confidence 2899999998886 5999999875310 11234455555555432 2345679
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEE
Q 000522 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1445)
Q Consensus 734 LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i 811 (1445)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||++++|++|++
T Consensus 146 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 224 (243)
T TIGR02315 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY-LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224 (243)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999998888775 333112 37899999999999864 999999999999
Q ss_pred EEecCHhHH
Q 000522 812 KWIGSSADL 820 (1445)
Q Consensus 812 ~~~g~~~~~ 820 (1445)
++.|+++++
T Consensus 225 ~~~~~~~~~ 233 (243)
T TIGR02315 225 VFDGAPSEL 233 (243)
T ss_pred EecCCHHHh
Confidence 999988775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=314.72 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=184.1
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh-hcceE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1301 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1301 (1445)
++.+|++.+|.. -.+++||||++++||.+|++||+||||||+++++.|+|+|++|+|.++|.||..++++.. |..|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 678999999964 369999999999999999999999999999999999999999999999999999998875 44588
Q ss_pred EEcCCCcccCc-cHHHhcCCCCC------------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~~------------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1368 (1445)
--.|.+-+|++ |+-||+.-... ....+-.++.+++ .+.++..||+...++...+||+||++||-|
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFVGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHcCCchhhcchhhcCChhHhHHHHH
Confidence 88999999987 99999853211 0000112222222 334445588888888888999999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCC--CcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1369 ARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||||..+|++|+||||.++|.++-...+.+.|++..+ +.|+++|-|+++.+++ ||||+||+.|+++.+|+|++-
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999988899999988764 5899999999999987 899999999999999999864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=334.27 Aligned_cols=186 Identities=30% Similarity=0.426 Sum_probs=156.8
Q ss_pred cceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------------eEEEEcCCCCCCC-c
Q 000522 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILS-G 686 (1445)
Q Consensus 625 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------------~i~y~~Q~p~l~~-~ 686 (1445)
.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|+|.+++ .
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 359999999999999999999999999999999999999999998865 3899999999885 5
Q ss_pred cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcC
Q 000522 687 TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759 (1445)
Q Consensus 687 ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe 759 (1445)
|++||+.++.. ++ +++..++++.+++...+.. ...+||||||||++||||++.+|+++||||
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 22 2345566777777544433 345899999999999999999999999999
Q ss_pred CCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHh
Q 000522 760 VLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 760 ~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
||++||+.+.+.+.+. +.... ..|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 187 Pt~~LD~~~~~~l~~~-l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 187 AFSALDPLIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999988876 32211 237899999999998765 99999999999999999988754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=318.73 Aligned_cols=336 Identities=22% Similarity=0.302 Sum_probs=243.3
Q ss_pred HHhhccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHhhcCCCCCCcc
Q 000522 1082 TETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA----VIGSRGNLPATFS 1157 (1445)
Q Consensus 1082 ~Etl~Gl~tIraf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~----v~~~~~~~~~~~~ 1157 (1445)
++...+...|.-|+.++..........++.-.......+...|+++..+.+.-+ ..++..++ ++..+ ..+..
T Consensus 269 ~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Yl-g~ilsy~vi~~p~Fs~h---~y~~~ 344 (659)
T KOG0060|consen 269 SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYL-GGILSYVVIAIPFFSGH---VYDDL 344 (659)
T ss_pred eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhheeeEEeeeeeccc---ccCCc
Confidence 344556677888887766655555555555444455566777887766655421 11111111 11111 12233
Q ss_pred cHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C---c------cccc----c---CCCC
Q 000522 1158 TPGLV-GLA---LSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV----P---Q------EELC----G---YQSL 1213 (1445)
Q Consensus 1158 ~~g~v-gl~---l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~----~---~------e~~~----~---~~~~ 1213 (1445)
++... +.. ..+.+.+.+.+..++....++..-.+-..||-++.+. . + |+.. . ....
T Consensus 345 s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~ 424 (659)
T KOG0060|consen 345 SPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGS 424 (659)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCC
Confidence 34333 222 1223334444555555555555555667888777642 0 0 1000 0 0111
Q ss_pred CCCCCCCccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCCh
Q 000522 1214 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293 (1445)
Q Consensus 1214 ~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~ 1293 (1445)
+..||.+..|+|++|++.=|.+.+...+|+||+|+.|+.+-|+|+||||||||++.|-|+.+..+|++.--...-
T Consensus 425 ~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----- 499 (659)
T KOG0060|consen 425 GKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----- 499 (659)
T ss_pred cccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----
Confidence 345788889999999999877666667789999999999999999999999999999999999999997532110
Q ss_pred HhhhcceEEEcCCCcccCccHHHhcC-CC-------CCCChHHHHHHHHHccHHHHHHhC-CCchhhh-cCCCCCChhHH
Q 000522 1294 RDLRGRFAVVPQSPFLFEGSLRDNLD-PF-------HMNDDLKIWSVLEKCHVKEEVEAV-GLETFVK-ESGISFSVGQR 1363 (1445)
Q Consensus 1294 ~~lR~~i~~VpQdp~lF~gTIReNLd-p~-------~~~sd~ei~~aL~~~~l~~~i~~l-gLdt~v~-e~G~~LSgGQr 1363 (1445)
-+.+-++||.|++-.||+|+-+- |. ...+|++|.+.|+.++|...++.. |+|+++. +...-||+||+
T Consensus 500 ---~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 500 ---PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred ---CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 04589999999999999999974 31 235899999999999999999888 9997654 55667999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhhcCEEEEEeCC
Q 000522 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHG 1431 (1445)
Q Consensus 1364 Qrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrI~Vl~~G 1431 (1445)
||+|+||.++.+|++-+|||+|||||.+.|..+.+.+++. +-|.|.|.||-+.-+.-|.++-|+.+
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999999985 89999999999998889999999864
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=318.91 Aligned_cols=212 Identities=25% Similarity=0.332 Sum_probs=180.4
Q ss_pred cEEEEEEEEEeCCCC----------------------CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 000522 1222 LIEFQNVTMRYKPSL----------------------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~----------------------~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G 1279 (1445)
.|+++||+.-++.+. ..-++|+||+|+.||..-|.|-||||||||+.++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588899988775431 1237999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCChHhhh----cceEEEcCCCcccCc-cHHHhcCCCCCC---C----hHHHHHHHHHccHHHHHHhCCC
Q 000522 1280 QILVDGLNIINTPVRDLR----GRFAVVPQSPFLFEG-SLRDNLDPFHMN---D----DLKIWSVLEKCHVKEEVEAVGL 1347 (1445)
Q Consensus 1280 ~I~IDG~di~~i~~~~lR----~~i~~VpQdp~lF~g-TIReNLdp~~~~---s----d~ei~~aL~~~~l~~~i~~lgL 1347 (1445)
+|++||.||..++..+|| +++++|.|.--||+- ||-+|..++-+. + .+...++|+.+||.++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~------ 157 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY------ 157 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh------
Confidence 999999999999988875 579999999999986 999999876432 2 2234455666665544
Q ss_pred chhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCE
Q 000522 1348 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDE 1424 (1445)
Q Consensus 1348 dt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~Dr 1424 (1445)
-..-...||||+|||+.|||||..+|+||++|||.|+||+--...+|+-+.+.- -++|+++|||+|+.... -||
T Consensus 158 ---~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 158 ---ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred ---hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 334456799999999999999999999999999999999999999999886543 38999999999997654 699
Q ss_pred EEEEeCCeEeeecCCCCC
Q 000522 1425 ILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1425 I~Vl~~G~vvE~G~p~~~ 1442 (1445)
|..|++|+|+..|+|+|-
T Consensus 235 IaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred EEEecCCeEEEeCCHHHH
Confidence 999999999999999874
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=330.16 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=170.9
Q ss_pred CCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC----
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---- 672 (1445)
Q Consensus 602 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~---- 672 (1445)
....++++|+++.|.. . ++|+|+||+|++||+++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 10 ~~~~l~~~~l~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---F---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeCC---e---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3456899999999852 2 35999999999999999999999999999999999986 5899998864
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCC----CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000522 673 -----------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1445)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~ 733 (1445)
.++|++|+|.+++.|++||+.++.. .++ ++.+++++..++..++. +..++...+
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 156 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYS 156 (260)
T ss_pred ccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCC
Confidence 4899999999988999999987532 222 33455666666643332 234567789
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEE
Q 000522 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 812 (1445)
Q Consensus 734 LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~ 812 (1445)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|+++
T Consensus 157 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL-ITE-LKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999888776 332 3356899999999998865 9999999999999
Q ss_pred EecCHhHHHh
Q 000522 813 WIGSSADLAV 822 (1445)
Q Consensus 813 ~~g~~~~~~~ 822 (1445)
+.|+.+++..
T Consensus 235 ~~g~~~~~~~ 244 (260)
T PRK10744 235 EFGNTDTIFT 244 (260)
T ss_pred EeCCHHHHHh
Confidence 9999888753
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=337.53 Aligned_cols=202 Identities=25% Similarity=0.382 Sum_probs=168.1
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|.. ..+|+|+||+|++||+++++||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 6 APIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred ceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 46899999999852 2359999999999999999999999999999999999999999999976
Q ss_pred -eEEEEcCCCCCCC-ccHHHHHhc-CCCC--Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000522 673 -SIAYVPQVPWILS-GTIRDNILF-GKNY--DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~-~ti~~nI~~-g~~~--~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~ 743 (1445)
.||||||+|.++. .|++||+.+ +..+ +. ++.+++++.++|.... .....+||||||||++
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLT 148 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHH
Confidence 4999999999886 599999985 3211 21 2334555555554322 2334589999999999
Q ss_pred HHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHh
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
||||+.++|++++|||||++||+...+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999988876 43312347899999999999876 99999999999999999999865
Q ss_pred c
Q 000522 823 S 823 (1445)
Q Consensus 823 ~ 823 (1445)
.
T Consensus 228 ~ 228 (306)
T PRK13537 228 S 228 (306)
T ss_pred c
Confidence 4
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=332.99 Aligned_cols=200 Identities=26% Similarity=0.399 Sum_probs=166.9
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|... ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (274)
T PRK13644 2 IRLENVSYSYPDG-----TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIR 76 (274)
T ss_pred EEEEEEEEEcCCC-----CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHH
Confidence 5788999998521 2359999999999999999999999999999999999999999998875
Q ss_pred -eEEEEcCCCC--CCCccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.++|++|+|. +++.|++|||.++.. .+ .++.+++++.++++... ......||||||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv 145 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCV 145 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHH
Confidence 3899999986 567899999988632 22 23345556666664332 345568999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
+||||++.+|+++||||||++||+.+.+.+++. +.....+|.|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999998888876 3321234789999999999998899999999999999999988753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=345.06 Aligned_cols=211 Identities=27% Similarity=0.459 Sum_probs=174.4
Q ss_pred cEEEEEEEEEeCCCCC--ccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CcEEEECCeeCCCCChHh
Q 000522 1222 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC----GGQILVDGLNIINTPVRD 1295 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~----~G~I~IDG~di~~i~~~~ 1295 (1445)
-++++|++..|..... .+++||||+|.+||.+||||+|||||||+.++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975533 5999999999999999999999999999999999999987 899999999999998866
Q ss_pred hh----cceEEEcCCCc-ccCc--cHHHhcC----CCCCCC----hHHHHHHHHHccHHHHHHhCCCchhhh--cCCCCC
Q 000522 1296 LR----GRFAVVPQSPF-LFEG--SLRDNLD----PFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVK--ESGISF 1358 (1445)
Q Consensus 1296 lR----~~i~~VpQdp~-lF~g--TIReNLd----p~~~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~--e~G~~L 1358 (1445)
.| ++|++|||||. .++- ||.+-|. .....+ .++..+.|+.+ |+..... .-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V---------gl~~~~~~~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV---------GLPDPERRDRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc---------CCCChhhhccCCccc
Confidence 64 57999999996 4443 5544442 111111 12233333333 5544433 356789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEee
Q 000522 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPH 1435 (1445)
Q Consensus 1359 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE 1435 (1445)
|||||||+.||+||..+|++||+||||.+||+.|.+.|.+.|++.. .|.++|+|||++..+.+ ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998865 58999999999999986 89999999999999
Q ss_pred ecCCCC
Q 000522 1436 CGCAAA 1441 (1445)
Q Consensus 1436 ~G~p~~ 1441 (1445)
.|++++
T Consensus 236 ~G~~~~ 241 (539)
T COG1123 236 TGPTEE 241 (539)
T ss_pred ecCHHH
Confidence 998765
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=320.28 Aligned_cols=192 Identities=24% Similarity=0.330 Sum_probs=161.3
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------eE
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 674 (1445)
++++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 74 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE
Confidence 357899998842 2359999999999999999999999999999999999999999999976 38
Q ss_pred EEEcCCCCCC-CccHHHHHhcCC---CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000522 675 AYVPQVPWIL-SGTIRDNILFGK---NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1445)
Q Consensus 675 ~y~~Q~p~l~-~~ti~~nI~~g~---~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~ 750 (1445)
+||+|++.++ +.|++||+.++. ..++++.+++++..++.... ......||||||||++||||++.
T Consensus 75 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 75 GALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred EEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhc
Confidence 9999999887 469999997653 22455666777777775433 23456899999999999999999
Q ss_pred CCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 751 ~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELREL-ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999988875 33212257899999999999875 9999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.72 Aligned_cols=198 Identities=26% Similarity=0.439 Sum_probs=164.4
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------e
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1445)
++++|+++.|... + +++|+|+||++++|++++|+||||||||||+++|.|.++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~-~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG-T---KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC-C---ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 3578889988532 1 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCC-CccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWIL-SGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~-~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
++|++|+|.++ +.|++||+.++.. .+ .++.+++++.+++.... .....+||||||||++||
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLA 145 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHH
Confidence 89999999888 5699999986421 22 23456667777665332 234468999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHH
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 146 ~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDL-ILE-VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHhcCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999988875 333 3446899999999999875 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=328.43 Aligned_cols=197 Identities=26% Similarity=0.379 Sum_probs=161.9
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1445)
+++|+++.|... .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 2 EVENLSKTYPNG-----KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred EEeeEEEecCCc-----cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 578888888531 2359999999999999999999999999999999999999999998865
Q ss_pred --eEEEEcCCCCCCC-ccHHHHHhcCCC------------CC---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000522 673 --SIAYVPQVPWILS-GTIRDNILFGKN------------YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~-~ti~~nI~~g~~------------~~---~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~L 734 (1445)
.++|++|++.++. .|++||+.++.. .. .++..++++.+++.. .....+.+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 145 (241)
T cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQL 145 (241)
T ss_pred HhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccC
Confidence 3899999998876 699999986531 01 122334444444432 234567799
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhh-hCCEEEEEeCCEEE
Q 000522 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVK 812 (1445)
Q Consensus 735 SGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~ 812 (1445)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+. .||++++|++|+++
T Consensus 146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988876 332112 3789999999999988 59999999999999
Q ss_pred EecCHhHH
Q 000522 813 WIGSSADL 820 (1445)
Q Consensus 813 ~~g~~~~~ 820 (1445)
+.|+++++
T Consensus 225 ~~~~~~~~ 232 (241)
T cd03256 225 FDGPPAEL 232 (241)
T ss_pred eecCHHHh
Confidence 99998876
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=325.35 Aligned_cols=198 Identities=24% Similarity=0.327 Sum_probs=163.1
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.... ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSV--QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCc--ceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4789999999964211 12469999999999999999999999999999999999999999999875
Q ss_pred -----eEEEEcCCCCCCCc-cHHHHHhcCC---CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 673 -----SIAYVPQVPWILSG-TIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 -----~i~y~~Q~p~l~~~-ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
.++|++|+|.+++. |++||+.++. ..+ +++.+++++.+++... ......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 151 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGER 151 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHH
Confidence 38999999988875 9999998742 122 2344556666665432 2345578999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhhCCEEEEEeCCEEEEecC
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~ 816 (1445)
||++||||++.+|+++||||||++||+.+.+.+.+. +.... .+|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL-LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999888875 33211 24789999999999999889999999999998765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=360.94 Aligned_cols=213 Identities=23% Similarity=0.347 Sum_probs=176.6
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCeeCCCCChHh-hhcc
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRGR 1299 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di~~i~~~~-lR~~ 1299 (1445)
++++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999963 4699999999999999999999999999999999999987 7999999999998877654 4678
Q ss_pred eEEEcCCCcccCc-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhh-hcCCCCCChhHHHHHHHHH
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLAR 1370 (1445)
Q Consensus 1300 i~~VpQdp~lF~g-TIReNLdp~~~-------~sd~ei~~aL~~~~l~~~i~~lgLdt~v-~e~G~~LSgGQrQrl~LAR 1370 (1445)
++||||+|.+|.. |+++|+..... ...++..+ ...+.++.+|++... ......||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 9999999988875 99999865321 11111111 123344445664332 2334579999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999998753 47899999999999876 899999999999999988653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=320.06 Aligned_cols=195 Identities=24% Similarity=0.310 Sum_probs=164.1
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999964 3699999999999999999999999999999999999999999999999998752 3466799
Q ss_pred EEcCCCcccCc-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1302 ~VpQdp~lF~g-TIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
|+||+|.+|++ |+++|+.... ...++.+.++++.. |+..........||+|||||++||||++++|
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV---------GLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc---------CChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 9999985421 11222333444444 4433344445679999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDH 1430 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~ 1430 (1445)
+||+|||||++||.++.+.+.+.+++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999998653 57999999999999875 699999875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.84 Aligned_cols=191 Identities=26% Similarity=0.369 Sum_probs=156.5
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1445)
+++|+++.|+.... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~~~--~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 2 ELKNLSKTYGGGGE--KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred eEeeeEEEecCCCc--ceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 57889998853210 12469999999999999999999999999999999999999999998764
Q ss_pred ---eEEEEcCCCCCCCc-cHHHHHhcCCCC---C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 ---SIAYVPQVPWILSG-TIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~---~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++|++|+|.++.. |++||+.++..+ + +++.+++++..+++... .....+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 148 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQR 148 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHH
Confidence 38999999998876 999999876432 1 23445566666554322 34556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeCCEE
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQV 811 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i 811 (1445)
++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMEL-LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999998888776 333122 37899999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=325.15 Aligned_cols=199 Identities=25% Similarity=0.378 Sum_probs=164.5
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------e
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1445)
++++|++++|+. . ++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (236)
T TIGR03864 2 LEVAGLSFAYGA---R---RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75 (236)
T ss_pred EEEEeeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhh
Confidence 568899998852 2 359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCC-CCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWI-LSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l-~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
++|++|++.+ ++.|++||+.++.. .++ ++..+.++..++. ...+....+||||||||++||
T Consensus 76 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred EEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHH
Confidence 8999999987 46799999986532 222 1233344444443 223556679999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHHh
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
||++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 145 ral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 145 RALLHRPALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999988876 33211 24789999999999988899999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=324.87 Aligned_cols=202 Identities=28% Similarity=0.402 Sum_probs=164.8
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|..... ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGG--KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCC--ceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 578999999853210 01469999999999999999999999999999999999999999998864
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++|++|+|.++. .|++||+.++.. .+. ++..+.++..++... ......+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 148 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQR 148 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHH
Confidence 3899999999987 599999987532 221 233445555555432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1445)
++||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILAL-LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999888776 332122 37899999999999865 99999999999999999887
Q ss_pred HH
Q 000522 820 LA 821 (1445)
Q Consensus 820 ~~ 821 (1445)
+.
T Consensus 228 ~~ 229 (233)
T cd03258 228 VF 229 (233)
T ss_pred Hh
Confidence 64
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=326.16 Aligned_cols=197 Identities=29% Similarity=0.365 Sum_probs=165.1
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------eEE
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~ 675 (1445)
..++++|++++|.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 45899999999852 2359999999999999999999999999999999999999999999876 489
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCC
Q 000522 676 YVPQVPWILS-GTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 753 (1445)
Q Consensus 676 y~~Q~p~l~~-~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~ 753 (1445)
|++|+|.+++ .|++||+.++... .+++..++++..++.... .....+||||||||++||||++.+|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998887 5999999876321 234556667776665332 34567999999999999999999999
Q ss_pred EEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHh
Q 000522 754 IYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 754 illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~ 818 (1445)
++||||||++||+.+.+.+.+. +.... ..++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999888775 33211 237899999999998765 9999999999999877643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=322.91 Aligned_cols=199 Identities=27% Similarity=0.414 Sum_probs=161.6
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|.. . ++++|+||++++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK---S---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC---e---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 357888988852 2 359999999999999999999999999999999999999999998875
Q ss_pred -eEEEEcCCCCCCCc-cHHHHHhcCCCCC-h----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 673 -SIAYVPQVPWILSG-TIRDNILFGKNYD-P----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~~-~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
.++|++|++.++.. |++||+.++.... . ++..++++.+. .+ ......+..+||||||||++||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l----~~~~~~~~~~LS~G~~qrv~la 144 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RL----KERRKQLAGTLSGGEQQMLAIA 144 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hh----hhhhhCchhhCCHHHHHHHHHH
Confidence 38999999998876 9999998764321 1 12223333321 11 1223456778999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHH
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
||+..+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++.+.|+.+++.
T Consensus 145 ral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 145 RALMSRPKLLLLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999988876 33312257899999999998765 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=329.53 Aligned_cols=205 Identities=23% Similarity=0.343 Sum_probs=170.3
Q ss_pred CCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC----
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG---- 672 (1445)
Q Consensus 602 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~---- 672 (1445)
.+..++++|+++.|.. . .+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---K---QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECC---E---EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 3457999999999852 2 359999999999999999999999999999999999974 899998865
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCC---C--C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000522 673 -----------SIAYVPQVPWILSGTIRDNILFGKN---Y--D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732 (1445)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~---~--~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~ 732 (1445)
.++|++|+|.+++.|++||+.++.. . . .++..++++.+++..++. +..+..+.
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 162 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGT 162 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 3899999999998899999987532 1 1 123455666666644322 12356678
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEE
Q 000522 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 811 (1445)
Q Consensus 733 ~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i 811 (1445)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL-IDE-LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-HHH-HhcCCeEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999998888775 433 3446899999999999865 999999999999
Q ss_pred EEecCHhHHH
Q 000522 812 KWIGSSADLA 821 (1445)
Q Consensus 812 ~~~g~~~~~~ 821 (1445)
++.|+.+++.
T Consensus 241 ~~~g~~~~~~ 250 (267)
T PRK14235 241 VEVGDTEKMF 250 (267)
T ss_pred EEeCCHHHHH
Confidence 9999988875
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=369.05 Aligned_cols=216 Identities=24% Similarity=0.346 Sum_probs=186.7
Q ss_pred cEEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhh---
Q 000522 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1296 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l--- 1296 (1445)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999643 2469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hcceEEEcCCCcccCc-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000522 1297 -RGRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1297 -R~~i~~VpQdp~lF~g-TIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1371 (1445)
|++++|+||+|.+|++ |+.||++... ..+.++ .+....+.++.+|++..+.....+||+||+||++||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 6789999999999975 9999996421 111111 11123445555677777777778999999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhcCEEEEEeCCeEeeecCCCCC
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1372 LLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
++++|++|||||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+..|||+++|++|+++|.|++++-
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCcccc
Confidence 999999999999999999999999999998764 58999999999999989999999999999999999865
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=333.10 Aligned_cols=206 Identities=25% Similarity=0.400 Sum_probs=167.9
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|..... ..+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4678999999963211 012469999999999999999999999999999999999999999998866
Q ss_pred -----eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
.++|++|+| .+++.|++|||.++.. .+. ++.+++++.+++..+. ......+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHH
Confidence 379999998 5777899999987532 221 2345566666664222 234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCH
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~ 817 (1445)
|||++||||+..+|+++||||||++||+...+.+.+. +.....+|.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~-l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL-FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998888775 43312347899999999998765 999999999999999999
Q ss_pred hHHHh
Q 000522 818 ADLAV 822 (1445)
Q Consensus 818 ~~~~~ 822 (1445)
+++..
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 88754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=321.38 Aligned_cols=192 Identities=30% Similarity=0.427 Sum_probs=157.9
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------eE
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 674 (1445)
++++|+++.|.. . ++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 i~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i 74 (213)
T cd03301 1 VELENVTKRFGN---V---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74 (213)
T ss_pred CEEEeeEEEECC---e---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceE
Confidence 357889998853 2 359999999999999999999999999999999999999999999875 38
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000522 675 AYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1445)
Q Consensus 675 ~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lAR 746 (1445)
+|++|++.+++ .|++||+.++.. .++ ++..+.++..+++.. ......+||||||||++|||
T Consensus 75 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lar 143 (213)
T cd03301 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGR 143 (213)
T ss_pred EEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHH
Confidence 99999999885 599999987532 222 233445555555432 23455689999999999999
Q ss_pred HHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 747 aly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|++.+|++++|||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999988876 332122 37899999999998775 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=321.07 Aligned_cols=188 Identities=32% Similarity=0.437 Sum_probs=154.8
Q ss_pred EEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------eEEEEcC
Q 000522 608 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVPQ 679 (1445)
Q Consensus 608 ~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y~~Q 679 (1445)
++|+++.|.. ..+++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 5677888742 2359999999999999999999999999999999999999999999987 3999999
Q ss_pred CCCC---CCccHHHHHhcCCCC-----------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 680 VPWI---LSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 680 ~p~l---~~~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
+|.+ ++.|++||+.++... ++++.+++++.++++.... ....+||||||||++||
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 144 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLA 144 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHH
Confidence 9876 557999999875321 1234566777777754333 34468999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++| +++.
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYEL-LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999988876 33212257899999999999865 9999999886 4443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=331.58 Aligned_cols=203 Identities=28% Similarity=0.384 Sum_probs=169.7
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCC---eEEEEcC--------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASG-------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~---G~i~~~~-------- 672 (1445)
..++++|+++.|+.. . .++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~---~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-K---KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC-C---ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 468899999998532 1 235999999999999999999999999999999999999988 8998875
Q ss_pred -----eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 -----SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 -----~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
.+|||+|+|+ +++.|++|||.|+.. .+. ++..++++.++|.... .....+|||||
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~ 148 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQ 148 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHH
Confidence 4899999995 567899999988632 222 2355667777775433 33446999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeCCEEEEecCH
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 817 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~ 817 (1445)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... .|+|+|++||+++.+..||++++|++|++++.|++
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999988876 333122 37899999999999888999999999999999999
Q ss_pred hHHHh
Q 000522 818 ADLAV 822 (1445)
Q Consensus 818 ~~~~~ 822 (1445)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=328.78 Aligned_cols=206 Identities=25% Similarity=0.327 Sum_probs=172.0
Q ss_pred CCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC----
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---- 672 (1445)
Q Consensus 602 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~---- 672 (1445)
....++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 4457899999999842 235999999999999999999999999999999999986 5899998765
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCC----CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000522 673 -----------SIAYVPQVPWILSGTIRDNILFGKN----YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1445)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~ 733 (1445)
.++|++|+|.+++.|++|||.++.. .+ +++..++++.+++..++. +..+..+.+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~ 163 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALT 163 (267)
T ss_pred cccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCccc
Confidence 3899999999998999999987532 12 133455667777654432 234567789
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEE
Q 000522 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 812 (1445)
Q Consensus 734 LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~ 812 (1445)
||||||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.++.|+|++||+++.+.. ||++++|++|+++
T Consensus 164 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET-MFE-LKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999998888775 333 3456899999999998865 9999999999999
Q ss_pred EecCHhHHHh
Q 000522 813 WIGSSADLAV 822 (1445)
Q Consensus 813 ~~g~~~~~~~ 822 (1445)
+.|+++++..
T Consensus 242 ~~g~~~~~~~ 251 (267)
T PRK14237 242 EYDKTRNIFT 251 (267)
T ss_pred EeCCHHHHhc
Confidence 9999988753
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=325.91 Aligned_cols=200 Identities=25% Similarity=0.388 Sum_probs=163.3
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------e
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 673 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 673 (1445)
+++|+++.|... ..+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 2 EFENVTKRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred EEEEEEEEeCCc-----ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 578899988631 2359999999999999999999999999999999999999999998875 4
Q ss_pred EEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
++|++|+|.++. .|++||+.++.. .+. ++..++++..++.. .......+.+||||||||++||
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHH
Confidence 899999999886 599999987532 221 23344555555542 0123456679999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHH
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
||++.+|++++|||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEE-FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999998888776 332112 37899999999998765 9999999999999999988764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=335.38 Aligned_cols=202 Identities=26% Similarity=0.389 Sum_probs=166.8
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 46889999999852 2359999999999999999999999999999999999999999999875
Q ss_pred -eEEEEcCCCCCCC-ccHHHHHhc-CC--CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000522 673 -SIAYVPQVPWILS-GTIRDNILF-GK--NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~-~ti~~nI~~-g~--~~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~ 743 (1445)
.+||++|++.++. .|++||+.+ +. ..+. ++.+++++.+++... ......+||||||||++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 145 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLT 145 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHH
Confidence 4999999998885 599999974 22 1222 223344555555332 23345689999999999
Q ss_pred HHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHh
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 744 lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999988876 33212357899999999999875 99999999999999999999864
Q ss_pred c
Q 000522 823 S 823 (1445)
Q Consensus 823 ~ 823 (1445)
.
T Consensus 225 ~ 225 (303)
T TIGR01288 225 E 225 (303)
T ss_pred h
Confidence 3
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=343.11 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=168.2
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|++++|.. ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 3 ~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 4789999999852 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCCC-CCccHHHHHhcCCC-----C------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000522 673 -SIAYVPQVPWI-LSGTIRDNILFGKN-----Y------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 -~i~y~~Q~p~l-~~~ti~~nI~~g~~-----~------~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQk 739 (1445)
.+|||+|++.+ ++.|++||+.++.. + +.++.+++++..++.... .....+||||||
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGer 145 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGER 145 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 49999999987 56799999988641 1 123455666666664322 234568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHh
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 740 qRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~ 818 (1445)
||++|||||+++|++++|||||++||+.....+++. +.....+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 146 QRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l-L~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ 224 (402)
T PRK09536 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL-VRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224 (402)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999998888875 33212247899999999999865 9999999999999999999
Q ss_pred HHHh
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~~~~ 822 (1445)
++..
T Consensus 225 ev~~ 228 (402)
T PRK09536 225 DVLT 228 (402)
T ss_pred HHhC
Confidence 8754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=324.46 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=162.2
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1445)
+++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (232)
T cd03218 2 RAENLSKRYGK---R---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75 (232)
T ss_pred eEEEEEEEeCC---E---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhc
Confidence 57889998852 2 359999999999999999999999999999999999999999998865
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHH
Q 000522 673 SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1445)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~l 744 (1445)
.++|++|++.++++ |++||+.++.+ .+. ++.++.++..++.. .......+||||||||++|
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 144 (232)
T cd03218 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEI 144 (232)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHH
Confidence 38999999998876 99999987532 111 22334444444432 2345667999999999999
Q ss_pred HHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHH
Q 000522 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 745 ARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
|||+..+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++.+.|+.+++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKI-IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999888875 33212347899999999987665 9999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=330.52 Aligned_cols=206 Identities=24% Similarity=0.376 Sum_probs=171.1
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|++++|+...+...+++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 47899999999643210113469999999999999999999999999999999999999999998875
Q ss_pred --eEEEEcCCCC--CCCccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++|++|+|. +++.|+.||+.|+.. .+ +++.+++++.++|..... ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999985 666799999998632 12 234566777777765443 3346899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
++||||++.+|+++||||||++||+.+.+.+.+. +..... ++.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 333112 37899999999999888999999999999999999987
Q ss_pred Hh
Q 000522 821 AV 822 (1445)
Q Consensus 821 ~~ 822 (1445)
..
T Consensus 232 ~~ 233 (280)
T PRK13633 232 FK 233 (280)
T ss_pred hc
Confidence 54
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=320.30 Aligned_cols=190 Identities=24% Similarity=0.353 Sum_probs=158.3
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------e
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1445)
++++|+++.|.. . ++++|+||++++| +++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~---~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK---K---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC---E---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 367899998853 2 3599999999999 9999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
++|++|+|.++.. |++||+.+... .+ +++.+++++.+++....+ ....+||||||||++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 142 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIA 142 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHH
Confidence 8999999998876 99999986421 11 234556667666654322 34468999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
||++++|+++||||||++||+.+.+++.+. +.. ..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNL-LSE-LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999988876 333 3346899999999999865 9999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=327.03 Aligned_cols=204 Identities=23% Similarity=0.338 Sum_probs=167.3
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc--C---CCeEEEEcC------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM--L---THGSIHASG------ 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~--~---~~G~i~~~~------ 672 (1445)
..++++|+++.|.. .++|+|+||+|++||+++|+|+||||||||+++|+|.++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 46899999998852 235999999999999999999999999999999999987 3 689998764
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCCC----Chh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY----DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
.+||++|+|.+++.|++||+.++... +++ +..++++..++.+++. +.....+.+||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS 157 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLS 157 (259)
T ss_pred ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCC
Confidence 38999999999989999999876321 211 2334455555543221 22356778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
||||||++||||++.+|++++|||||++||+++.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL-ILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998888765 433 3456899999999998765 999999999999999
Q ss_pred cCHhHHHh
Q 000522 815 GSSADLAV 822 (1445)
Q Consensus 815 g~~~~~~~ 822 (1445)
|+++++..
T Consensus 236 g~~~~~~~ 243 (259)
T PRK14274 236 NDTNKMFS 243 (259)
T ss_pred CCHHHHhh
Confidence 99998754
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=309.40 Aligned_cols=166 Identities=33% Similarity=0.550 Sum_probs=148.8
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------e
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1445)
++++|+++.|.... +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQE----QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCCC----ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 35789999986421 2359999999999999999999999999999999999999999999886 3
Q ss_pred EEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCC
Q 000522 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 753 (1445)
Q Consensus 674 i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~ 753 (1445)
++|++|+|++++.|++||| ..+||||||||++||||++.+|+
T Consensus 77 i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 77 ISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999998 45899999999999999999999
Q ss_pred EEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCCEEEEec
Q 000522 754 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 754 illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g 815 (1445)
+++|||||++||+.+.+.+++. +.. +.+++|+|++||+.+.++.||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSL-IFE-VLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999888876 333 34578999999999999889999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=366.55 Aligned_cols=215 Identities=24% Similarity=0.341 Sum_probs=173.9
Q ss_pred cEEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCC----------
Q 000522 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII---------- 1289 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~---------- 1289 (1445)
.|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCChH---hhh-cceEEEcCCC--cccCc-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCc---hhhhcCC
Q 000522 1290 NTPVR---DLR-GRFAVVPQSP--FLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESG 1355 (1445)
Q Consensus 1290 ~i~~~---~lR-~~i~~VpQdp--~lF~g-TIReNLdp~~----~~sd~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G 1355 (1445)
+.+.. .+| ++|++|+|+| .+++. ||++|+.... ..+..+..+ .+.+.++.+|+. .......
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHCCCCChhhHHhCCC
Confidence 22322 334 5799999999 57764 9999986421 112211111 112333344553 2355666
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-C-CcEEEEeccChhHHhh-cCEEEEEeCCe
Q 000522 1356 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-K-GMTVITIAHRISTVLN-MDEILILDHGH 1432 (1445)
Q Consensus 1356 ~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~-~~TvI~IaHrl~ti~~-~DrI~Vl~~G~ 1432 (1445)
.+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++|++|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 7899999999999999999999999999999999999999999998864 3 8999999999999865 89999999999
Q ss_pred EeeecCCCC
Q 000522 1433 LPHCGCAAA 1441 (1445)
Q Consensus 1433 vvE~G~p~~ 1441 (1445)
|+|.|++++
T Consensus 247 i~~~g~~~~ 255 (623)
T PRK10261 247 AVETGSVEQ 255 (623)
T ss_pred ecccCCHHH
Confidence 999998754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=327.22 Aligned_cols=203 Identities=26% Similarity=0.322 Sum_probs=168.1
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcC---ccC--CCeEEEEcC-------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE---MML--THGSIHASG------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~---~~~--~~G~i~~~~------- 672 (1445)
.++++|+++.|.. ..+|+|+||++++||+++|+|+||||||||+++|.|. .++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 5789999999852 2359999999999999999999999999999999996 454 589998764
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCCC----C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.++|++|+|.+++.|++||+.++... + +++.+++++.+++..++. +..+..+.+|||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 149 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSG 149 (250)
T ss_pred ccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCH
Confidence 38999999999989999999875321 1 233456666666644332 223566789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL-IHE-LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999988876 333 3457899999999999865 9999999999999999
Q ss_pred CHhHHHh
Q 000522 816 SSADLAV 822 (1445)
Q Consensus 816 ~~~~~~~ 822 (1445)
+++++..
T Consensus 228 ~~~~~~~ 234 (250)
T PRK14245 228 DTKKIFT 234 (250)
T ss_pred CHHHHhc
Confidence 9998753
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=331.12 Aligned_cols=201 Identities=23% Similarity=0.360 Sum_probs=168.8
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|... ..+|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 5 ILKVEELNYNYSDG-----THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred eEEEEeEEEEeCCC-----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 58899999999521 2359999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEcCCC--CCCCccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000522 673 ---SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1445)
Q Consensus 673 ---~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkq 740 (1445)
.++|++|+| .+++.|++||+.++.. +. .++..++++.++|... ......+|||||||
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~q 148 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKK 148 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHH
Confidence 389999998 5778899999987532 12 2345566666666432 24567799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHh
Q 000522 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 741 Rv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~ 818 (1445)
|++||||++.+|+++||||||++||+...+.+.+. +..... .|+|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999888775 332122 2789999999999987 59999999999999999998
Q ss_pred HHHh
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~~~~ 822 (1445)
++..
T Consensus 228 ~~~~ 231 (283)
T PRK13636 228 EVFA 231 (283)
T ss_pred HHhc
Confidence 8754
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=320.84 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=160.5
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------e
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 673 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 673 (1445)
++++|+++.|+... ...++++|+||++++|++++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 2 l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 57889999986421 112469999999999999999999999999999999999999999999875 4
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000522 674 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lA 745 (1445)
++|++|+|.+++. |++||+.+... .+ .++..+.++..++... ......+||||||||++||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHH
Confidence 8999999998875 99999976421 11 2234555666655432 3446678999999999999
Q ss_pred HHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 746 Raly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
||++.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+.+.+.. ||++++|++|++.+.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999998888776 33212347899999999998765 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=316.57 Aligned_cols=194 Identities=22% Similarity=0.298 Sum_probs=163.8
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 3789999999964 369999999999999999999999999999999999999999999999998753 22 788999
Q ss_pred EEcCCCccc-CccHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000522 1302 VVPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~VpQdp~lF-~gTIReNLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1377 (1445)
+++|++.++ ..|+++|+.... ...++++.++++..++.+. .......||+|||||++||||++++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPL---------AHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH---------HcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999988765 579999986432 1234455666666655432 233334799999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHh-CCCcEEEEeccChhHHhhcCEEEEEeC
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILILDH 1430 (1445)
Q Consensus 1378 ILlLDEaTS~lD~~te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~~DrI~Vl~~ 1430 (1445)
+|||||||++||..+.+.+.+.|++. -+++|+|++||+++.+.. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999865 358999999999999998 99988854
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=362.92 Aligned_cols=215 Identities=23% Similarity=0.385 Sum_probs=173.8
Q ss_pred cEEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCeeCCCCChH
Q 000522 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVR 1294 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~~~ 1294 (1445)
.++++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999632 24699999999999999999999999999999999999987 799999999999877654
Q ss_pred h---hh-cceEEEcCCCc--ccC-ccHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCch---hhhcCCCCCCh
Q 000522 1295 D---LR-GRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLET---FVKESGISFSV 1360 (1445)
Q Consensus 1295 ~---lR-~~i~~VpQdp~--lF~-gTIReNLdp~----~~~sd~ei~~aL~~~~l~~~i~~lgLdt---~v~e~G~~LSg 1360 (1445)
. .| ++++||||+|. +++ -|+++|+... ...+.++..+ .+.+.++.+|++. .......+|||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 3 34 57999999985 444 4899987521 1112211111 1223333345532 23455668999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1361 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1361 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
|||||++|||||+.+|++||||||||+||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998753 37899999999998875 8999999999999999
Q ss_pred CCCC
Q 000522 1438 CAAA 1441 (1445)
Q Consensus 1438 ~p~~ 1441 (1445)
+|++
T Consensus 240 ~~~~ 243 (529)
T PRK15134 240 RAAT 243 (529)
T ss_pred CHHH
Confidence 8764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=329.11 Aligned_cols=203 Identities=27% Similarity=0.414 Sum_probs=167.8
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|+.. . +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~~-~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS-E---NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC-C---ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 468899999998532 1 2359999999999999999999999999999999999999999998875
Q ss_pred --eEEEEcCCCC--CCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++||+|+|. +++.|++|||.++.. ++.+ +..++++..++...+ .....+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 150 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQR 150 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHH
Confidence 3899999984 556799999987532 3332 244556666665433 34456999999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccC-CceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
++||||++.+|++++|||||++||+.+.+.+++. +.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKI-MVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988876 3321223 4899999999999888999999999999999998876
Q ss_pred Hh
Q 000522 821 AV 822 (1445)
Q Consensus 821 ~~ 822 (1445)
..
T Consensus 230 ~~ 231 (271)
T PRK13632 230 LN 231 (271)
T ss_pred hc
Confidence 43
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=327.61 Aligned_cols=206 Identities=25% Similarity=0.349 Sum_probs=168.7
Q ss_pred CCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC----
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---- 672 (1445)
Q Consensus 602 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~---- 672 (1445)
.+..++++|+++.|.. ..+|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 10 ~~~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 10 KNIIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CCceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3457899999999853 235999999999999999999999999999999999987 5899998765
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCCC---C---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 673 -----------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
.++|++|+|.++..|++||+.++... + +++..++++.+++...+. +.......+||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 156 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLS 156 (269)
T ss_pred cccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCC
Confidence 38999999999988999999976432 1 123344555555432221 23456678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeC------
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDK------ 808 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~------ 808 (1445)
||||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++
T Consensus 157 ~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET-MHE-LKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccc
Confidence 9999999999999999999999999999999999988876 333 3456899999999998865 999999996
Q ss_pred -----CEEEEecCHhHHHh
Q 000522 809 -----GQVKWIGSSADLAV 822 (1445)
Q Consensus 809 -----G~i~~~g~~~~~~~ 822 (1445)
|++++.|+.+++..
T Consensus 235 ~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 235 SGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccccceEEEeCCHHHHHh
Confidence 67899999888754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=328.36 Aligned_cols=205 Identities=25% Similarity=0.306 Sum_probs=167.0
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC-----
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~----- 672 (1445)
+..++++|+++.|.. ..+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 346899999999852 235999999999999999999999999999999999864 6899998764
Q ss_pred ----------eEEEEcCCCCCCCccHHHHHhcCCCCC--------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000522 673 ----------SIAYVPQVPWILSGTIRDNILFGKNYD--------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1445)
Q Consensus 673 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~~~--------~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~L 734 (1445)
.++|++|+|.++++|++||+.++.... +++..++++.+++..++. ...+....+|
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 165 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSL 165 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccC
Confidence 489999999999999999998753211 122334444444432221 2345677899
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEE
Q 000522 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 813 (1445)
Q Consensus 735 SGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~ 813 (1445)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL-ITE-LKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888775 333 3446899999999998765 99999999999999
Q ss_pred ecCHhHHHh
Q 000522 814 IGSSADLAV 822 (1445)
Q Consensus 814 ~g~~~~~~~ 822 (1445)
.|+++++..
T Consensus 244 ~~~~~~~~~ 252 (268)
T PRK14248 244 YDQTEQIFT 252 (268)
T ss_pred eCCHHHHHh
Confidence 999888753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=332.27 Aligned_cols=207 Identities=29% Similarity=0.405 Sum_probs=165.0
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|+.... ...++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 45889999999864210 112469999999999999999999999999999999999999999998754
Q ss_pred -------eEEEEcCCCC--CCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 -------SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 -------~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.|+|++|+|. +++.|++|||.++.. .+.+ +..+.++.++|..+ ..+....+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCH
Confidence 3899999984 667899999988642 1211 22233444443211 12456679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
|||||++||||++.+|+++||||||++||+.+.+.+++. +..... .++|+|++||+++.+.. ||++++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL-FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999888775 332112 37899999999998765 999999999999999
Q ss_pred cCHhHHHh
Q 000522 815 GSSADLAV 822 (1445)
Q Consensus 815 g~~~~~~~ 822 (1445)
|+++++..
T Consensus 233 g~~~~~~~ 240 (289)
T PRK13645 233 GSPFEIFS 240 (289)
T ss_pred CCHHHHhc
Confidence 99888753
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=328.61 Aligned_cols=201 Identities=24% Similarity=0.344 Sum_probs=165.5
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 46899999999852 2359999999999999999999999999999999999999999998875
Q ss_pred -----eEEEEcCCCCCCCc-cHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 -----SIAYVPQVPWILSG-TIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 -----~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
.++|++|++.+++. |++||+.++. ..+. ++..+.++.+++... ......+|||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 148 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGM 148 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 38999999999876 9999998642 1222 123344555555322 233456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecC
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~ 816 (1445)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL-ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999998888775 332112 37899999999998876 99999999999999999
Q ss_pred HhHHHh
Q 000522 817 SADLAV 822 (1445)
Q Consensus 817 ~~~~~~ 822 (1445)
++++..
T Consensus 228 ~~~~~~ 233 (269)
T PRK11831 228 AQALQA 233 (269)
T ss_pred HHHHhc
Confidence 988754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=317.52 Aligned_cols=190 Identities=27% Similarity=0.374 Sum_probs=158.0
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------eE
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 674 (1445)
++++|+++.|.. . ..|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 i~~~~l~~~~~~----~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRFSYGE----Q----PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEEEeCC----E----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 357889998852 1 2399999999999999999999999999999999999999999976 38
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCCC-------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000522 675 AYVPQVPWILSG-TIRDNILFGKNY-------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1445)
Q Consensus 675 ~y~~Q~p~l~~~-ti~~nI~~g~~~-------~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lAR 746 (1445)
+|++|+|.++.+ |++||+.++... ++++..++++.+++...... ...+||||||||++|||
T Consensus 73 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALAR 141 (211)
T ss_pred EEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHH
Confidence 999999999875 999999875321 13355667777777644433 33589999999999999
Q ss_pred HHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 747 aly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999988876 33211 237899999999999876 9999999999997653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=337.02 Aligned_cols=203 Identities=26% Similarity=0.373 Sum_probs=168.1
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1445)
...++++|++..|.. ..+|+|+||+|++|++++++||||||||||+++|+|+++|++|+|.++|
T Consensus 39 ~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 356999999999853 2359999999999999999999999999999999999999999999876
Q ss_pred --eEEEEcCCCCCC-CccHHHHHhc-CCC--CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 --SIAYVPQVPWIL-SGTIRDNILF-GKN--YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 --~i~y~~Q~p~l~-~~ti~~nI~~-g~~--~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.+|||||++.++ +.|++||+.+ +.. .+. ++.+++++.++|... ...+..+||||||||+
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv 181 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRL 181 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHH
Confidence 499999999987 4599999975 321 121 233344555544321 1334568999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
+||||+.++|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~-l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999988886 33312357899999999999875 9999999999999999999986
Q ss_pred hc
Q 000522 822 VS 823 (1445)
Q Consensus 822 ~~ 823 (1445)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 54
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=359.16 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=176.2
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999964 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEcCCCcc--c-------CccHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1302 VVPQSPFL--F-------EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1302 ~VpQdp~l--F-------~gTIReNLdp~~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
++||++.+ + .-|+++|+.... ..++++.++++.. |++.........||||||||++|||||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQF---------GITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHc---------CCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 99999753 2 348999886421 1223444455544 444434445567999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCC
Q 000522 1373 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1373 Lr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~ 1441 (1445)
+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999998763 47899999999999876 79999999999999988654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=326.40 Aligned_cols=202 Identities=26% Similarity=0.343 Sum_probs=166.9
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC-------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------- 672 (1445)
.++++|+++.|.. . ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYGN---Y---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEECC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 4789999999852 2 35999999999999999999999999999999999986 4799998765
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCCC----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.++|++|+|.+++.|++||+.++... ++ ++..++++.+++..+.. ...+..+.+|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 150 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSG 150 (251)
T ss_pred chHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCH
Confidence 38999999999999999999875321 11 23445566655532211 123456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|||||++||||++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET-LME-LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-HHH-HHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999998888776 433 3446899999999999765 9999999999999999
Q ss_pred CHhHHH
Q 000522 816 SSADLA 821 (1445)
Q Consensus 816 ~~~~~~ 821 (1445)
+.+++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14251 229 PTEEMF 234 (251)
T ss_pred CHHHHH
Confidence 988874
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=326.56 Aligned_cols=204 Identities=25% Similarity=0.349 Sum_probs=167.8
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-----
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG----- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~----- 672 (1445)
...++++|+++.|.. +++|+|+||+|++||+++|+|+||||||||+++|.|..+| ++|+|.++|
T Consensus 10 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 346899999998852 2359999999999999999999999999999999999875 799998754
Q ss_pred ----------eEEEEcCCCCCCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 673 ----------SIAYVPQVPWILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 673 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
.++|++|++.+++.|++||+.++.. .+.+ +.+++++.+++..++. ........+||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 156 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLS 156 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCC
Confidence 3899999999998999999987531 2222 2344555555532221 22345677999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
||||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL-IMN-LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988775 333 3457899999999998865 999999999999999
Q ss_pred cCHhHHH
Q 000522 815 GSSADLA 821 (1445)
Q Consensus 815 g~~~~~~ 821 (1445)
|+++++.
T Consensus 235 ~~~~~~~ 241 (258)
T PRK14268 235 GQTRQIF 241 (258)
T ss_pred CCHHHHh
Confidence 9988874
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=340.44 Aligned_cols=188 Identities=26% Similarity=0.393 Sum_probs=158.6
Q ss_pred cceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------------------eEEEEcCCCCC
Q 000522 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------------SIAYVPQVPWI 683 (1445)
Q Consensus 625 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------------------~i~y~~Q~p~l 683 (1445)
.+|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 359999999999999999999999999999999999999999999875 39999999999
Q ss_pred CC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEE
Q 000522 684 LS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755 (1445)
Q Consensus 684 ~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~il 755 (1445)
++ .|++|||.++.. .++ ++..++++..+|.... .....+|||||||||+||||++.+|+|+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 87 699999998742 222 3445566666665433 2344589999999999999999999999
Q ss_pred EEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHHHhc
Q 000522 756 MLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 756 llDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
|||||||+||+.+.+.+.+.+..-....++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999998888643211123789999999999865 5999999999999999999998643
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=321.51 Aligned_cols=201 Identities=22% Similarity=0.319 Sum_probs=162.2
Q ss_pred EEEEEEEEEeCCC-----CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC--C--eeCCCCCh
Q 000522 1223 IEFQNVTMRYKPS-----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD--G--LNIINTPV 1293 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~-----~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID--G--~di~~i~~ 1293 (1445)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+| | +++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred Hh---h-hcceEEEcCCCcccCc-cHHHhcCCC---CCCChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHH
Q 000522 1294 RD---L-RGRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQ 1364 (1445)
Q Consensus 1294 ~~---l-R~~i~~VpQdp~lF~g-TIReNLdp~---~~~sd~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQ 1364 (1445)
.. + +++++|+||+|.+|+. |+++|+... .....++..+ ...+.++.+|++.. ....+.+||+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 43 3 4679999999988875 999998642 1111111111 12333444466543 24456789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEE
Q 000522 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILIL 1428 (1445)
Q Consensus 1365 rl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl 1428 (1445)
|++||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+. -||+|+.+
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999998764 4899999999999886 58999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=324.76 Aligned_cols=203 Identities=23% Similarity=0.349 Sum_probs=166.6
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCC-----CeEEEEcC-------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~-----~G~i~~~~------- 672 (1445)
.++++|+++.|.. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 5789999999852 23599999999999999999999999999999999999987 69998754
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCCC----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.++|++|+|.+++.|++||+.++..+ .+ ++..++++..++...+. +..+..+.+|||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 150 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSG 150 (251)
T ss_pred cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCH
Confidence 39999999999989999999886421 11 12233334444432221 234667889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQE-LKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 999999999999999999999999999999999888775 433 3457899999999999876 8999999999999999
Q ss_pred CHhHHHh
Q 000522 816 SSADLAV 822 (1445)
Q Consensus 816 ~~~~~~~ 822 (1445)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14249 229 RTGEIFS 235 (251)
T ss_pred CHHHHHh
Confidence 9888743
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=330.84 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=166.4
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 3678999999864211 112469999999999999999999999999999999999999999998865
Q ss_pred -----eEEEEcCCC--CCCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
.|+|++|+| .+++.|++|||.++.. .+.+ +.+++++..++..+ .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~ 150 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQ 150 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 289999998 5788899999987532 2222 23344455555321 1244567899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCH
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 817 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~ 817 (1445)
|||++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998888876 33212247899999999998865 999999999999999998
Q ss_pred hHHHh
Q 000522 818 ADLAV 822 (1445)
Q Consensus 818 ~~~~~ 822 (1445)
+++..
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 88754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=317.28 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=126.5
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEEEcCCCc-ccCccHHHhcCCCCC-
Q 000522 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFEGSLRDNLDPFHM- 1323 (1445)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-lF~gTIReNLdp~~~- 1323 (1445)
+|..||.+|++||+|-||||++++|.|.++|++|+ ..+ -+++|=||--. -|+|||++-|.--..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45567999999999999999999999999999998 222 25888888442 389999987631111
Q ss_pred -CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHH
Q 000522 1324 -NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1402 (1445)
Q Consensus 1324 -~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~ 1402 (1445)
+.+.-.+ .+.++.+.|+..+...-.+|||||.||+++|-||.|++++.+||||+|.||.+-.-.+-++||+
T Consensus 429 ~~~~s~~~--------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 429 AFGSSYFK--------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred hcccchhH--------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 1111111 1223334556556666667999999999999999999999999999999999998888888887
Q ss_pred h--CCCcEEEEeccChhHHhh-cCEEEEEe
Q 000522 1403 E--CKGMTVITIAHRISTVLN-MDEILILD 1429 (1445)
Q Consensus 1403 ~--~~~~TvI~IaHrl~ti~~-~DrI~Vl~ 1429 (1445)
. -.++|.++|-|++-.+.. +||++|++
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 5 368999999999988765 69999986
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=323.10 Aligned_cols=199 Identities=26% Similarity=0.356 Sum_probs=164.2
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|+. +.+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 2 IEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred EEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHH
Confidence 568899998852 2359999999999999999999999999999999999999999998875
Q ss_pred --eEEEEcCCCCCCC-ccHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 --SIAYVPQVPWILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++|++|++.++. .|++||+.++. ..+. ++..++++..+++.. .......||||||||
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qr 144 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAER-----------AHHYPSELSGGQQQR 144 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHH-----------HhcChhhcCHHHHHH
Confidence 3899999998876 59999998753 1222 233445555544322 234557899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
++||||++.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKV-MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999888875 33212347899999999999875 999999999999999998876
Q ss_pred Hh
Q 000522 821 AV 822 (1445)
Q Consensus 821 ~~ 822 (1445)
..
T Consensus 224 ~~ 225 (240)
T PRK09493 224 IK 225 (240)
T ss_pred hc
Confidence 43
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=325.42 Aligned_cols=203 Identities=28% Similarity=0.355 Sum_probs=166.1
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCc--cC---CCeEEEEcC-------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--ML---THGSIHASG------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~--~~---~~G~i~~~~------- 672 (1445)
.++++|+++.|.. +.+|+|+||++++||+++|+||||||||||+++|.|.. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 5789999999852 23599999999999999999999999999999999985 36 589998765
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCC---C-Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 --------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.++|++|+|.+++.|++||+.++.. . ++ ++..++++.+++...+. +..+....+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 151 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSG 151 (252)
T ss_pred cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCH
Confidence 3899999999999999999986521 1 11 22333455555543222 234567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|||||++||||+..+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET-LLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH-HHH-HhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988875 333 3446899999999998765 9999999999999999
Q ss_pred CHhHHHh
Q 000522 816 SSADLAV 822 (1445)
Q Consensus 816 ~~~~~~~ 822 (1445)
+.+++..
T Consensus 230 ~~~~~~~ 236 (252)
T PRK14239 230 DTKQMFM 236 (252)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=387.44 Aligned_cols=216 Identities=24% Similarity=0.321 Sum_probs=185.8
Q ss_pred ccEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcce
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1300 (1445)
..|+++|++++|+++..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.. +....|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996444579999999999999999999999999999999999999999999999999975 567789999
Q ss_pred EEEcCCCcccCc-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1301 ~~VpQdp~lF~g-TIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1376 (1445)
+++||++.+|+. |++|||.++.. .+.++.++ ...+.++.+||+...+....+||||||||++|||||+.+|
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999975 99999975421 12222211 1223444446666666677789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhCCCcEEEEeccChhHHhh-cCEEEEEeCCeEeeecCCCCC
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILlLDEaTS~lD~~te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+|.++
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999988779999999999999875 899999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=325.08 Aligned_cols=203 Identities=24% Similarity=0.310 Sum_probs=169.3
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 672 (1445)
.++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 4 KMESKNLNLWYGE---K---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred EEEEEEeEEEECC---e---eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 4788999998852 2 359999999999999999999999999999999999875 799998865
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCCC----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.++|++|++.+++.|++||+.|+... +. ++..++++.+++..++.. ..+.....|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 150 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSG 150 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCH
Confidence 38999999999999999999876321 11 234566777766543332 23456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-L~~-~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL-MVE-LKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999988775 433 3446899999999998776 9999999999999999
Q ss_pred CHhHHHh
Q 000522 816 SSADLAV 822 (1445)
Q Consensus 816 ~~~~~~~ 822 (1445)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14270 229 KTEKIFL 235 (251)
T ss_pred CHHHHhc
Confidence 9888743
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=317.74 Aligned_cols=191 Identities=23% Similarity=0.390 Sum_probs=157.7
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------eEEEE
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------SIAYV 677 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------~i~y~ 677 (1445)
+++|+++.|.. +++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~ 75 (210)
T cd03269 2 EVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75 (210)
T ss_pred EEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEe
Confidence 57888888852 2359999999999999999999999999999999999999999999986 49999
Q ss_pred cCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000522 678 PQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1445)
Q Consensus 678 ~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly 749 (1445)
+|++.++.+ |++||+.++.. .+ +++..+.++..++.... .....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHh
Confidence 999988875 99999986421 11 22344555555554332 3456789999999999999999
Q ss_pred cCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 750 ~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988876 33212347899999999998865 9999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=319.85 Aligned_cols=193 Identities=26% Similarity=0.381 Sum_probs=157.4
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|+... ...++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 57889999985321 112469999999999999999999999999999999999999999998864
Q ss_pred ----eEEEEcCCCCCCC-ccHHHHHhcCC---CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000522 673 ----SIAYVPQVPWILS-GTIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1445)
Q Consensus 673 ----~i~y~~Q~p~l~~-~ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkq 740 (1445)
.++|++|+|.+++ .|++||+.++. .++ .++..+.++.++++... .....+|||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~q 148 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQ 148 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHH
Confidence 3899999998885 59999998742 122 22344555655554322 3445689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhhCCEEEEEeCCEEE
Q 000522 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVK 812 (1445)
Q Consensus 741 Rv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~~d~i~~l~~G~i~ 812 (1445)
|++||||++.+|+++||||||++||+.+.+.+.+. +.... ..++|+|++||+++.+..+|++++|++|+++
T Consensus 149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL-MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988876 33211 2378999999999998889999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=326.30 Aligned_cols=202 Identities=26% Similarity=0.350 Sum_probs=167.2
Q ss_pred CCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---------
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1445)
Q Consensus 602 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------- 672 (1445)
++..++++|+++.|.. . .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 8 ~~~~l~i~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 8 SDTTFALRNVSFRVPG---R---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSK 81 (265)
T ss_pred CCceEEEeeEEEEECC---E---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHH
Confidence 3456899999999852 2 359999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEcCCCCCCCc-cHHHHHhcCCC--------C---ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 ----SIAYVPQVPWILSG-TIRDNILFGKN--------Y---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 ----~i~y~~Q~p~l~~~-ti~~nI~~g~~--------~---~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.++|++|++-++.+ |++||+.++.. . ++++..+.++.+++...+. ....+|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 150 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSG 150 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCH
Confidence 38999999876654 99999987531 1 1234556667776654333 33458999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
|||||++||||+..+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+.. ||+|++|++|++++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~-l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL-VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 999999999999999999999999999999998888775 332112 37899999999999865 999999999999999
Q ss_pred cCHhHHH
Q 000522 815 GSSADLA 821 (1445)
Q Consensus 815 g~~~~~~ 821 (1445)
|+.+++.
T Consensus 230 ~~~~~~~ 236 (265)
T PRK10575 230 GTPAELM 236 (265)
T ss_pred cCHHHhc
Confidence 9988764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=325.83 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=166.4
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
+.++++|+++.|.. . .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE---H---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 45889999999852 2 359999999999999999999999999999999999999999998765
Q ss_pred ---------------eEEEEcCCCCCCCc-cHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCccccc
Q 000522 673 ---------------SIAYVPQVPWILSG-TIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIG 728 (1445)
Q Consensus 673 ---------------~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg 728 (1445)
.++|++|+|.++.. |++||+.++. ..++ ++..+.++..++...+ .+
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~ 147 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QG 147 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hh
Confidence 38999999999875 9999997642 1221 2334445554443221 13
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEe
Q 000522 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD 807 (1445)
Q Consensus 729 ~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~ 807 (1445)
.....||||||||++||||++++|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 45679999999999999999999999999999999999999988875 33312347899999999999886 99999999
Q ss_pred CCEEEEecCHhHHHh
Q 000522 808 KGQVKWIGSSADLAV 822 (1445)
Q Consensus 808 ~G~i~~~g~~~~~~~ 822 (1445)
+|++++.|+++++..
T Consensus 227 ~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 227 QGKIEEEGAPEQLFG 241 (257)
T ss_pred CCEEEEeCCHHHhhh
Confidence 999999999888743
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=374.56 Aligned_cols=208 Identities=24% Similarity=0.269 Sum_probs=150.6
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHH---------HHhcCCCCCC----c----EEEEC
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN---------ALFRLTPICG----G----QILVD 1284 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~---------~L~rl~~~~~----G----~I~ID 1284 (1445)
.++++|++. ..|+|+|++|++||.+||+|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 578888762 3799999999999999999999999999999 4445332211 1 24566
Q ss_pred CeeCCCCCh----H------hhhc---------ceE-----EEcCC------------------C---------------
Q 000522 1285 GLNIINTPV----R------DLRG---------RFA-----VVPQS------------------P--------------- 1307 (1445)
Q Consensus 1285 G~di~~i~~----~------~lR~---------~i~-----~VpQd------------------p--------------- 1307 (1445)
-.++..-+. . ++|+ +.+ +..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 655543222 1 4441 111 12221 1
Q ss_pred -----cccCc-cHHHhcCCCCC-----C-ChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHHHhc-
Q 000522 1308 -----FLFEG-SLRDNLDPFHM-----N-DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLARALL- 1373 (1445)
Q Consensus 1308 -----~lF~g-TIReNLdp~~~-----~-sd~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LARALL- 1373 (1445)
..+.+ ||.|||++... . +.+++.+.+ +.++.+||+.. .+....+||||||||++|||||+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhh
Confidence 13333 77777765421 0 112232222 13344588765 68888899999999999999998
Q ss_pred --cCCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhcCEEEEEe------CCeEeeecCCCCC
Q 000522 1374 --KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILD------HGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 --r~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl~------~G~vvE~G~p~~~ 1442 (1445)
++|+++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|++.
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 5999999999999999999999999998764 5889999999999998899999996 7999999998653
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=323.42 Aligned_cols=202 Identities=26% Similarity=0.353 Sum_probs=166.6
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 672 (1445)
.++++|+++.|.. . ++++|+||++++||+++|+|+||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD---F---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC---c---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4789999999853 2 359999999999999999999999999999999998763 689998865
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCCC----C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 --------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.++|++|+|.+++.|++||+.++... + +++..++++.+++..++. ...+..+.+|||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 149 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSG 149 (250)
T ss_pred cchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCH
Confidence 38999999999889999999876321 1 123344555555543332 224566789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL-IQE-LKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999888765 433 3457899999999998765 9999999999999999
Q ss_pred CHhHHH
Q 000522 816 SSADLA 821 (1445)
Q Consensus 816 ~~~~~~ 821 (1445)
+.+++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14240 228 DTVDLF 233 (250)
T ss_pred CHHHHH
Confidence 988864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=322.70 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=164.5
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|+. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 3 LYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred EEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 678999998852 2359999999999999999999999999999999999999999999875
Q ss_pred -eEEEEcCCCCCCCc-cHHHHHhcCCCCC---------------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000522 673 -SIAYVPQVPWILSG-TIRDNILFGKNYD---------------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735 (1445)
Q Consensus 673 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~~---------------~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LS 735 (1445)
.++|++|++.++++ |++||+.++...+ +++.++.++..+++ ........+||
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 145 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-----------DEADRLAGLLS 145 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCC
Confidence 38999999999986 9999998753211 12233344443332 22345667999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEe
Q 000522 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 814 (1445)
Q Consensus 736 GGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~ 814 (1445)
||||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL-LKS-LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH-HHH-HhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999999999999999999988875 332 3446899999999999875 999999999999999
Q ss_pred cCHhHHH
Q 000522 815 GSSADLA 821 (1445)
Q Consensus 815 g~~~~~~ 821 (1445)
|+++++.
T Consensus 224 ~~~~~~~ 230 (242)
T TIGR03411 224 GSLDQVQ 230 (242)
T ss_pred CCHHHHh
Confidence 9988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=358.73 Aligned_cols=214 Identities=24% Similarity=0.318 Sum_probs=146.5
Q ss_pred cEEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHh------cCCC----C-----------CCcE
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLTP----I-----------CGGQ 1280 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~------rl~~----~-----------~~G~ 1280 (1445)
.++++|++. ..|+|+||+|++||.+||+|+||||||||+.-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 488888862 2599999999999999999999999999998333 1111 1 1123
Q ss_pred EEECCeeCCCCC----------hHhhhcceEEEcC------CCcccCc--------------cHHHhcCCC---------
Q 000522 1281 ILVDGLNIINTP----------VRDLRGRFAVVPQ------SPFLFEG--------------SLRDNLDPF--------- 1321 (1445)
Q Consensus 1281 I~IDG~di~~i~----------~~~lR~~i~~VpQ------dp~lF~g--------------TIReNLdp~--------- 1321 (1445)
|.||-.+|..-+ .+.+|.-++=.|+ .+-.|+- .+.-++.+.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 556655554322 1234555544443 1222321 111111100
Q ss_pred ---CCCChH-----------------HHHHHHHHc----cH---HHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhc
Q 000522 1322 ---HMNDDL-----------------KIWSVLEKC----HV---KEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1373 (1445)
Q Consensus 1322 ---~~~sd~-----------------ei~~aL~~~----~l---~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1373 (1445)
..+.++ .+.++++-. .+ .+.++.+||+. .+++....|||||+||++|||+|.
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 011111 111222111 11 12233347875 468888899999999999999999
Q ss_pred c---CCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhhcCEEEEE------eCCeEeeecCCCCC
Q 000522 1374 K---SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1374 r---~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrI~Vl------~~G~vvE~G~p~~~ 1442 (1445)
+ +|+++||||||++||+.+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|++.
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 489999999999999999999999998764 589999999999999999999999 79999999999764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=315.29 Aligned_cols=192 Identities=19% Similarity=0.253 Sum_probs=160.4
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 478999999964 46999999999999999999999999999999999999999999999999998765 456789999
Q ss_pred EcCCCcccC-ccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000522 1303 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 VpQdp~lF~-gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1378 (1445)
+||++.+|+ .|+++|+..... ..++++.++++..++.+. ......+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF---------EDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH---------hcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 699999864321 112345556666555443 3334457999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHh-CCCcEEEEeccChhHHhhcCEEEE
Q 000522 1379 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILI 1427 (1445)
Q Consensus 1379 LlLDEaTS~lD~~te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~~DrI~V 1427 (1445)
++|||||++||..+.+.+.+.|++. .++.|+|++||+...+. ||+++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999875 35789999999985443 476654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=319.25 Aligned_cols=199 Identities=23% Similarity=0.339 Sum_probs=162.5
Q ss_pred CceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 672 (1445)
+..++++|+++.|.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 5 SPLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred CceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH
Confidence 346899999999852 2359999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcCCCCCCCccHHHHHhcCCCC-----ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHH
Q 000522 673 ---SIAYVPQVPWILSGTIRDNILFGKNY-----DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~~ti~~nI~~g~~~-----~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~l 744 (1445)
.++|++|+|++++.|++||+.++..+ ++++..+.++.+++.. +.......+||||||||++|
T Consensus 79 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~l 148 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISL 148 (225)
T ss_pred HHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHH
Confidence 38999999999989999999864221 2233445555555532 22345677999999999999
Q ss_pred HHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhhCCEEEEEe-CCEEEEecCHh
Q 000522 745 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMD-KGQVKWIGSSA 818 (1445)
Q Consensus 745 ARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~~d~i~~l~-~G~i~~~g~~~ 818 (1445)
|||++++|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+.+.++.||++++|+ ++..+++|+|+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 149 IRNLQFMPKVLLLDEITSALDESNKHNVNEI-IHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999998877765 33211 23789999999999998899999995 56666677664
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=327.18 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=167.5
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.. ..+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSGS-----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCCC-----CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 36789999998532 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCC--CCCccHHHHHhcCC---CCChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 -SIAYVPQVPW--ILSGTIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 -~i~y~~Q~p~--l~~~ti~~nI~~g~---~~~~~----~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.++||+|+|. +++.|++||+.++. .++++ ++++.++.+++...+. .....||||||||+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl 146 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRV 146 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHH
Confidence 3899999983 67789999998753 23332 3556667666654333 34468999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhh-hCCEEEEEeCCEEEEecCHhHH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
+||||++.+|+++||||||++||+.+.+.+.+. +..... ++.|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999998888775 332112 3789999999999985 5999999999999999999988
Q ss_pred Hh
Q 000522 821 AV 822 (1445)
Q Consensus 821 ~~ 822 (1445)
..
T Consensus 226 ~~ 227 (277)
T PRK13652 226 FL 227 (277)
T ss_pred hc
Confidence 54
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=327.88 Aligned_cols=204 Identities=26% Similarity=0.347 Sum_probs=169.0
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+.... .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKESD---VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCCCc---CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 4789999999964211 2369999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000522 673 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742 (1445)
Q Consensus 673 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv 742 (1445)
.++|++|+|. +++.|+.|||.++.. ... ++++++++.+++.... ......||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRV 149 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHH
Confidence 3899999984 667899999987532 222 2345566666664322 234568999999999
Q ss_pred HHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHHH
Q 000522 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821 (1445)
Q Consensus 743 ~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~~ 821 (1445)
+||||++.+|+++||||||++||+.+.+.+.+. +..... .|.|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999988875 332122 278999999999999889999999999999999998876
Q ss_pred hc
Q 000522 822 VS 823 (1445)
Q Consensus 822 ~~ 823 (1445)
..
T Consensus 229 ~~ 230 (277)
T PRK13642 229 AT 230 (277)
T ss_pred cC
Confidence 43
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=333.03 Aligned_cols=210 Identities=21% Similarity=0.302 Sum_probs=169.7
Q ss_pred CceEEEEccEEecccCCc-------cccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC---
Q 000522 603 DMAVIMQDATCSWYCNNE-------EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672 (1445)
Q Consensus 603 ~~~i~~~~~~f~w~~~~~-------~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--- 672 (1445)
+..++++|++..|..... .....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 356889999998863211 0113479999999999999999999999999999999999999999998865
Q ss_pred -------------eEEEEcCCC--CCC-CccHHHHHhcCC-----CCCh----hhHHHHHHHhcchHHHhhccCCCcccc
Q 000522 673 -------------SIAYVPQVP--WIL-SGTIRDNILFGK-----NYDP----QSYSETLKACTLDVDISLMVGGDMAYI 727 (1445)
Q Consensus 673 -------------~i~y~~Q~p--~l~-~~ti~~nI~~g~-----~~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~v 727 (1445)
.|+||+|+| .++ ..||.|||.++. ..++ ++..+.++..++..+. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~ 155 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------I 155 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------h
Confidence 499999999 355 469999997531 2332 2334556666663321 2
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhhh-CCEEEE
Q 000522 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVV 805 (1445)
Q Consensus 728 g~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-~d~i~~ 805 (1445)
......|||||||||+||||++.+|+++|+||||++||+.+...+++. +.... ..+.|+|+|||+++.+.. ||+|++
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL-LQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 455679999999999999999999999999999999999999999886 33211 237899999999999876 999999
Q ss_pred EeCCEEEEecCHhHHHhc
Q 000522 806 MDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 806 l~~G~i~~~g~~~~~~~~ 823 (1445)
|++|+|++.|+.+++...
T Consensus 235 l~~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 235 MYLGHAVELGTYDEVYHN 252 (331)
T ss_pred EECCEEEEEcCHHHHHcC
Confidence 999999999999988654
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=326.08 Aligned_cols=205 Identities=26% Similarity=0.357 Sum_probs=169.4
Q ss_pred CCceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC----
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---- 672 (1445)
Q Consensus 602 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~---- 672 (1445)
....++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---K---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCcEEEEEEEEEEECC---e---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 3456899999999852 2 35999999999999999999999999999999999987 4899998754
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCCC----C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000522 673 -----------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 733 (1445)
Q Consensus 673 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~ 733 (1445)
.++|++|++.+++.|++||+.++..+ . +++..++++..++..++. +..+..+.+
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 168 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFG 168 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCccc
Confidence 48999999999989999999875321 1 123445555555544332 234667889
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEE
Q 000522 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 812 (1445)
Q Consensus 734 LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~ 812 (1445)
|||||||||+||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-L~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL-ITE-LKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV 246 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998888775 433 3346899999999998765 9999999999999
Q ss_pred EecCHhHHH
Q 000522 813 WIGSSADLA 821 (1445)
Q Consensus 813 ~~g~~~~~~ 821 (1445)
+.|+++++.
T Consensus 247 ~~g~~~~~~ 255 (272)
T PRK14236 247 EYGDTDTLF 255 (272)
T ss_pred ecCCHHHHh
Confidence 999988874
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=320.27 Aligned_cols=197 Identities=28% Similarity=0.421 Sum_probs=161.8
Q ss_pred EEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--------------
Q 000522 607 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 672 (1445)
Q Consensus 607 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 672 (1445)
+++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (230)
T TIGR03410 2 EVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75 (230)
T ss_pred EEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHh
Confidence 57889998852 2359999999999999999999999999999999999999999999875
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCCC-C---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHH
Q 000522 673 SIAYVPQVPWILSG-TIRDNILFGKNY-D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1445)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~~-~---~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARa 747 (1445)
.++|++|++.+++. |++||+.++... . .+.+.++++..+. ..........+||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred CeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHH
Confidence 38999999998876 999999875321 1 1223334443321 1122345667899999999999999
Q ss_pred HccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHH
Q 000522 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 748 ly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
++.+|++++|||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRV-IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999988876 332122 37899999999999885 999999999999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=323.90 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=169.3
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCcc-----CCCeEEEEcC------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------ 672 (1445)
..++++|+++.|.. . ++|+|+||++++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS---F---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC---E---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 36899999999852 2 35999999999999999999999999999999999876 4799998765
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCCC---C---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000522 673 ---------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1445)
Q Consensus 673 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGG 737 (1445)
.++|++|+|.+++.|++|||.++... . +++..++++.+++..++.. ..+..+.+||||
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 155 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGG 155 (264)
T ss_pred ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHH
Confidence 38999999999988999999876432 1 2334455666666544431 235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEe---------
Q 000522 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD--------- 807 (1445)
Q Consensus 738 QkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~--------- 807 (1445)
||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL-MHE-LKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999988775 333 3446899999999998775 99999998
Q ss_pred CCEEEEecCHhHHHh
Q 000522 808 KGQVKWIGSSADLAV 822 (1445)
Q Consensus 808 ~G~i~~~g~~~~~~~ 822 (1445)
+|++++.|+.+|+..
T Consensus 234 ~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 234 YGYLVEFDRTEKIFN 248 (264)
T ss_pred CceEEEeCCHHHHHh
Confidence 799999999988854
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=318.21 Aligned_cols=197 Identities=25% Similarity=0.298 Sum_probs=161.4
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|..... ..++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEH--ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCCc--ceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 35889999999864211 11359999999999999999999999999999999999999999998764
Q ss_pred ------eEEEEcCCCCCCCc-cHHHHHhcCC---CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000522 673 ------SIAYVPQVPWILSG-TIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738 (1445)
Q Consensus 673 ------~i~y~~Q~p~l~~~-ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQ 738 (1445)
.++|++|+|.++.. |++||+.++. ..+ +++.++.++.+++...+. ....+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge 151 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGE 151 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHH
Confidence 38999999998875 9999998642 111 234566677777654433 2345899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeCCEEEEe
Q 000522 739 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWI 814 (1445)
Q Consensus 739 kqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~ 814 (1445)
|||++||||++.+|+++||||||++||+...+.+.+. +..... .++|+|++||+.+.+..||++++|++|++++.
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999998888876 332112 37899999999999888999999999998753
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=340.70 Aligned_cols=187 Identities=25% Similarity=0.388 Sum_probs=157.9
Q ss_pred ceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------------eEEEEcCCCCCCC-cc
Q 000522 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILS-GT 687 (1445)
Q Consensus 626 ~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------------~i~y~~Q~p~l~~-~t 687 (1445)
+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .++||+|++.++. .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 59999999999999999999999999999999999999999999865 4899999999886 49
Q ss_pred HHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCC
Q 000522 688 IRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV 760 (1445)
Q Consensus 688 i~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~ 760 (1445)
++|||.++.. ++ .++..++++.++|..... ....+|||||||||+||||++.+|+++|||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999997632 22 234456667777654333 34458999999999999999999999999999
Q ss_pred CcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHhc
Q 000522 761 LSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 761 ~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
|++||+.+.+.+.+.+..-....++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999988876322111247899999999998765 999999999999999999988653
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=364.41 Aligned_cols=197 Identities=26% Similarity=0.342 Sum_probs=164.9
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCeeCCCCChHhhhcceEEEcCCCcccCc-c
Q 000522 1237 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-S 1313 (1445)
Q Consensus 1237 ~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~--~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~g-T 1313 (1445)
+.+|+|+|+++++||++||+||||||||||+++|.|+.+|. +|+|.+||.++. ...+++++||||++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 899999999874 2456789999999999975 9
Q ss_pred HHHhcCCCC------CCChHHHHHHHHHccHHHHHHhCCC----chhhhc-CCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000522 1314 LRDNLDPFH------MNDDLKIWSVLEKCHVKEEVEAVGL----ETFVKE-SGISFSVGQRQLICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1314 IReNLdp~~------~~sd~ei~~aL~~~~l~~~i~~lgL----dt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILlLD 1382 (1445)
+||||.+.. ..++++..+. ..+.++.+|| ||.+|+ ....||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999996421 1233332211 2234444444 666764 35679999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhH-H-hhcCEEEEEeCCeEeeecCCCCC
Q 000522 1383 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1383 EaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~t-i-~~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
|||++||..+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|++++.
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHH
Confidence 9999999999999999998764 58999999999984 4 55899999999999999998654
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=318.76 Aligned_cols=197 Identities=25% Similarity=0.292 Sum_probs=156.4
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
+.++|++.+|+. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... +....
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 677888888864 4699999999999999999999999999999999999999999999999986421 11111
Q ss_pred EcCCCcccCccHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000522 1303 VPQSPFLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1379 (1445)
Q Consensus 1303 VpQdp~lF~gTIReNLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1379 (1445)
+..+.|+++|+..... .+.++..+ ...+..+.+|++.........||+|||||++||||++++|++|
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 164 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL 164 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2235699999864311 12222111 1122233335555555555689999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHhh-cCEEEEEeCCeEeeec
Q 000522 1380 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437 (1445)
Q Consensus 1380 lLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrI~Vl~~G~vvE~G 1437 (1445)
||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998764 46899999999999875 8999999999999876
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=333.66 Aligned_cols=187 Identities=24% Similarity=0.342 Sum_probs=159.1
Q ss_pred cceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------eEEEEcCCCCCCCc-cHHHH
Q 000522 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYVPQVPWILSG-TIRDN 691 (1445)
Q Consensus 625 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~i~y~~Q~p~l~~~-ti~~n 691 (1445)
++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .+||++|++.++.. |++||
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 359999999999999999999999999999999999999999999976 38999999998876 99999
Q ss_pred HhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCc
Q 000522 692 ILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 764 (1445)
Q Consensus 692 I~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~l 764 (1445)
+.+... .+ .++.+++++.++|.... .....+||||||||++||||++++|++++|||||++|
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 986421 11 23456677777765432 2345689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHhc
Q 000522 765 DAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 765 D~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~~ 823 (1445)
|+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 156 D~~~~~~l~~~-l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDY-IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999888876 33312347899999999999875 999999999999999999998654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=325.84 Aligned_cols=203 Identities=25% Similarity=0.382 Sum_probs=167.0
Q ss_pred ceEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 672 (1445)
..++++|+++.|.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~i~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA----SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCCC----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 3589999999986321 2359999999999999999999999999999999999999999999976
Q ss_pred --eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++|++|+|+ +++.|+++|+.++.. ... ++.+++++..++.... .....+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 150 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQR 150 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHH
Confidence 3899999996 445699999988632 122 2334445555554322 34567899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhhCCEEEEEeCCEEEEecCHhHH
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~~d~i~~l~~G~i~~~g~~~~~ 820 (1445)
++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDL-VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 333122 37899999999999888999999999999999999887
Q ss_pred Hh
Q 000522 821 AV 822 (1445)
Q Consensus 821 ~~ 822 (1445)
..
T Consensus 230 ~~ 231 (269)
T PRK13648 230 FD 231 (269)
T ss_pred hc
Confidence 54
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=322.81 Aligned_cols=203 Identities=26% Similarity=0.348 Sum_probs=165.6
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccC-----CCeEEEEcC-------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 672 (1445)
.++++|+++.|.. . ++++|+||++++||+++|+|+||||||||+++|.|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ---V---EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC---e---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 4788999998852 2 359999999999999999999999999999999999974 799998875
Q ss_pred ------eEEEEcCCCCCC-CccHHHHHhcCCCC-----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 ------SIAYVPQVPWIL-SGTIRDNILFGKNY-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 ------~i~y~~Q~p~l~-~~ti~~nI~~g~~~-----~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.|||++|+|.++ +.|++||+.++... +. ++..+.++.+++...+. ........+|||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 149 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSG 149 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCH
Confidence 489999999755 56999999875321 11 23345556666543221 123455678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhh-hCCEEEEEeCCEEEEec
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g 815 (1445)
|||||++||||+..+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|++.+.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL-FLE-LKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999988876 333 345789999999999886 49999999999999999
Q ss_pred CHhHHHh
Q 000522 816 SSADLAV 822 (1445)
Q Consensus 816 ~~~~~~~ 822 (1445)
+++++..
T Consensus 228 ~~~~~~~ 234 (250)
T PRK14247 228 PTREVFT 234 (250)
T ss_pred CHHHHHc
Confidence 9888743
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=294.77 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChHhhhcceEE
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1302 (1445)
|+.+|++++-. .+.+|+|+||+++|||.+||+||||||||||+++|.|.+.|++|++.++|+|+++.+..++-++-++
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 67889987764 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcc-cCccHHHhcCCCC----C---CChHH--HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000522 1303 VPQSPFL-FEGSLRDNLDPFH----M---NDDLK--IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372 (1445)
Q Consensus 1303 VpQdp~l-F~gTIReNLdp~~----~---~sd~e--i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1372 (1445)
.||+..+ |+=|++|-+.++. . ..+++ ..+++.++++..+- +..-..|||||+||+.|||.|
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la---------~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA---------GRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh---------ccchhhcCchHHHHHHHHHHH
Confidence 9999876 8889999875432 1 12333 56678887765432 122235999999999999999
Q ss_pred cc------CCCEEEEeccccCCCHHHHHHHHHHHHHhC-CCcEEEEeccChhHHh-hcCEEEEEeCCeEeeecCCCCC
Q 000522 1373 LK------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1373 Lr------~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrI~Vl~~G~vvE~G~p~~~ 1442 (1445)
.. ++++|+||||||+||..-...+.++.|+.. +++.|+.|-|+|+... .||||++|.+|||+..|+|++-
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 85 346999999999999999999999998864 5899999999999665 5799999999999999999863
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=284.63 Aligned_cols=209 Identities=26% Similarity=0.334 Sum_probs=175.2
Q ss_pred cEEEEEEEEEeCCC--CCccceeeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCeeCCCCChH---hh
Q 000522 1222 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL 1296 (1445)
Q Consensus 1222 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~l 1296 (1445)
.|+.++++..-+.. .-.+|+||+|.|++||.+||||+||||||||+..|.|+-+|++|+|.+.|.++.+++-+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 57888887776543 33689999999999999999999999999999999999999999999999999988854 45
Q ss_pred h-cceEEEcCCCcccCc-cHHHhcC-CC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000522 1297 R-GRFAVVPQSPFLFEG-SLRDNLD-PF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1370 (1445)
Q Consensus 1297 R-~~i~~VpQdp~lF~g-TIReNLd-p~---~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1370 (1445)
| +++++|.|.-.|.+. |--||.. |. ++.+.+.- ....+.++..||...+..-..+|||||+||++|||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~------~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR------AGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHH------HHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 5 579999999988764 8999974 32 22121111 11233444457777788778899999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHhC--CCcEEEEeccChhHHhhcCEEEEEeCCeEeee
Q 000522 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPHC 1436 (1445)
Q Consensus 1371 ALLr~~~ILlLDEaTS~lD~~te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrI~Vl~~G~vvE~ 1436 (1445)
|+.-+|+||+-||||-|||.+|-+.|-+.+-+.- .+.|.++|||+......|||++-|.+|+++|.
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999999999999886543 58899999999999999999999999999864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.50 Aligned_cols=198 Identities=24% Similarity=0.403 Sum_probs=165.2
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|++++|.. . .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (255)
T PRK11231 3 LRTENLTVGYGT---K---RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76 (255)
T ss_pred EEEEeEEEEECC---E---EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhh
Confidence 678999999852 2 359999999999999999999999999999999999999999999876
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCC-----C------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000522 673 SIAYVPQVPWILSG-TIRDNILFGKN-----Y------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1445)
Q Consensus 673 ~i~y~~Q~p~l~~~-ti~~nI~~g~~-----~------~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkq 740 (1445)
.++|++|++.++.+ |++||+.++.. + +.++..++++.+++.... ......|||||||
T Consensus 77 ~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~q 145 (255)
T PRK11231 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQ 145 (255)
T ss_pred heEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHH
Confidence 39999999988876 99999987631 1 122345555655554322 3456789999999
Q ss_pred HHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhH
Q 000522 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 819 (1445)
Q Consensus 741 Rv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 819 (1445)
|++||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+++..|++++
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL-MRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHH
Confidence 99999999999999999999999999998888876 33212347899999999998765 99999999999999999887
Q ss_pred HH
Q 000522 820 LA 821 (1445)
Q Consensus 820 ~~ 821 (1445)
+.
T Consensus 225 ~~ 226 (255)
T PRK11231 225 VM 226 (255)
T ss_pred hc
Confidence 64
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=318.28 Aligned_cols=188 Identities=23% Similarity=0.400 Sum_probs=155.7
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|+.+ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (214)
T TIGR02673 2 IEFHNVSKAYPGG-----VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76 (214)
T ss_pred EEEEeeeEEeCCC-----ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 5788999988421 2359999999999999999999999999999999999999999998765
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000522 673 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqR 741 (1445)
.++|++|+|.++. .|++||+.++.. ++ +++.++.++..++..... ....+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr 145 (214)
T TIGR02673 77 LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQR 145 (214)
T ss_pred HHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 4899999999886 599999987521 22 234556666666654333 2335899999999
Q ss_pred HHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCE
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQ 810 (1445)
Q Consensus 742 v~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~ 810 (1445)
++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDL-LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999988876 33212347899999999999876 99999999984
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=316.69 Aligned_cols=197 Identities=27% Similarity=0.403 Sum_probs=164.5
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-----------eE
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 674 (1445)
++++|++++|.. . ..|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~-----~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 73 (232)
T PRK10771 2 LKLTDITWLYHH-----L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV 73 (232)
T ss_pred eEEEEEEEEECC-----c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccE
Confidence 578999999852 1 2489999999999999999999999999999999999999999876 38
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC--C--C---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000522 675 AYVPQVPWILSG-TIRDNILFGKN--Y--D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1445)
Q Consensus 675 ~y~~Q~p~l~~~-ti~~nI~~g~~--~--~---~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lAR 746 (1445)
+|++|+|.++.+ |++|||.++.. . . +++..++++..+++..+.. ....||||||||++|||
T Consensus 74 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 142 (232)
T PRK10771 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR-----------LPGQLSGGQRQRVALAR 142 (232)
T ss_pred EEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhC-----------CcccCCHHHHHHHHHHH
Confidence 999999998875 99999987531 1 1 2345566777777654443 33589999999999999
Q ss_pred HHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEEEeCCEEEEecCHhHHHh
Q 000522 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 747 aly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g~~~~~~~ 822 (1445)
|++++|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||++++|++|++.+.|+++++..
T Consensus 143 al~~~p~lllLDEP~~gLD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLTL-VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999888775 332122 37899999999999875 99999999999999999888753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=323.78 Aligned_cols=199 Identities=27% Similarity=0.347 Sum_probs=163.6
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|.. . .+|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG---Q---TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC---e---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 3788999999852 2 359999999999999999999999999999999999999999997753
Q ss_pred ---------eEEEEcCCCCCCC-ccHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000522 673 ---------SIAYVPQVPWILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734 (1445)
Q Consensus 673 ---------~i~y~~Q~p~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~L 734 (1445)
.++|++|+|.+++ .|++||+.++. ..+. ++..+.++..++.. .......+|
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~L 145 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYPRRL 145 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCChhhC
Confidence 4899999998886 59999997642 1221 23334444444432 224566799
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEE
Q 000522 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 813 (1445)
Q Consensus 735 SGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~ 813 (1445)
|||||||++||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT-IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888875 33212347899999999999875 99999999999999
Q ss_pred ecCHhHHH
Q 000522 814 IGSSADLA 821 (1445)
Q Consensus 814 ~g~~~~~~ 821 (1445)
.|+.+++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988864
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=301.41 Aligned_cols=161 Identities=25% Similarity=0.393 Sum_probs=144.1
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC--eEEEEcCCCCC
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWI 683 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~p~l 683 (1445)
++++|+++.|+.. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++ .++|++|+|.+
T Consensus 1 i~~~~~~~~~~~~-----~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDG-----RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCC-----CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc
Confidence 3578999988532 2359999999999999999999999999999999999999999999987 79999999999
Q ss_pred CCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcC
Q 000522 684 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSA 763 (1445)
Q Consensus 684 ~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~ 763 (1445)
++.|++||+.++ ....||||||||++||||++++|++++|||||++
T Consensus 76 ~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~ 121 (166)
T cd03223 76 PLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSA 121 (166)
T ss_pred ccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 989999999864 2368999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhhCCEEEEEeCC
Q 000522 764 VDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 809 (1445)
Q Consensus 764 lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~~d~i~~l~~G 809 (1445)
||+.+.+.+.+. +.. . ++|+|++||+.+....||++++|++|
T Consensus 122 LD~~~~~~l~~~-l~~-~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 122 LDEESEDRLYQL-LKE-L--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred cCHHHHHHHHHH-HHH-h--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999988876 332 2 58999999999988789999999874
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.75 Aligned_cols=198 Identities=25% Similarity=0.377 Sum_probs=162.6
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|.. +.+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 3678999999853 2359999999999999999999999999999999999999999998864
Q ss_pred -------eEEEEcCCCCCCCc-cHHHHHhcCC----CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000522 673 -------SIAYVPQVPWILSG-TIRDNILFGK----NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736 (1445)
Q Consensus 673 -------~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSG 736 (1445)
.++|++|+|.++.+ |++|||.++. ... .++..+.++..+++. .......+|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~ 144 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHLSG 144 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCH
Confidence 38999999998875 9999997421 111 123344444444433 23445569999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcccCCceEEEEccCchhhhh-CCEEEEEeCCEEEEec
Q 000522 737 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 737 GQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-~d~i~~l~~G~i~~~g 815 (1445)
|||||++||||++.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+.+.+.. ||++++|++|++++.|
T Consensus 145 G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999888875 33212347899999999999875 9999999999999999
Q ss_pred CHhHH
Q 000522 816 SSADL 820 (1445)
Q Consensus 816 ~~~~~ 820 (1445)
+++++
T Consensus 224 ~~~~~ 228 (242)
T PRK11124 224 DASCF 228 (242)
T ss_pred CHHHh
Confidence 88765
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.87 Aligned_cols=199 Identities=21% Similarity=0.295 Sum_probs=163.8
Q ss_pred eEEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 672 (1445)
.++++|+++.|+. .++|+|+||++++|++++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (255)
T PRK11300 5 LLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78 (255)
T ss_pred eEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHH
Confidence 5889999999852 2359999999999999999999999999999999999999999999876
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC-----------C-----Ch------hhHHHHHHHhcchHHHhhccCCCcccc
Q 000522 673 --SIAYVPQVPWILSG-TIRDNILFGKN-----------Y-----DP------QSYSETLKACTLDVDISLMVGGDMAYI 727 (1445)
Q Consensus 673 --~i~y~~Q~p~l~~~-ti~~nI~~g~~-----------~-----~~------~~~~~v~~~~~l~~d~~~~~~gd~t~v 727 (1445)
.++|++|+|.++.. |++|||.++.. + ++ ++.++.++..++. ...
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~ 147 (255)
T PRK11300 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHA 147 (255)
T ss_pred hcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhh
Confidence 28899999999876 99999997531 0 00 1222333333332 234
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCCcCcCHHHHHHHHHHhhcCccc-CCceEEEEccCchhhhh-CCEEEE
Q 000522 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVV 805 (1445)
Q Consensus 728 g~~g~~LSGGQkqRv~lARaly~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-~d~i~~ 805 (1445)
+....+||||||||++||||++.+|+++||||||++||+...+.+.+. +..... .++|+|++||+++.+.. ||++++
T Consensus 148 ~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 226 (255)
T PRK11300 148 NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL-IAELRNEHNVTVLLIEHDMKLVMGISDRIYV 226 (255)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHhhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 567789999999999999999999999999999999999998888776 332122 37899999999999865 999999
Q ss_pred EeCCEEEEecCHhHHH
Q 000522 806 MDKGQVKWIGSSADLA 821 (1445)
Q Consensus 806 l~~G~i~~~g~~~~~~ 821 (1445)
|++|++++.|+.+++.
T Consensus 227 l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 227 VNQGTPLANGTPEEIR 242 (255)
T ss_pred EECCeEEecCCHHHHh
Confidence 9999999999988764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.83 Aligned_cols=199 Identities=25% Similarity=0.351 Sum_probs=165.0
Q ss_pred EEEEccEEecccCCccccccceeeeeeEeeCCCEEEEEcCCCCcHHHHHHHHhcCccCCCeEEEEcC-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 672 (1445)
++++|+++.|+. +.+|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (258)
T PRK13548 3 LEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76 (258)
T ss_pred EEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhh
Confidence 678999998852 2359999999999999999999999999999999999999999999876
Q ss_pred eEEEEcCCCCC-CCccHHHHHhcCCC-C--C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHH
Q 000522 673 SIAYVPQVPWI-LSGTIRDNILFGKN-Y--D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 744 (1445)
Q Consensus 673 ~i~y~~Q~p~l-~~~ti~~nI~~g~~-~--~----~~~~~~v~~~~~l~~d~~~~~~gd~t~vg~~g~~LSGGQkqRv~l 744 (1445)
.++|++|++.+ ++.|++||+.++.. . + +++.+++++..++.... .....+||||||||++|
T Consensus 77 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~l 145 (258)
T PRK13548 77 RRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQL 145 (258)
T ss_pred heEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHH
Confidence 38999999987 56799999987532 1 1 22345556666654322 34557999999999999
Q ss_pred HHHHc------cCCCEEEEcCCCcCcCHHHHHHHHHHhhcCcc-cCCceEEEEccCchhhh-hCCEEEEEeCCEEEEecC
Q 000522 745 ARAVY------HGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 745 ARaly------~~~~illlDe~~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~~d~i~~l~~G~i~~~g~ 816 (1445)
|||++ .+|++++|||||++||+.+.+.+.+. +.... .+++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 146 a~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 146 ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL-ARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred HHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCC
Confidence 99999 59999999999999999999888775 33312 35789999999999987 499999999999999999
Q ss_pred HhHHHh
Q 000522 817 SADLAV 822 (1445)
Q Consensus 817 ~~~~~~ 822 (1445)
++++..
T Consensus 225 ~~~~~~ 230 (258)
T PRK13548 225 PAEVLT 230 (258)
T ss_pred HHHHhC
Confidence 887643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1445 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-41 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-17 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-40 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-31 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-39 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-36 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-35 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-35 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-34 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-32 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-32 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-31 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-31 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-31 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-31 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-31 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-31 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-31 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-30 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-10 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-30 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-11 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-30 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-30 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-30 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-30 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 9e-13 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-30 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-11 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-29 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-11 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-29 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-29 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-29 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-29 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-28 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-12 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-28 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-12 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-28 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-13 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-28 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-10 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-28 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-25 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-21 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-20 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-20 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-19 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 7e-11 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 7e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-09 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 7e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-07 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 5e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 349 bits (897), Expect = e-100
Identities = 213/1145 (18%), Positives = 443/1145 (38%), Gaps = 145/1145 (12%)
Query: 374 SDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI------ 427
GE+ T ++ D + ++ +IG+ + F G I
Sbjct: 163 DVGELNTRLTDDV-------SKINEGIG--DKIGMFFQAM-----ATFFGGFIIGFTRGW 208
Query: 428 -----TILLIPVNKWIANLIANATEKMMKQKDERIRRTG----EILTHIRTLKMYGWEQI 478
+ + PV A + A ++ + G E+L IRT+ +G ++
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268
Query: 479 ----FSSWLMKTRSSEVKHLSTRKYLDA--WCVFFWATTPTLFSL-FTFGLFALMGHQLD 531
+++ L + + +K T + + + + ++L F +G ++ +
Sbjct: 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS-----YALAFWYGTSLVISKEYS 323
Query: 532 AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSY 591
V T + I +A + + + + + + + +S S
Sbjct: 324 IGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKII-------DNKPSIDSFSK 376
Query: 592 ISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 651
+ N + ++ S Y + +E Q +L ++L + G VA++G G GKS
Sbjct: 377 SGHKPDNIQGN---LEFKNIHFS-YPSRKEVQ--ILKGLNLKVKSGQTVALVGNSGCGKS 430
Query: 652 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY 698
+ + + G + G I V Q P + + TI +NI +G+
Sbjct: 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-- 488
Query: 699 DPQSYSETLKACTL-DVD--ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 755
+ + E KA + I + +GE+G LSGGQ+ R+A+ARA+ I
Sbjct: 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 756 MLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 812
+LD+ SA+D + + L A G +T I+ H + + AD++ D G +
Sbjct: 549 LLDEATSALDTESEAVVQAALDKAREG-----RTTIVIAHRLSTVRNADVIAGFDGGVIV 603
Query: 813 WIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD-- 868
G+ +L +Y T + + + ++ N + ++ +
Sbjct: 604 EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRS 663
Query: 869 ---------DAQEIIEVEQRKEGRVELTVYKNYAKFSG--WFITLVICLSAILMQASRNG 917
D + ++ + V + K + W +V AI+ +
Sbjct: 664 TRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPA 723
Query: 918 NDLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 973
+ S V + +++ + ++ I + + ++ F+F +
Sbjct: 724 FSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKR 783
Query: 974 VHNTLLTKIVNAPVLFFDQ---TPGGRILNRFSSDL----YMIDDSLPFILNILLANFVG 1026
+ + ++ V +FD T G + R ++D L I + AN
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTG-ALTTRLANDAAQVKGATGSRLAVIFQNI-ANLGT 841
Query: 1027 LLGIAVV----LSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFT 1082
+ I+++ L+ + + + ++ + K+ + + L+ + S A+
Sbjct: 842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM-----LSGQALKDKKELEGSGKIAT-- 894
Query: 1083 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY-SELTASLWLSLRLQLLAAFIISFIA 1141
E + T+ + E F + + + + R + + S + + +
Sbjct: 895 EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSF------TQAMMYFS 948
Query: 1142 TMAVI---GSR--GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1196
A G+ TF LV A+ + A V + +F + K VS +
Sbjct: 949 -YAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYA---KATVSASHI 1004
Query: 1197 LEYMD-VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQV 1253
+ ++ P+ + Q L P+ +G ++F V Y P+ P L ++ ++ G +
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPN-MLEGNVQFSGVVFNY-PTRPSIPVLQGLSLEVKKGQTL 1062
Query: 1254 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGS 1313
+VG +G GKS+++ L R G + +DG I V+ LR + +V Q P LF+ S
Sbjct: 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 1314 LRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICL 1368
+ +N+ D + +I ++ ++ + ++++ T V + G S GQ+Q I +
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1428
ARAL++ +L LDE T+ +D ++ ++Q A+ +G T I IAHR+ST+ N D I+++
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVI 1242
Query: 1429 DHGHL 1433
+G +
Sbjct: 1243 QNGKV 1247
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 2e-62
Identities = 116/529 (21%), Positives = 217/529 (41%), Gaps = 71/529 (13%)
Query: 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 998
++Y + + +++ + + + R K+ I+N + +FD G +
Sbjct: 111 AYYYTGIGAGVLIVAYI---QVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGEL 167
Query: 999 LNRFSSDLYMIDDSLPFILNILLAN---FVGLLGIAVVLSY----VQVFFLLLLVPFWFI 1051
R + D+ I++ + + + F G I + V + +L I
Sbjct: 168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 1052 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1111
++K T +E L + +++ A E L T+ AF + + ++ ++
Sbjct: 228 WAK--ILSSFTDKE---LHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEA 280
Query: 1112 QRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSR---------GNLPATFSTPGLV 1162
+R + ++ ++ + I + A G+ G + F + +
Sbjct: 281 KRLG---IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG 337
Query: 1163 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLSPDWPFQG 1221
++ A+P + +F + V + +D P + PD QG
Sbjct: 338 AFSVGQASP-------NIEAFANA---RGAAYEVFKIIDNKPSIDSFSKSGHKPD-NIQG 386
Query: 1222 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+EF+N+ Y PS L +N ++ G V +VG +G GKS+ + + RL G
Sbjct: 387 NLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
+ +DG +I VR LR VV Q P LF ++ +N+ + +D+
Sbjct: 446 MVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR--YGREDVT----------M 493
Query: 1340 EEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384
+E+E +T V E G S GQ+Q I +ARAL+++ K+L LDE
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 1385 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
T+ +D ++ +++Q A+ +G T I IAHR+STV N D I D G +
Sbjct: 554 TSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-30
Identities = 109/536 (20%), Positives = 198/536 (36%), Gaps = 71/536 (13%)
Query: 320 VLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM-TIIYQKCLYVRLAERSEFSDGEI 378
+L I +T L+ F + L+K +LR + +++ Q + + + + G +
Sbjct: 757 ILGIISFITFFLQGFTFGKAGEILTK---RLRYMVFKSMLRQDVSWF---DDPKNTTGAL 810
Query: 379 QTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL-----LYTQVKFAFVSGLAITILLIP 433
T ++ D + + ++ FQ L L + + LAI ++
Sbjct: 811 TTRLANDAA---QVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLL-LLAIVPIIAI 866
Query: 434 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKH 493
+++ K K+ + + E + + RT+ EQ F + +
Sbjct: 867 AGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET-MYAQSLQIPYR 925
Query: 494 LSTRKYLDAWCVFFWATTPTLFS---LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 550
+ +K F + FS F FG + + + V + +
Sbjct: 926 NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985
Query: 551 SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQD 610
A +S + R + E+ SY + GL + V
Sbjct: 986 QVSSFAPDYAKATVSASHIIRII---------EKTPEIDSYSTQGLKPNMLEG-NVQFSG 1035
Query: 611 ATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML------T 664
+ Y VL +SL + KG +A++G G GKS+++ +L
Sbjct: 1036 VVFN-YPTRPSIP--VLQGLSLEVKKGQTLALVGSSGCGKSTVVQ------LLERFYDPM 1086
Query: 665 HGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
GS+ G + V Q P + +I +NI +G N SY E ++A
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 712 L----DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
I + +G+KG LSGGQ+ R+A+ARA+ I +LD+ SA+D +
Sbjct: 1147 EANIHQF-IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 768 VARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + L A +T I+ H + I AD++VV+ G+VK G+ L
Sbjct: 1206 SEKVVQEALDKA-----REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 324 bits (832), Expect = e-100
Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 3/222 (1%)
Query: 1214 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1273
WP G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL
Sbjct: 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70
Query: 1274 TPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL 1333
G+I +DG++ + + R F V+PQ F+F G+ R NLDP + D +IW V
Sbjct: 71 LNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
++ ++ +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 1392 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
T I++ + TVI RI +L D+ L+++ +
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-26
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 40/297 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 672
E N +L +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 31 EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGEIQIDGVSWDSITL 89
Query: 673 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYS-----ETLKACTLDVDISLMVG 721
+ +PQ +I SGT R N+ DP ++S + L I G
Sbjct: 90 EQWRKAFGVIPQKVFIFSGTFRKNL------DPNAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+ + G LS G + + LAR+V + I +LD+ + +D + I +
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR--TLKQA 201
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL----AVSLYSGFWSTNEFDTS 837
T ILC ++A+ D +V+++ +V+ S +L A +GF + + +
Sbjct: 202 FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMN-- 259
Query: 838 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 894
+ + T ++ + + V + +++++ + + L + +
Sbjct: 260 -FLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDV-----QVGANMSLGIRPEHLL 310
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = 1e-96
Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 600 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+ V+M++ T W EE VL ++ + +G L+AV G G+GK+SLL I+G
Sbjct: 1 SLTTTEVVMENVTAFW----EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
Query: 660 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
E+ + G I SG I++ Q WI+ GTI++NI+FG +YD Y +KAC L+ DIS
Sbjct: 57 ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
D +GE G+ LSGGQRAR++LARAVY +D+Y+LD +D + I + +
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 177 -LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 22/224 (9%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+ +NVT ++ L DINF IE G + + G TGAGK+S+L + G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1336
+I GR + Q ++ G++++N+ + D+ + SV++ C
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSY---DEYRYRSVIKAC 107
Query: 1337 HVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1394
++E++ A + E GI+ S GQR I LARA+ K + + LD +D T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1395 -ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
I ++ + T I + ++ + D+ILIL G G
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 211
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = 1e-96
Identities = 96/217 (44%), Positives = 141/217 (64%), Gaps = 5/217 (2%)
Query: 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 664
++ +++AT +W LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM
Sbjct: 3 SITVRNATFTW----ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58
Query: 665 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 724
G + GS+AYVPQ WI + ++R+NILFG + Y ++AC L D+ ++ GD
Sbjct: 59 EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDR 118
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGEKGVNLSGGQ+ R++LARAVY +DIY+ DD LSAVDA V + I N I ML+
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 785 -KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
KTRIL TH++ + D+++VM G++ +GS +L
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 7e-38
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 24/225 (10%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
I +N T + S P L+ I F+I G V +VG+ G GKSS+L+AL G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1337
+ + +G A VPQ ++ SLR+N+ ++ SV++ C
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACA 105
Query: 1338 VKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS- 1394
+ ++E G T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1395 ILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
I +N I + K T I + H +S + +D I+++ G + G
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMG 210
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 302 bits (776), Expect = 2e-93
Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 24/307 (7%)
Query: 564 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 623
+ + +T F E EL + A N+ + D + S+ N
Sbjct: 5 VVMENVTAFW--EEGFGELFEKAKQ-----------NNNNRKTSNGDDSLSF-SNFSLLG 50
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 683
VL ++ + +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 684 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743
+ GTI++NI+ G +YD Y +KAC L+ DIS D +GE G+ LSGGQRAR++
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMV 803
LARAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKI 228
Query: 804 VVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDV 863
+++ +G + G+ ++L +F +S M ++ IL +
Sbjct: 229 LILHEGSSYFYGTFSELQN-------LRPDF-SSKLMGCDSFDQFSAERRNSILTETLHR 280
Query: 864 VSVSDDA 870
S+ DA
Sbjct: 281 FSLEGDA 287
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 9e-40
Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 29/257 (11%)
Query: 1190 MVSLERVLEYMDVPQEELC----GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINF 1245
V +E V + + EL + + F N ++ P L DINF
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINF 59
Query: 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1305
IE G + + G TGAGK+S+L + G+I GR + Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQ 106
Query: 1306 SPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVG 1361
+ ++ G++++N+ + D+ + SV++ C ++E++ A + E GI+ S G
Sbjct: 107 NSWIMPGTIKENIIGVSY---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163
Query: 1362 QRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVL 1420
QR I LARA+ K + + LD +D T I ++ + T I + ++ +
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223
Query: 1421 NMDEILILDHGHLPHCG 1437
D+ILIL G G
Sbjct: 224 KADKILILHEGSSYFYG 240
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 282 bits (725), Expect = 8e-83
Identities = 122/555 (21%), Positives = 246/555 (44%), Gaps = 32/555 (5%)
Query: 892 YAK-FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCM 950
F I I L IL AS L +D + + +V+ +
Sbjct: 19 TIAPFKAGLIVAGIAL--ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI 76
Query: 951 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMID 1010
+ + ++ ++ S + + + L ++ PV FFD+ G +L+R + D +
Sbjct: 77 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 136
Query: 1011 DSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYSKLQFFYRST 1062
S L ++ ++G+ +++ Y L++L P + + + ++
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 1063 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122
+ ++ + + + L G + F ++ +F + + ++AS
Sbjct: 197 QNTMGQVTTSA--------EQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1182
+QL+A+ ++F+ S ++ + + + + S ++ L + +
Sbjct: 249 SISDPIIQLIASLALAFVL---YAASFPSVMDSLTAGTITVV-FSSMIALMRPLKSLTNV 304
Query: 1183 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1242
+ ++ M + + + +D QE+ G + + G +EF+NVT Y AL +
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQEKDEGKRVIDR---ATGDLEFRNVTFTYPGREVPALRN 361
Query: 1243 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302
IN I G V +VGR+G+GKS+I + + R I G IL+DG ++ + LR + A+
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 1303 VPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1357
V Q+ LF ++ +N+ + + +I + + + + GL+T + E+G+
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSRE-QIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480
Query: 1358 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1417
S GQRQ I +ARALL+ S +L LDE T+ +D ++ +Q A+ K T + IAHR+S
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 1418 TVLNMDEILILDHGH 1432
T+ DEI++++ G
Sbjct: 541 TIEQADEIVVVEDGI 555
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 6e-34
Identities = 114/586 (19%), Positives = 221/586 (37%), Gaps = 79/586 (13%)
Query: 276 AYGYPY----ICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTS 329
P+ I G+ ++N + LL L+ F + L + + +
Sbjct: 18 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL--LWMPLVVIGLM 75
Query: 330 ILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRT 389
IL+ S+ +S + K+ ++ ++ + + +A + S G + + ++ D++
Sbjct: 76 ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSE-- 133
Query: 390 VNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 444
+A+S A + IG+ + + Y + + I ++L P+ +++
Sbjct: 134 -QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI-----ILVVLAPIVSIAIRVVSK 187
Query: 445 ATEKMMKQKDERI----RRTGEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLST 496
+ K + ++L + + ++G +++ F K R +K +S
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 497 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 556
D + + F + L A + + +L+ PL S V
Sbjct: 248 SSISDPIIQLIASLALAF--VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 305
Query: 557 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS----NFNSKDMAVIMQDAT 612
+ + L L + + E ++ + L F
Sbjct: 306 AQFQRGMAACQTLFAIL---DSEQEKDEGKRVIDRATGDLEFRNVTFT------------ 350
Query: 613 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
Y E L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 351 ---YPGREVP---ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 673 -------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDIS 717
+A V Q + + T+ +NI + + Y + E + I+
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LS 774
M G IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I L
Sbjct: 465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 775 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T ++ H + I AD +VV++ G + G+ ++L
Sbjct: 525 EL-----QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 277 bits (712), Expect = 5e-81
Identities = 114/507 (22%), Positives = 227/507 (44%), Gaps = 36/507 (7%)
Query: 942 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 1001
++L + ++ ++ S +++ L ++ PV FFDQ G +L+R
Sbjct: 69 FMILGLM-FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSR 127
Query: 1002 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYS 1053
+ D + + L ++ ++G+ ++ + L+++ P F+
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187
Query: 1054 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1113
+ + R+ + + S + + L G + ++ ++ +F + ++
Sbjct: 188 RFRKISRNMQTAMGHVTSSA--------EQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
Query: 1114 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLV---GLALSYAA 1170
+ ++A +Q++A+ + + + S ++ A +
Sbjct: 240 QTMKLVSAQSIADPVIQMIASLALFAVL---FLASVDSIRAELTPGTFTVVFSAMFGLMR 296
Query: 1171 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1230
P+ +L + S F M + + + MD+ E G G ++ ++VT
Sbjct: 297 PLKAL-TSVTSEFQRG---MAACQTLFGLMDLETERDNGKYEAER---VNGEVDVKDVTF 349
Query: 1231 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1290
Y+ AL ++F+I G V +VGR+G+GKS+I N R + G I +DG ++ +
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 1291 TPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV-- 1345
+ +LR FA+V Q+ LF ++ +N+ + +I + H E +E +
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTRE-QIEQAARQAHAMEFIENMPQ 468
Query: 1346 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1405
GL+T + E+G S S GQRQ + +ARALL+ + VL LDE T+ +D ++ +Q A+ K
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
Query: 1406 GMTVITIAHRISTVLNMDEILILDHGH 1432
TV+ IAHR+ST+ DEIL++D G
Sbjct: 529 NKTVLVIAHRLSTIEQADEILVVDEGE 555
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 107/557 (19%), Positives = 209/557 (37%), Gaps = 67/557 (12%)
Query: 297 AGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSI 354
LL L+ F S L +L + ++ S+ LS + + +
Sbjct: 43 YMISLLKPLLDEGFGNAESNFL--RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQM 100
Query: 355 MTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQ-----IGVA 409
++ +++ + + S G + + ++ D++ +A + A + IG+
Sbjct: 101 RRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE---QVAGATSRALVSIVREGASIIGLL 157
Query: 410 LYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRTGEILT 465
+ + + + + I++ PV + + ++ K+ + + ++L
Sbjct: 158 TLMFWNSWQLSL-----VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLK 212
Query: 466 HIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFG 521
+ + YG +++ F R +K +S + D + +
Sbjct: 213 GHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFA--VLFLA 270
Query: 522 LFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 581
+ +L + L+ PL + V + + + L +
Sbjct: 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLM-------- 322
Query: 582 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVA 641
+ + NG + V ++D T + Y E+ L+ VS +P+G VA
Sbjct: 323 -----DLETERDNGKYEAERVNGEVDVKDVTFT-YQGKEKP---ALSHVSFSIPQGKTVA 373
Query: 642 VIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTI 688
++G GSGKS++ N + GSI G A V Q + + TI
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 689 RDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746
+NI + Y + + + I M G IGE G +LSGGQR R+A+AR
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493
Query: 747 AVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMV 803
A+ + + +LD+ SA+D + R I L KT ++ H + I AD +
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDEL-----QKNKTVLVIAHRLSTIEQADEI 548
Query: 804 VVMDKGQVKWIGSSADL 820
+V+D+G++ G ADL
Sbjct: 549 LVVDEGEIIERGRHADL 565
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 4e-78
Identities = 110/521 (21%), Positives = 226/521 (43%), Gaps = 32/521 (6%)
Query: 927 DTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 986
T + + T + L IF + + +R + + S + + L +
Sbjct: 49 ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS 108
Query: 987 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLL 1043
F+ G++++R +D+ D + L + + + ++ ++ ++ V L
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168
Query: 1044 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1103
+ PF+ + + + R+L R S + + + E + G S +++F ED
Sbjct: 169 FIFPFYILTV---YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225
Query: 1104 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVG 1163
F + + + + + + + + +G+ + + + L
Sbjct: 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVI---GVGAYLAISGSITVGTLAA 282
Query: 1164 ---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWP 1218
P+ L ++ T++ S++RV + +D + G Q +
Sbjct: 283 FVGYLELLFGPLRRL-VASFTTLTQS---FASMDRVFQLIDEDYDIKNGVGAQPIEI--- 335
Query: 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R +
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN-----LDPFHMNDDLKIWSVL 1333
GQIL+DG NI + LR + +V Q LF ++++N D ++
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAA 451
Query: 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
Query: 1392 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH
Sbjct: 512 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH 552
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 5e-27
Identities = 103/568 (18%), Positives = 203/568 (35%), Gaps = 75/568 (13%)
Query: 294 IGFAGPLLLNKLIKFLQQGSGHLDGYV-------LAIALGLTSILKSFFDTQYSFHLSKL 346
I PLL+ I + + IAL + I++ + +
Sbjct: 29 IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWT 88
Query: 347 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQ 405
K+ I +Y + + G++ + + D ++T + + W
Sbjct: 89 SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCIT 148
Query: 406 -IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRT 460
I + + VK + + P + K+ +++ + +
Sbjct: 149 IIIALSIMFFLDVKLTL-----AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFL 203
Query: 461 GEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 516
E + I +K + E F + +KH Y A P +
Sbjct: 204 HERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPII-- 261
Query: 517 LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 576
+ G + + + + + L PL L +F S+ R+ + +
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI--- 318
Query: 577 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPK 636
+ ++++ + + + + + + Y + + +L ++L + K
Sbjct: 319 DEDYDIKNGVGAQP-----IEIKQGR---IDIDHVSFQ-Y---NDNEAPILKDINLSIEK 366
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMM----LTHGSIHASG-------------SIAYVPQ 679
G VA +G G GKS+L+N I +T G I G I V Q
Sbjct: 367 GETVAFVGMSGGGKSTLINLI----PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 680 VPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLS 735
+ S T+++NIL G+ P + E ++A + I + G +GE+GV LS
Sbjct: 423 DNILFSDTVKENILLGR---PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTH 792
GGQ+ RL++AR + I +LD+ SA+D + I L +T ++ H
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-----RTTLIVAH 534
Query: 793 NVQAISAADMVVVMDKGQVKWIGSSADL 820
+ I+ AD +VV++ G + G+ +L
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHREL 562
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 5e-66
Identities = 136/535 (25%), Positives = 230/535 (42%), Gaps = 90/535 (16%)
Query: 941 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 1000
Y+++L S L ++ S ++ L K+ PV FFD+TP G I++
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 1001 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIY 1052
R +D+ I++ L + + V L G +++ V V L +VP +
Sbjct: 139 RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198
Query: 1053 SKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQ 1112
S+ + ++ R L +L+ + E ++G + I+ F E+ M KF +
Sbjct: 199 SQTRKYFYENQRVLGQLNGI--------IEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 1113 RTSYSELTASLWLSLRLQLLAAFI---ISFI-----ATMAVIGS----RGNLPATFSTPG 1160
+ + Q+ + + ++ + A ++ G + + T G
Sbjct: 251 KVGT-----------KAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDII-----TVG 294
Query: 1161 LVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1220
+ + Y+ L + F + + S ER+ E +D+ +E+ +
Sbjct: 295 TIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELR--EVR 352
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G IEF+NV Y P L DI F I+ G +V +VG TG+GK++I+N L R + GQ
Sbjct: 353 GEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMNDDLKIWSV 1332
ILVDG++I LR +V Q LF ++++NL D
Sbjct: 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD------------- 458
Query: 1333 LEKCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSK 1377
EE++ G ET + ++G S GQRQL+ + RA L + K
Sbjct: 459 -------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK 511
Query: 1378 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
+L LDE T+NVD +T +Q A+ +G T I IAHR++T+ N D I++L G
Sbjct: 512 ILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGE 566
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 118/599 (19%), Positives = 213/599 (35%), Gaps = 130/599 (21%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 335
+ + I + + V+ +G P L+ K I L + I + L S
Sbjct: 35 HTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY-ALTSLL 93
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD---------------GEIQT 380
+ L+ IM + Q ++ RL R E + G+I +
Sbjct: 94 --FW----------LQGKIMLTLSQDVVF-RL--RKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 381 FMSVDTDRTVNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVN 435
+ D D N+ N ++ F G + + V + +T+ ++P+
Sbjct: 139 RVINDVD---NINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL-----VTLSIVPLT 190
Query: 436 KWIANLIANATEKM-MKQKDERIRRTG---EILTHIRTLKMYGWEQIFSSWLMKTRSSEV 491
I ++++ T K + + + G E ++ + +K++ E+ + E
Sbjct: 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREE---------KEMEK 241
Query: 492 KHLSTRKYLDAWC--VFFWATTP---TLFSLFTFGLFALMGHQLDAAMVFT--CLALF-- 542
F P + + F L + G L + T +A F
Sbjct: 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIG 301
Query: 543 --NSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFN 600
PLN N + A S R+ L + + E + G
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEIL---DLEEEKDDPDAVELREVRG----- 353
Query: 601 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 660
+ ++ S Y +++ VL ++ + G VA++G GSGK++++N +
Sbjct: 354 ----EIEFKNVWFS-Y----DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL--- 401
Query: 661 MM----LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQ-S 702
M + G I G SI V Q + S T+++N+ +G P +
Sbjct: 402 -MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN---PGAT 457
Query: 703 YSETLKACTL-DVD--ISLMVGG-DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
E +A L D I + G + + + G +LS GQR LA+ RA I +LD
Sbjct: 458 DEEIKEAAKLTHSDHFIKHLPEGYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516
Query: 759 DVLSAVDA------QVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 811
+ S VD Q A M M KT I+ H + I AD+++V+ G++
Sbjct: 517 EATSNVDTKTEKSIQAA--------MWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 8e-63
Identities = 113/417 (27%), Positives = 202/417 (48%), Gaps = 31/417 (7%)
Query: 1028 LGIAVVLSYVQVFFL-LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLN 1086
+ I V LS V +F + +++ F ++ K +R ++ V R E L
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLL 210
Query: 1087 GSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1146
G +RAF+ E+Y F++ +R+ ++A + L L I + +AV+
Sbjct: 211 GVRVVRAFRREEYENENFRKANESLRRSI---ISAFSLIVFALPLF--IFIVNMGMIAVL 265
Query: 1147 --GSRGNLPATFSTPGLVGLALSYAAPI---VSLLGNFLSSFTETEKEMVSLERVLEYMD 1201
G ++ +Y I + ++GN L+ + S +RVLE ++
Sbjct: 266 WFGGVLVRNNQMEIGSIMAY-TNYLMQIMFSLMMIGNILNFIV---RASASAKRVLEVLN 321
Query: 1202 VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGA 1261
+L+ +G + F+NV RY + L +NF+++ G+ V ++G TG+
Sbjct: 322 EKPAIEEADNALALP-NVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGS 380
Query: 1262 GKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--- 1318
GKS+++N + RL G++ VD L++ ++DLRG + VPQ LF G++++NL
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 1319 DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1376
DD +I + + + + ++ G ++ V+ G +FS GQ+Q + +ARAL+K
Sbjct: 441 RE-DATDD-EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498
Query: 1377 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
KVL LD+CT++VD T + + + KG T I +I T L D+IL+L G +
Sbjct: 499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKV 555
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 5e-31
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 616 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 672
Y N + VL+ V+ + GSLVAV+GE GSGKS+L+N I + G +
Sbjct: 351 YFENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
Query: 673 ----------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLK-----ACTLDVDIS 717
I+ VPQ + SGTI++N+ +G+ + + + A D I
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR---EDATDDEIVEAAKIAQIHDF-II 463
Query: 718 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
+ G + + G N SGGQ+ RL++ARA+ + +LDD S+VD + IL
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG-- 521
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ + T + T + AD ++V+ +G+V G+ +L
Sbjct: 522 LKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 9e-60
Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 11/263 (4%)
Query: 1176 LGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWPFQGLIEFQNVTMRYK 1233
+ + +E + + + E +L G L +G IEF+NV Y
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQ---KGRIEFENVHFSYA 64
Query: 1234 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1293
L D++FT+ G + +VG +GAGKS+IL LFR I G I +DG +I
Sbjct: 65 DGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1294 RDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVKEEVEAV--GLET 1349
LR VVPQ LF ++ DN+ +D ++ + + + + + A G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND-EVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 1350 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTV 1409
V E G+ S G++Q + +AR +LK+ ++ LDE T+ +D +Q +++ C T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT 242
Query: 1410 ITIAHRISTVLNMDEILILDHGH 1432
I +AHR+STV+N D+IL++ G
Sbjct: 243 IVVAHRLSTVVNADQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 4e-27
Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 40/305 (13%)
Query: 545 LISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLSNFNSKD 603
+ ++ FI + + L + + E++ + G F +
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLL---KEETEVKDLPGAGPLRFQKGRIEFENVH 60
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
+ Y + L VS + G +A++G G+GKS++L + +
Sbjct: 61 FS----------Y----ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106
Query: 664 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC 710
+ G I G I VPQ + + TI DNI +G+ E A
Sbjct: 107 SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT--AGNDEVEAAA 164
Query: 711 ---TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 767
+ I G +GE+G+ LSGG++ R+A+AR + I +LD+ SA+D
Sbjct: 165 QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 768 VARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLY 825
R I ++ + +T I+ H + + AD ++V+ G + G L +Y
Sbjct: 225 NERAIQAS--LAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVY 282
Query: 826 SGFWS 830
+ W
Sbjct: 283 ADMWQ 287
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 203 bits (520), Expect = 2e-59
Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 33/233 (14%)
Query: 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1279 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1335
GQ+L+DG ++ LR + VV Q L S+ DN+ +P M+
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSV---------- 112
Query: 1336 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380
E+V G T V E G S GQRQ I +ARAL+ + K+L
Sbjct: 113 ----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 1381 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
DE T+ +D ++ ++ + CKG TVI IAHR+STV N D I++++ G +
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 221
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGD 723
+ V Q +L+ +I DNI S + + A L IS + G
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 724 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICK 193
Query: 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T I+ H + + AD ++VM+KG++ G +L
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 3e-58
Identities = 71/216 (32%), Positives = 118/216 (54%), Gaps = 7/216 (3%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++ ++V Y L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHV 1338
+DG I N + + R + V Q + G++R+NL D+ +W VL+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDE-DLWQVLDLAFA 118
Query: 1339 KEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
+ VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1397 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
Q A+ S KG T + IAHR+ST+++ D+I ++ G
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 7e-29
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMML--------TH 665
++ +L +S S++A G G GKS++ + + GE+ + +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 666 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGG 722
+ + I +V Q I++GTIR+N+ +G D + + + L + M
Sbjct: 72 ENWRSQ--IGFVSQDSAIMAGTIRENLTYGLEGDY-TDEDLWQVLDLAFARSFVENMPDQ 128
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMG 779
+GE+GV +SGGQR RLA+ARA I MLD+ +++D++ + L +
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--- 185
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS--LYSGFWS 830
M +T ++ H + I AD + ++KGQ+ G +L + LY+ + S
Sbjct: 186 --MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 3e-52
Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 7/219 (3%)
Query: 1219 FQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1276
F IEF +V Y + + L INF I GT +VG TG+GKS+I L+R
Sbjct: 14 FGVNIEFSDVNFSYPKQTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEK 1335
G I + G N+ +R +VPQ LF +++ N+ ++ D ++ +
Sbjct: 73 -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 1336 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
+ + +EA+ +T V G+ S G+RQ I +AR LLK K++ DE T+++D++T
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
+ Q A+ K T+I IAHR+ST+ + + I++L+ G
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 619 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL------GEMM--------LT 664
++ + L ++ +P G+ A++G GSGKS++ + G++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYN 87
Query: 665 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC---TLDVDISLMVG 721
SI + I VPQ + + TI+ NIL+GK + E +KA L I +
Sbjct: 88 RNSIRSI--IGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSAQLYDFIEALPK 143
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 781
+G KG+ LSGG+R R+A+AR + I + D+ S++D++ +
Sbjct: 144 KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA--VEDL 201
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
+T I+ H + IS+A+ +++++KG++ G+ DL Y+ W+
Sbjct: 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 9e-50
Identities = 73/233 (31%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 1218 PFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1275
+GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++ L L
Sbjct: 12 NMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1276 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1335
GG++L+DG ++ L + A V Q P LF S R+N I L +
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN-----------IAYGLTR 119
Query: 1336 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380
EE+ AV G +T V E+G S GQRQ + LARAL++ ++L
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 1381 LDECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHG 1431
LD T+ +DA +Q + S E TV+ I ++S IL L G
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEG 232
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 2e-26
Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 33/219 (15%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMM--------LTHGSIHA 670
VL ++ L G + A++G GSGKS++ + G+++ H +H
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH- 92
Query: 671 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYI 727
+A V Q P + + R+NI +G P + E IS G +
Sbjct: 93 -TQVAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA------QVARWILSNAIMGPH 781
GE G LSGGQR +ALARA+ + +LD+ SA+DA Q L + P
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYES---PE 204
Query: 782 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+T +L T + A ++ + +G V G+ L
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 8e-30
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 33/223 (14%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+I+ +NV + K +L +IN + G V I+G G+GK+++L A+ L P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLLP-YSG 58
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD------LKIWS 1331
I ++G+ + R +R P + + D LK
Sbjct: 59 NIFINGMEV-----RKIRNYIRYSTNLPEAY---------EIGVTVNDIVYLYEELKGLD 104
Query: 1332 VLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ E ++A+ L E ++ S GQ L+ + AL +++ LDE NVDA
Sbjct: 105 ---RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1391 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGH 1432
++ I G I + H + + + G+
Sbjct: 162 ARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGN 202
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
+ + + L ++L + G V ++G GSGK++LL +I G ++ G+I +G
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69
Query: 673 ---SIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 724
I Y +P + + T+ D + K D + E LK +
Sbjct: 70 IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK----------ALKLGE 119
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+ K LS GQ + + A+ +I LD+ VDA R ++S I
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-RHVISRYI---KEYG 175
Query: 785 KTRILCTHNVQ-AISAADMVVVMDKG 809
K IL TH + + G
Sbjct: 176 KEGILVTHELDMLNLYKEYKAYFLVG 201
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-27
Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 28/228 (12%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ +++ R L I+F IE G G++G GAGK++ L + L G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCH 1337
V G N++ P ++R + +P+ + + L + +
Sbjct: 74 VFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI------EEM 126
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
V+ E GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A ++
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 1398 NAISSECK-GMTVITIAHRISTVLNMDE-------ILILDHGHLPHCG 1437
+ + G+T++ +H NM E I ++ +G + G
Sbjct: 187 KILKQASQEGLTILVSSH------NMLEVEFLCDRIALIHNGTIVETG 228
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 41/221 (18%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 673 SIAYVPQVP---WILSGTIRDNILF-GKNYD------PQSYSETLKACTLDVDISLMVGG 722
I+Y+P+ + G + + F Y + + L
Sbjct: 89 LISYLPEEAGAYRNMQG--IEYLRFVAGFYASSSSEIEEMVERATEIAGLG--------- 137
Query: 723 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
I ++ S G +L +ARA+ + +LD+ S +D AR + +
Sbjct: 138 --EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQ 194
Query: 783 LQKTRILCTHN---VQAISAADMVVVMDKGQVKWIGSSADL 820
T ++ +HN V+ + D + ++ G + G+ +L
Sbjct: 195 EGLTILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 35/230 (15%)
Query: 1223 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1276
IE NV+ + P AL +++ I G + + G TG+GKS++ + L + P
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEP- 59
Query: 1277 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRD-------NLDPFHMNDDL 1327
G +L DG ++R + Q P F + D N P
Sbjct: 60 TSGDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP------- 109
Query: 1328 KIWSVLEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1385
VK+ +E VGL ++F S G+++ + +A ++ +L LDE
Sbjct: 110 ---DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1386 ANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+D + + L + + G TVI I+H I TV+N D +++L+ G
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-20
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 24/233 (10%)
Query: 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663
M + + + + + + L VSL + +G + V G GSGKS+LL + G +
Sbjct: 1 MRIEVVNVSHI-FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 664 THGSIHASG----------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKAC 710
T G + G +I Q P + + D + F KN+ P + +
Sbjct: 60 TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPL- 116
Query: 711 TLDVDISL-MVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 768
V ++ VG D ++ LSGG++ R+A+A + H DI +LD+ L +D +
Sbjct: 117 ---VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 769 ARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+L + L KT IL +H++ I+ D VVV++KG+ + G+ +
Sbjct: 174 KTDLL-RIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 24/226 (10%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1278
+++ + + Y A L IN I+ G I+G G GKS++ N + + +
Sbjct: 7 ILKVEELNYNYSDGTHA-LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---S 62
Query: 1279 GQILVDGLNIINTP--VRDLRGRFAVVPQSPF--LFEGSLRDNLD----PFHMNDDLKIW 1330
G+IL D I + + LR +V Q P LF S+ D +N L
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ--DVSFGA--VNMKLPED 118
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1390
+ ++ V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D
Sbjct: 119 EIRKR--VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
Query: 1391 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
S + + + G+T+I H I V D + ++ G +
Sbjct: 177 MGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 28/221 (12%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ 679
+ L +++ + +G + A++G G GKS+L + G + + G I I Y +
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77
Query: 680 VPW----------------ILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISL-MVG 721
+ S ++ ++ FG N E K VD +L G
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKR----VDNALKRTG 132
Query: 722 GDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ ++ +K LS GQ+ R+A+A + + +LD+ + +D I+ +
Sbjct: 133 --IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 781 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
L T I+ TH++ D V VM +G+V G+ ++
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 8e-27
Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 23/232 (9%)
Query: 1222 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
LI+ + K L I++ I G + + G GAGK+++LN L P G
Sbjct: 21 LIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 1280 QILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-----NDDLKIWSV 1332
+ + G + +R V S ++ + + ++
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 1333 L---EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ + + ++ VG+ ++ S G++Q + +ARAL+ +VL LDE A +D
Sbjct: 134 IDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 1390 AQT-ASILQ--NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLPHCG 1437
S+L +++S + +I + H I + +IL+L G G
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 46/248 (18%)
Query: 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662
M + + + +L ++S + KG + G G+GK++LLN +
Sbjct: 19 HMLIQLDQIGRMK------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72
Query: 663 LTHGSIHASG---------------SIAYVPQ---VPWILSGTIRDNILFGKN-----YD 699
T G+++ G I +V + + D ++ G Y
Sbjct: 73 ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ 132
Query: 700 PQSYSETLKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 757
+A L V +S A + LS G++ R+ +ARA+ + +L
Sbjct: 133 DIDDEIRNEAHQLLKLVGMS-------AKAQQYIGYLSTGEKQRVMIARALMGQPQVLIL 185
Query: 758 DDVLSAVDAQVARWILSN----AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVK 812
D+ + +D +LS + P + I TH ++ + ++++ GQ
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTL---AMIYVTHFIEEITANFSKILLLKDGQSI 242
Query: 813 WIGSSADL 820
G+ D+
Sbjct: 243 QQGAVEDI 250
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 8e-27
Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 19/214 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+E +++++ Y L I TIE G V G G GK+++L + G+I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
+G+ I ++G+ +P+ + S+ D L L V + + +
Sbjct: 68 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLK-AVA--SLYGVKVNKN-EIMDA 118
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
+E+V + K+ G S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 119 LESVEVLDLKKKLG-ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177
Query: 1402 SECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433
K G+ +I+ +S D L
Sbjct: 178 EILKEKGIVIISSREELSYC---DVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 29/202 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 676 YVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
++P+ + ++ D + G + + L++ + D+ +G
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DLKKKLG-------- 132
Query: 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
LS G R+ LA + ++IY+LDD + A+D +L +I+ + I+
Sbjct: 133 ---ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVII 188
Query: 790 CTHNVQAISAADMVVVMDKGQV 811
+ + D+ + K
Sbjct: 189 SSREELSY--CDVNENLHKYST 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 6e-23
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 52/244 (21%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 56
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE------- 1334
G + L A + Q PF V
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTP----------PFAT-------PVWHYLTLHQH 99
Query: 1335 ----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL-------KSSKVLCLDE 1383
+ + A+ L+ + S S G+ Q + LA +L + ++L LDE
Sbjct: 100 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159
Query: 1384 CTANVD-AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLPHCG 1437
++D AQ +++ + + +G+ ++ +H LN +L G + G
Sbjct: 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHD----LNHTLRHAHRAWLLKGGKMLASG 215
Query: 1438 CAAA 1441
Sbjct: 216 RREE 219
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 47/223 (21%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +S + G ++ ++G G+GKS+LL + G GSI +G
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
AY+ Q + + ++ + ++ A +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL------------ALDDKLG 121
Query: 730 KGVN-LSGGQRARLALARA-------VYHGSDIYMLDDVLSAVD----AQVARWILSNAI 777
+ N LSGG+ R+ LA + +LD+ ++++D + + + + + +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 778 MGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 819
G ++ +H++ + A ++ G++ G +
Sbjct: 182 QG-----LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 4e-22
Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 40/227 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ +N+ Y + +NF + G + ++G+ G GKS++L+ L + G+I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI- 62
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------------HMNDDLKIW 1330
++ VPQ + + H+N
Sbjct: 63 ------------EVYQSIGFVPQFF--------SSPFAYSVLDIVLMGRSTHIN-TFAKP 101
Query: 1331 SVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ + ++ + L + + S GQRQLI +ARA+ K++ LDE T+ +D
Sbjct: 102 KSHDYQVAMQALDYLNLTHL-AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 1390 AQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
I+ + + ++ + MTV+ H+ + V+ + ++ L+L+ +
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP- 681
+N + Q++ L KG ++AV+G+ G GKS+LL+ +LG G I SI +VPQ
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFS 76
Query: 682 WILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISL----MVGGDMAYIGEKGVN-LS 735
+ ++ D +L G++ + K+ D +++ + + ++ ++ LS
Sbjct: 77 SPFAYSVLDIVLMGRS--THINTFAKPKS--HDYQVAMQALDYLN--LTHLAKREFTSLS 130
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV- 794
GGQR + +ARA+ + +LD+ SA+D +LS I T + TH
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Query: 795 QAISAADMVVVMDKGQV 811
Q ++ A+ ++++K
Sbjct: 191 QVVAIANKTLLLNKQNF 207
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-19
Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 26/236 (11%)
Query: 1218 PFQGL-------IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1270
PF + +VT RY + + T G +G+VG G GKS+ L L
Sbjct: 66 PFDAIQIINLPTNLEAHVTHRYSAN--SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKIL 123
Query: 1271 FRLTPICGGQILV-----------DGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNL 1318
G+ G + N + L + + ++
Sbjct: 124 AGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183
Query: 1319 DPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377
L++ E VK ++ + LE +K S G+ Q + + ++ +
Sbjct: 184 VQKVGELLKLRMEKSPED--VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD 241
Query: 1378 VLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHG 1431
V DE ++ +D + I S VI + H +S + + D + I+
Sbjct: 242 VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-18
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW- 682
+ VLN ++ ++GE G+GK++L+ + G + G +++ PQ
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 683 --------ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 733
+ IR L +PQ ++ +K +D ++ ++ V +
Sbjct: 425 KFPGTVRQLFFKKIRGQFL-----NPQFQTDVVKPLRID---DII---------DQEVQH 467
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 792
LSGG+ R+A+ A+ +DIY++D+ + +D++ R I S I + +KT + H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-RIICSKVIRRFILHNKKTAFIVEH 526
Query: 793 NVQAISA-ADMVVVMDKGQVK 812
+ + AD V+V + K
Sbjct: 527 DFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-17
Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 29/201 (14%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
L+ + ++G G GK++++ L GQ + V
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQ 420
Query: 1299 RFAVVPQSPF--LFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1356
+ A LF +R D+ V+ + ++ + +
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV--------------VKPLRIDDIIDQEVQ 466
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1412
S G+ Q + + AL + + +DE +A +D + +++ I T +
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIV 524
Query: 1413 AHRISTVLNM-DEILILDHGH 1432
H + D++++ +
Sbjct: 525 EHDFIMATYLADKVIVFEGIP 545
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-10
Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 58/230 (25%)
Query: 622 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------- 673
N G ++ ++G G GKS+ L + G+ G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 674 ----------------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 711
YV +P + G ++ + + E +K
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ-KVGELLKLRMEKSPEDVKRYI 206
Query: 712 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQ 767
+ + ++ I + LSGG+ R A+ + +D+YM D+ S +D
Sbjct: 207 KILQLENVLK---RDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 768 VARWILSNAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVMDKGQV 811
A+ I S L K I H+ + + +D V ++
Sbjct: 260 AAQIIRS--------LLAPTKYVICVEHDLSVLDYL--SDFVCIIYGVPS 299
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-19
Identities = 38/217 (17%), Positives = 75/217 (34%), Gaps = 19/217 (8%)
Query: 1227 NVTMRYKPSLPAALHDINF-TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
V RYK + T + T +G++G+ G GK+++L L G +
Sbjct: 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NS 58
Query: 1286 LNIINTPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------- 1337
+ ++ RG + + L+ ++ K
Sbjct: 59 KVGKDEVLKRFRGKEIYNYFKELY--SNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 1338 --VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
E E + + + S G Q + +A +LL+ + V D+ ++ +D +
Sbjct: 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1431
+ AI K VI + H + + + D I I+
Sbjct: 177 MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 3e-18
Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 27/198 (13%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
L N + G +GI+G G GK++ L G + + +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL---------- 332
Query: 1299 RFAVVPQSPFL-FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKESGI 1356
+ PQ F ++G+++ L ++ ++ EEV + + L ++ +
Sbjct: 333 --SYKPQRIFPNYDGTVQQYL------ENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1412
S G+ Q + +A L K + + LD+ ++ +D A ++ + I
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFII 442
Query: 1413 AHRISTVLNM-DEILILD 1429
H +S + D I++
Sbjct: 443 DHDLSIHDYIADRIIVFK 460
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-15
Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 29/205 (14%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 681
+ L + +G ++ ++G G GK++ ++GE+ GS+ ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 682 WI-----LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLS 735
+ + + + + + E K L L+ E V +LS
Sbjct: 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH---RLL---------ESNVNDLS 387
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILCT 791
GG+ +L +A + +D+Y+LD S +D VA+ I + +
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT----RERKAVTFIID 443
Query: 792 HNVQAISA-ADMVVVMDKGQVKWIG 815
H++ AD ++V KG+ + G
Sbjct: 444 HDLSIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 39/213 (18%)
Query: 627 LNQVSLCLPK-GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----------HASGS- 673
L PK +++ V+G+ G GK+++L + GE++ G G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 674 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGG-----DM 724
I + + I+ K + S+ LK + +D +M
Sbjct: 74 IYNYFKEL----YSNELKIVH-KIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM 128
Query: 725 AYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783
+ K LSGG RL +A ++ +D+Y+ D S +D + + AI L
Sbjct: 129 TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAI---REL 184
Query: 784 QKTR--ILCTHN---VQAISAADMVVVMDKGQV 811
K + I+ H+ + + D++ ++
Sbjct: 185 LKNKYVIVVDHDLIVLDYL--TDLIHIIYGESS 215
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-18
Identities = 61/250 (24%), Positives = 111/250 (44%), Gaps = 31/250 (12%)
Query: 1203 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTG 1260
+ S D + +I+ N+T + AL++++ + G G++G +G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64
Query: 1261 AGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG---RFAVVPQSPFLFEG-SLRD 1316
AGKS+++ + L G +LVDG + +L + ++ Q L ++
Sbjct: 65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124
Query: 1317 NLD-PFHMNDDLKIWSVLE---KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLIC 1367
N+ P L++ + + K V E + VGL SG GQ+Q +
Sbjct: 125 NVALP------LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG-----GQKQRVA 173
Query: 1368 LARALLKSSKVLCLDECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-D 1423
+ARAL + KVL D+ T+ +D T SIL+ I+ G+T++ I H + V + D
Sbjct: 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICD 232
Query: 1424 EILILDHGHL 1433
+ ++ +G L
Sbjct: 233 CVAVISNGEL 242
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 54/230 (23%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 673 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 720
I + Q +LS T+ N+ K+ + +E L +V
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS----------LV 151
Query: 721 GGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 774
G +G+K NLSGGQ+ R+A+ARA+ + + D SA+D R IL
Sbjct: 152 G-----LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 775 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820
N +G T +L TH + + D V V+ G++ + +++
Sbjct: 207 KDINRRLG-----LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 33/233 (14%)
Query: 1222 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1278
++ +N+ + K AL ++ ++ G I+G G+GKS+++N +
Sbjct: 7 ILRTENIVKYFGEFK-----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 61
Query: 1279 GQILVDGLNIINTPVRDL--RG--R-FAVVPQSPFLFEG-SLRDN-LDPFHMNDDLKIWS 1331
G++ + +I N +L G R F Q+P + ++ +N L + + S
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTF----QTPQPLKEMTVLENLLIGEICPGESPLNS 117
Query: 1332 VLEKCHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1381
+ K + +E E + L S GQ +L+ + RAL+ + K++ +
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177
Query: 1382 DECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHG 1431
DE A V A + N + KG+T + I HR+ VLN D + ++ +G
Sbjct: 178 DEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNG 229
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 52/223 (23%)
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------- 678
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++ I
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 679 ------QVPWILSG-TIRDNILFGKNYDPQSYSETL--------------KACTL--DVD 715
Q P L T+ +N+L G+ +S +L KA + +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
+S K LSGGQ + + RA+ + ++D+ ++ V L++
Sbjct: 143 LS-------HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG-----LAH 190
Query: 776 AIMGPHMLQKTR------ILCTHNVQAISA-ADMVVVMDKGQV 811
I + + + + ++ H + + D + VM GQ+
Sbjct: 191 DIF--NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 5e-18
Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 26/218 (11%)
Query: 1226 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----G 1279
++ RY + A + ++ G VGIVG G GK++ + L +L P
Sbjct: 95 EDCVHRYGVN--AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1280 QILVDGLNI--INTPVRDLR-GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSV 1332
++ + L+ G V + ++ +L P + + LK
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDE 205
Query: 1333 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
+ K +E V+ + LE + S G+ Q + +A ALL+ + DE ++ +D +
Sbjct: 206 VGK--FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 1393 ASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILIL 1428
+ I +G V+ + H ++ + + D I ++
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
L+E+ + Y L I G +GIVG G GK++ + L + G++
Sbjct: 357 LVEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHV 1338
D V + ++ + +L S L
Sbjct: 414 EWDL---------------TVAYKPQYI-------KAEYEGTVYELLSKIDSSKLNSNFY 451
Query: 1339 KEEV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1393
K E+ + +G+ + S G+ Q + +A LL+ + + LDE +A +D +
Sbjct: 452 KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 1394 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILD 1429
+++ + T + + H + + + D +++ +
Sbjct: 512 RAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFE 546
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 679
+ L + KG ++ ++G G GK++ + + G T G + ++AY PQ
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734
V +LS + +E LK + V +L
Sbjct: 429 EYEGTVYELLSKIDSSKLN-----SNFYKTELLKPLGIIDLYDRNVE-----------DL 472
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILC 790
SGG+ R+A+A + +DIY+LD+ + +D V+R I +KT ++
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVV 528
Query: 791 THNVQAISA-ADMVVVMDKGQVKWIG 815
H+V I +D ++V + G+ G
Sbjct: 529 EHDVLMIDYVSDRLIVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 41/164 (25%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS----------- 671
N + + G +V ++G G+GK++ + + G+++ + S
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 672 -----------GSIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
G I V + +P + G +R+ L K + + E +K ++
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVK----EL 216
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 758
++ ++ + + LSGG+ R+A+A A+ + Y D
Sbjct: 217 ELENVLD---RELHQ----LSGGELQRVAIAAALLRKAHFYFFD 253
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 6e-18
Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 26/217 (11%)
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----GQ 1280
+ RY + L+ + ++ G VGIVG G GKS+ + L +L P
Sbjct: 26 DCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1281 ILVDGLNIINTPVRDLR---GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSVL 1333
++ + G V + ++ +L P + + LK
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV-------DLIPKAVKGKVIELLKKADET 136
Query: 1334 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1393
K ++E V+A+ LE ++ S G+ Q + +A ALL+++ DE ++ +D +
Sbjct: 137 GK--LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194
Query: 1394 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILIL 1428
AI +G +V+ + H ++ + + D I ++
Sbjct: 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 7e-17
Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 33/200 (16%)
Query: 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298
L I+ G +GIVG G GK++ + L + G+I D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------- 347
Query: 1299 RFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHVKEEV-EAVGLETFVKES 1354
V + ++ D +L S L K E+ + +G+
Sbjct: 348 --TVAYKPQYIK-------ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE 398
Query: 1355 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1410
S G+ Q + +A LL+ + + LDE +A +D + +++ + T +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTAL 456
Query: 1411 TIAHRISTVLNM-DEILILD 1429
+ H + + + D +++ +
Sbjct: 457 VVEHDVLMIDYVSDRLMVFE 476
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-15
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 679
+ L + KG ++ ++G G GK++ + + G T G I ++AY PQ
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358
Query: 680 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 733
V +LS + +E LK + L ++ V
Sbjct: 359 DYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGII---DLY---------DREVNE 401
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRIL 789
LSGG+ R+A+A + +DIY+LD+ + +D V+R + + + +KT ++
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEK---NEKTALV 457
Query: 790 CTHNVQAISA-ADMVVVMDKGQVK 812
H+V I +D ++V + K
Sbjct: 458 VEHDVLMIDYVSDRLMVFEGEPGK 481
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 53/218 (24%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
N + + +G +V ++G G+GKS+ + + G+++ + S
Sbjct: 33 VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN 92
Query: 673 ------------SIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 714
I V + +P + G + + + K + E +K +
Sbjct: 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVK----AL 146
Query: 715 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 774
++ ++ I LSGG+ R+A+A A+ + Y D+ S +D +
Sbjct: 147 ELENVLE---REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA- 198
Query: 775 NAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVM 806
AI L K+ ++ H+ + + +D++ V+
Sbjct: 199 RAI---RRLSEEGKSVLVVEHDLAVLDYL--SDIIHVV 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.4 bits (197), Expect = 2e-16
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1282 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
+ +G +I N P + A+VP+ +F ++ +NL + ++ +K +K
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL-------MMGAYNRKDKEGIK 116
Query: 1340 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDE 1383
++E + F +KE SG G++Q++ + RAL+ K+L +DE
Sbjct: 117 RDLEWI-FSLFPRLKERLKQLGGTLSG-----GEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 51/227 (22%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 673
+ + L +P+G +V +IG G+GK++ L++I G + G I +G
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 674 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY---- 726
IA VP+ I T+ +N++ G +Y+ K + D+ + +
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMG------AYNRKDKE-GIKRDL------EWIFSLFP 127
Query: 727 -----IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAI 777
+ + G LSGG++ LA+ RA+ + M+D+ L+ + ++V I
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 778 MGPHML---QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 821
G +L Q A+ A V++ GQ+ G +++L
Sbjct: 188 EGTTILLVEQNAL-------GALKVAHYGYVLETGQIVLEGKASELL 227
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-16
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 57/231 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
VLN +SL L G ++ +IG G GK++LL + G G I SG
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 673 ---SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG- 721
+ Y+ Q G T+ NI +G ++ + ++ L + G
Sbjct: 78 RERRLGYLVQ-----EGVLFPHLTVYRNIAYGLGNGKGRTAQERQR----IEAMLELTGI 128
Query: 722 GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSN 775
++A Y E LSGGQ+ R ALARA+ ++ +LD+ SA+D Q+ +++
Sbjct: 129 SELAGRYPHE----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA- 183
Query: 776 AIMGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
+ + + +H+ + A+ AD + VM +G++ S +L
Sbjct: 184 -------ALRANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 5e-11
Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 74/250 (29%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+ +++ ++ + L+DI+ +++ G + I+G +G GK+++L L G+I
Sbjct: 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1282 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1334
+ G I + +L R + Q LF P H+ +V
Sbjct: 62 SLSG-KTIFSKNTNLPVRERRLGYLVQEGVLF---------P-HL-------TVYRNIAY 103
Query: 1335 ------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSK 1377
+ ++ +E G+ SG GQ+Q LARAL +
Sbjct: 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSG-----GQQQRAALARALAPDPE 158
Query: 1378 VLCLDECTANVDAQ--------TASILQNAISSECKGMTVITIAH------RISTVLNMD 1423
++ LDE + +D Q + L+ G + + ++H + + D
Sbjct: 159 LILLDEPFSALDEQLRRQIREDMIAALRAN------GKSAVFVSHDREEALQYA-----D 207
Query: 1424 EILILDHGHL 1433
I ++ G +
Sbjct: 208 RIAVMKQGRI 217
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-15
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 53/229 (23%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--- 678
+ VS + +G +V ++G GSGK+++L I G T G + G + +P
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86
Query: 679 -QVPWILSG------------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GD 723
V G T+ DN+ FG E V L +
Sbjct: 87 RNV-----GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR----VRELLRFMRLES 137
Query: 724 MA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSNAI 777
A + E LSGGQ+ R+ALARA+ + + D+ +A+D Q+ ++
Sbjct: 138 YANRFPHE----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ--- 190
Query: 778 MGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 820
+ T + TH+ Q A+ AD V+V+ +G V+ G+ ++
Sbjct: 191 -----VHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-14
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 36/185 (19%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
IEF V Y + + ++F I G VG++G +G+GK++IL + L G +
Sbjct: 15 IEFVGVEKIYPGGARS-VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-------- 1334
+ G + + P + R +V Q+ LF HM V +
Sbjct: 74 IGGKRVTDLPPQK-RN-VGLVFQNYALF---------Q-HMT-------VYDNVSFGLRE 114
Query: 1335 --------KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
V+E + + LE++ S GQ+Q + LARAL +VL DE A
Sbjct: 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174
Query: 1387 NVDAQ 1391
+D Q
Sbjct: 175 AIDTQ 179
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 4e-13
Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1282 LVDGLNIINTPV--RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1333
L+DG ++ + D+ A V Q+ LF P HMN + +++ +
Sbjct: 58 LLDGKDVTDLSPEKHDI----AFVYQNYSLF---------P-HMNVKKNLEFGMRMKKIK 103
Query: 1334 EKCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ V + + +E + SG G++Q + LARAL+ + K+L LDE + +
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSG-----GEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 1389 DAQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHL 1433
D +T + +TV+ I H + M D I ++ G L
Sbjct: 159 DPRTQENARE----MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 8e-12
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 50/225 (22%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPW 682
N L+ +SL + G ++G G+GK+ L I G + G I G + + P
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--PE 70
Query: 683 ---ILSG------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVG-G 722
I ++ N+ FG K DP+ +T + +
Sbjct: 71 KHDI--AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR----------DLKIE 118
Query: 723 DMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 780
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + +
Sbjct: 119 HLLDRNPLT----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRT-QENAREMLS-- 171
Query: 781 HMLQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+L K T + TH+ +A AD + V+ G++ +G ++
Sbjct: 172 -VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 41/210 (19%)
Query: 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------IAYVPQ---- 679
++G G+GKS L I G + G + +G+ I +VPQ
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL 81
Query: 680 VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVG-GDMA--YIGEKGVNLS 735
P + ++ NI +G +N + ++ + +G + LS
Sbjct: 82 FPHL---SVYRNIAYGLRNVERVERDRRVRE-MAE-----KLGIAHLLDRKPAR----LS 128
Query: 736 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCT 791
GG+R R+ALARA+ + +LD+ LSAVD + + +L + +Q+ + T
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKT-KGVLMEELR---FVQREFDVPILHVT 184
Query: 792 HN-VQAISAADMVVVMDKGQVKWIGSSADL 820
H+ ++A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 29/222 (13%)
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQ-VGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285
R +N E G ++G TGAGKS L + + G++ ++G
Sbjct: 6 RAEKRLGN------FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59
Query: 1286 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-KCHV 1338
+I P RG VPQ LF P H++ + L+ +E V
Sbjct: 60 ADITPLPPER-RG-IGFVPQDYALF---------P-HLSVYRNIAYGLRNVERVERDRRV 107
Query: 1339 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1398
+E E +G+ + S G+RQ + LARAL+ ++L LDE + VD +T +L
Sbjct: 108 REMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167
Query: 1399 AISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ + + ++ + H + + DE+ ++ +G + G
Sbjct: 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-11
Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 21/291 (7%)
Query: 505 VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 564
+ S + L+ + A + ++ + L A+
Sbjct: 333 AIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADL---IDERIIDQQAWF 389
Query: 565 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQN 624
+ + E K + + N N D +D + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
++ L L + + G G GKS+L+ +I + YV
Sbjct: 450 LLNK-TQLRLKRARRYGICGPNGCGKSTLMRAIANGQ-VDGFPTQEECRTVYVEHDIDGT 507
Query: 685 SG--TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 742
++ D + ++ + L G I LSGG + +L
Sbjct: 508 HSDTSVLDFVFESGVGTKEAIKDKLIE----------FGFTDEMIAMPISALSGGWKMKL 557
Query: 743 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793
ALARAV +DI +LD+ + +D W L N + T I +H+
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAW-LVNYLNT---CGITSITISHD 604
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-09
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 47/207 (22%)
Query: 1240 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299
L+ ++ + GI G G GKS+++ A I GQ VDG R
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRA------IANGQ--VDGFPTQE------ECR 496
Query: 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH---------VKEEVEAVGL--E 1348
V SVL+ +K+++ G E
Sbjct: 497 TVYVEHDIDGTHSDT----------------SVLDFVFESGVGTKEAIKDKLIEFGFTDE 540
Query: 1349 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1408
+ S G + + LARA+L+++ +L LDE T ++D + L N +++ C T
Sbjct: 541 MIAMPIS-ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGI-T 597
Query: 1409 VITIAHRISTVLN--MDEILILDHGHL 1433
ITI+H S L+ + I+ + L
Sbjct: 598 SITISH-DSVFLDNVCEYIINYEGLKL 623
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1177 GNFLSSFTETEKEMVSLERV----LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY 1232
GN + F + + E + LE+ L G ++ + +++ N+ +Y
Sbjct: 628 GN-FTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ-----KAIVKVTNMEFQY 681
Query: 1233 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+ + DINF +++ ++G GAGKS+++N L G++
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
+ ++ S +AVIG G+GKS+L+N + GE++ T G + H + IAY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQ+ +L LA + + +LD+ + +D LS A+ + I+ TH
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA-LSKALKE---FEGGVIIITH 956
Query: 793 NVQAISA-ADMVVVMDKGQVK 812
+ + + V + G++
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 1357 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR- 1415
S GQ+ + LA + ++ LDE T +D + L A+ +G VI I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EG-GVIIITHSA 958
Query: 1416 --ISTVLNMDEILILDHGHL 1433
+ +E+ + G +
Sbjct: 959 EFTKNL--TEEVWAVKDGRM 976
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 26/182 (14%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1283 VDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV 1332
D + + + R +V Q+ L+ P ++ ++ L +
Sbjct: 64 FDDRLVASNGKLIVPPEDRK-IGMVFQTWALY---------P-NLTAFENIAFPLTNMKM 112
Query: 1333 ----LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
+ K V+E + + + + S Q+Q + LARAL+K +L LDE +N+
Sbjct: 113 SKEEIRK-RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1389 DA 1390
DA
Sbjct: 172 DA 173
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 604 MA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662
M +I+++ + + V L+ V++ + G ++G G+GK++ + I G +
Sbjct: 1 MVRIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56
Query: 663 LTHGSIHASGS----------------IAYV-------PQVPWILSGTIRDNILFG---K 696
+ G ++ I V P + T +NI F
Sbjct: 57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL------TAFENIAFPLTNM 110
Query: 697 NYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 754
+ + ++ A LD+ + LSG Q+ R+ALARA+ +
Sbjct: 111 KMSKEEIRKRVEEVAKILDIH---------HVLNHFPRELSGAQQQRVALARALVKDPSL 161
Query: 755 YMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHN-VQAISAADMVVVMDKGQVK 812
+LD+ S +DA++ R + L T ++ +H+ + AD V V+ KG++
Sbjct: 162 LLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220
Query: 813 WIGSSADL 820
+G DL
Sbjct: 221 QVGKPEDL 228
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 9e-11
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 38/187 (20%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+I+ + + L IN I G V ++G +G+GKS+ L L L G+I
Sbjct: 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1282 LVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC--- 1336
++DG+N+ T + +R +V Q F NL P HM +VL
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQR-F--------NLFP-HM-------TVLNNITLA 124
Query: 1337 --HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1382
V +E+ EA VGL+ S S GQ Q + +ARAL K++ D
Sbjct: 125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184
Query: 1383 ECTANVD 1389
E T+ +D
Sbjct: 185 EPTSALD 191
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 62/225 (27%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQ 1280
++ +N+ + L I+ +++ G V I+G +G+GKS++L L L P G+
Sbjct: 4 ILRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGK 60
Query: 1281 ILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1334
+ ++G + T ++L + V Q ++ +L + LE
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQF--------------HYLIPEL---TALENV 103
Query: 1335 --------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKS 1375
K + + +GL + SG G++Q + +ARAL
Sbjct: 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSG-----GEQQRVAIARALANE 158
Query: 1376 SKVLCLDECTANVDAQTA----SILQ--NAISSECKGMTVITIAH 1414
+L DE T N+D+ I N G +++ + H
Sbjct: 159 PILLFADEPTGNLDSANTKRVMDIFLKINE-----GGTSIVMVTH 198
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
+L +SL + KG V++IG GSGKS+LL ILG
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILG 51
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 33/215 (15%)
Query: 1222 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG 1278
+++ +NVT YK + AL ++N I+ G V I+G +G+GKS++LN + L P
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TE 59
Query: 1279 GQILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKI 1329
G++ +D + + +L R + V Q P L + +N++ P +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAM 116
Query: 1330 WSVLEKCHVKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDE 1383
+ E ++ LE SG GQ+Q + +ARAL + ++ D+
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSG-----GQQQRVAIARALANNPPIILADQ 171
Query: 1384 CTANVDAQTA----SILQNAISSECKGMTVITIAH 1414
T +D++T +L+ ++ E G TV+ + H
Sbjct: 172 PTWALDSKTGEKIMQLLKK-LNEE-DGKTVVVVTH 204
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 621 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
EE L V+L + +G V+++G GSGKS++LN I+G
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIG 52
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-09
Identities = 87/581 (14%), Positives = 174/581 (29%), Gaps = 144/581 (24%)
Query: 572 FLGCSEYKHELEQ-AANSPSYIS--NGLSNFNS--KDMAVIMQDATCSWYCNNEEEQNVV 626
FL S K E Q + + YI + L N N V + + +
Sbjct: 93 FL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV------------SRLQPYLK 139
Query: 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 686
L Q L L V + G +GSGK+ + + L++ ++ W+
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDF-----KIFWL--- 187
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746
N P++ E L+ +D + D + + ++ S R L
Sbjct: 188 ----N--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKS 240
Query: 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAI-MGPHMLQKTR------ILCTHNVQAISA 799
Y + +L +V +A NA + +L TR L IS
Sbjct: 241 KPYENCLL-VLLNVQNA-------KAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 800 ADMVVVMDKGQV-----KWIGSSAD-----------LAVSLYSGFWS--TNEFDTSLHMQ 841
+ + +V K++ +S+ + +D H+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 842 KQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFIT 901
++ T ++ S + E E + + L+V+ A I
Sbjct: 352 CDKLTT---------------IIESSLNVLEPAEYRKMFD---RLSVFPPSAH-----IP 388
Query: 902 L-VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRA 960
++ L +W S +V L +
Sbjct: 389 TILLSL-------------IW----------FDVIKSDVMVVVNKLH----KYSLVEKQP 421
Query: 961 FSFAFGSLRAAVKVHN---TLLTKIVNAPVLFFDQTPGGRILNRFS-SDLYMIDDSLPFI 1016
+ + L K+ N L I++ ++ + DD +P
Sbjct: 422 KESTIS-------IPSIYLELKVKLENEYALH------RSIVDHYNIPKTFDSDDLIPPY 468
Query: 1017 LNILLANFVG--LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSR 1074
L+ + +G L I F ++ + F F+ K++ + + L+++ +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 1075 SPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTS 1115
Y + N R + F+ K +E+++ + T
Sbjct: 527 LKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 4e-07
Identities = 68/399 (17%), Positives = 134/399 (33%), Gaps = 118/399 (29%)
Query: 201 NTDSGNNQ-SYWDLM-----AF-KSID----SVMNRGVIKQLDFEDLLGLPTDMDPS--- 246
+ ++G +Q Y D++ AF + D M + ++ + + + ++ + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 247 --TCHSK-------------------LLSCWQAQRSCNCTNPSLVRAICCAYGYPYI-CL 284
T SK L+S + + PS++ + YI
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPSMMTRM-------YIEQR 116
Query: 285 GLLKVVNDSIGFAG-----PLLLNKLIKFLQQ-------------GSGHLDGYVLAIALG 326
++ ND+ FA KL + L + GSG +A+ +
Sbjct: 117 D--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVC 171
Query: 327 LTSILKSFFDTQYSFHLSKLKLKLRSSIMTII-YQKCLYVRL----AERSEFSDGEIQTF 381
L+ ++ D F + L LK +S T++ + L ++ RS+ S
Sbjct: 172 LSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 382 MSVDTDRTVNLANSFH--------DAWSL----PFQIGVALYLLYTQVK--FAFVSGLAI 427
S+ + L + + + + F + + LL T+ K F+S
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATT 286
Query: 428 TILLIPVNKWIANLIANATE----KMMKQKDERIRRTGEIL-THIRTLKMYG-------- 474
T I ++ L + + K + + + + R E+L T+ R L +
Sbjct: 287 TH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLA 342
Query: 475 ----WEQIFSSWLMKTRSSEVKHLST---RKYLDAWCVF 506
W+ + L S + L RK D VF
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 4e-04
Identities = 88/552 (15%), Positives = 154/552 (27%), Gaps = 178/552 (32%)
Query: 749 YHGSDI--YMLDDVLSAVDAQ----VARWILSNA-----IMGPHMLQKTR----ILCTHN 793
Y DI D + D + + + ILS IM + T L +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSAN 853
+ + V + + K++ S T + S+ + + + +
Sbjct: 76 EEMV--QKFVEEVLRINYKFLMSP-----------IKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 854 KQILLQEKDVVSVSDDAQEIIEV--EQRKEGRVELTVY--KNYAKFSGWFITLVICLSAI 909
Q+ K VS ++ + E R V + K ++ L +CLS
Sbjct: 123 NQVF--AKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGK---TWVALDVCLSYK 175
Query: 910 LMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 969
+ Q + WL+ +
Sbjct: 176 V-QCKMDFKIFWLN-----------------------------------------LKNCN 193
Query: 970 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLG 1029
+ T+L + L + P + SS++ + S+ L LL +
Sbjct: 194 SP----ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS------ 240
Query: 1030 IAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSS 1089
Y LLV L +V + + +F N S
Sbjct: 241 ----KPYENC----LLV----------------------LLNVQNAKAWNAF----NLSC 266
Query: 1090 TI----RAFKSEDYFMAKFKEHVVL--YQRTSYSELTASL---WLSLRLQLLAA------ 1134
I R + D+ A H+ L + T + SL +L R Q L
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1135 -FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETE-KEM-V 1191
+S IA G AT+ + +++ + L+ E ++M
Sbjct: 327 PRRLSIIAESIRDG-----LATWDN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 1192 SL----------ERVLE-------YMDVPQ--EELCGYQSLSPDWPFQGLIEFQNVTMRY 1232
L +L DV +L Y SL P + I ++ +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLEL 435
Query: 1233 KPSLP--AALHD 1242
K L ALH
Sbjct: 436 KVKLENEYALHR 447
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1282 LVDGLNIINTP-------------VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1328
+V+G NI +R LR R +V Q F NL HM
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-F--------NLWS-HM----- 108
Query: 1329 IWSVLEKC-----HV----KEEVEA--------VGLETFVKE------SGISFSVGQRQL 1365
+VLE V K + VG++ + SG GQ+Q
Sbjct: 109 --TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG-----GQQQR 161
Query: 1366 ICLARALLKSSKVLCLDECT 1385
+ +ARAL VL DE T
Sbjct: 162 VSIARALAMEPDVLLFDEPT 181
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 31/182 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I+ +N+ ++ + A L++IN I+ G + ++G +G+GKS++L + + G+I
Sbjct: 4 IKLENIVKKF-GNFTA-LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
D ++ P +D R +V Q+ P + ++ N + L++ + +
Sbjct: 62 FDEKDVTELPPKD-RN-VGLVFQNWALYPHM---TVYKN-----IAFPLEL-RKAPREEI 110
Query: 1339 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
++V V ++ + SG GQ+Q + +ARAL+K +VL LDE +N+D
Sbjct: 111 DKKVREVAKMLHIDKLLNRYPWQLSG-----GQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 1390 AQ 1391
A
Sbjct: 166 AL 167
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 55/228 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
LN ++L + G +A++G GSGKS+LL +I G T G I+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76
Query: 674 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
+ V P + T+ NI F + + + ++ A L +D
Sbjct: 77 VGLVFQNWALYPHM------TVYKNIAFPLELRKAPREEIDKKVREVAKMLHID------ 124
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ LSGGQ+ R+A+ARA+ ++ +LD+ LS +DA ++ R L
Sbjct: 125 ---KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR--L 179
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ +A++ AD + V+ +G++ +G+ ++
Sbjct: 180 Q------KELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 31/181 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ +N+T R+ + A ++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 12 VKLENLTKRF-GNFTA-VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
++ P +D R ++V QS P + ++ +N + LKI K +
Sbjct: 70 FGDRDVTYLPPKD-RN-ISMVFQSYAVWPHM---TVYEN-----IAFPLKI-KKFPKDEI 118
Query: 1339 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ V +E + + SG GQRQ + +ARA++ VL +DE +N+D
Sbjct: 119 DKRVRWAAELLQIEELLNRYPAQLSG-----GQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 1390 A 1390
A
Sbjct: 174 A 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 62/257 (24%)
Query: 597 SNFNSKDMA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN 655
+N M V +++ T + +N+++L + G + ++G G GK++ L
Sbjct: 2 NNIEVIKMVEVKLENLTKRF------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR 55
Query: 656 SILGEMMLTHGSIHASGS-----------IAYV-------PQVPWILSGTIRDNILFG-- 695
I G T G I+ I+ V P + T+ +NI F
Sbjct: 56 MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM------TVYENIAFPLK 109
Query: 696 -KNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 752
K + + ++ A L ++ + LSGGQR R+A+ARA+
Sbjct: 110 IKKFPKDEIDKRVRWAAELLQIE---------ELLNRYPAQLSGGQRQRVAVARAIVVEP 160
Query: 753 DIYMLDDVLSAVDA--------QVARWILSNAIMGPHMLQKTRILCTHN-VQAISAADMV 803
D+ ++D+ LS +DA ++ + L L+ T I TH+ V+A++ D +
Sbjct: 161 DVLLMDEPLSNLDAKLRVAMRAEIKK--LQ------QKLKVTTIYVTHDQVEAMTMGDRI 212
Query: 804 VVMDKGQVKWIGSSADL 820
VM++GQ+ IGS ++
Sbjct: 213 AVMNRGQLLQIGSPTEV 229
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 45/191 (23%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ +V + + A + +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 4 VRLVDVWKVF-GEVTA-VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD------N--LDPFHMN--DD----LK 1328
+ V D V P+ RD + L P HM D+ LK
Sbjct: 62 IGD-----KLVADPEKGIFVPPKD--------RDIAMVFQSYALYP-HMTVYDNIAFPLK 107
Query: 1329 IWSVLEKCHVKEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVL 1379
+ + + + + V V GL + +E SG GQRQ + L RA+++ +V
Sbjct: 108 L-RKVPRQEIDQRVREVAELLGLTELLNRKPRELSG-----GQRQRVALGRAIVRKPQVF 161
Query: 1380 CLDECTANVDA 1390
+DE +N+DA
Sbjct: 162 LMDEPLSNLDA 172
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 9e-06
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 49/228 (21%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684
+ ++SL + G + ++G G GK++ L I G + G I+ + P+ +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 685 SG------------------TIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
T+ DNI F + Q + ++ A L +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT------ 130
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ K LSGGQR R+AL RA+ ++++D+ LS +DA ++ + L
Sbjct: 131 ---ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK--L 185
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T I TH+ V+A++ D + VM++G ++ +GS ++
Sbjct: 186 Q------RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I N+ + A+ ++F ++ G V ++G +G GK++ L L + G+I
Sbjct: 4 IRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
D + + + P + R +V Q+ P + ++ +N + L+ + K V
Sbjct: 62 FDDVLVNDIPPKY-RE-VGMVFQNYALYPHM---TVFEN-----IAFPLRA-RRISKDEV 110
Query: 1339 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
++ V + ++ + SG GQ+Q + LARAL+K KVL DE +N+D
Sbjct: 111 EKRVVEIARKLLIDNLLDRKPTQLSG-----GQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 1390 A 1390
A
Sbjct: 166 A 166
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 55/228 (24%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 673
++ VS + G VA++G G GK++ L + G T G I+
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 674 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 721
+ V P + T+ +NI F + + + A L +D
Sbjct: 77 VGMVFQNYALYPHM------TVFENIAFPLRARRISKDEVEKRVVEIARKLLID------ 124
Query: 722 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 773
+ K LSGGQ+ R+ALARA+ + + D+ LS +DA ++ L
Sbjct: 125 ---NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH--L 179
Query: 774 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L T + TH+ +A++ A + V ++G++ G+ ++
Sbjct: 180 Q------QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 7e-05
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 734 LSGGQRA------RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSGG+R RLA++ + + +LD+ +D + R ++ +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQV 307
Query: 788 ILCTHNVQAISAADMVVVMDKG 809
IL +H+ + AAD V+ +
Sbjct: 308 ILVSHDEELKDAADHVIRISLE 329
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 1211 QSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1270
SL +W G +F T + L + V ++G+ G GKSS +N+L
Sbjct: 2 GSLVREW--VGFQQFPAAT---QEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL 56
Query: 1271 -----FRLTPI-------CGGQILVDG--LNIINTP 1292
R++P + G +NII+TP
Sbjct: 57 IGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTP 92
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 640 VAVIGEVGSGKSSLLNSILGE 660
V V+G+ G GKSS +NS++GE
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE 59
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 45.4 bits (106), Expect = 2e-04
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 677
+ V+G++ GKS+ LN+++GE +L + + +
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVL 109
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671
VAV GE GSGKSS +N++ G G+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 103
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 8e-04
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 1167 SYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQ 1226
+++P + SSFT K+ + +++ QE L + Q
Sbjct: 4 LFSSPKSDENNDLPSSFTGYFKKFNTGRKII-----SQEILNLIELRMRAGNIQLTNSA- 57
Query: 1227 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1271
+ AL +I+ V + G TG+GKSS +N L
Sbjct: 58 ---------ISDALKEID---SSVLNVAVTGETGSGKSSFINTLR 90
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 19/97 (19%)
Query: 734 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWILSNAIMGPH-MLQ 784
LSGGQR R+A+ R + +++LD+ LS +DA +++R L H L
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--L-------HKRLG 184
Query: 785 KTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
+T I TH+ V+A++ AD +VV+D G+V +G +L
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ QNVT + DIN I G V VG +G GKS++L + L I G +
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1338
+ + +TP + RG +V QS P L S+ +N M+ LK+ + +K +
Sbjct: 62 IGEKRMNDTPPAE-RG-VGMVFQSYALYPHL---SVAEN-----MSFGLKL-AGAKKEVI 110
Query: 1339 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1389
+ V V L + K SG GQRQ + + R L+ V LDE +N+D
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSG-----GQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 1390 A 1390
A
Sbjct: 166 A 166
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 640 VAVIGEVGSGKSSLLNSILGE 660
+ V+G+ G GKSS +NSI+GE
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGE 62
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1445 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-67 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-49 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-64 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-45 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-59 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-42 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-58 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-45 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-57 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-43 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-54 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-54 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-36 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-35 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-29 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-34 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-33 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-30 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-31 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-30 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-30 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-20 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-29 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-29 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-13 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-06 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.002 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.002 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.002 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 0.002 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 226 bits (577), Expect = 1e-67
Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 3/222 (1%)
Query: 1215 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1274
P QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1275 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-DPFHMNDDLKIWSVL 1333
+ GQIL+DG NI + LR + +V Q LF ++++N+ D ++
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 1334 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1391
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 1392 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1433
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH+
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHI 230
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 174 bits (442), Expect = 2e-49
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + +L ++L + KG VA +G G GKS+L+N I +T G I G
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 86
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
I V Q + S T+++NIL G + E K I + G
Sbjct: 87 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 146
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+GE+GV LSGGQ+ RL++AR + I +LD+ SA+D + I + +
Sbjct: 147 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ--EALDVLSKDR 204
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
T ++ H + I+ AD +VV++ G + G+ +L
Sbjct: 205 TTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 239
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 215 bits (549), Expect = 8e-64
Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 4/222 (1%)
Query: 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
G +EF+NVT Y AL +IN I G V +VGR+G+GKS+I + + R I G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1280 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN--LDPFHMNDDLKIWSVLEKCH 1337
IL+DG ++ + LR + A+V Q+ LF ++ +N +I +
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1338 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
+ + + GL+T + E+G+ S GQRQ I +ARALL+ S +L LDE T+ +D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1396 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
+Q A+ K T + IAHR+ST+ DEI++++ G + G
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERG 232
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 162 bits (411), Expect = 3e-45
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 19/228 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 83
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDM 724
+A V Q + + T+ +NI + + Y + E + I+ M G
Sbjct: 84 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 143
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I A +
Sbjct: 144 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ--AALDELQKN 201
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
+T ++ H + I AD +VV++ G + G+ ++L +Y+
Sbjct: 202 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 200 bits (511), Expect = 7e-59
Identities = 77/218 (35%), Positives = 118/218 (54%), Gaps = 3/218 (1%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1341
+DG ++ LR + VV Q L S+ DN+ + K+ + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1342 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
+ + G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1400 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
+ CKG TVI IAHR+STV N D I++++ G + G
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 219
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 153 bits (388), Expect = 2e-42
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 673 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 725
+ V Q +L+ +I DNI + K IS + G
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNT 131
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M +
Sbjct: 132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKGR 189
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
T I+ H + + AD ++VM+KG++ G +L SLYS +
Sbjct: 190 TVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 200 bits (509), Expect = 2e-58
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 8/233 (3%)
Query: 1212 SLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1270
L+P +GL++FQ+V+ Y L + FT+ G +VG G+GKS++ L
Sbjct: 2 LLTP-LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 1271 FRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLK 1328
L GGQ+L+DG + R L + A V Q P +F SL++N+ +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 1329 IWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1386
I + K + + G +T V E+G S GQRQ + LARAL++ VL LD+ T+
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 1387 NVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
+DA + ++ + S E +V+ I +S V D IL L+ G + G
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGG 233
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 162 bits (411), Expect = 2e-45
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 620 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 672
+VL ++ L G + A++G GSGKS++ + T G + G
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 82
Query: 673 ------SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVGGDM 724
+A V Q P + ++++NI +G P + + IS + G
Sbjct: 83 HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142
Query: 725 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 784
+ E G LSGGQR +ALARA+ + +LDD SA+DA + P
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202
Query: 785 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
++ +L T ++ + AD ++ ++ G ++ G+ L
Sbjct: 203 RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 195 bits (496), Expect = 8e-57
Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 5/220 (2%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++ ++V Y S L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVK 1339
+DG I N + + R + V Q + G++R+NL D +W VL+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1340 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1398 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCG 1437
A+ S KG T + IAHR+ST+++ D+I ++ G + G
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG 219
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 154 bits (391), Expect = 8e-43
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
+L +S S++A G G GKS++ + + T G I G
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 673 SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I +V Q I++GTIR+N+ +G +Y + + L + M +GE+
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
GV +SGGQR RLA+ARA I MLD+ +++D++ + + M +T ++
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA--LDSLMKGRTTLVI 194
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 830
H + I AD + ++KGQ+ G +L LY+ + S
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 190 bits (483), Expect = 1e-54
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 24/254 (9%)
Query: 1191 VSLERVLEYMDVPQEELCGYQSLSPD----WPFQGLIEFQNVTMRYKPSLPAALHDINFT 1246
+ +E V + + EL S + + F ++ + P L +IN
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1247 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1306
IE G + I G TG+GK+S+L + G I GR + Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------GRVSFCSQF 105
Query: 1307 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQ 1364
++ G++++N+ D+ + SV++ C +++++ T + E G++ S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1365 LICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLNMD 1423
I LARA+ K + + LD +D T + ++ + T I + ++ + D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1424 EILILDHGHLPHCG 1437
+ILIL G G
Sbjct: 226 KILILHQGSSYFYG 239
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 189 bits (482), Expect = 2e-54
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 685
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 110
Query: 686 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745
GTI++NI+FG +YD Y +KAC L DI+ D +GE GV LSGGQRAR++LA
Sbjct: 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 805
RAVY +D+Y+LD +D + + + M KTRIL T ++ + AD +++
Sbjct: 171 RAVYKDADLYLLDSPFGYLDVFTEEQVF-ESCVCKLMANKTRILVTSKMEHLRKADKILI 229
Query: 806 MDKGQVKWIGSSADL---AVSLYSGFWSTNEFD 835
+ +G + G+ ++L S + FD
Sbjct: 230 LHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFD 262
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 135 bits (340), Expect = 4e-36
Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 22/225 (9%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 55
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
G + L A + Q + + H +D + + +
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR------TELLNDV 109
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSS-------KVLCLDECTANVDAQTAS 1394
A+ L+ + S S G+ Q + LA +L+ + ++L LDE ++D S
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 1395 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
L +S+ +G+ ++ +H ++ L +L G + G
Sbjct: 170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 214
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 4e-21
Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 37/219 (16%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
L +S + G ++ ++G G+GKS+LL + G M GSI +G
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLAL 72
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
AY+ Q + + ++ + ++ A LD +G
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGR 121
Query: 730 KGVNLSGGQRARLALARAVYH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782
LSGG+ R+ LA V + +LD+ ++++D + +
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQ 180
Query: 783 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
++ +H++ + A ++ G++ G ++
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 132 bits (333), Expect = 3e-35
Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 11/223 (4%)
Query: 1222 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+I+ +NVT YK AL ++N I+ G V I+G +G+GKS++LN + L G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1280 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1333
++ +D + + +L R + V Q L + +N++ P +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 1334 EKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1392
+ E ++ L E F S GQ+Q + +ARAL + ++ D+ T +D++T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1393 ASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1433
+ + + G TV+ + H I+ + I+ L G +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 9e-29
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 18/216 (8%)
Query: 618 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 672
EE L V+L + +G V+++G GSGKS++LN I T G ++
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 673 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 719
I +V Q ++ T +N+ + + + ++ M
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
+ + K LSGGQ+ R+A+ARA+ + I + D A+D++ I+
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 780 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815
KT ++ TH++ + ++ + G+V+
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 131 bits (330), Expect = 1e-34
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 11/221 (4%)
Query: 1222 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1279
+I+ N+T + AL++++ + G G++G +GAGKS+++ + L G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 1280 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEK 1335
+LVDG + + R + ++ Q L ++ N+ D+ V +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 1336 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1395
V E + VGL + S GQ+Q + +ARAL + KVL DE T+ +D T
Sbjct: 121 --VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1396 LQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ + + G+T++ I H + V + D + ++ +G L
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 3e-26
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 673 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG-GDMA-- 725
I + Q +L S T+ N+ D E + T ++ +VG GD
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVGLGDKHDS 136
Query: 726 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
Y LSGGQ+ R+A+ARA+ + + D+ SA+D R IL L
Sbjct: 137 YPSN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 786 TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
T +L TH + D V V+ G++ + +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 127 bits (321), Expect = 2e-33
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 10/219 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ +N+T R+ A++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
+ T + ++V QS ++ ++ +N+ + ++ V+
Sbjct: 65 FGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR--VRWA 120
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
E + +E + S GQRQ + +ARA++ VL +DE +N+DA+ ++ I
Sbjct: 121 AELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 1402 SECK--GMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ +T I + H + M D I +++ G L G
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 219
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 117 bits (294), Expect = 8e-30
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 17/209 (8%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673
+N+++L + G + ++G G GK++ L I G T G I+ +
Sbjct: 20 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79
Query: 674 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 732
I+ V Q + T+ +NI F E K V + + +
Sbjct: 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR----VRWAAELLQIEELLNRYPA 135
Query: 733 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQR R+A+ARA+ D+ ++D+ LS +DA++ + + L+ T I TH
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 793 NVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ A++ D + VM++GQ+ IGS ++
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 125 bits (316), Expect = 1e-32
Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 20/228 (8%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1283 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK 1328
V+G NI +D LR R +V Q L+ ++ +N+ + L
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLG 119
Query: 1329 IWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTAN 1387
+ + + + VG++ + S GQ+Q + +ARAL VL DE T+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 1388 VDAQT-ASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+D + +L+ +G T++ + H + ++ ++ L G +
Sbjct: 180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 4e-25
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 33/226 (14%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
+ VL VSL G ++++IG GSGKS+ L I + G+I +G
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 673 ---------------SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVD 715
+ V Q + S T+ +N++ S + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA---LK 131
Query: 716 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 775
VG D G+ V+LSGGQ+ R+++ARA+ D+ + D+ SA+D ++ +L
Sbjct: 132 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL-R 190
Query: 776 AIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 820
+ KT ++ TH + A + V+ + +G+++ G +
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 120 bits (302), Expect = 7e-31
Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 17/227 (7%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++ +N+ + AL ++ ++ G I+G G+GKS+++N + G++
Sbjct: 4 ILRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1282 LVDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNL-------DPFHMNDDLKIWSV 1332
+ +I N +L Q+P + ++ +NL +N +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1333 LEKCHVKEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1388
++ + E+ E + L S GQ +L+ + RAL+ + K++ +DE A V
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 1389 DAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHL 1433
A + N + KG+T + I HR+ VLN D + ++ +G +
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (268), Expect = 2e-26
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 26/228 (11%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 673 ---SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL---------KACTLDVDISLM 719
I Q P L T+ +N+L G+ +S +L + L
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 779
K LSGGQ + + RA+ + ++D+ ++ V +A I N ++
Sbjct: 137 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLE 195
Query: 780 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLAVSLYS 826
T ++ H + ++ D + VM GQ+ G + ++ S
Sbjct: 196 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 119 bits (300), Expect = 1e-30
Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 12/224 (5%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+ +V + A+ +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1282 LVDGLNII----NTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1336
+ + V A+V QS L+ ++ DN+ + + ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR- 119
Query: 1337 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
V+E E +GL + S GQRQ + L RA+++ +V +DE +N+DA+ +
Sbjct: 120 -VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 1397 QNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ + G+T I + H + M D I +++ G L G
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 103 bits (257), Expect = 6e-25
Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI-------A 675
+ + ++SL + G + ++G G GK++ L I G + G I+ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISLMVGGDMAYI 727
+VP ++ + L+ + + LK + +++ ++G + +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG--LTEL 132
Query: 728 GEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 786
+ LSGGQR R+AL RA+ ++++D+ LS +DA++ + + L T
Sbjct: 133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 787 RILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
I TH+ A++ D + VM++G ++ +GS ++
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 119 bits (299), Expect = 1e-30
Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 14/223 (6%)
Query: 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280
G + +++ R L I+F IE G G++G GAGK++ L + L G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1281 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+ V G N++ P ++R + +P+ N+ + + ++E
Sbjct: 59 VTVFGKNVVEEP-HEVRKLISYLPEEA-----GAYRNMQGIEYLRFVAGFYASSSSEIEE 112
Query: 1341 EVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1396
VE GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A +
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 1397 QNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ + + G+T++ +H + V + D I ++ +G + G
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 215
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (260), Expect = 2e-25
Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 19/211 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 673
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74
Query: 674 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
I+Y+P+ + + F + S SE + V+ + + G I ++
Sbjct: 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM----VERATEIAGLGEKIKDR 130
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
S G +L +ARA+ + +LD+ S +D AR + + T ++
Sbjct: 131 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV-RKILKQASQEGLTILVS 189
Query: 791 THNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+HN+ D + ++ G + G+ +L
Sbjct: 190 SHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 115 bits (290), Expect = 8e-30
Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1223 IEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+E +++++ Y KP L I TIE G V G G GK+++L + G+I
Sbjct: 3 LEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1340
+ +G P+ ++G+ +P+ + S+ D L +K+ K + +
Sbjct: 59 IYNG-----VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEIMD 109
Query: 1341 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400
+E+V + K+ S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 110 ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 168
Query: 1401 SSECK--GMTVITIAHRISTVLNMDEILIL 1428
K G+ +I+ +S D L
Sbjct: 169 LEILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 88.1 bits (218), Expect = 4e-20
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 19/194 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 675
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 73
Query: 676 YVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 734
++P+ + ++ D + + ++ L+ V + + +K L
Sbjct: 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE-----SVE--VLDLKKKLGEL 126
Query: 735 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
S G R+ LA + ++IY+LDD + A+D +L + + I
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE- 185
Query: 795 QAISAADMVVVMDK 808
+S D+ + K
Sbjct: 186 --LSYCDVNENLHK 197
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 116 bits (292), Expect = 1e-29
Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 8/220 (3%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1282 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1339
+ +G +I N P + A+VP+ +F ++ +NL N K +++
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN--RKDKEGIKRDLEW 121
Query: 1340 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1399
L+ +K+ G + S G++Q++ + RAL+ K+L +DE + + S +
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 1400 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
I + G T++ + L + +L+ G + G
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEG 221
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 103 bits (257), Expect = 6e-25
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 21/213 (9%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------- 668
+ + L +P+G +V +IG G+GK++ L++I G + G I
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 669 HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 728
+ G T+ +N++ G I + +
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL----EWIFSLFPRLKERLK 134
Query: 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 788
+ G LSGG++ LA+ RA+ + M+D+ + + + I + T +
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV-FEVIQKINQEGTTIL 193
Query: 789 LCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
L N A+ A V++ GQ+ G +++L
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 115 bits (289), Expect = 3e-29
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 10/219 (4%)
Query: 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282
++ QNVT + + DIN I G V VG +G GKS++L + L I G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1283 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
+ + +TP +V QS L+ S+ +N+ K + ++ V +
Sbjct: 59 IGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--VNQV 114
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
E + L + + S GQRQ + + R L+ V LDE +N+DA ++ IS
Sbjct: 115 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 1402 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLPHCG 1437
+ G T+I + H + + D+I++LD G + G
Sbjct: 175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 213
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 6e-25
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 623 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672
+ VV ++L + +G V +G G GKS+LL I G +T G +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 71
Query: 673 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+ V Q + ++ +N+ FG + ++ +
Sbjct: 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 130
Query: 731 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQR R+A+ R + +++LD+ LS +DA + + L +T I
Sbjct: 131 ---LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187
Query: 791 THNV-QAISAADMVVVMDKGQVKWIGSSADL 820
TH+ +A++ AD +VV+D G+V +G +L
Sbjct: 188 THDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 111 bits (279), Expect = 4e-28
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 12/215 (5%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1282 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1341
L+DG T + + A V Q+ LF ++ +++ + + V +
Sbjct: 58 LLDG--KDVTDLSPEKHDIAFVYQNYSLFPHMNVKK----NLEFGMRMKKIKDPKRVLDT 111
Query: 1342 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1401
+ +E + + ++ S G++Q + LARAL+ + K+L LDE + +D +T + +S
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 1402 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ +TV+ I H + M D I ++ G L
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 97.8 bits (243), Expect = 3e-23
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 28/214 (13%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N L+ +SL + G ++G G+GK+ L I G + G I G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 673 SIAYVPQVPWILSG-TIRDNILF----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
IA+V Q + ++ N+ F K DP+ +T + + +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLL 121
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + + T
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
+ TH+ A AD + V+ G++ +G ++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 107 bits (268), Expect = 2e-26
Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 9/219 (4%)
Query: 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1281
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1282 LVDGLNIINTPVRDLRGRF---AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1337
D + + + +V Q+ L+ + +N+ N + + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-- 120
Query: 1338 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1397
V+E + + + + S Q+Q + LARAL+K +L LDE +N+DA+ +
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 1398 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1433
+ G+T++ ++H + + + D + +L G L
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 95.9 bits (238), Expect = 2e-22
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Query: 625 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672
V L+ V++ + G ++G G+GK++ + I G + + G ++
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 673 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 727
I V Q + T +NI F S E K V+ + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR----VEEVAKILDIHHVL 134
Query: 728 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
LSG Q+ R+ALARA+ + +LD+ S +DA++ + L T
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 788 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
++ +H+ + AD V V+ KG++ +G DL
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 96.2 bits (239), Expect = 1e-22
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 1242 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301
+++F + ++G TGAGKS L + + G++ ++G +I TP+ R
Sbjct: 17 NVDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1302 VVPQSPFLFE--GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1359
VPQ LF R+ + ++ V+E E +G+ + S
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERD-----RRVREMAEKLGIAHLLDRKPARLS 128
Query: 1360 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRIS 1417
G+RQ + LARAL+ ++L LDE + VD +T +L + + ++ + H +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1418 TVLNM-DEILILDHGHLPHCG 1437
+ DE+ ++ +G + G
Sbjct: 189 EAAMLADEVAVMLNGRIVEKG 209
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 90.5 bits (224), Expect = 1e-20
Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 21/210 (10%)
Query: 624 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672
N LN V + + ++G G+GKS L I G + G + +G
Sbjct: 13 NFRLN-VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70
Query: 673 SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
I +VPQ + ++ NI +G + + V G + K
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR------VREMAEKLGIAHLLDRKP 124
Query: 732 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LSGG+R R+ALARA+ + +LD+ LSAVD + ++ + T
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 792 HNVQ-AISAADMVVVMDKGQVKWIGSSADL 820
H++ A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 74.3 bits (181), Expect = 1e-15
Identities = 17/181 (9%), Positives = 35/181 (19%), Gaps = 26/181 (14%)
Query: 1253 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1312
+ I G G GK++++ + + + T R +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1313 SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1372
+++ + A
Sbjct: 63 FFTSKKLVGSYGVNVQYF--------------------------EELAIPILERAYREAK 96
Query: 1373 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1432
KV+ +DE + V+ + EI L
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156
Query: 1433 L 1433
L
Sbjct: 157 L 157
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 66.9 bits (162), Expect = 5e-13
Identities = 15/178 (8%), Positives = 40/178 (22%), Gaps = 17/178 (9%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYD 699
+ + GE G GK++L+ I+ + +RD +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRTGF 47
Query: 700 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759
+E K + + + A A + ++D+
Sbjct: 48 RIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107
Query: 760 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 817
+ ++ H + + + + +
Sbjct: 108 I--GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 16/171 (9%), Positives = 46/171 (26%), Gaps = 9/171 (5%)
Query: 1253 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1312
V + G G GK+++++ + G + + R + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1313 SLRDNLDPFHMNDDLKIWSVLEK--------CHVKEEVEAVGLETFVKESGISFSVGQRQ 1364
+ + L + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1365 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1415
I R L + + L + ++++ + + + +T +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 3/300 (1%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSF 334
+ I G+ ++N + LL L+ F + L L + + +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 335 FDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN 394
+ + Y K+ + + + V ++ + + + +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 395 SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKD 454
IG+ + + Y + + + + I+ I + + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 455 ERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTL 514
+ H L G E + + ++ +
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 515 FSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFL 573
+ F + L A + + +L+ PL S V + + L L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 33/307 (10%), Positives = 84/307 (27%), Gaps = 10/307 (3%)
Query: 277 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 335
Y Y ++ ++ I PLL+ I + + D V + + + L F
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 336 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 395
+ + L +S + + + V + ++ +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 396 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 455
+ I + + + F + +T+ + + + + ++ K E
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 456 RIRRTGEILTHIR---------TLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 506
R + E+ + + + T TR ++
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 507 FWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISI 566
T + G + + + + + L PL L +F S+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 567 RRLTRFL 573
R+ + +
Sbjct: 312 DRVFQLI 318
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.1 bits (93), Expect = 0.002
Identities = 23/133 (17%), Positives = 36/133 (27%), Gaps = 33/133 (24%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYD 699
VAV GE GSGKSS +N++ G G+ + + +
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG------------VVEVTMERHPYKHPNI 106
Query: 700 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 759
P D+ IG L + + I +
Sbjct: 107 PNVVFW-----------------DLPGIGSTNFPP----DTYLEKMKFYEYDFFIIISAT 145
Query: 760 VLSAVDAQVARWI 772
D +A+ I
Sbjct: 146 RFKKNDIDIAKAI 158
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 38.8 bits (89), Expect = 0.002
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 1253 VGIVGRTGAGKSSILNALFR------------LTPICGGQILVDGLNIINTPVRDLRGRF 1300
VG+VG GKS++L+ + L P G DG + + DL G
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVM---ADLPGLI 60
Query: 1301 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1337
Q L LR + + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDP 97
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 39.4 bits (91), Expect = 0.002
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668
L LP+ + V+G SGKSS+L +I+G L GS
Sbjct: 22 LDLPQ---IVVVGSQSSGKSSVLENIVGRDFLPRGSG 55
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.5 bits (91), Expect = 0.002
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671
L LP+ +AV+G +GKSS+L + +G L GS +
Sbjct: 24 LDLPQ---IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 38.1 bits (87), Expect = 0.003
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1253 VGIVGRTGAGKSSILNAL 1270
VG+VG AGKSS+L A+
Sbjct: 4 VGLVGYPNAGKSSLLAAM 21
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1445 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.91 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.9 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.63 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.61 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.44 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.31 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.16 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.06 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.67 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.65 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.49 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.48 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.21 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.83 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.74 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.54 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.48 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.35 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.29 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.95 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.91 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.86 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.7 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.42 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.39 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.17 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.08 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.06 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.93 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.88 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.82 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.81 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.71 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.69 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.69 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.63 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.62 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.61 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.16 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.15 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.1 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.08 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.99 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.98 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.79 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.73 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.55 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.49 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.46 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.41 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.38 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.26 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.25 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.15 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.14 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.13 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.11 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.1 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.1 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.06 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.05 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.04 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.99 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.97 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.95 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.94 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.93 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.91 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.88 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.8 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.73 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.67 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.63 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.58 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.43 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.4 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.39 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.28 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.18 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.16 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.14 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.14 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.96 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.94 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.83 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.81 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.81 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.74 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.7 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.68 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.67 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.64 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.53 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.49 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.44 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.42 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.39 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.37 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.35 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.35 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.31 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.22 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.22 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.15 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.09 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.0 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 90.98 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.84 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.84 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.84 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.79 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.75 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.71 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.66 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.5 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.44 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.41 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.35 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.28 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.28 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.18 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.18 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.1 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.0 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 89.98 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.89 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.77 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.71 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.67 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 89.62 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.62 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.56 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.53 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.49 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 89.46 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 89.37 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.26 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.22 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.2 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 89.17 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.07 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.07 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.02 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.01 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.98 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.91 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.87 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.82 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 88.77 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.76 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.69 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.58 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.56 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.46 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.3 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.26 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.22 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.18 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.12 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.1 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.08 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.07 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.05 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.98 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.97 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.94 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 87.92 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.88 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 87.85 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.84 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.59 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.55 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.54 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.52 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 87.42 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.31 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.28 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.15 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.14 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.13 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.07 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.04 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.04 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 86.98 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.98 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.96 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.86 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 86.77 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 86.74 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 86.64 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.61 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.39 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 86.27 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 86.2 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.2 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.19 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 86.18 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 85.96 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.93 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.83 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.82 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 85.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 85.77 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 85.69 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.63 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 85.63 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.53 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.49 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.35 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.23 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.1 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.06 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.91 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.88 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.83 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.8 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.8 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 84.78 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.77 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.74 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.73 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.72 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 84.52 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 84.44 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.41 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.32 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 84.28 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 84.27 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.2 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 84.11 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.05 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.0 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 83.99 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 83.97 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 83.95 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.92 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 83.89 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 83.84 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 83.73 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.66 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.64 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.61 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 83.43 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 83.41 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 83.35 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.32 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 83.3 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.27 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 83.27 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.24 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.17 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 83.17 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.16 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 83.15 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.1 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.05 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 82.96 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 82.89 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.89 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.89 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.85 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.82 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.77 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 82.76 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 82.73 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 82.69 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 82.68 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 82.67 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.66 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 82.65 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 82.61 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.58 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 82.55 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 82.53 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 82.5 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 82.46 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.36 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 82.35 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.28 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 82.27 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.24 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 82.19 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 82.13 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 82.12 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 82.1 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 81.92 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 81.79 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.71 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 81.71 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 81.67 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 81.62 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 81.58 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 81.55 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.47 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 81.41 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 81.41 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 81.4 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 81.37 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 81.34 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 81.31 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 81.28 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.24 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.21 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 81.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 81.19 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 81.14 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 81.14 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 81.1 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.1 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 81.09 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 81.02 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 80.84 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 80.75 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 80.71 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 80.53 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 80.48 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 80.44 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 80.39 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 80.39 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 80.34 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.26 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 80.25 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 80.19 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=462.53 Aligned_cols=220 Identities=35% Similarity=0.546 Sum_probs=213.1
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 29999999984799996320013998589399998799998889999883479898737999796179999275612418
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1301 (1445)
.|+|+||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.|||.|++.++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8827776567547872397999-9927799999981389999958--994055149999993499999999986259979
Q 000522 1302 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1302 ~IpQdp~lF~gTIR~NLdp~~~-~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlLr~~~I 1378 (1445)
+|||+|++|++|||+|+.++.. .++++++.+++.+++.+++..+ |+++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCCC
Q ss_conf 998465668899979999999987279947998516913786519799993974831027999
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1379 LiLDEaTS~lD~~T~~~Iq~~I~~~f~~~TvI~IaHrl~ti~~~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
+|||||||+||+.|++.|.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|.+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~e 223 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKE 223 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 556477655598999999999999858998999978899998499999998999999889999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=461.61 Aligned_cols=224 Identities=32% Similarity=0.530 Sum_probs=215.9
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 98762999999998479999632001399858939999879999888999988347989873799979617999927561
Q 000522 1218 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1297 (1445)
Q Consensus 1218 p~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR 1297 (1445)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2418882777656754787239799-99927799999981389999958--99405514999999349999999998625
Q 000522 1298 GRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1298 ~~i~~IpQdp~lF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlLr 1374 (1445)
++++||||+|.+|+||||+|+..+. ..+|++++++++.+++.+++..+ |+|+.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCCC
Q ss_conf 9979998465668899979999999987279947998516913786519799993974831027999
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1375 ~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f~~~TvI~IaHrl~ti~~~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
+|+|+|||||||+||.+|+..|.+.|++..+++|+|+||||++.+..||+|++|++|+|+|.|+|.+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~e 238 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRE 238 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9989998376544797799999999998753888999968999998599999998999999889999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=452.38 Aligned_cols=223 Identities=34% Similarity=0.521 Sum_probs=214.4
Q ss_pred CCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 87629999999984799996320013998589399998799998889999883479898737999796179999275612
Q 000522 1219 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1298 (1445)
Q Consensus 1219 ~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~ 1298 (1445)
..|.|+|+||+|+|+....++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.++.+.+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 41888277765675478723979--999927799999981389999958--99405514999999349999999998625
Q 000522 1299 RFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1299 ~i~~IpQdp~lF~gTIR~NLdp~--~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlLr 1374 (1445)
+++++||+|.+|++|+++|+..+ ...++++++++++.+++.++++.+ |||+.+++.|.+||||||||+|||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCCC
Q ss_conf 9979998465668899979999999987279947998516913786519799993974831027999
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1375 ~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f~~~TvI~IaHrl~ti~~~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
+|+|||||||||+||.+|+..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|.+
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~e 236 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE 236 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9988995164445898899999999987522788999988799998599999998999999889999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=444.10 Aligned_cols=225 Identities=30% Similarity=0.438 Sum_probs=211.2
Q ss_pred CCCCCCEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 9987629999999984799-996320013998589399998799998889999883479898737999796179999275
Q 000522 1217 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD 1295 (1445)
Q Consensus 1217 wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~ 1295 (1445)
++.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHCCEEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 61241888277765675478723979--999927799999981389999958--99405514999999349999999998
Q 000522 1296 LRGRFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARA 1371 (1445)
Q Consensus 1296 lR~~i~~IpQdp~lF~gTIR~NLdp~--~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARA 1371 (1445)
+|+++++|||+|.+|++|||+|+..+ ...++++++++.+++++.++++.+ |+++.+++.|.+||||||||+|||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCCC
Q ss_conf 6259979998465668899979999999987279--947998516913786519799993974831027999
Q 000522 1372 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1372 lLr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f~--~~TvI~IaHrl~ti~~~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
++++|+|+|||||||+||..|+..|++.|++..+ ++|+|+||||++.+..||+|+||++|+|+|.|+|.+
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~e 237 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQ 237 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 456870787167576568536899999999976506989999959799998599999998999999889999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=449.51 Aligned_cols=218 Identities=33% Similarity=0.540 Sum_probs=208.4
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99999999847999963200139985893999987999988899998834798987379997961799992756124188
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++||+|+|++ .+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+++.+.+|+++++
T Consensus 2 le~knvsf~Y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 799988998799-9841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8277765675478723979--999927799999981389999958--994055149999993499999999986259979
Q 000522 1303 VPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1378 (1445)
Q Consensus 1303 IpQdp~lF~gTIR~NLdp~--~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlLr~~~I 1378 (1445)
|||+|.+|++|+|+|+..+ ...++++++++++.+++.+++..+ ++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCCC
Q ss_conf 998465668899979999999987279947998516913786519799993974831027999
Q 000522 1379 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1379 LiLDEaTS~lD~~T~~~Iq~~I~~~f~~~TvI~IaHrl~ti~~~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
++||||||+||.+++..|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|.+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~e 223 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNE 223 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 996588655698899999887888717998999978799998499999998999999999999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=406.39 Aligned_cols=214 Identities=26% Similarity=0.401 Sum_probs=200.9
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49998007861568863335540110268509979999958998378999998638468870899819------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------ 672 (1445)
.|+++|++|+|+.+. ++. |+|+||+|++|+.++|+|++|||||||+++|+|.+++.+|+|.++|
T Consensus 1 eI~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 1 DITFRNIRFRYKPDS-PVI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEEESSTTS-CEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CEEEEEEEEEECCCC-CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHH
T ss_conf 929999999908999-603---7424899849999999999999899999999735788888999999994400246553
Q ss_pred -EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -0999838887888458899723999-99343999999806527786116997212037988662489999999999813
Q 000522 673 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1445)
Q Consensus 673 -~iayv~Q~pwl~n~TIreNIlfg~~-~d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~ 750 (1445)
.|+||+|+||++++||+|||.++.+ .+.+++..+++.|.+.+++..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp HHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 52889824465578400035223575543888999999975578887632013443278788669889898754434441
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99999980887671899999999996419566896599972581046417989999498799952976887300
Q 000522 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 824 (1445)
Q Consensus 751 ~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~ 824 (1445)
+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|++.|+++++..+.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRN-MHK-ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHH-HHH-HHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 6513556477655598999999999-999-85899899997889999849999999899999988999998299
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=408.78 Aligned_cols=222 Identities=28% Similarity=0.401 Sum_probs=204.5
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98449998007861568863335540110268509979999958998378999998638468870899819---------
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1445)
Q Consensus 602 ~~~~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g--------- 672 (1445)
....|+++|++|+|+.+. .++ |+|+||+|++|+.++|+|++|||||||++.|+|.+++.+|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCEEEEEEEEEEECCCC-CCC---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 788799998899959999-760---6443899839989999889998099999999712786300015399875307888
Q ss_pred ----EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----0999838887888458899723999-99343999999806527786116997212037988662489999999999
Q 000522 673 ----SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1445)
Q Consensus 673 ----~iayv~Q~pwl~n~TIreNIlfg~~-~d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARA 747 (1445)
.|+||+|+|+++++||||||.||.+ .++++..++++.|++.+++..+|+|.+|.+|++|.+|||||||||+||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 81399999980887671899999999996419566896599972581046417989999498799952976887300368
Q 000522 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSG 827 (1445)
Q Consensus 748 vY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~~~ 827 (1445)
+|.+|+|++||||+|+||+++++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|++.|+++|+.+..+.+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~-l~~-l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEA-LDV-LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHH-HHH-HTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 8559989998376544797799999999-998-75388899996899999859999999899999988999998688499
Q ss_pred CC
Q ss_conf 65
Q 000522 828 FW 829 (1445)
Q Consensus 828 ~~ 829 (1445)
.+
T Consensus 247 ~~ 248 (255)
T d2hyda1 247 EH 248 (255)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=402.28 Aligned_cols=223 Identities=28% Similarity=0.391 Sum_probs=205.4
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98449998007861568863335540110268509979999958998378999998638468870899819---------
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1445)
Q Consensus 602 ~~~~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g--------- 672 (1445)
....|+++|++|+|+... .+. |+|+||+|++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~~-~~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCEEEEEEEEEEEECCCC-CCE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 830799998899929999-763---5332899859999999999998599999998621688846898788012111066
Q ss_pred ----EEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----099983888788845889972399--99934399999980652778611699721203798866248999999999
Q 000522 673 ----SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1445)
Q Consensus 673 ----~iayv~Q~pwl~n~TIreNIlfg~--~~d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLAR 746 (1445)
.++||+|+|+++++|+++|+.++. .++.+++.++++.|++.++++.+|+|.+|.+|++|.+|||||||||+|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 98139999998088767189999999999641956689659997258104641798999949879995297688730036
Q 000522 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYS 826 (1445)
Q Consensus 747 AvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~~ 826 (1445)
|++.+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++|++++.+.
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~ 243 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 243 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHH-HHH-HHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCH
T ss_conf 99549988995164445898899999999-987-5227889999887999985999999989999998899999868939
Q ss_pred CCCC
Q ss_conf 8654
Q 000522 827 GFWS 830 (1445)
Q Consensus 827 ~~~~ 830 (1445)
+.++
T Consensus 244 y~~l 247 (253)
T d3b60a1 244 YAQL 247 (253)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=395.11 Aligned_cols=221 Identities=24% Similarity=0.318 Sum_probs=200.2
Q ss_pred CCEEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC----------
Q ss_conf 8449998007861568863335540110268509979999958998378999998638468870899819----------
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 672 (1445)
Q Consensus 603 ~~~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g---------- 672 (1445)
+..|+++|++|+|+...+.+. |+|+||+|++|++++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCEEEEEEEEEECCCCCCCEE---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 336999998998899999976---74438998499899999999984999999986143787689988998531101378
Q ss_pred ---EEEEECCCCCCCCCCHHHHHHCCCCC--CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ---09998388878884588997239999--9343999999806527786116997212037988662489999999999
Q 000522 673 ---SIAYVPQVPWILSGTIRDNILFGKNY--DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 747 (1445)
Q Consensus 673 ---~iayv~Q~pwl~n~TIreNIlfg~~~--d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARA 747 (1445)
.++|++|+|+++++||+|||.+|... +.++..+....+++.+.++.+|+|.+|.+|++|.+|||||||||+||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 813999999808876718999999999964195668--965999725810464179899994987999529768873003
Q 000522 748 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLY 825 (1445)
Q Consensus 748 vY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~ 825 (1445)
++++|+|++||||+|+||+++++.|++. +.. +.+ ++|+|++||+++.+..||+|++|++|+|+++|+++|+.+..+
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~-l~~-l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~ 243 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQL-LYE-SPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG 243 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHH-HHT-CGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 4568707871675765685368999999-999-76506989999959799998599999998999999889999985975
Q ss_pred CCC
Q ss_conf 686
Q 000522 826 SGF 828 (1445)
Q Consensus 826 ~~~ 828 (1445)
.+.
T Consensus 244 ~y~ 246 (251)
T d1jj7a_ 244 CYW 246 (251)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 889
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=393.70 Aligned_cols=214 Identities=36% Similarity=0.635 Sum_probs=197.2
Q ss_pred CCEEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCC
Q ss_conf 84499980078615688633355401102685099799999589983789999986384688708998190999838887
Q 000522 603 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682 (1445)
Q Consensus 603 ~~~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pw 682 (1445)
+..+.++|.+|. ..|+ |+|+||+|++|++++|+||+|||||||+++|+|.+++++|+|.++|+++||+|.||
T Consensus 36 ~~~i~~~~~~~~-----g~pv---L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~ 107 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPV---LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 107 (281)
T ss_dssp ----CHHHHHHT-----TCEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCC
T ss_pred CCCEEEEECCCC-----CCEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
T ss_conf 896799976989-----9767---73759998599999999899982999999995797478828999999999816430
Q ss_pred CCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 88845889972399999343999999806527786116997212037988662489999999999813999999808876
Q 000522 683 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 762 (1445)
Q Consensus 683 l~n~TIreNIlfg~~~d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplS 762 (1445)
++++||+|||.||..+++.+++.++++|.+..|+..+|+|+.|.+|++|.+|||||||||+||||++++|+|++||||+|
T Consensus 108 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 108 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp CCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 26760321420333456057999999977699998461233235555423779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 718999999999964195668965999725810464179899994987999529768873003
Q 000522 763 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLY 825 (1445)
Q Consensus 763 aLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~ 825 (1445)
+||+.+.+.|++.++.. +.+++|+|++||+++.+..||+|++|++|++++.|+++|++....
T Consensus 188 ~LD~~~~~~i~~~~~~~-~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~ 249 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCK-LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 249 (281)
T ss_dssp SSCHHHHHHHHHHCCCC-CTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHH-HHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCC
T ss_conf 48989999999999988-628999999925289998599999998999999878999960594
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=395.30 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=199.7
Q ss_pred EEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9998007861568863335540110268509979999958998378999998638468870899819-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------- 672 (1445)
++++|++|+|+.+ ++. |+|+||++++|++++|+||+|||||||++.|+|.++|.+|+|.++|
T Consensus 2 le~knvsf~Y~~~--~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 76 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (242)
T ss_dssp EEEEEEEECSSSS--SCS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred EEEEEEEEECCCC--CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHH
T ss_conf 7999889987999--841---42258998599999999999997999999999960989877988998844246788874
Q ss_pred EEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 099983888788845889972399--999343999999806527786116997212037988662489999999999813
Q 000522 673 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1445)
Q Consensus 673 ~iayv~Q~pwl~n~TIreNIlfg~--~~d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~ 750 (1445)
.|+||+|+|+++++||||||.++. ..+++...++++.+.+...+..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp TCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred HEEEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36797566545785345430124455542356778999997555420374210152368789879999999999999852
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCCC
Q ss_conf 9999998088767189999999999641956689659997258104641798999949879995297688730036865
Q 000522 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFW 829 (1445)
Q Consensus 751 ~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~G~~~~l~~~~~~~~~ 829 (1445)
+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++|+.+..+.+.+
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~ 233 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKA-LDS-LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHH-HHH-HHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHH
T ss_conf 9989996588655698899999887-888-7179989999787999984999999989999999999999868969999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=381.62 Aligned_cols=205 Identities=25% Similarity=0.395 Sum_probs=188.5
Q ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 76299999999847999963200139985893999987999988899998834798987379997961799992756124
Q 000522 1220 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1299 (1445)
Q Consensus 1220 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~ 1299 (1445)
.+.|+|+|+++. ..|||+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCC----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 896799976989----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 1888277765675478723979999927799999981389999958--99405514999999349999999998625997
Q 000522 1300 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1300 i~~IpQdp~lF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ 1377 (1445)
++|+||+|.+|++|||+|+.++..+++.+++++++.+++...+..+ ++++.+++.|.+||||||||++|||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCCC
Q ss_conf 9998465668899979999999-987279947998516913786519799993974831027999
Q 000522 1378 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1378 ILiLDEaTS~lD~~T~~~Iq~~-I~~~f~~~TvI~IaHrl~ti~~~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
|+|||||||+||+.++..+.+. +....+++|+|+|+||++.+..||||++|++|++++.|+|.+
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~e 243 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSE 243 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 51333855448989999999999988628999999925289998599999998999999878999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-42 Score=345.78 Aligned_cols=213 Identities=25% Similarity=0.328 Sum_probs=178.5
Q ss_pred EEEEEEEEEECCCCC--CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999999998479999--63200139985893999987999988899998834798987379997961799992756----
Q 000522 1223 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL---- 1296 (1445)
Q Consensus 1223 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~l---- 1296 (1445)
|+++||+++|+.+.. .+|+|+||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+...+.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCC-CHHHHCCC---C---CCCCHHHHHHHHHHCCHHHHHHHCCCCHH-HHCCCCCCCHHHHHHHHH
Q ss_conf 1241888277765675-47872397---9---99992779999998138999995899405-514999999349999999
Q 000522 1297 RGRFAVVPQSPFLFEG-SLRDNLDP---F---HMNDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICL 1368 (1445)
Q Consensus 1297 R~~i~~IpQdp~lF~g-TIR~NLdp---~---~~~sd~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LS~GQrQll~L 1368 (1445)
|++|++|+|+|.+|+. |+++|+.. . ...+.++..+. ..+..+..||... .......||||||||++|
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaI 156 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHH
T ss_conf 5557788041241768668887757888722478999999999-----99988762423455348802389999999998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
Q ss_conf 998625997999846566889997999999998727--994799851691378651979999397483102799
Q 000522 1369 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLPHCGCAA 1440 (1445)
Q Consensus 1369 ARAlLr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f--~~~TvI~IaHrl~ti~~~D~I~vl~~G~ivE~g~p~ 1440 (1445)
||||..+|+||++|||||+||+.+...|++.|++.. .++|+|+|+|+++...-||||++|++|+|+|.|+++
T Consensus 157 AraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 157 ARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 75652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-42 Score=345.60 Aligned_cols=211 Identities=23% Similarity=0.330 Sum_probs=183.8
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 29999999984799996320013998589399998799998889999883479898737999796179999275612418
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++.+|++ ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+++.+.. |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCCC---CCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88277765675-47872397999---992779999998138999995899405514999999349999999998625997
Q 000522 1302 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1302 ~IpQdp~lF~g-TIR~NLdp~~~---~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ 1377 (1445)
+|||+|.+|+. |+++|+..+.. .+.+++.+. ..+..+.+||+...+.....||||||||++|||||..+|+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 98003353422209999999998739999999999-----9999987598556609954699999889999766404998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf 999846566889997999999998727--99479985169137865-19799993974831027999
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1378 ILiLDEaTS~lD~~T~~~Iq~~I~~~f--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
||+||||||+||+.+...+++.|++.. .++|+|+|+|+++.+.. ||||++|++|+++|.|+|.+
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~e 223 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 223 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 2430688666898999899999999987319807999489999998699999998999999859999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-42 Score=343.61 Aligned_cols=211 Identities=23% Similarity=0.352 Sum_probs=182.5
Q ss_pred EEEEEEEEEECCCCC--CCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999999998479999--6320013998589399998799998889999883479898737999796179999275---61
Q 000522 1223 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1297 (1445)
Q Consensus 1223 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~---lR 1297 (1445)
|+++|++.+|+.+.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 241888277765675-478723979---9999----27799999981389999958994055149999993499999999
Q 000522 1298 GRFAVVPQSPFLFEG-SLRDNLDPF---HMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1298 ~~i~~IpQdp~lF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LA 1369 (1445)
+++++|||+|-+|+. |+++|+... ...+ ++++.++|+++++ +.........||||||||++||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL---------~~~~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL---------GDKHDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHST---------TTTTSSCBSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---------CHHHHCCHHHCCHHHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699---------0355489434999999899986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCCC
Q ss_conf 98625997999846566889997999999998727--99479985169137865-197999939748310279999
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1370 RAlLr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~~ 1442 (1445)
|||..+|++|++||||++||+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|.+.
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 4010589868744655658988856799999999864697899983899999986999999979999998799999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.8e-42 Score=346.99 Aligned_cols=205 Identities=26% Similarity=0.406 Sum_probs=180.6
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99999999847999963200139985893999987999988899998834798987379997961799992756124188
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++|++.+|+. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+.+.+.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8277765675-478723979----99992779999998138999995899405514999999349999999998625997
Q 000522 1303 VPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1377 (1445)
Q Consensus 1303 IpQdp~lF~g-TIR~NLdp~----~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ 1377 (1445)
|||++.+|+. |++||+..+ +...++++.++++.+++ +.........||||||||++|||||+.+|+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI---------EHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC---------TTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC---------HHHHHCCHHHCCHHHHCCHHHHHHHHCCCC
T ss_conf 51211117466577888887764055389999999998256---------555758955479998401403043443677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf 999846566889997999999998727--99479985169137865-19799993974831027999
Q 000522 1378 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1378 ILiLDEaTS~lD~~T~~~Iq~~I~~~f--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
||+||||||+||+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|.+
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~e 214 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 1443478767998999999999999986479689997499999999699999997999999869999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.6e-42 Score=348.79 Aligned_cols=211 Identities=24% Similarity=0.322 Sum_probs=181.8
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 29999999984799996320013998589399998799998889999883479898737999796179999---275612
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1298 (1445)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~---~~~lR~ 1298 (1445)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHHCCCCC---CCCHHH----HHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 41888277765675-4787239799---999277----999999813899999589940551499999934999999999
Q 000522 1299 RFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1370 (1445)
Q Consensus 1299 ~i~~IpQdp~lF~g-TIR~NLdp~~---~~sd~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LAR 1370 (1445)
++++|||+|.+|+. |++||+...- ..+.++ +.++++.+ ||+.........||||||||++|||
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~---------gL~~~~~~~p~~LSGGqkQRvaiAR 153 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL---------DIHHVLNHFPRELSGAQQQRVALAR 153 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT---------TCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------CHHHHHHCCHHHCCHHHHHHHHHHH
T ss_conf 5147730433466665777766556761379999999999998665---------9176664895459999985899875
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf 8625997999846566889997999999998727--99479985169137865-19799993974831027999
Q 000522 1371 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1371 AlLr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
||..+|+||++|||||++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|.+
T Consensus 154 aL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~e 227 (242)
T d1oxxk2 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227 (242)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 77604661454478667998998899899999986359879999799999999699999998999999869999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.4e-42 Score=345.41 Aligned_cols=206 Identities=27% Similarity=0.381 Sum_probs=179.4
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99999999847999963200139985893999987999988899998834798987379997961799992756124188
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1302 (1445)
|+++||+++|++ ..+|+|+||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+...+. .|++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCCC---C----HHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8277765675-478723979999---9----2779999998138999995899405514999999349999999998625
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFHMN---D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1374 (1445)
Q Consensus 1303 IpQdp~lF~g-TIR~NLdp~~~~---s----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr 1374 (1445)
|||+|.+|+. |+++|+..+... + ++++.++++.+++.+ ........||||||||++|||||+.
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~---------~~~~~~~~LSGGqkQRvaiAraL~~ 147 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH---------LLDRKPKALSGGQRQRVAIGRTLVA 147 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC------------------------------CHHHHHHT
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH---------HHHCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 4334202643337889789998759988999999999997578865---------6648965699999999999999703
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf 997999846566889997999999998727--99479985169137865-19799993974831027999
Q 000522 1375 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1375 ~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
+|++|+|||||++||+.+...|++.|++.. .++|+|+|+|+++.+.. ||||++|++|++++.|+|.+
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~e 217 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 217 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 9988997588878898899899999999987429879999489999999699999997999999808999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=7.7e-42 Score=343.48 Aligned_cols=209 Identities=22% Similarity=0.317 Sum_probs=179.9
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 29999999984799996320013998589399998799998889999883479898737999796179999275----61
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----LR 1297 (1445)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~----lR 1297 (1445)
.|+++||+.+|.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCEEEECCCCCCCCC-CHHHHCCCC---CCCCHHH----HHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 241888277765675-478723979---9999277----99999981389999958994055149999993499999999
Q 000522 1298 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1369 (1445)
Q Consensus 1298 ~~i~~IpQdp~lF~g-TIR~NLdp~---~~~sd~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LA 1369 (1445)
+++++|||+|.+|+. |+++|+... ...+.++ +.+.++.+ |+..........||||||||++||
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~---------~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL---------GLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------TCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCHHHHCCCHHHCCHHHHHHHHHH
T ss_conf 55120022122231011667633068772999899999999999875---------996676299334999999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf 98625997999846566889997999999998727--99479985169137865-19799993974831027999
Q 000522 1370 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1370 RAlLr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
|||+.+|+||+|||||++||+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+++|.|+|++
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~e 226 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 998269988982588765698999899999999986369889999599999999699999998999999859999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.1e-41 Score=336.39 Aligned_cols=209 Identities=23% Similarity=0.348 Sum_probs=177.6
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 299999999847999963200139985893999987999988899998834798987379997961799992--------
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-------- 1293 (1445)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~-------- 1293 (1445)
.|+++|++++|.. ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCEEEECCCCCCCCC-CHHHHCCCC----CCCCHHH----HHHHHHHCCHHHHHHHCCCCHHHH-CCCCCC
Q ss_conf -----7561241888277765675-478723979----9999277----999999813899999589940551-499999
Q 000522 1294 -----RDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVK-ESGISF 1358 (1445)
Q Consensus 1294 -----~~lR~~i~~IpQdp~lF~g-TIR~NLdp~----~~~sd~e----i~~aL~~~~l~~~i~~lgLdt~v~-e~G~~L 1358 (1445)
...|+++++|+|+|.+|+. |+++|+..+ ...+..+ +.++++++ |+..... .....|
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~p~~L 150 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV---------GIDERAQGKYPVHL 150 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT---------TCCHHHHTSCGGGS
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCCHHHHCCCCCCC
T ss_conf 176799974544899833231411010213656578762999899999999999982---------99524430682205
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEE
Q ss_conf 9349999999998625997999846566889997999999998727-99479985169137865-197999939748310
Q 000522 1359 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHC 1436 (1445)
Q Consensus 1359 S~GQrQll~LARAlLr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~ 1436 (1445)
||||+||++|||||..+|++|++||||++||+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|+|+|.
T Consensus 151 SGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~ 230 (258)
T d1b0ua_ 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230 (258)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEE
T ss_conf 67788898999998439987885245556887888899876554103688338994899999986999999979999998
Q ss_pred CCCCC
Q ss_conf 27999
Q 000522 1437 GCAAA 1441 (1445)
Q Consensus 1437 g~p~~ 1441 (1445)
|+|.+
T Consensus 231 g~~~e 235 (258)
T d1b0ua_ 231 GDPEQ 235 (258)
T ss_dssp ECHHH
T ss_pred CCHHH
T ss_conf 49999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-40 Score=332.11 Aligned_cols=214 Identities=23% Similarity=0.380 Sum_probs=187.2
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 62999999998479999632001399858939999879999888999988347989873799979617999927561241
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1221 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1300 (1445)
|+|+++|++.+|.. ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+. .+.+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 888277765675-4787239799---999277999999813899999589940551499999934999999999862599
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1376 (1445)
Q Consensus 1301 ~~IpQdp~lF~g-TIR~NLdp~~---~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~ 1376 (1445)
+++||++.+|+. |++||+..+. ..+++++++..++. .+.++++....+.-..||+|||||+++|||++.+|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 6750015468786677888989986179989999999999-----98679788885045337998989999999986599
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCCC
Q ss_conf 7999846566889997999999998727-99479985169137865-197999939748310279999
Q 000522 1377 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAAP 1442 (1445)
Q Consensus 1377 ~ILiLDEaTS~lD~~T~~~Iq~~I~~~f-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~~ 1442 (1445)
+|++|||||++||+.+...+++.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|++.
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el 220 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 98873379889798999999999999996599899995989999996999999989999999289999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-40 Score=332.25 Aligned_cols=213 Identities=22% Similarity=0.337 Sum_probs=180.7
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-E
Q ss_conf 299999999847999963200139985893999987999988899998834798987379997961799992756124-1
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR-F 1300 (1445)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~-i 1300 (1445)
-++++|++.+|+. ..+|+||||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.++.+++ +
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCCC----------------CCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHH
Q ss_conf 888277765675-47872397999----------------9927799999981389999958994055149999993499
Q 000522 1301 AVVPQSPFLFEG-SLRDNLDPFHM----------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1363 (1445)
Q Consensus 1301 ~~IpQdp~lF~g-TIR~NLdp~~~----------------~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQr 1363 (1445)
+++||+|.+|+. |++||+..+.. ..+++..+ ...+.++.++++........+||||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFLKLSHLYDRKAGELSGGQM 156 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHCCCCHHCCCCHHHCCCHHH
T ss_conf 725776424788742321430133303450456654213532899999-----999998761963020595356991888
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf 9999999862599799984656688999799999999872-799479985169137865-19799993974831027999
Q 000522 1364 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1364 Qll~LARAlLr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~-f~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
||++|||||..+|++|+|||||++||+.+...+++.|++. -+++|||+|+|+++.+.. ||||+||++|++++.|+|.+
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e 236 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 89999999975927232439765699999999999999999789989999476999998699999996998999966899
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=5e-40 Score=329.15 Aligned_cols=214 Identities=25% Similarity=0.359 Sum_probs=180.1
Q ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 629999999984799996320013998589399998799998889999883479898737999796179999275612-4
Q 000522 1221 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG-R 1299 (1445)
Q Consensus 1221 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~-~ 1299 (1445)
-.++++|++++|+. ..+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCCC-CHHHHCCCCC--CCCHHHHHHHHHHCCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 1888277765675-4787239799--99927799999981389999958-994055149999993499999999986259
Q 000522 1300 FAVVPQSPFLFEG-SLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1300 i~~IpQdp~lF~g-TIR~NLdp~~--~~sd~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LS~GQrQll~LARAlLr~ 1375 (1445)
++++||++.+|+. |+++|+..+. ....++..+.++.. ...+ +++.........||||||||++|||||+.+
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 3556765545776369999998887327888999999999-----98741768887585433899999999999999829
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf 97999846566889997999999998727-99479985169137865-19799993974831027999
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1376 ~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
|++|+|||||++||+.+...+.+.|++.. +++|+|+++|+++.+.. ||||++|++|++++.|+|.+
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e 225 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 98740039886799999999999999999689989999588999999699999998999999848999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.7e-38 Score=313.48 Aligned_cols=206 Identities=24% Similarity=0.349 Sum_probs=172.3
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99999999847999963200139985893999987999988899998834798987379997961799992756124188
Q 000522 1223 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1302 (1445)
Q Consensus 1223 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1302 (1445)
+++ ++..+|..- .+ |+||++. +|.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++.. |++|++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8277765675-4787239799-9992779999998138999995899405514999999349999999998625997999
Q 000522 1303 VPQSPFLFEG-SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1380 (1445)
Q Consensus 1303 IpQdp~lF~g-TIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ILi 1380 (1445)
+||+|.+|+. |++||+...- ..+..+..+. ..+.++.+||+...+.....||||||||++||||++.+|+||+
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ill 149 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 52314435220155766653233677889999-----9999986383756657944489999899999877751677067
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf 8465668899979999999987279--9479985169137865-19799993974831027999
Q 000522 1381 LDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1381 LDEaTS~lD~~T~~~Iq~~I~~~f~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
||||||+||+.+...+++.|++..+ +.|+|+|+|+++.+.. ||||++|++|++++.|+|.+
T Consensus 150 lDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~e 213 (240)
T d2onka1 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 5286555887999999999999987439769998189999999699999998999999906999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.6e-37 Score=304.99 Aligned_cols=199 Identities=28% Similarity=0.395 Sum_probs=171.2
Q ss_pred EEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------EE
Q ss_conf 9998007861568863335540110268509979999958998378999998638468870899819-----------09
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1445)
Q Consensus 606 i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g-----------~i 674 (1445)
|+++|.+++|+. ... |+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++| .|
T Consensus 1 Iev~nv~k~yg~---~~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i 74 (232)
T d2awna2 1 VQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 74 (232)
T ss_dssp EEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCE
T ss_pred CEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEE
T ss_conf 999999999899---999---81117788699899999899982999999996587888888999999778886444322
Q ss_pred EEECCCCCCCCC-CHHHHHHCCCCC---C----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 998388878884-588997239999---9----34399999980652778611699721203798866248999999999
Q 000522 675 AYVPQVPWILSG-TIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 746 (1445)
Q Consensus 675 ayv~Q~pwl~n~-TIreNIlfg~~~---d----~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLAR 746 (1445)
+||+|+|-++.. |++|||.|+... + +++.+++++...|.+-.... ..+||||||||++|||
T Consensus 75 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAr 143 (232)
T d2awna2 75 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGR 143 (232)
T ss_dssp EEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHH
T ss_conf 23433420264333788978999875998899999999999757886566489-----------6569999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 981399999980887671899999999996419566--89659997258104641-798999949879995297688730
Q 000522 747 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 747 AvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTH~~~~l~~-aD~Iivl~~G~i~~~G~~~~l~~~ 823 (1445)
|+..+|++++||||+|+||+.+.+.|++. +.. +. .++|+|++||+++.... ||+|++|++|++++.|+++++...
T Consensus 144 aL~~~P~illlDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 144 TLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 97039988997588878898899899999-999-9874298799994899999996999999979999998089999738
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.7e-36 Score=301.19 Aligned_cols=200 Identities=26% Similarity=0.361 Sum_probs=171.1
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------E
Q ss_conf 49998007861568863335540110268509979999958998378999998638468870899819-----------0
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 673 (1445)
Q Consensus 605 ~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g-----------~ 673 (1445)
.|+++|.+++|+. ... |+|+||++++|++++|+||+|||||||++.|.|.+++++|+|.++| .
T Consensus 6 ~I~v~nlsk~yg~---~~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ 79 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79 (239)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCE
T ss_conf 4999879999999---999---8130678879989999999998299999999758999878799916413547700015
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9998388878884-58899723999---993----439999998065277861169972120379886624899999999
Q 000522 674 IAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 745 (1445)
Q Consensus 674 iayv~Q~pwl~n~-TIreNIlfg~~---~d~----~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLA 745 (1445)
|+||+|+|-++.. ||+||+.|+.. +++ ++-+++++.+.|++-. ......|||||||||+||
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHH
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHHHHHH
T ss_conf 899800335342220999999999873999999999999999875985566-----------099546999998899997
Q ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99813999999808876718999999999964195668--9659997258104641-79899994987999529768873
Q 000522 746 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 746 RAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~~-aD~Iivl~~G~i~~~G~~~~l~~ 822 (1445)
||+..+|+|++||||+|+||+.+.+.|++. +.. +.+ ++|+|++||+++.... ||+|++|++|+|++.|+++++..
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~l-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 664049982430688666898999899999-999-987319807999489999998699999998999999859999986
Q ss_pred C
Q ss_conf 0
Q 000522 823 S 823 (1445)
Q Consensus 823 ~ 823 (1445)
.
T Consensus 227 ~ 227 (239)
T d1v43a3 227 R 227 (239)
T ss_dssp C
T ss_pred C
T ss_conf 8
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-36 Score=302.60 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=173.1
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49998007861568863335540110268509979999958998378999998638468870899819------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------ 672 (1445)
.|+++|.+.+|+.++ .. +|+|+||++++|++++|+||+|||||||++.|.|-.++++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g~-~~---aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGK-VV---ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGGT-EE---EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEEEEEEECCCC-EE---EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCC
T ss_conf 899975799988999-89---98040789879989999989998099999999758688874599999995137311153
Q ss_pred ----EEEEECCCCCCCCC-CHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ----09998388878884-58899723999---993----4399999980652778611699721203798866248999
Q 000522 673 ----SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 740 (1445)
Q Consensus 673 ----~iayv~Q~pwl~n~-TIreNIlfg~~---~d~----~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKq 740 (1445)
+|+|++|+|-++.. ||+|||.|+.. .++ ++.+++++.+.|.+.....| ..|||||||
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQ 147 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQ 147 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHH
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHH
T ss_conf 120451477304334666657777665567613799999999999986659176664895-----------459999985
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCHHHH-HCCEEEEEECCEEEEECCH
Q ss_conf 9999999813999999808876718999999999964195668--965999725810464-1798999949879995297
Q 000522 741 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 817 (1445)
Q Consensus 741 RIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~G~~ 817 (1445)
||+||||+..+|+++++|||+|+||+.+.+.+++- +.. +.+ +.|+|++||+++.+. .||+|++|++|+|++.|++
T Consensus 148 RvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~-i~~-l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKE-VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHH-HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 89987577604661454478667998998899899-999-9863598799997999999996999999989999998699
Q ss_pred HHHHHC
Q ss_conf 688730
Q 000522 818 ADLAVS 823 (1445)
Q Consensus 818 ~~l~~~ 823 (1445)
+++...
T Consensus 226 ~el~~~ 231 (242)
T d1oxxk2 226 EDLYDN 231 (242)
T ss_dssp HHHHHS
T ss_pred HHHHHC
T ss_conf 999868
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-36 Score=301.81 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=171.7
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49998007861568863335540110268509979999958998378999998638468870899819------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------ 672 (1445)
.|+++|.+.+|+. .+. |+|+||++++|++++|+||+|||||||+++|.|...+++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred CEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHC
T ss_conf 1899869999899---999---8560668869989999999998099999999648788989899999980356644424
Q ss_pred -----EEEEECCCCCCCCC-CHHHHHHCCC---CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf -----09998388878884-5889972399---9993----439999998065277861169972120379886624899
Q 000522 673 -----SIAYVPQVPWILSG-TIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 739 (1445)
Q Consensus 673 -----~iayv~Q~pwl~n~-TIreNIlfg~---~~d~----~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQK 739 (1445)
.|+||+|+|-++.. ||+|||.|+. .+++ ++.+++++.+.|.+-... ....||||||
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqk 145 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQR 145 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHH
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHH
T ss_conf 53225512002212223101166763306877299989999999999987599667629-----------9334999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECC
Q ss_conf 99999999813999999808876718999999999964195668--9659997258104641-79899994987999529
Q 000522 740 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 740 qRIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~~-aD~Iivl~~G~i~~~G~ 816 (1445)
|||++|||+..+|++++||||+++||+.+...|++. +.. +.+ +.|+|++||+++.+.. ||+|++|++|+|++.|+
T Consensus 146 QRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKK-LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 999999998269988982588765698999899999-999-986369889999599999999699999998999999859
Q ss_pred HHHHHHC
Q ss_conf 7688730
Q 000522 817 SADLAVS 823 (1445)
Q Consensus 817 ~~~l~~~ 823 (1445)
++|+..+
T Consensus 224 ~~el~~~ 230 (240)
T d1g2912 224 PDEVYDK 230 (240)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
T ss_conf 9999828
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.2e-36 Score=302.24 Aligned_cols=198 Identities=25% Similarity=0.385 Sum_probs=171.6
Q ss_pred EEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------EE
Q ss_conf 9998007861568863335540110268509979999958998378999998638468870899819-----------09
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 674 (1445)
Q Consensus 606 i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g-----------~i 674 (1445)
++++|.+++|+. .. |+|+||++++|++++|+||+|||||||+++|.|-+++++|+|.++| .|
T Consensus 2 i~v~nlsk~y~~----~a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~i 74 (229)
T d3d31a2 2 IEIESLSRKWKN----FS---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (229)
T ss_dssp EEEEEEEEECSS----CE---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred EEEEEEEEEECC----EE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCC
T ss_conf 899989999499----78---84337898799899999899982999999996476888788999567346521657405
Q ss_pred EEECCCCCCCCC-CHHHHHHCCC----CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 998388878884-5889972399----99934399999980652778611699721203798866248999999999981
Q 000522 675 AYVPQVPWILSG-TIRDNILFGK----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 749 (1445)
Q Consensus 675 ayv~Q~pwl~n~-TIreNIlfg~----~~d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY 749 (1445)
||++|+|-++.. ||+||+.|+. .-++++..++++...+.+..+ .....|||||||||+||||+.
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHH
T ss_conf 615121111746657788888776405538999999999825655575-----------895547999840140304344
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 399999980887671899999999996419566--89659997258104641-798999949879995297688730
Q 000522 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 750 ~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTH~~~~l~~-aD~Iivl~~G~i~~~G~~~~l~~~ 823 (1445)
.+|+++|||||+|+||+.+.+.|++. +.. +. .+.|+|++||+++.... ||+|++|++|++++.|+++++...
T Consensus 144 ~~P~iLllDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 144 TNPKILLLDEPLSALDPRTQENAREM-LSV-LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHH-HHH-HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 36771443478767998999999999-999-9864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.4e-36 Score=297.90 Aligned_cols=202 Identities=28% Similarity=0.352 Sum_probs=170.9
Q ss_pred EEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9998007861568863335540110268509979999958998378999998638468870899819-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------- 672 (1445)
++++|.+.+|+.+.. ...+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~--~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (240)
T d3dhwc1 2 IKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79 (240)
T ss_dssp EEEEEEEEEEECSSC--EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred EEEEEEEEEECCCCE--EEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHH
T ss_conf 799827999699981--489861505788699799998999898889999875886366773288676852087555115
Q ss_pred ---EEEEECCCCCCCCC-CHHHHHHCC-----CCCC--HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ---09998388878884-588997239-----9999--343999999806527786116997212037988662489999
Q 000522 673 ---SIAYVPQVPWILSG-TIRDNILFG-----KNYD--PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 741 (1445)
Q Consensus 673 ---~iayv~Q~pwl~n~-TIreNIlfg-----~~~d--~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqR 741 (1445)
+|+|++|+|-+++. ||+|||.++ .+-+ +++..+.++.+.|.+-.. .....||||||||
T Consensus 80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-----------~~~~~LSGG~~QR 148 (240)
T d3dhwc1 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQR 148 (240)
T ss_dssp HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-----------SCBSCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-----------CCHHHCCHHHHHH
T ss_conf 54166430225222799649999999999849998999999999999769903554-----------8943499999989
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHH
Q ss_conf 999999813999999808876718999999999964195668--9659997258104641-7989999498799952976
Q 000522 742 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 818 (1445)
Q Consensus 742 IaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~~-aD~Iivl~~G~i~~~G~~~ 818 (1445)
|+||||+..+|+++++|||+++||+.+.+.|++. +.. +.+ +.|+|++||+++.+.. ||+|++|++|+|++.|+++
T Consensus 149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKD-INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHH-HHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETT
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 9986401058986874465565898885679999-999-98646978999838999999869999999799999987999
Q ss_pred HHHH
Q ss_conf 8873
Q 000522 819 DLAV 822 (1445)
Q Consensus 819 ~l~~ 822 (1445)
++..
T Consensus 227 ei~~ 230 (240)
T d3dhwc1 227 EVFS 230 (240)
T ss_dssp TTTC
T ss_pred HHHH
T ss_conf 9972
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-36 Score=299.55 Aligned_cols=198 Identities=24% Similarity=0.329 Sum_probs=162.0
Q ss_pred EEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-------------
Q ss_conf 9998007861568863335540110268509979999958998378999998638468870899819-------------
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 672 (1445)
Q Consensus 606 i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------- 672 (1445)
++++|.+++|+... ....+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~--~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCH
T ss_conf 89990799948998--2089871337788499799998899998216557506887777662699999857688555123
Q ss_pred ----EEEEECCCCCCCCC-CHHHHHHCCCC------CC-HHHHHHH---HHHHCCHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf ----09998388878884-58899723999------99-3439999---9980652778611699721203798866248
Q 000522 673 ----SIAYVPQVPWILSG-TIRDNILFGKN------YD-PQSYSET---LKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737 (1445)
Q Consensus 673 ----~iayv~Q~pwl~n~-TIreNIlfg~~------~d-~~~y~~v---i~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGG 737 (1445)
.|+|++|+|-++.. ||+||+.++.. ++ +++-+++ ++...|.+.+. ...-.+||||
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~p~~LSGG 149 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA----------NHKPNQLSGG 149 (230)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGT----------TCCGGGSCHH
T ss_pred HHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHH----------CCCHHHCCHH
T ss_conf 125557788041241768668887757888722478999999999999887624234553----------4880238999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEEC
Q ss_conf 9999999999813999999808876718999999999964195668--96599972581046417989999498799952
Q 000522 738 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 815 (1445)
Q Consensus 738 QKqRIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~G 815 (1445)
|||||+||||+..+|++++||||+|+||+.+++.|++- +.. +.+ ++|+|++||+++....||+|++|++|+|++.|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKK-LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEEC
T ss_conf 99999987565227888994687654698999999999-999-9984399999987888999869989999899999952
Q ss_pred CH
Q ss_conf 97
Q 000522 816 SS 817 (1445)
Q Consensus 816 ~~ 817 (1445)
+.
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred CC
T ss_conf 57
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.7e-35 Score=290.56 Aligned_cols=201 Identities=24% Similarity=0.305 Sum_probs=171.5
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49998007861568863335540110268509979999958998378999998638468870899819------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------ 672 (1445)
.++++|.+++|+. .+. |+|+||++++|++++|+||+|||||||+++|.|-.++++|+|.++|
T Consensus 2 ~Lev~nl~k~yg~---~~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHH
T ss_conf 6999978999899---998---8150668869979999989998299999999747667899779999993367752000
Q ss_pred --------------EEEEECCCCCCCCC-CHHHHHHCC----CCCCH----HHHHHHHHHHCCHHHHH-HCCCCCCCCCC
Q ss_conf --------------09998388878884-588997239----99993----43999999806527786-11699721203
Q 000522 673 --------------SIAYVPQVPWILSG-TIRDNILFG----KNYDP----QSYSETLKACTLDVDIS-LMVGGDMAYIG 728 (1445)
Q Consensus 673 --------------~iayv~Q~pwl~n~-TIreNIlfg----~~~d~----~~y~~vi~ac~L~~Dl~-~lp~GD~T~iG 728 (1445)
.|+|++|+|-+++. |++|||.++ ..+++ ++..++++.+.|.+... ..|
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-------- 147 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-------- 147 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG--------
T ss_pred CCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC--------
T ss_conf 023517679997454489983323141101021365657876299989999999999998299524430682--------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH-CCEEEEEE
Q ss_conf 79886624899999999998139999998088767189999999999641956689659997258104641-79899994
Q 000522 729 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD 807 (1445)
Q Consensus 729 e~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~-aD~Iivl~ 807 (1445)
..|||||||||+||||+..+|++++||||+++||+.+.+.|++- +..-.-+++|+|++||+++.+.. ||+|++|+
T Consensus 148 ---~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l-l~~l~~~g~til~vtHdl~~~~~~adri~vm~ 223 (258)
T d1b0ua_ 148 ---VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 223 (258)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHCCCCCCEEEEECCHHHHHHHCCEEEEEE
T ss_conf ---20567788898999998439987885245556887888899876-55410368833899489999998699999997
Q ss_pred CCEEEEECCHHHHHHC
Q ss_conf 9879995297688730
Q 000522 808 KGQVKWIGSSADLAVS 823 (1445)
Q Consensus 808 ~G~i~~~G~~~~l~~~ 823 (1445)
+|+|++.|+++|+..+
T Consensus 224 ~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 224 QGKIEEEGDPEQVFGN 239 (258)
T ss_dssp TTEEEEEECHHHHHHS
T ss_pred CCEEEEECCHHHHHHC
T ss_conf 9999998499999838
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=8.1e-35 Score=287.90 Aligned_cols=207 Identities=24% Similarity=0.358 Sum_probs=167.9
Q ss_pred CCCEEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC---------
Q ss_conf 98449998007861568863335540110268509979999958998378999998638468870899819---------
Q 000522 602 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 672 (1445)
Q Consensus 602 ~~~~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g--------- 672 (1445)
++..++++|.+++|+. ... |+|+||++++|++++++||+|||||||+++|.|.+++++|+|.++|
T Consensus 3 sd~~Lev~~l~k~yg~---~~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CCEEEEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
T ss_conf 5607999618999899---888---8302578889979999999998599999999678888803898424434466088
Q ss_pred -----EEEEECCCCCCCCC-CHHHHHHCCCC--CCHHHHHHHH-HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -----09998388878884-58899723999--9934399999-980652778611699721203798866248999999
Q 000522 673 -----SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETL-KACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 673 -----~iayv~Q~pwl~n~-TIreNIlfg~~--~d~~~y~~vi-~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIa 743 (1445)
.++|++|++-++.. |++||+.++.. .+.+..++.+ ++..+...+... ......+||||||||++
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH-------HHCCHHHCCHHHHHHHH
T ss_conf 88874235567655457763699999988873278889999999999874176888-------75854338999999999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHH-HCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999813999999808876718999999999964195668965999725810464-179899994987999529768873
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 744 LARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~G~~~~l~~ 822 (1445)
+|||+..+|++++||||+++||+...+.|++- +..-..+++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEV-IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 99999829987400398867999999999999-99999689989999588999999699999998999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-34 Score=286.67 Aligned_cols=200 Identities=24% Similarity=0.304 Sum_probs=164.0
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49998007861568863335540110268509979999958998378999998638468870899819------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------ 672 (1445)
.++++|.+.+|+. .+. |+|+||++++|++++++||+|||||||+++|.|.+++.+|+|.++|
T Consensus 4 iL~v~nlsk~yg~---~~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 77 (254)
T ss_dssp EEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHH
T ss_conf 6999778999799---688---7121799889979999999998499999999779768873799999966405699999
Q ss_pred --EEEEECCCCCCCCC-CHHHHHHCCCCC-----------------CHHH---HHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf --09998388878884-588997239999-----------------9343---999999806527786116997212037
Q 000522 673 --SIAYVPQVPWILSG-TIRDNILFGKNY-----------------DPQS---YSETLKACTLDVDISLMVGGDMAYIGE 729 (1445)
Q Consensus 673 --~iayv~Q~pwl~n~-TIreNIlfg~~~-----------------d~~~---y~~vi~ac~L~~Dl~~lp~GD~T~iGe 729 (1445)
.|+|++|+|-++.. |++|||.+|... +++. -.++++...+... ...
T Consensus 78 ~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~ 146 (254)
T d1g6ha_ 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDR 146 (254)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTS
T ss_pred HHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-----------CCC
T ss_conf 833872577642478874232143013330345045665421353289999999999876196302-----------059
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHH-HCCEEEEEEC
Q ss_conf 988662489999999999813999999808876718999999999964195668965999725810464-1798999949
Q 000522 730 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK 808 (1445)
Q Consensus 730 ~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~-~aD~Iivl~~ 808 (1445)
...+|||||||||++|||+..+|++++||||+++||+...+.|++. +..-.-+++|+|++||+++.+. .||+|++|++
T Consensus 147 ~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 147 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred CHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 5356991888899999999759272324397656999999999999-999997899899994769999986999999969
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 87999529768873
Q 000522 809 GQVKWIGSSADLAV 822 (1445)
Q Consensus 809 G~i~~~G~~~~l~~ 822 (1445)
|+++..|+++|+.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEECHHHHHH
T ss_conf 98999966899865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-35 Score=292.56 Aligned_cols=204 Identities=22% Similarity=0.289 Sum_probs=173.5
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 29999999984799996320013998589399998799998889999883479898737999796179999275612418
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1301 (1445)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCCCCC--CCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC----
Q ss_conf 88277765-67547872397999--992779999998138999995899405514999999349999999998625----
Q 000522 1302 VVPQSPFL-FEGSLRDNLDPFHM--NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---- 1374 (1445)
Q Consensus 1302 ~IpQdp~l-F~gTIR~NLdp~~~--~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr---- 1374 (1445)
+++|+... |..++.+|+..+.. ...+.+.++++. ++++..++....+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~ 146 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 146 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHH---------TTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH---------CCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 4512135774420988764100146689999999986---------5987676768445699889999999999851713
Q ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHH-CCEEEEEECCEEEEECCCCC
Q ss_conf ---99799984656688999799999999872-799479985169137865-19799993974831027999
Q 000522 1375 ---SSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLPHCGCAAA 1441 (1445)
Q Consensus 1375 ---~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~-f~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ivE~g~p~~ 1441 (1445)
+|+|++|||||++||..+...+.+.|++. -.++|||+++|+++.+.+ ||||++|++|++++.|+|.+
T Consensus 147 ~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~e 218 (231)
T d1l7vc_ 147 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 218 (231)
T ss_dssp TCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 389988999718777789899999999999998679999999677999999799999997998999889999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.3e-34 Score=281.45 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=168.7
Q ss_pred CEEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------
Q ss_conf 449998007861568863335540110268509979999958998378999998638468870899819-----------
Q 000522 604 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 672 (1445)
Q Consensus 604 ~~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g----------- 672 (1445)
.+|+++|.+.+|.. .++ |+|+||++++|++++|+||+|||||||++.|.|.++|.+|+|.++|
T Consensus 1 gaI~v~nl~k~yg~---~~v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred CCEEEEEEEEEECC---EEE---ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 97899958999999---999---806256884897999999999999999999966988788879998672446839887
Q ss_pred -EEEEECCCCCCCCC-CHHHHHHCCC---CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -09998388878884-5889972399---99934----399999980652778611699721203798866248999999
Q 000522 673 -SIAYVPQVPWILSG-TIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 743 (1445)
Q Consensus 673 -~iayv~Q~pwl~n~-TIreNIlfg~---~~d~~----~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIa 743 (1445)
.++||||++.++.. |++||+.|.. ..+.+ ..+++++.+.|.+.. ..+..+||||||||++
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lSgG~~qrv~ 143 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLL 143 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHCCHHHHHHHH
T ss_conf 21867500154687866778889899861799899999999999867978888-----------5045337998989999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99998139999998088767189999999999641956689659997258104641-79899994987999529768873
Q 000522 744 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 822 (1445)
Q Consensus 744 LARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~-aD~Iivl~~G~i~~~G~~~~l~~ 822 (1445)
+|||+.++|++++||||+++||+...+.|++- +..-...++|+|++||+++.+.. ||+|++|++|++...|+++++..
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~-i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKI-LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998659998873379889798999999999-99999659989999598999999699999998999999928999986
Q ss_pred C
Q ss_conf 0
Q 000522 823 S 823 (1445)
Q Consensus 823 ~ 823 (1445)
.
T Consensus 223 ~ 223 (238)
T d1vpla_ 223 R 223 (238)
T ss_dssp H
T ss_pred C
T ss_conf 5
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.6e-34 Score=282.80 Aligned_cols=182 Identities=27% Similarity=0.382 Sum_probs=154.8
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC-----------EEEEECCCCCCCCC-CHHHHHHC
Q ss_conf 0110268509979999958998378999998638468870899819-----------09998388878884-58899723
Q 000522 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIAYVPQVPWILSG-TIRDNILF 694 (1445)
Q Consensus 627 L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g-----------~iayv~Q~pwl~n~-TIreNIlf 694 (1445)
+ |+||+++ +++++++||+|||||||++.|.|.+++++|+|.++| .|+|++|+|-++.. ||+|||.|
T Consensus 16 ~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 16 L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9-9999749-9799999799980999999997399989628999999988699899285225231443522015576665
Q ss_pred CCC-CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH
Q ss_conf 999-993----439999998065277861169972120379886624899999999998139999998088767189999
Q 000522 695 GKN-YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 769 (1445)
Q Consensus 695 g~~-~d~----~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaLD~~t~ 769 (1445)
+.. +++ ++.+++++.+.|.+.. ......|||||||||+||||+..+|++++||||+|+||+.+.
T Consensus 94 ~l~~~~~~~~~~~v~~~l~~~gl~~~~-----------~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~ 162 (240)
T d2onka1 94 GLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf 323367788999999999863837566-----------579444899998999998777516770675286555887999
Q ss_pred HHHHHHHHCCCCCC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 99999964195668--9659997258104641-798999949879995297688730
Q 000522 770 RWILSNAIMGPHML--QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 823 (1445)
Q Consensus 770 ~~I~~~~i~g~ll~--~kTvIlvTH~~~~l~~-aD~Iivl~~G~i~~~G~~~~l~~~ 823 (1445)
+.+++. +.. +.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 163 ~~i~~~-i~~-l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 163 GVLMEE-LRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHH-HHH-HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 999999-999-9874397699981899999996999999989999999069998329
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2e-33 Score=276.90 Aligned_cols=190 Identities=23% Similarity=0.355 Sum_probs=157.5
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 29999999984799996320013998589399998799998889999883479898737999796179999275612418
Q 000522 1222 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1301 (1445)
Q Consensus 1222 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1301 (1445)
.|+++|++++|+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++. ..|.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred EEEEEEEEEEEC---CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCEE
T ss_conf 599998999939---92884208898599899999999971999999996620567788999989626-----7367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 88277765675-47872397----9-999927799999981389999958994055149999993499999999986259
Q 000522 1302 VVPQSPFLFEG-SLRDNLDP----F-HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1375 (1445)
Q Consensus 1302 ~IpQdp~lF~g-TIR~NLdp----~-~~~sd~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~ 1375 (1445)
++||++.++.. |+++|+.. + ...+++++.++++..++. +++..++ .||+|||||+++|||++.+
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~----~LSgG~~qrv~ia~al~~~ 143 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL------DLKKKLG----ELSQGTIRRVQLASTLLVN 143 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC------CTTSBGG----GSCHHHHHHHHHHHHTTSC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC------CCCCCCC----CCCCCHHHHHHHHHHHHCC
T ss_conf 99501357888289999999997548863799999999874885------6301268----6897188889999988649
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEEC
Q ss_conf 9799984656688999799999999872799479985169137865197999939
Q 000522 1376 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1430 (1445)
Q Consensus 1376 ~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f~~~TvI~IaHrl~ti~~~D~I~vl~~ 1430 (1445)
|+++||||||++||.++...+.+.|.+..+++++++|+|+- .+.-||.+.+|++
T Consensus 144 ~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 98999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.1e-30 Score=255.11 Aligned_cols=195 Identities=21% Similarity=0.311 Sum_probs=159.8
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC------------
Q ss_conf 49998007861568863335540110268509979999958998378999998638468870899819------------
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 672 (1445)
Q Consensus 605 ~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g------------ 672 (1445)
.++++|.+.+ ..|+++||+|++|++++|+||+|||||||+++|.|.. +.+|+|.++|
T Consensus 3 il~~~dv~~~----------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~ 71 (231)
T d1l7vc_ 3 VMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 71 (231)
T ss_dssp EEEEEEECCT----------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHH
T ss_pred EEEEECCCCC----------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHH
T ss_conf 9999874157----------1555888899489899999899980999999994887-9955999999999869989998
Q ss_pred -EEEEECCCCCC-CCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -09998388878-88458899723999--993439999998065277861169972120379886624899999999998
Q 000522 673 -SIAYVPQVPWI-LSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 748 (1445)
Q Consensus 673 -~iayv~Q~pwl-~n~TIreNIlfg~~--~d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAv 748 (1445)
..+|.+|+.-. +..++.+|+.++.. ..+++.+++++.+.|++. .+.+..+||||||||+++|||+
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al 140 (231)
T d1l7vc_ 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVV 140 (231)
T ss_dssp HHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHH
T ss_conf 64024512135774420988764100146689999999986598767-----------6768445699889999999999
Q ss_pred CC-------CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHH-HHCCEEEEEECCEEEEECCHHHH
Q ss_conf 13-------99999980887671899999999996419566896599972581046-41798999949879995297688
Q 000522 749 YH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 820 (1445)
Q Consensus 749 Y~-------~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l-~~aD~Iivl~~G~i~~~G~~~~l 820 (1445)
.+ +|++++||||+++||+...+.+++- +..-..+++|+|++||+++.+ ..||+|++|++|++++.|+.+|+
T Consensus 141 ~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~-i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev 219 (231)
T d1l7vc_ 141 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI-LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219 (231)
T ss_dssp HHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHH-HHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHH
T ss_pred HHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 8517133899889997187777898999999999-999986799999996779999997999999979989998899998
Q ss_pred HH
Q ss_conf 73
Q 000522 821 AV 822 (1445)
Q Consensus 821 ~~ 822 (1445)
..
T Consensus 220 ~~ 221 (231)
T d1l7vc_ 220 LT 221 (231)
T ss_dssp SC
T ss_pred HC
T ss_conf 18
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=1.8e-29 Score=245.59 Aligned_cols=182 Identities=23% Similarity=0.376 Sum_probs=145.9
Q ss_pred EEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC--------EEEE
Q ss_conf 49998007861568863335540110268509979999958998378999998638468870899819--------0999
Q 000522 605 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 676 (1445)
Q Consensus 605 ~i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g--------~iay 676 (1445)
.++++|.+++|+ ++. |+|+||++++|++++|+||+|||||||++.|.|.++|++|+|.++| .++|
T Consensus 2 ~lev~~ls~~y~----~~v---l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS----SEE---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred EEEEEEEEEEEC----CEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEE
T ss_conf 599998999939----928---8420889859989999999997199999999662056778899998962673670899
Q ss_pred ECCCCCCCCC-CHHHHHHC-----CCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8388878884-58899723-----99999343999999806527786116997212037988662489999999999813
Q 000522 677 VPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 750 (1445)
Q Consensus 677 v~Q~pwl~n~-TIreNIlf-----g~~~d~~~y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~ 750 (1445)
+||++.++.. |++||+.+ +...+++...+.++...+. |+ .++-.+||||||||+++|||+.+
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----------~~~~~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-----------KKKLGELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC-CC-----------CCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9501357888289999999997548863799999999874885-63-----------01268689718888999998864
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCEEEEEEC
Q ss_conf 9999998088767189999999999641956689659997258104641798999949
Q 000522 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 808 (1445)
Q Consensus 751 ~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Iivl~~ 808 (1445)
+|++++||||+++||+.+.+.+++. +.. +.+++++++++|+ +.+..||.+.+|.+
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~-l~~-~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKS-ILE-ILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHH-HHH-HHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 9989998686201699999999999-999-9867999999991-62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=2.6e-20 Score=173.02 Aligned_cols=305 Identities=10% Similarity=0.060 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997596999999999999999999999999999852588824799999999999999999999999999999999999
Q 000522 273 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 352 (1445)
Q Consensus 273 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~l~~~l~~~~~~~a~~~~~~~~~~~r~~~~~r~ 352 (1445)
..+.|++.++...+..++..++....|++++.+++..-.+.+...-+.+++.++.+.++..++.....+...+.+.++..
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 89 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVM 89 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999999999874468778999999999999997645335466544343100011
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998339932237798669999999669999999999-999997999999989998567679999999999999
Q 000522 353 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILL 431 (1445)
Q Consensus 353 ~L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~~i~~~~~~-~~~~w~~pi~i~i~~~lL~~~lG~a~l~g~~v~~~~ 431 (1445)
.+...+|+|.++.+....++.+.|++++.++.|++.+.+.... ........+.++.+++.++..-...++..++++++.
T Consensus 90 ~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~ 169 (319)
T d3b60a2 90 TMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIV 169 (319)
T ss_dssp HHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 00047777650101111023332211111212121000011111200112334456688888765200210256689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999954999998292699999999999999999999999999999999999
Q 000522 432 IPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 511 (1445)
Q Consensus 432 ~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~~e~L~~ik~IK~~~we~~~~~~I~~~R~~El~~~~~~~~l~~~~~~~~~~~ 511 (1445)
..+..+..++..+.+++..+..++..+...|.++|++.+|.+++|+.+.++.++..++..+...+...............
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
T d3b60a2 170 SIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 249 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99887666687787898876445677887776248723531110102456666653135677888887777406401000
Q ss_pred HHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999--9999999880998787689999999999999998999999999999999999999728987
Q 000522 512 PTLFS--LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 577 (1445)
Q Consensus 512 p~~~~--~~tf~~y~~~~~~L~~~~~Ft~lsl~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 577 (1445)
..+.. +..++.|....+.++++..++.+.+...+..|+..++..++.+.++.+|.+|+.++|+.|+
T Consensus 250 ~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 250 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 00023799999999998099789999999999999999999999999999999999999999966998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=7.9e-20 Score=169.25 Aligned_cols=316 Identities=15% Similarity=0.173 Sum_probs=237.7
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 566899---87412278999999999999999843566766421145787887651478999999999999999999999
Q 000522 886 LTVYKN---YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFS 962 (1445)
Q Consensus 886 ~~~y~~---y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 962 (1445)
|++++. |.+...+.... .+++.++..+.....++.++..+|.............+.+++.++.++..++..++.+.
T Consensus 1 Wk~~krl~~~~~~~k~~l~~-~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIV-AGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96899999999999999999-99999999999999999999999987446877899999999999999764533546654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999988549644435677337999998129787533579999999999867886646987878999
Q 000522 963 FAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL 1042 (1445)
Q Consensus 963 ~~~~~~~~s~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~ 1042 (1445)
....+.+...++++++++++++.|+.+|++.+.|++++|+++|++.+.+.+...+...+..+...++.++.+....|.++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 159 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 159 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 43431000110004777765010111102333221111121212100001111120011233445668888876520021
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999987520613757998433389998509389999999999999999899999998
Q 000522 1043 LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1122 (1445)
Q Consensus 1043 ~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~etl~Gl~tIRaf~~e~~~~~~~~~~ld~~~~~~~~~~~~~ 1122 (1445)
++++...+++..+...+.+..+...+...+..+...+.+.|.++|+.+||+|++|+.+.+++.+..+...+........+
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (319)
T d3b60a2 160 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02566899999988766668778789887644567788777624872353111010245666665313567788888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 56899999999999999999999841588877762099999999999999999999999999999987899999984138
Q 000522 1123 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1202 (1445)
Q Consensus 1123 ~wl~~~l~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~~~ 1202 (1445)
.+......++..+...++... +.. ....+..+.|.+...+.+...+..++..+...+.++.++.+|.+|+.++.|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~---g~~-~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 240 SISDPIIQLIASLALAFVLYA---ASF-PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHS-SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHHHHHHHH---HHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 740640100000023799999---999-9980997899999999999999999999999999999999999999999669
Q ss_pred CCCC
Q ss_conf 7000
Q 000522 1203 PQEE 1206 (1445)
Q Consensus 1203 ~~E~ 1206 (1445)
|+|+
T Consensus 316 ~~E~ 319 (319)
T d3b60a2 316 EQEK 319 (319)
T ss_dssp CCSC
T ss_pred CCCC
T ss_conf 9899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.91 E-value=1e-19 Score=168.44 Aligned_cols=306 Identities=13% Similarity=0.121 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999975969999999999999999999999999998525888--24---7--999999999999999999999999999
Q 000522 272 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HL---D--GYVLAIALGLTSILKSFFDTQYSFHLS 344 (1445)
Q Consensus 272 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~--~~---~--g~~l~~~l~~~~~~~a~~~~~~~~~~~ 344 (1445)
...+.|++.++...++.++..++....|++++.+++.+.++.. .. . ...++.++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999833993223779866999999966999999999-99999979999999899985676799999
Q 000522 345 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVS 423 (1445)
Q Consensus 345 r~~~~~r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~~i~~~~~-~~~~~w~~pi~i~i~~~lL~~~lG~a~l~ 423 (1445)
+.+.+++..+...+|+|.++++....++.++|++++.++.|++.+.+... .+...+...+.+++++..+...-...++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999549999982926999999999999999999999999999
Q 000522 424 GLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 503 (1445)
Q Consensus 424 g~~v~~~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~~e~L~~ik~IK~~~we~~~~~~I~~~R~~El~~~~~~~~l~~~ 503 (1445)
.++++++...+...+.++..+..++..+..++..+.+.|.++|+|.||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999899999--999999880998787689999999999999998999999999999999999999728987
Q 000522 504 CVFFWATTPTLFSL--FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 577 (1445)
Q Consensus 504 ~~~~~~~~p~~~~~--~tf~~y~~~~~~L~~~~~Ft~lsl~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 577 (1445)
..........+... ..++.+....+.++.+..++.+.++..+..|+..+...++.+.++.+|++||.++|+.|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=1.2e-19 Score=167.77 Aligned_cols=311 Identities=15% Similarity=0.220 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf 8998741227899999999999999984356676642114578788765--14789-----9999999999999999999
Q 000522 889 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS--TSFYL-----VVLCIFCMFNSFLTLVRAF 961 (1445)
Q Consensus 889 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~--~~~~l-----~~~~~l~~~~~~~~~~~~~ 961 (1445)
+..|++...+.....+ ++.++..+.....++.++..+|.......... ...++ ..+.++.+...++.....+
T Consensus 5 l~~~~k~~k~~~~~~~-~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (323)
T d2hyda2 5 YLQFVKPYKYRIFATI-IVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQY 83 (323)
T ss_dssp HHHHHGGGHHHHHHHH-HHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999-999999999999999999999998626774215568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998854964443567733799999812978753357999999999986788664698787899
Q 000522 962 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF 1041 (1445)
Q Consensus 962 ~~~~~~~~~s~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~ 1041 (1445)
.....+.+...++++++++++++.|++||++.+.|++++|+++|++.+++.....+...+..+...++.++.+.+..|.+
T Consensus 84 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 163 (323)
T d2hyda2 84 LAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKL 163 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999985567788887665402332100012221100011113321001113454201114665334654400001468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998752061375799843338999850938999999999999999989999999
Q 000522 1042 LLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121 (1445)
Q Consensus 1042 ~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~etl~Gl~tIRaf~~e~~~~~~~~~~ld~~~~~~~~~~~~ 1121 (1445)
+++.++...++..+...+.+..++..+......+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+........
T Consensus 164 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~ 243 (323)
T d2hyda2 164 TLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243 (323)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 88999988777777764123332026778989999997878875597023467641110023302231111015677652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85689999999999999999999-98415888777620999999999999999999999999999999878999999841
Q 000522 1122 SLWLSLRLQLLAAFIISFIATMA-VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1200 (1445)
Q Consensus 1122 ~~wl~~~l~~i~~~~~~~~~~~~-v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~ 1200 (1445)
+.+......++..+...++.... .... .+..+.|.+...+.+...+..++..+...+.++.....|.+|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elL 318 (323)
T d2hyda2 244 NAYSFAAINTVTDIGPIIVIGVGAYLAI-----SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0000111110120558999999999998-----49988999999999999999999999999999999999999999997
Q ss_pred CCCCC
Q ss_conf 38700
Q 000522 1201 DVPQE 1205 (1445)
Q Consensus 1201 ~~~~E 1205 (1445)
|.++|
T Consensus 319 d~e~e 323 (323)
T d2hyda2 319 DEDYD 323 (323)
T ss_dssp TCCCS
T ss_pred CCCCC
T ss_conf 79998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.44 E-value=6.9e-15 Score=130.14 Aligned_cols=160 Identities=11% Similarity=0.005 Sum_probs=110.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998799998889999883479898737999796179999275612418882777656754787239799999277999
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1331 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~gTIR~NLdp~~~~sd~ei~~ 1331 (1445)
||+|+|++|||||||++.+.+.+++..|.+.+++.+....+.+.........++.+.++..+...+....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999813899999589940551499999934999999999862599799984656688--999799999999872799479
Q 000522 1332 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV--DAQTASILQNAISSECKGMTV 1409 (1445)
Q Consensus 1332 aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ILiLDEaTS~l--D~~T~~~Iq~~I~~~f~~~Tv 1409 (1445)
+.+...- .+++|++|+.++++++.++|+++++||++... +.+....+.+.+++ .++|+
T Consensus 74 --------------~~~~~~~----~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~~i 133 (178)
T d1ye8a1 74 --------------GVNVQYF----EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNV 133 (178)
T ss_dssp --------------EECHHHH----HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEE
T ss_pred --------------HCCCCHH----HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCCEE
T ss_conf --------------0376256----653201378999999740997423027773100457999999987505--79789
Q ss_pred EEECCCHHHHHHCCEEEEEECCEEEEECCC
Q ss_conf 985169137865197999939748310279
Q 000522 1410 ITIAHRISTVLNMDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1410 I~IaHrl~ti~~~D~I~vl~~G~ivE~g~p 1439 (1445)
|.++|+......+|++..+++|++++.++.
T Consensus 134 l~~~h~~~~~~~~~~i~~~~~~~i~~v~~~ 163 (178)
T d1ye8a1 134 VATIPIRDVHPLVKEIRRLPGAVLIELTPE 163 (178)
T ss_dssp EEECCSSCCSHHHHHHHTCTTCEEEECCTT
T ss_pred EEEECCHHHHHHHCEEEEEECCEEEEECCC
T ss_conf 999744778986365998719999998996
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.16 E-value=5e-12 Score=107.48 Aligned_cols=144 Identities=9% Similarity=0.020 Sum_probs=96.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC--EEEEECCC-----------CCCCCCCHHHHHHCCCCCCHHHHHHH
Q ss_conf 999958998378999998638468870899819--09998388-----------87888458899723999993439999
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQV-----------PWILSGTIRDNILFGKNYDPQSYSET 706 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g--~iayv~Q~-----------pwl~n~TIreNIlfg~~~d~~~y~~v 706 (1445)
++|+||+|||||||++.|+|++++..|.+...+ ..++..|. +.+.+.+..++..+++
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 72 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS---------- 72 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT----------
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_conf 9999899938999999998148888646998771328888765311233667778875411345544302----------
Q ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHHHHHCCCCC-C
Q ss_conf 9980652778611699721203798866248999999999981399999980887671--899999999996419566-8
Q 000522 707 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV--DAQVARWILSNAIMGPHM-L 783 (1445)
Q Consensus 707 i~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaL--D~~t~~~I~~~~i~g~ll-~ 783 (1445)
..+...-..+++|+++|.+++++...+++++++|||-... +......+.+. +. .
T Consensus 73 ------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~-----l~~~ 129 (178)
T d1ye8a1 73 ------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI-----MHDP 129 (178)
T ss_dssp ------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH-----HTCT
T ss_pred ------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-----HCCC
T ss_conf ------------------30376256653201378999999740997423027773100457999999987-----5057
Q ss_pred CCEEEEECCCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 965999725810464179899994987999529
Q 000522 784 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 816 (1445)
Q Consensus 784 ~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~G~ 816 (1445)
++|+|+++|+....+.+|++..+++|++.+.+.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 978999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=3.5e-10 Score=92.88 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHCCEEEEE
Q ss_conf 9993499999999986----25997999846566889997999999998727-994799851691378651979999
Q 000522 1357 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1428 (1445)
Q Consensus 1357 ~LS~GQrQll~LARAl----Lr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f-~~~TvI~IaHrl~ti~~~D~I~vl 1428 (1445)
.+|||||.+++||-.+ ..+++|++||||+++||.++...+-+.|++.. .++-+|+|||+......+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=6.6e-08 Score=74.87 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEE--EEC
Q ss_conf 9993499999999986----2599799984656688999799999999872799479985169137865197999--939
Q 000522 1357 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI--LDH 1430 (1445)
Q Consensus 1357 ~LS~GQrQll~LARAl----Lr~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f~~~TvI~IaHrl~ti~~~D~I~v--l~~ 1430 (1445)
.+|.|||+++.++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|+++. |++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C--EEEE
Q ss_conf 7--4831
Q 000522 1431 G--HLPH 1435 (1445)
Q Consensus 1431 G--~ivE 1435 (1445)
| +|++
T Consensus 299 g~s~i~~ 305 (308)
T d1e69a_ 299 GVSAIVP 305 (308)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
T ss_conf 9999999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=5.2e-07 Score=67.76 Aligned_cols=76 Identities=32% Similarity=0.338 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHHC----CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCEEEE--
Q ss_conf 866248999999999981----39999998088767189999999999641956689659997258104641798999--
Q 000522 732 VNLSGGQRARLALARAVY----HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV-- 805 (1445)
Q Consensus 732 ~~LSGGQKqRIaLARAvY----~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~l~~aD~Iiv-- 805 (1445)
..+|+|||+...++.... ..+.++++|||=++||+.-.+.+.+. +.. ..++.-+|++||+...++.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~-l~~-~~~~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL-LKE-NSKHTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH-HHH-HTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCCEEEEE
T ss_conf 102577766777776655654226744554320335797899999999-998-554887999989889997324289999
Q ss_pred EECC
Q ss_conf 9498
Q 000522 806 MDKG 809 (1445)
Q Consensus 806 l~~G 809 (1445)
+++|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EECC
T ss_conf 9699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=4.3e-06 Score=60.54 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHH--H--CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECCCCHHHHHCCEEEEE
Q ss_conf 8662489999999999--8--1399999980887671899999999996419566-896599972581046417989999
Q 000522 732 VNLSGGQRARLALARA--V--YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVM 806 (1445)
Q Consensus 732 ~~LSGGQKqRIaLARA--v--Y~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll-~~kTvIlvTH~~~~l~~aD~Iivl 806 (1445)
..||||||.+++||-. + +..+++++||||.++||+.....+.+. +.. +. ++.-+|++||+.+.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~-~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRR-HRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHH-HCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999-999-728998899995878999736617999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.83 E-value=0.002 Score=39.38 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=69.1
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEECCEEEEECCCCCCCCC-CHHHHHHCCCCCCHHHH
Q ss_conf 4011026850997999995899837899999863-846887089981909998388878884-58899723999993439
Q 000522 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG-EMMLTHGSIHASGSIAYVPQVPWILSG-TIRDNILFGKNYDPQSY 703 (1445)
Q Consensus 626 ~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLG-e~~~~~G~v~v~g~iayv~Q~pwl~n~-TIreNIlfg~~~d~~~y 703 (1445)
+=.|+++ . +++++|.||+.|||||+|+++.= .+-...|.. +...-+-++.-..|+.. -..|++.-|. ..+
T Consensus 27 VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~-vpA~~~~i~~~d~I~~~~~~~d~~~~~~----StF 98 (224)
T d1ewqa2 27 VPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSF-VPAEEAHLPLFDGIYTRIGASDDLAGGK----STF 98 (224)
T ss_dssp CCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCSEEEEECCC------CC----SHH
T ss_pred ECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE-EECCCEEEEECCEEEEEECCCCCCCCCC----CHH
T ss_conf 4555884--7-867999788734532345565899999852504-6137519940116999987776023783----078
Q ss_pred HHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99999806527786116997212037988662489999999999813999999808876718999999999964195668
Q 000522 704 SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 783 (1445)
Q Consensus 704 ~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~ 783 (1445)
..+-+|++-.----....++|+||.+++=|+.-+..+....+.. +.+
T Consensus 99 --------------------------------~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~-L~~ 145 (224)
T d1ewqa2 99 --------------------------------MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEA-LHE 145 (224)
T ss_dssp --------------------------------HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHH-HHH
T ss_pred --------------------------------HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHH-HHH
T ss_conf --------------------------------98678898775028977278554545686233200258888888-862
Q ss_pred -CCEEEEECCCCHHHHH
Q ss_conf -9659997258104641
Q 000522 784 -QKTRILCTHNVQAISA 799 (1445)
Q Consensus 784 -~kTvIlvTH~~~~l~~ 799 (1445)
+.+.+++||..+....
T Consensus 146 ~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 146 RRAYTLFATHYFELTAL 162 (224)
T ss_dssp HTCEEEEECCCHHHHTC
T ss_pred CCCCEEEEEECHHHHHH
T ss_conf 37613786520233322
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.74 E-value=0.0015 Score=40.37 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 5099799999589983789999986384688708998
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 670 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v 670 (1445)
+..+.-+.|+|++||||||+++++++++++..=-+.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.54 E-value=0.0068 Score=35.21 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=68.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 0997999995899837899999863846887089-981909998388878884588997239999934399999980652
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v-~v~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~ac~L~ 713 (1445)
.++-++.|.||+||||||.+.+++.+++....+| .+..++-|. .|+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~--~~~------------------------------- 202 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD--IDG------------------------------- 202 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC--CSS-------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CCC-------------------------------
T ss_conf 41054898767877744779998666257874699962674345--678-------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 77861169972120379886624899999999998139999998088767189999999999641956689659997258
Q 000522 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793 (1445)
Q Consensus 714 ~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~ 793 (1445)
--++.+.+ ..|+.---+|..++=++|||++.+|+- |+.+++..++.+.. |+.|+-.-|.
T Consensus 203 --------~~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~t-----GhlV~tTlHa 261 (401)
T d1p9ra_ 203 --------IGQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQASLT-----GHLVMSTLHT 261 (401)
T ss_dssp --------SEEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHHT-----TCEEEEEECC
T ss_pred --------CCEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHHHC-----CCEEEEEECC
T ss_conf --------87026558-----767799999999984138889845768---75999999999724-----9858998336
Q ss_pred CHH
Q ss_conf 104
Q 000522 794 VQA 796 (1445)
Q Consensus 794 ~~~ 796 (1445)
-+-
T Consensus 262 ~~a 264 (401)
T d1p9ra_ 262 NTA 264 (401)
T ss_dssp SSS
T ss_pred CCH
T ss_conf 766
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.48 E-value=0.0097 Score=33.96 Aligned_cols=153 Identities=10% Similarity=0.126 Sum_probs=75.1
Q ss_pred EEEEEEE--EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 0110268--50997999995899837899999863846887089981909998388878884588997239999934399
Q 000522 627 LNQVSLC--LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYS 704 (1445)
Q Consensus 627 L~~i~l~--i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~ 704 (1445)
|+++ +. +++|+++.|.|+.|||||+++.-++-+.....+ .+.|.+-+ . ..+.+.
T Consensus 15 LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----~------------~~~~~~ 70 (242)
T d1tf7a2 15 LDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----E------------SRAQLL 70 (242)
T ss_dssp HHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----S------------CHHHHH
T ss_pred HHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----C------------CHHHHH
T ss_conf 9884-5689869849999918999999999999999987232------44112126-----7------------999999
Q ss_pred HHHHHHCCHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCC---CHHHHHHHHHHHHCC
Q ss_conf 99998065277861-1699721203798866248999999999981-399999980887671---899999999996419
Q 000522 705 ETLKACTLDVDISL-MVGGDMAYIGEKGVNLSGGQRARLALARAVY-HGSDIYMLDDVLSAV---DAQVARWILSNAIMG 779 (1445)
Q Consensus 705 ~vi~ac~L~~Dl~~-lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY-~~~~I~lLDDplSaL---D~~t~~~I~~~~i~g 779 (1445)
+ .++.+..|... ...|....+........ .+...-.+.+++. .++++++.|...... +..-....... +..
T Consensus 71 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~-l~~ 146 (242)
T d1tf7a2 71 R--NAYSWGMDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG-VTG 146 (242)
T ss_dssp H--HHHTTSCCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHH-HHH
T ss_pred H--HHHHCCCCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHH-HHH
T ss_conf 9--99982998699854586179973000101-7999999999998408853322043143048999999999999-999
Q ss_pred CCCC--CCEEEEECCCCH-----------HHHHCCEEEEEEC
Q ss_conf 5668--965999725810-----------4641798999949
Q 000522 780 PHML--QKTRILCTHNVQ-----------AISAADMVVVMDK 808 (1445)
Q Consensus 780 ~ll~--~kTvIlvTH~~~-----------~l~~aD~Iivl~~ 808 (1445)
+++ +.|++++.|... .-..||-|+.++.
T Consensus 147 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 147 -YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp -HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred -HHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf -99986983999985675125544577640464216999998
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0031 Score=37.89 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=65.9
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEECCEEEEECCCCCCCCC-CHHHHHHCCC-CCCHHH
Q ss_conf 40110268509979999958998378999998638-46887089981909998388878884-5889972399-999343
Q 000522 626 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE-MMLTHGSIHASGSIAYVPQVPWILSG-TIRDNILFGK-NYDPQS 702 (1445)
Q Consensus 626 ~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe-~~~~~G~v~v~g~iayv~Q~pwl~n~-TIreNIlfg~-~~d~~~ 702 (1445)
+=+|++++ +.+.+..|+||+.|||||+|+++.=- +-...|.. +...-+-.+--..|+.. -..|++--|. .|
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~-VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F---- 104 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDRIFTRVGAADDLASGRSTF---- 104 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCEEEEEEC-----------C----
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCE-EECCCEECCCCHHHEEEECCCCCCCCCHHHH----
T ss_conf 64057988-99539999546731368999987999999872976-7417666134420234874675343653189----
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999980652778611699721203798866248999999999981399999980887671899999999996419566
Q 000522 703 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 782 (1445)
Q Consensus 703 y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll 782 (1445)
..+-+|++-.----.+..++|+||++++=++.-+..+....+.. +.
T Consensus 105 ---------------------------------~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~-l~ 150 (234)
T d1wb9a2 105 ---------------------------------MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAEN-LA 150 (234)
T ss_dssp ---------------------------------HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHH-HH
T ss_pred ---------------------------------HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH-HH
T ss_conf ---------------------------------99999999999745466088532223587745666789876454-32
Q ss_pred -CCC-EEEEECCCCHH
Q ss_conf -896-59997258104
Q 000522 783 -LQK-TRILCTHNVQA 796 (1445)
Q Consensus 783 -~~k-TvIlvTH~~~~ 796 (1445)
++. .+|++||..+.
T Consensus 151 ~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 151 NKIKALTLFATHYFEL 166 (234)
T ss_dssp HTTCCEEEEECSCGGG
T ss_pred CCCCCEEEEECCHHHH
T ss_conf 0454428985246877
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.29 E-value=0.0079 Score=34.66 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=33.8
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCC
Q ss_conf 011026850997999995899837899999863846887089981909998388
Q 000522 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1445)
Q Consensus 627 L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~ 680 (1445)
|+++.--+.+|++++|.|++|+|||+|+.-+.-.+....| .++.|.+-+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----~~v~~~s~E 73 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----KKVGLAMLE 73 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEESS
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEC
T ss_conf 8887469789808999947999799999999972655336-----634576401
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.95 E-value=0.0034 Score=37.59 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9979999958998378999998638468870899
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~ 669 (1445)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.043 Score=28.88 Aligned_cols=124 Identities=20% Similarity=0.169 Sum_probs=62.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 79999958998378999998638468870899819099983888788845889972399999343999999806527786
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~ac~L~~Dl~ 717 (1445)
=-++++|++|+|||||+++++|+-... ++..| ++.++.+.....+.. .
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~----~~~~~~~~~~~~~~~-----------~----- 49 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIA----GTTRDVLREHIHIDG-----------M----- 49 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSST----TCCCSCEEEEEEETT-----------E-----
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEE------------EECCC----CCCCCEEEEEEECCC-----------C-----
T ss_conf 899998999998999999996888667------------51246----642204765320268-----------2-----
Q ss_pred HCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCH
Q ss_conf 11699721203798--8662489999999999813999999808876718999999999964195668965999725810
Q 000522 718 LMVGGDMAYIGEKG--VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 795 (1445)
Q Consensus 718 ~lp~GD~T~iGe~G--~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~ 795 (1445)
....+...| ..-.+.++..+..+...|.++++++++-..+.-+.....+.+...+.. ...++.+|+|-+..+
T Consensus 50 -----~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 50 -----PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR-LPAKLPITVVRNKAD 123 (161)
T ss_dssp -----EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH-SCTTCCEEEEEECHH
T ss_pred -----EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEECCCHHH
T ss_conf -----35413653212246520247899999998741332011025654203455544455542-014101020465444
Q ss_pred HHHH
Q ss_conf 4641
Q 000522 796 AISA 799 (1445)
Q Consensus 796 ~l~~ 799 (1445)
..+.
T Consensus 124 l~~~ 127 (161)
T d2gj8a1 124 ITGE 127 (161)
T ss_dssp HHCC
T ss_pred HHHH
T ss_conf 3355
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.033 Score=29.74 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=63.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC----CCCCEEEEECCEEEEECCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf 5099799999589983789999986384----68870899819099983888788845889972-399999343999999
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEM----MLTHGSIHASGSIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLK 708 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~----~~~~G~v~v~g~iayv~Q~pwl~n~TIreNIl-fg~~~d~~~y~~vi~ 708 (1445)
+.+|+++.|.|+.|+|||+|+..+.-.+ +...+...-.+.+.|++-+.- ...+++.+. .+..++...+.....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 55895899992899989999999999997699721112357873689851234--9999999999862368666531233
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHHHHHCCCCCC
Q ss_conf 80652778611699721203798866248999999999981399999980887671-----8999999999964195668
Q 000522 709 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV-----DAQVARWILSNAIMGPHML 783 (1445)
Q Consensus 709 ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaL-----D~~t~~~I~~~~i~g~ll~ 783 (1445)
. +...+. .+...... -....-.+.+ -..+++++++|-..... |....+.++.. +.. +.+
T Consensus 104 ~------~~~~~~-----~~~~~~~~--~~~~~~~~~~-~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~-l~~-la~ 167 (274)
T d1nlfa_ 104 G------LLIQPL-----IGSLPNIM--APEWFDGLKR-AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR-MEA-IAA 167 (274)
T ss_dssp H------EEECCC-----TTSCCCTT--SHHHHHHHHH-HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH-HHH-HHH
T ss_pred C------CEECCC-----CCCCCHHH--HHHHHHHHHH-HCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHH-HHH-HHH
T ss_conf 3------232145-----67420357--8999999887-526765896281354226652322568999988-777-764
Q ss_pred --CCEEEEECCC
Q ss_conf --9659997258
Q 000522 784 --QKTRILCTHN 793 (1445)
Q Consensus 784 --~kTvIlvTH~ 793 (1445)
+.|+|++.|.
T Consensus 168 ~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 168 DTGCSIVFLHHA 179 (274)
T ss_dssp HHCCEEEEEEEC
T ss_pred CCCCCEEHHHHC
T ss_conf 479754013100
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.051 Score=28.28 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=21.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 85893999987999988899998834
Q 000522 1247 IEGGTQVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1247 I~~GekvgIvGrTGSGKSTL~~~L~r 1272 (1445)
+.||+.+-|+|++|+||||++..+.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.42 E-value=0.0079 Score=34.69 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999879999888999988347989873799
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1282 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~ 1282 (1445)
+|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.39 E-value=0.01 Score=33.87 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++|+|++|+|||||+++++|+-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.17 E-value=0.0072 Score=35.00 Aligned_cols=27 Identities=52% Similarity=0.677 Sum_probs=22.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 999958998378999998638468870
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~~~~G 666 (1445)
++|+|++|+|||||+++|+|.-....|
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999899999789999999588867775
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.08 E-value=0.039 Score=29.21 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=15.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999958998378999998638
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++++|++||||||+.+.|..+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.06 E-value=0.0029 Score=38.15 Aligned_cols=33 Identities=39% Similarity=0.517 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 997999995899837899999863846887089
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v 668 (1445)
+|+.++++|++|.|||||+++|+|+.....|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.93 E-value=0.085 Score=26.50 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=63.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 50997999995899837899999863846887089981909998388878884588997239999934399999980652
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~ac~L~ 713 (1445)
+++..-+.+.||.|+|||++.+++.+++.. .+-+++ +
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~------------------------------~---- 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK------------------------------G---- 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC------------------------------H----
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE------------------------------H----
T ss_conf 998875788789987630477887877189---------479988------------------------------7----
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH---------HHHHHHHHH---HHCCCC
Q ss_conf 77861169972120379886624899999999998139999998088767189---------999999999---641956
Q 000522 714 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA---------QVARWILSN---AIMGPH 781 (1445)
Q Consensus 714 ~Dl~~lp~GD~T~iGe~G~~LSGGQKqRIaLARAvY~~~~I~lLDDplSaLD~---------~t~~~I~~~---~i~g~l 781 (1445)
.|+.. +..| ...++-|-.+.+|--..|-|+++||.=+.... ...+.+... .+.+ .
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~ 141 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG-M 141 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C
T ss_conf 99525------3165------158999999999986398435687546324557876788737999999999999628-6
Q ss_pred CC-C-CEEEEECCCCHHHHH
Q ss_conf 68-9-659997258104641
Q 000522 782 ML-Q-KTRILCTHNVQAISA 799 (1445)
Q Consensus 782 l~-~-kTvIlvTH~~~~l~~ 799 (1445)
.. + --+|.+||+.+.++.
T Consensus 142 ~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 142 STKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ----CCEEEECCBSCTTTSC
T ss_pred CCCCCEEEEEECCCCHHCCH
T ss_conf 77799899991799222799
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.88 E-value=0.059 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 3999987999988899998834798987379997
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~Id 1284 (1445)
+.|.|+|++||||||+++.|.+-. .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEEC
T ss_conf 799998999999999999999957---9979960
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.82 E-value=0.046 Score=28.61 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=47.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 50997999995899837899999863846887089981909998388878884588997239999934399999980652
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 713 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~ac~L~ 713 (1445)
-++-++++++|+.||||||+.+.++-+. |.+.+ +++ .+ ..++++.+.+
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~----~~~~i-------~~D----------~~--------~~~~~~~~~~--- 58 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHV-------NRD----------TL--------GSWQRCVSSC--- 58 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGG----TCEEE-------EHH----------HH--------CSHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC----CCEEE-------CHH----------HH--------HHHHHHHHHH---
T ss_conf 9999899998999998999999999765----97897-------607----------77--------7888999999---
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEC
Q ss_conf 7786116997212037988662489999-99999981399999980
Q 000522 714 VDISLMVGGDMAYIGEKGVNLSGGQRAR-LALARAVYHGSDIYMLD 758 (1445)
Q Consensus 714 ~Dl~~lp~GD~T~iGe~G~~LSGGQKqR-IaLARAvY~~~~I~lLD 758 (1445)
-..+..|....+. +.+++-.||.+ +.+|+..-....++.+|
T Consensus 59 --~~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 59 --QAALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp --HHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred --HHHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf --9999779995551--76799999999999998558887999948
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.01 Score=33.88 Aligned_cols=46 Identities=11% Similarity=0.225 Sum_probs=32.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCH
Q ss_conf 99999589983789999986384688708998190999838887888458
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTI 688 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~n~TI 688 (1445)
+++|.|++||||||+.+.|-..+....+ +.++..++++.+......
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECCCHH
T ss_conf 9999689999876899999999730468----996599952156898458
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.71 E-value=0.0089 Score=34.27 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9799999589983789999986384688
Q 000522 637 GSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1445)
Q Consensus 637 G~l~~IvG~vGsGKSTLL~aiLGe~~~~ 664 (1445)
|.+++|+||+||||||+.+.+..+.+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.69 E-value=0.011 Score=33.65 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 998589399998799998889999883479898737999
Q 000522 1245 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1283 (1445)
Q Consensus 1245 l~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~I 1283 (1445)
.-++.+..+-|+|+|||||||++++|++.+++..=-|.|
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 999837888999403566257899986530145623311
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.69 E-value=0.01 Score=33.76 Aligned_cols=24 Identities=50% Similarity=0.753 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
-++++|.+|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.00037 Score=45.18 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=65.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCC------CCCC
Q ss_conf 9999879999888999988347989873799979617999927561241888277765675478723979------9999
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------HMND 1325 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~gTIR~NLdp~------~~~s 1325 (1445)
.|.|+|+.|+|||||+..+.+.+....+.+.+.+.+........+......+.|+...+.....++.... ....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred HHHHHHHHHHCCHH--HHHHHC---CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 27799999981389--999958---9940551499999934999999999862599799984656688999799999999
Q 000522 1326 DLKIWSVLEKCHVK--EEVEAV---GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1400 (1445)
Q Consensus 1326 d~ei~~aL~~~~l~--~~i~~l---gLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ILiLDEaTS~lD~~T~~~Iq~~I 1400 (1445)
+.+ .++..... +.+... +.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.+
T Consensus 83 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (189)
T d2i3ba1 83 DLT---SFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEI 157 (189)
T ss_dssp CHH---HHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHH
T ss_pred CHH---HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHH
T ss_conf 377---777788999999988762189706861433330535999999999854686599961555775569--999998
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 87279947998516
Q 000522 1401 SSECKGMTVITIAH 1414 (1445)
Q Consensus 1401 ~~~f~~~TvI~IaH 1414 (1445)
++ ..+.+++.++.
T Consensus 158 ~~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 158 RN-RKDVKVFNVTK 170 (189)
T ss_dssp HT-TCCSEEEECCS
T ss_pred HC-CCCCEEEEECH
T ss_conf 67-89974999786
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.62 E-value=0.01 Score=33.88 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.61 E-value=0.021 Score=31.34 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5099799999589983789999986384
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
+|+|+++.|.|+.|||||+|..-++-..
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5588799998589898899999999986
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.16 E-value=0.06 Score=27.70 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=55.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CCEEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 999958998378999998638468--870899819099983888788845889972399999343999999806527786
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMML--THGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~~--~~G~v~v~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~vi~ac~L~~Dl~ 717 (1445)
++|+|++|+|||||..+||..... ..|++. +..+.. .|+++..++-+ ....-..
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~---------~g~~~~------------D~~~~E~~r~~---ti~~~~~ 60 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVE---------EGTTTT------------DYTPEAKLHRT---TVRTGVA 60 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG---------GTCCSS------------CCSHHHHHTTS---CCSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH---------HCCCCC------------CCHHHHHHHCC---EEEEECC
T ss_conf 99994889809999999999709755306622---------221135------------62698887387---6875102
Q ss_pred --HCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf --1169972120379886-6248999999999981-39999998088767189999999999641956689659997258
Q 000522 718 --LMVGGDMAYIGEKGVN-LSGGQRARLALARAVY-HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 793 (1445)
Q Consensus 718 --~lp~GD~T~iGe~G~~-LSGGQKqRIaLARAvY-~~~~I~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~ 793 (1445)
.+.+---+.|.--|.. .+|- .. ||+- ++.-|++. |...++-+.|.+++ +.+. .++..++++-+.
T Consensus 61 ~~~~~~~~~n~iDtPGh~dF~~e-~~-----~al~~~D~avlvv-da~~Gv~~~t~~~~-~~~~----~~~~p~~i~iNk 128 (267)
T d2dy1a2 61 PLLFRGHRVFLLDAPGYGDFVGE-IR-----GALEAADAALVAV-SAEAGVQVGTERAW-TVAE----RLGLPRMVVVTK 128 (267)
T ss_dssp EEEETTEEEEEEECCCSGGGHHH-HH-----HHHHHCSEEEEEE-ETTTCSCHHHHHHH-HHHH----HTTCCEEEEEEC
T ss_pred CCCCCCCCEEEECCCCHHHHHHH-HH-----HHHCCCCCEEEEE-ECCCCCCCHHHHHH-HHHH----HCCCCCCCCCCC
T ss_conf 22234321068806815543355-65-----4312467338984-23577421157887-7655----404431013332
Q ss_pred CHH
Q ss_conf 104
Q 000522 794 VQA 796 (1445)
Q Consensus 794 ~~~ 796 (1445)
++-
T Consensus 129 ~D~ 131 (267)
T d2dy1a2 129 LDK 131 (267)
T ss_dssp GGG
T ss_pred CCC
T ss_conf 022
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.048 Score=28.51 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=36.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 09979999958998378999998638468870899819099983888788845889972399999343999
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 705 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~ 705 (1445)
..+.+.++.|++||||||+.+.|...+.. ..++ ..++...........+.++.......
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~----~~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA----AFLD--------GDFLHPRRNIEKMASGEPLNDDDRKP 62 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC----EEEE--------GGGGCCHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEEC--------HHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf 98718999899998989999999998697----8310--------36645998853002476300113477
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.10 E-value=0.13 Score=25.15 Aligned_cols=173 Identities=15% Similarity=0.235 Sum_probs=80.0
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHCCE-EEECCCCCCCCCCHHH
Q ss_conf 320013998589399998799998889999883-47989873799979617999927561241-8882777656754787
Q 000522 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILVDGLNIINTPVRDLRGRF-AVVPQSPFLFEGSLRD 1316 (1445)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~-rl~~~~~G~I~IdG~di~~i~~~~lR~~i-~~IpQdp~lF~gTIR~ 1316 (1445)
.|+++.--+.|||.+-|.|++|+||||++.-+. ++..-..-.+.+-. -..+.+.+..++ +...+-+.--
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~------ 94 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQ------ 94 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGG------
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHH------
T ss_conf 688874697898089999479997999999999726553366345764---01111357769999864587101------
Q ss_pred HCCCCCCCCHHHHHHHHHHCCHHHHHHHC-CCCHH-HHCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCC-----C
Q ss_conf 23979999927799999981389999958-99405-51499999934999999999862--5997999846566-----8
Q 000522 1317 NLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF-VKESGISFSVGQRQLICLARALL--KSSKVLCLDECTA-----N 1387 (1445)
Q Consensus 1317 NLdp~~~~sd~ei~~aL~~~~l~~~i~~l-gLdt~-v~e~G~~LS~GQrQll~LARAlL--r~~~ILiLDEaTS-----~ 1387 (1445)
.+..-...++...+....+.. +.+.. ..+........ .++...+... .+++++++|=.+- +
T Consensus 95 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~ 164 (277)
T d1cr2a_ 95 --------SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASG 164 (277)
T ss_dssp --------CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC------
T ss_pred --------HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf --------012222214567788898874035214662143310689--9999865432136762599705421203465
Q ss_pred CCHH--HHHHHHHHHHHHC--CCCEEEEECCCH----------------HHH-------HHCCEEEEEEC
Q ss_conf 8999--7999999998727--994799851691----------------378-------65197999939
Q 000522 1388 VDAQ--TASILQNAISSEC--KGMTVITIAHRI----------------STV-------LNMDEILILDH 1430 (1445)
Q Consensus 1388 lD~~--T~~~Iq~~I~~~f--~~~TvI~IaHrl----------------~ti-------~~~D~I~vl~~ 1430 (1445)
-+.. .-..+.+.++... .+|+|++++|=- +.+ ..+|.++.+..
T Consensus 165 ~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.013 Score=32.96 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999995899837899999863846887
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~ 665 (1445)
+++|+|+.|||||||++.|+.++....
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g 30 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARG 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899991899989999999999999779
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.99 E-value=0.014 Score=32.78 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
+|+|+|++|+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.98 E-value=0.013 Score=32.88 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999589983789999986384
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.|+++++.|++||||||+.+.+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.028 Score=30.37 Aligned_cols=66 Identities=26% Similarity=0.475 Sum_probs=39.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHCCCCC---CHHHHHHHHHHHCC
Q ss_conf 997999995899837899999863846887089981909998388878884588997239999---93439999998065
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTL 712 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~n~TIreNIlfg~~~---d~~~y~~vi~ac~L 712 (1445)
.|.+++|+||+|+||+||.+.++-+.+...-.. .|.|..-.| |++=.-|..| +++.+++-+++-.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~----~is~TTR~~-------R~~E~~G~dY~Fvs~~~F~~~i~~g~f 69 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV----SVSHTTRQP-------RPGEVHGEHYFFVNHDEFKEMISRDAF 69 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE----CCCEECSCC-------CTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE----EEEEECCCC-------CCCCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 980999999999999999999986398668427----888763678-------865543212334328999987542111
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.73 E-value=0.0097 Score=33.97 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 939999879999888999988347989
Q 000522 1250 GTQVGIVGRTGAGKSSILNALFRLTPI 1276 (1445)
Q Consensus 1250 GekvgIvGrTGSGKSTL~~~L~rl~~~ 1276 (1445)
|..|.|+||||||||||.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.015 Score=32.57 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879999888999988347989
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPI 1276 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~ 1276 (1445)
.++|+|.+|||||||++.|.+-+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.49 E-value=0.033 Score=29.72 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=27.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8939999879999888999988347989873799979
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG 1285 (1445)
.|+.|.|.|++||||||+.+.|.+-+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.46 E-value=0.024 Score=30.81 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.41 E-value=0.019 Score=31.72 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++|+|+.++|||||+++|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.38 E-value=0.0085 Score=34.43 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=38.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCC
Q ss_conf 89399998799998889999883479898737999796179999275612418882777656
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1310 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF 1310 (1445)
+|....++|.||.|||||+++|.+-.....|.|.-.. .-+.|+-|.+--+-+...++.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~----~rGrHTTt~~~l~~~~gg~ii 153 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL----GRGKHTTRHVELIHTSGGLVA 153 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCC----CCCCEEEEEEEEEECCCCEEE
T ss_conf 3564999877873487898751517676403555335----897124434788862797899
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.03 Score=30.08 Aligned_cols=24 Identities=58% Similarity=0.717 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 939999879999888999988347
Q 000522 1250 GTQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1250 GekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
|=||+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.25 E-value=0.026 Score=30.56 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.15 E-value=0.035 Score=29.60 Aligned_cols=23 Identities=48% Similarity=0.807 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++++|++|+|||||+++++|+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.14 E-value=0.18 Score=23.96 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
-+.+.||.|||||++.+++..|+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.028 Score=30.35 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCC
Q ss_conf 9999958998378999998638468870899819099983888788
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 684 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~ 684 (1445)
+++|.|++||||||+.+.|.-.+...... .....+..++|+.|-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~-~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC-CCCCCEEEEECCCCCC
T ss_conf 99998999787999999999996410134-5788439993465322
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.11 E-value=0.036 Score=29.45 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
.++++|+.|+|||||+++|+|+-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.056 Score=27.97 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=26.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 509979999958998378999998638468
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
+++|+++.|.|+.|||||+|+..++.....
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 859979999958999999999999999988
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.10 E-value=0.035 Score=29.53 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++|+|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.06 E-value=0.047 Score=28.53 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=24.3
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 685099799999589983789999986384
Q 000522 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 632 l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
+.=++|.++.+.|.+||||||+.+.|.-.+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 858998699998999999899999999887
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.05 E-value=0.026 Score=30.56 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999995899837899999863846887
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~ 665 (1445)
...|+|..|||||||+..++.++....
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 999980999989999999999998679
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.04 E-value=0.18 Score=23.86 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=48.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 58939999879999888999988347989873799979617999927561241888277765675478723979999927
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1327 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~gTIR~NLdp~~~~sd~ 1327 (1445)
+..+.|-++|..||||||+...++.- .|.+.|+ .+++++ -.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~--------~D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVN--------RDTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEE--------HHHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEEC--------HHHHHH---------------------------HH
T ss_conf 99989999899999899999999976----5978976--------077778---------------------------88
Q ss_pred HHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 79999998138999995899405514999999349999-99999862599799984
Q 000522 1328 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL-ICLARALLKSSKVLCLD 1382 (1445)
Q Consensus 1328 ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQl-l~LARAlLr~~~ILiLD 1382 (1445)
.+.+.++. .+. .|.+..++. .|.+..+|+. +.+|+..=-+..++.+|
T Consensus 53 ~~~~~~~~-----~l~-~g~~vIiD~--t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA-----ALR-QGKRVVIDN--TNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH-----HHH-TTCCEEEES--CCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH-----HHH-CCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999-----997-799955517--6799999999999998558887999948
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.19 Score=23.81 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=25.5
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 011026850997999995899837899999863846
Q 000522 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 627 L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
++++....+ .-+.+.||.|||||++.+++..|+.
T Consensus 37 ~~~~g~~~~--~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 37 FQKLGGKIP--KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp C-----CCC--CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHCCCCCC--CEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 998699988--8678668998882289999999829
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.037 Score=29.36 Aligned_cols=22 Identities=45% Similarity=0.890 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
.++++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.95 E-value=0.028 Score=30.33 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=35.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC--------------CCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 8939999879999888999988347989--------------873799979617999927561241
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTPI--------------CGGQILVDGLNIINTPVRDLRGRF 1300 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~~--------------~~G~I~IdG~di~~i~~~~lR~~i 1300 (1445)
.|..+-|+|||||||+||.+.|+.-.+. ..|+ +||+|.--++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655--432123343289999875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.94 E-value=0.19 Score=23.76 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999958998378999998638468
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
..+.||.|+||||+..+++-++..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~~ 59 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIFG 59 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998899999889999999976227
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.93 E-value=0.022 Score=31.18 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|..|+|||||+++|.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.91 E-value=0.022 Score=31.09 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEE
Q ss_conf 399998799998889999883479898---7379997961
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLN 1287 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~~~~---~G~I~IdG~d 1287 (1445)
..+||+|.+|||||||+..|.+.+... -|.|..|+.+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 0999980999989999999999998679837999831676
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.02 Score=31.51 Aligned_cols=23 Identities=48% Similarity=0.638 Sum_probs=12.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999888999988347
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
-+|+|+|++++|||||+++|.+.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 78999889999899999998589
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.80 E-value=0.2 Score=23.62 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999958998378999998638468
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
-+.+.||.|||||++.+++..++..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~~ 66 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESNF 66 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 7998896999889999998620100
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.73 E-value=0.039 Score=29.21 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998889999883479
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
+|.++|+||+||||++++|++--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.67 E-value=0.048 Score=28.51 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=19.2
Q ss_pred HCCCCCEEEECC--CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHH
Q ss_conf 813999999808--8767189999999999641956689659997258104
Q 000522 748 VYHGSDIYMLDD--VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796 (1445)
Q Consensus 748 vY~~~~I~lLDD--plSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTH~~~~ 796 (1445)
...+.|++++|- .++.-|. .+.+. +. ..+|-+++|-+..+.
T Consensus 132 ~~~~~d~~l~~~~~~~~~~d~----~l~~~-l~---~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 132 KFYEYDFFIIISATRFKKNDI----DIAKA-IS---MMKKEFYFVRTKVDS 174 (400)
T ss_dssp TGGGCSEEEEEESSCCCHHHH----HHHHH-HH---HTTCEEEEEECCHHH
T ss_pred HHHCCEEEEEECCCCCCHHHH----HHHHH-HH---HCCCCEEEEEECCCC
T ss_conf 332265999965888878899----99999-99---769987999708632
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.21 Score=23.45 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8939999879999888999988347
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
.+=+|||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.064 Score=27.50 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=34.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHH
Q ss_conf 99998799998889999883479898737999796179999275612418882777656754787
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1316 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~gTIR~ 1316 (1445)
.|||.|++||||||+.+.|..++.-..+. .++.+|++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.55 E-value=0.21 Score=23.38 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=26.3
Q ss_pred CEEEEE-EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 200139-9858939999879999888999988347
Q 000522 1240 LHDINF-TIEGGTQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1240 L~~isl-~I~~GekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
|+.+-- -+++|..+-|.|++|+|||++..-+..-
T Consensus 15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 98845689869849999918999999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.023 Score=30.94 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 999995899837899999863846887089
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSI 668 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v 668 (1445)
.+.|+||.|+|||||++.+..++....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 999988999719999999999999779979
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.40 E-value=0.13 Score=24.99 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=22.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999589983789999986384
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++-..++|+||.||||||+.+.|...+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.39 E-value=0.053 Score=28.12 Aligned_cols=27 Identities=37% Similarity=0.668 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999589983789999986384
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
|+|-.++|.|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.025 Score=30.74 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99799999589983789999986384688
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLT 664 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~~~ 664 (1445)
+.-.++|+|+.|+|||||+..+...+...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 83289743899998999999999999756
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.18 E-value=0.048 Score=28.45 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999589983789999986384
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++|.++.++|++||||||+.++|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.16 E-value=0.075 Score=26.92 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=30.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCC
Q ss_conf 50997999995899837899999863846887089981909998388
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~ 680 (1445)
+++|+++.|.|+.|||||+|..-++-........-...+.+.|...+
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~ 77 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 77 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 86996999983899988999999999863124312689639999402
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.14 E-value=0.041 Score=29.03 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999589983789999986384
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
+.++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.14 E-value=0.0026 Score=38.56 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.8
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 01102685099799999589983789999986
Q 000522 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 658 (1445)
Q Consensus 627 L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiL 658 (1445)
.++.++++.+| +++|+|++||||||+|.||.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.96 E-value=0.067 Score=27.33 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5893999987999988899998834798
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
++|-+|.|.|++||||||+...|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.94 E-value=0.056 Score=27.97 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=26.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 589399998799998889999883479898737
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~ 1280 (1445)
.++--|-+.|+|||||||.+.++++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.83 E-value=0.044 Score=28.81 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995899837899999863846
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
+.--++++|+.|+|||||++.+.|+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 777899999999898999999967887
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.81 E-value=0.065 Score=27.43 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995899837899999863846
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
..+++.|.|++||||||+.++|..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.068 Score=27.28 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=33.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCC
Q ss_conf 85099799999589983789999986384688708998190999838887
Q 000522 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682 (1445)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pw 682 (1445)
=+|+|+++.|.|+.|||||++...++.+.............+.|.....-
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 82 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHH
T ss_conf 97689799998899887889999999999744431666624887401777
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.74 E-value=0.06 Score=27.70 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++|+|++++|||||+++|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.19 Score=23.77 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|..|+|||||++.+++.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.062 Score=27.61 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999995899837899999863846
Q 000522 637 GSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 637 G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
..+++|+||+|+||+||.+.++.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.67 E-value=0.061 Score=27.65 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|..|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.2 Score=23.60 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.53 E-value=0.063 Score=27.57 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879999888999988347989
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPI 1276 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~ 1276 (1445)
.|||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=0.08 Score=26.74 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89399998799998889999883479898737999796179999275612418882777656754787239799999277
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1328 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~gTIR~NLdp~~~~sd~e 1328 (1445)
+...|.|+|+.||||||+...|..-+ |-+.|+.-| -+|+.+ .+...-....+++-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----990885358-------999886---2010178899887640000232036
Q ss_pred HHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999981389999958994055149999993499999999986259979998465
Q 000522 1329 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384 (1445)
Q Consensus 1329 i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ILiLDEa 1384 (1445)
....+...-...... .-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~~--~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVKA--NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHT--TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCC--CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 789999998864003--777535404---313689999999861545543125798
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.44 E-value=0.28 Score=22.46 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++|+|...||||||+++|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.42 E-value=0.083 Score=26.61 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.068 Score=27.28 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++|+|+.|+|||||++++.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.37 E-value=0.066 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
.|+|+|++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.35 E-value=0.28 Score=22.40 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCC
Q ss_conf 997999995899837899999863846887089981909998388
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~ 680 (1445)
+...++++||+|+||||.+.-|.-.+. ..| .+|+.+.=+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~D 49 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG-----FKVGLVGAD 49 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT-----CCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEEE
T ss_conf 998999989999998999999999999-779-----936999720
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.35 E-value=0.06 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 979999958998378999998638468870
Q 000522 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1445)
Q Consensus 637 G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G 666 (1445)
+++++|.|+.||||||+++.|.-.+.....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~ 30 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGV 30 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 988999899998989999999999987699
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.31 E-value=0.069 Score=27.25 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=67.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CCCEEEEEC--CEEEEECCCCCCCCCCHHH------HHHCCCCCCHHHHHHHHHH
Q ss_conf 999995899837899999863846-887089981--9099983888788845889------9723999993439999998
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM-LTHGSIHAS--GSIAYVPQVPWILSGTIRD------NILFGKNYDPQSYSETLKA 709 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~-~~~G~v~v~--g~iayv~Q~pwl~n~TIre------NIlfg~~~d~~~y~~vi~a 709 (1445)
-++|+|..+||||||+++|+|+-- |.+-..... -.|-|-. ++....+.... ..-....+|......-+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTH-LPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEE-CCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 5999818989799999999689978878975406888999945-776667653065667762688622378999999999
Q ss_pred HC---------CHHHHHHC-----CCCCCCCCCCCCCCCCH--H-----HHHHHHHHHHHCCCCC--EEEECCCCCCCCH
Q ss_conf 06---------52778611-----69972120379886624--8-----9999999999813999--9998088767189
Q 000522 710 CT---------LDVDISLM-----VGGDMAYIGEKGVNLSG--G-----QRARLALARAVYHGSD--IYMLDDVLSAVDA 766 (1445)
Q Consensus 710 c~---------L~~Dl~~l-----p~GD~T~iGe~G~~LSG--G-----QKqRIaLARAvY~~~~--I~lLDDplSaLD~ 766 (1445)
.. ...+.... -..+.+.|.--|.+-+. + +.+--.+++...++++ |+...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 999999999641956689659997258
Q 000522 767 QVARWILSNAIMGPHMLQKTRILCTHN 793 (1445)
Q Consensus 767 ~t~~~I~~~~i~g~ll~~kTvIlvTH~ 793 (1445)
.....+.+. +.+ . ..+|++++|+-
T Consensus 185 ~~~~~~~~~-~~~-~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-E-GKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHH-HCS-S-CSSEEEEEECT
T ss_pred CHHHHHHHH-HCC-C-CCEEEEEEECC
T ss_conf 499999997-386-7-88589998204
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.22 E-value=0.072 Score=27.07 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|+.|+|||||++.+.++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.22 E-value=0.074 Score=26.97 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.074 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.09 E-value=0.083 Score=26.60 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999987999988899998834798
Q 000522 1250 GTQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1250 GekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
...|.|+|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.00 E-value=0.071 Score=27.13 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995899837899999863846
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
.+++|+|+.||||||+.+.|..++.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.98 E-value=0.085 Score=26.53 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5893999987999988899998834798
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
+.|..|.++|.+||||||+...|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.84 E-value=0.11 Score=25.67 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998889999883479
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
+|||+|++.+|||||+++|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.84 E-value=0.079 Score=26.78 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399998799998889999883479
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
+.+..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.84 E-value=0.083 Score=26.61 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
.|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.79 E-value=0.3 Score=22.13 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995899837899999863846
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
..+.||.|+||||+..++..|+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.32 Score=21.99 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995899837899999863846
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
+-..++++||+|+||||.+.-|.-.+.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 997999989999998999999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.097 Score=26.06 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=31.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCC
Q ss_conf 999987999988899998834798987379997961799992756124188827776567
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1311 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~ 1311 (1445)
.|||.|++||||||+.+.|...+..... ..-...+.+++||.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--------------~~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--------------DYRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--------------CGGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC--------------CCCCCCEEEEECCCCCCC
T ss_conf 9999899978799999999999641013--------------457884399934653224
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.66 E-value=0.077 Score=26.86 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999987999988899998834798
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
.+|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.50 E-value=0.13 Score=25.00 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=71.1
Q ss_pred EEEEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 011026-8509979999958998378999998638468870899819099983888788845889972399999343999
Q 000522 627 LNQVSL-CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 705 (1445)
Q Consensus 627 L~~i~l-~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl~n~TIreNIlfg~~~d~~~y~~ 705 (1445)
|+++-- -+++|+++.|.|++|+|||+|..-++.......+ ..+.|++-+.- ...++....- ..++.+.+
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~-----~~~~~~s~e~~--~~~~~~~~~~-~~~~~~~~-- 84 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-----EPGVFVTFEET--PQDIIKNARS-FGWDLAKL-- 84 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSC--HHHHHHHHGG-GTCCHHHH--
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCCCCCCCCCC--HHHHHHHHHH-CCCCHHHH--
T ss_conf 98855689969839999947999999999999999998568-----87420126679--9999999998-49984898--
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HH-HHHHHC-CCCCEEEECCCCCCC----CHHHHHHHHHHHHC
Q ss_conf 999806527786116997212037988662489999-99-999981-399999980887671----89999999999641
Q 000522 706 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR-LA-LARAVY-HGSDIYMLDDVLSAV----DAQVARWILSNAIM 778 (1445)
Q Consensus 706 vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQKqR-Ia-LARAvY-~~~~I~lLDDplSaL----D~~t~~~I~~~~i~ 778 (1445)
++.-.. ... +.....+.-...+...... +. +.+++. .+++++++|...+-. +......++..++.
T Consensus 85 -~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~ 156 (242)
T d1tf7a1 85 -VDEGKL-FIL------DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA 156 (242)
T ss_dssp -HHTTSE-EEE------ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred -HHHCCH-HHH------HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf -871430-244------421033544443024589999999999886312220020788998760572678999999999
Q ss_pred CCCCCCCEEEEECCCCHH---------HH-HCCEEEEEE
Q ss_conf 956689659997258104---------64-179899994
Q 000522 779 GPHMLQKTRILCTHNVQA---------IS-AADMVVVMD 807 (1445)
Q Consensus 779 g~ll~~kTvIlvTH~~~~---------l~-~aD~Iivl~ 807 (1445)
-....+.|++++.|.... .. .+|.++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 157 RLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 998639716884210255422246762335362999988
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.44 E-value=0.02 Score=31.55 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|++|+|||||++++.|+-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.41 E-value=0.17 Score=24.13 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=24.3
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 011026850997999995899837899999863
Q 000522 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1445)
Q Consensus 627 L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLG 659 (1445)
++.--+.+ .|.=+.+.|++|+||||+...++.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999999-999999981899998999999998
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.35 E-value=0.29 Score=22.31 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
-++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.28 E-value=0.12 Score=25.37 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999988899998834798
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
.|+|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.28 E-value=0.097 Score=26.08 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998889999883479
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.18 E-value=0.084 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.18 E-value=0.075 Score=26.97 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=9.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
+|||.|+.|||||||+..|.+
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 897438999989999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.11 Score=25.51 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998889999883479
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
..+.|+||||+||+||.+.|++-.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.00 E-value=0.095 Score=26.12 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999958998378999998638468
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
..+.+.||.||||||+.++|.+|+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.98 E-value=0.11 Score=25.65 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999958998378999998638468
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.89 E-value=0.068 Score=27.30 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCC
Q ss_conf 99999589983789999986384688708998190999838887
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 682 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pw 682 (1445)
+++|.|+.|||||||...|.-.+....|. .-.++.+|++.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~---~~~v~~iS~Ddf 69 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDF 69 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC---CCCEEEECCCCC
T ss_conf 99837998788999999999999987277---860676356777
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.77 E-value=0.14 Score=24.71 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=25.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 50997999995899837899999863846
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
+++|+++.|.|+.|+|||++..-++-...
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 62885999991799998999999999998
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.71 E-value=0.085 Score=26.52 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9399998799998889999883479898737
Q 000522 1250 GTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1445)
Q Consensus 1250 GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~ 1280 (1445)
+..|+|.|..||||||+.+.|...+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.67 E-value=0.14 Score=24.77 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
.|+++|++|+|||||+++|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=0.098 Score=26.04 Aligned_cols=44 Identities=32% Similarity=0.543 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCEECCCCCHHHHH
Q ss_conf 999987999988899998834798-------------9873799979617999927561
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTP-------------ICGGQILVDGLNIINTPVRDLR 1297 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~-------------~~~G~I~IdG~di~~i~~~~lR 1297 (1445)
-|.|+|||||||+||.+.|..-.+ |..|+ .||+|..-++.+...
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~ 59 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFK 59 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHH
T ss_conf 699989999998999999997488662477764268999997--578432432488999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.14 Score=24.79 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCC--CCCCCHHHHHHCCCCC
Q ss_conf 99799999589983789999986384688708998190999838887--8884588997239999
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW--ILSGTIRDNILFGKNY 698 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pw--l~n~TIreNIlfg~~~ 698 (1445)
+|.+++|-|+.||||||+.+.|...+....- ...+..++|+ -...-+|+....+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~------~~~~~~~ep~~~~~g~~i~~~~~~~~~~ 59 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI------RDMVFTREPGGTQLAEKLRSLLLDIKSV 59 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSCSSHHHHHHHHHHHSTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC------CEEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf 9878999899888799999999999996799------7399832989961144558988462102
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.56 E-value=0.39 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=18.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999589983789999986384
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.+...++++||+|+||||.+.-|.-.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.53 E-value=0.16 Score=24.37 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099799999589983789999986384
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
|+|--++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.49 E-value=0.11 Score=25.60 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995899837899999863846
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
+.-+++|.|+.||||||+++.|..++.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.46 E-value=0.14 Score=24.80 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999589983789999986384
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
+..+++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.37 E-value=0.12 Score=25.37 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995899837899999863846
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.26 E-value=0.16 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399998799998889999883479
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
|+|-++.|+|+.||||||+...|..-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.22 E-value=0.13 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998889999883479
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.20 E-value=0.12 Score=25.47 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=24.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999879999888999988347989873799979
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1285 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG 1285 (1445)
..|.|+|++||||||+.+.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.17 E-value=0.092 Score=26.24 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.15 E-value=0.15 Score=24.49 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
-++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.07 E-value=0.15 Score=24.66 Aligned_cols=23 Identities=43% Similarity=0.790 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++|+|++++|||||+++|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.07 E-value=0.22 Score=23.26 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9858939999879999888999988347
Q 000522 1246 TIEGGTQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
-+++|+.+-|.|++|||||++..-+..-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.36 Score=21.59 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
-++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.01 E-value=0.092 Score=26.23 Aligned_cols=21 Identities=57% Similarity=0.811 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999888999988347
Q 000522 1253 VGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1253 vgIvGrTGSGKSTL~~~L~rl 1273 (1445)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.98 E-value=0.14 Score=24.92 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589983789999986
Q 000522 639 LVAVIGEVGSGKSSLLNSIL 658 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiL 658 (1445)
+++|+|++||||||+.+.+-
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.91 E-value=0.17 Score=24.04 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09979999958998378999998638468
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.87 E-value=0.16 Score=24.39 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=32.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCC
Q ss_conf 850997999995899837899999863846887089981909998388
Q 000522 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1445)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~ 680 (1445)
-+++|.++.+.|+.|||||+++..+..+.....| .+.|+.-+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~------~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEECCC
T ss_conf 9667358998057774789999999999870898------79998654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.82 E-value=0.15 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999589983789999986384
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
--++++|..|||||||++.+.|.-
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989899999996688
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.77 E-value=0.15 Score=24.52 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
.++|+||+||||+|+.+.++-+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.76 E-value=0.07 Score=27.17 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999589983789999986384
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
+|..+.++|+.||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=88.69 E-value=0.15 Score=24.47 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999888999988347
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
=||+|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.58 E-value=0.11 Score=25.62 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995899837899999863846
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
++.+++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.56 E-value=0.17 Score=24.20 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589983789999986
Q 000522 639 LVAVIGEVGSGKSSLLNSIL 658 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiL 658 (1445)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.46 E-value=0.16 Score=24.28 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
.|||+|+..+|||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.30 E-value=0.079 Score=26.78 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=29.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCC
Q ss_conf 7999995899837899999863846887089981909998388878
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 683 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~pwl 683 (1445)
-+++|.|++||||||+.+++...+... +-+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.26 E-value=0.4 Score=21.23 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++++|..|+|||||++.++++-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.22 E-value=0.17 Score=24.09 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|+.|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.18 E-value=0.21 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=25.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 099799999589983789999986384688708
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~ 667 (1445)
-+|.+++|-|.-||||||+.+.|.-.+.. +|.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 97689999899888699999999999971-977
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=88.12 E-value=0.17 Score=24.23 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.10 E-value=0.1 Score=25.93 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999987999988899998834798
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.08 E-value=0.18 Score=23.87 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++|+|+.|+|||||++.+++.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.07 E-value=0.19 Score=23.84 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++|+|.+.+|||||+++|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.05 E-value=0.29 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997999995899837899999863846
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.98 E-value=0.19 Score=23.81 Aligned_cols=21 Identities=38% Similarity=0.784 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|..|+|||||++.+++.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.97 E-value=0.49 Score=20.51 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=16.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799999589983789999986384
Q 000522 637 GSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 637 G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
..+++++||+|+||||.+.-|.-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.94 E-value=0.33 Score=21.80 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=23.2
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 011026850997999995899837899999863
Q 000522 627 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 659 (1445)
Q Consensus 627 L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLG 659 (1445)
++.--+ .-.|.=+.+.|++|+||||+...++.
T Consensus 5 lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899999-99999999980899998999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=87.92 E-value=0.18 Score=23.97 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.88 E-value=0.13 Score=24.97 Aligned_cols=21 Identities=48% Similarity=0.770 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999888999988347
Q 000522 1253 VGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1253 vgIvGrTGSGKSTL~~~L~rl 1273 (1445)
|.|+|||||||+||.+.|..-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.85 E-value=0.19 Score=23.71 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|+.|+|||||++.+.+.-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.84 E-value=0.27 Score=22.60 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 49999999998625997--99984656688999799999999872799479985169
Q 000522 1361 GQRQLICLARALLKSSK--VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1415 (1445)
Q Consensus 1361 GQrQll~LARAlLr~~~--ILiLDEaTS~lD~~T~~~Iq~~I~~~f~~~TvI~IaHr 1415 (1445)
.+.+-..+++..++++. |++...++.....+....+.+.+... ..+|++++++-
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITKL 208 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEECC
T ss_conf 899999999999827775168763256310034999999973867-88589998204
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.59 E-value=0.2 Score=23.60 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999888999988347
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.55 E-value=0.17 Score=24.07 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5099799999589983789999986384
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++.++.|.||.||||||..+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=87.54 E-value=0.27 Score=22.56 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998889999883479
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
||.++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.52 E-value=0.27 Score=22.58 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09979999958998378999998638468
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
..+..++|.|+.|+|||||+..++-+...
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~~ 55 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELNL 55 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 05987999869998299999999997799
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.42 E-value=0.17 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 589399998799998889999883479
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
+..-||.++|++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.31 E-value=0.25 Score=22.79 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999958998378999998638468
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
++|+|.+.+|||||+.+|+|....
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 999972488699999999704121
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.28 E-value=0.48 Score=20.58 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
-++|||-..+|||||++++.+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.15 E-value=0.2 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
-++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.14 E-value=0.21 Score=23.39 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999987999988899998834798
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
-.|+|-|..||||||+++.|.+-+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.13 E-value=0.22 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=24.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 93999987999988899998834798987379997
Q 000522 1250 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1445)
Q Consensus 1250 GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~Id 1284 (1445)
...|.|+|+.||||||+...|..-+ |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.07 E-value=0.24 Score=23.01 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
.|||.|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.04 E-value=0.23 Score=23.16 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 58939999879999888999988347
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
++.=||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.04 E-value=0.23 Score=23.12 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|...+|||||++++.|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=86.98 E-value=0.23 Score=23.17 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999987999988899998834798
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
..|-++|++||||||+.+.|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.98 E-value=0.55 Score=20.10 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|+.|+|||||++.+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.96 E-value=0.11 Score=25.76 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
-++++|++++|||||+++|.|+-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.86 E-value=0.56 Score=20.05 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=23.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 985893999987999988899998834798
Q 000522 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
.+++..-+-+.|++|+|||++++++.+-+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.77 E-value=0.24 Score=23.01 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|+.|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.74 E-value=0.24 Score=22.99 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999888999988347
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
.|++++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.64 E-value=0.21 Score=23.39 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999987999988899998834798
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
.+..|+|-|..||||||++..|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.61 E-value=0.26 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999958998378999998638468
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
....+.||.|+||||+..++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.39 E-value=0.4 Score=21.19 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=18.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 50997999995899837899999863
Q 000522 634 LPKGSLVAVIGEVGSGKSSLLNSILG 659 (1445)
Q Consensus 634 i~~G~l~~IvG~vGsGKSTLL~aiLG 659 (1445)
.-.|.=+.+.|++|+||||+...++.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999980899999999999998
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.27 E-value=0.29 Score=22.31 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999988899998834798
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
.|.++|+.||||||+.+.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=86.20 E-value=0.31 Score=22.02 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99799999589983789999986384
Q 000522 636 KGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 636 ~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++..++++||+|+||||.+.-|.-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97799998999998899999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.20 E-value=0.28 Score=22.38 Aligned_cols=20 Identities=45% Similarity=0.772 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589983789999986
Q 000522 639 LVAVIGEVGSGKSSLLNSIL 658 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiL 658 (1445)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.19 E-value=0.28 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995899837899999863
Q 000522 640 VAVIGEVGSGKSSLLNSILG 659 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLG 659 (1445)
++|+|++|||||||..+||=
T Consensus 9 i~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995898998999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.18 E-value=0.27 Score=22.58 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|+.|+|||||++.+++.-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.96 E-value=0.32 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|+.|+|||||++.+++.-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.93 E-value=0.31 Score=22.12 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8509979999958998378999998638468
Q 000522 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
..++|.++.+.|+.|||||||.++++..+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.83 E-value=0.31 Score=22.11 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 9999958998378999998638468870
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~G 666 (1445)
-..+.||.|+||||+.+++..|+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.82 E-value=0.25 Score=22.76 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=26.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 850997999995899837899999863846
Q 000522 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
.+|++...++.||.|+|||++.+++.+++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=85.81 E-value=0.27 Score=22.49 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999879999888999988347
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
=.|||+|..||||||+...|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.77 E-value=0.63 Score=19.65 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=30.3
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHH-HHHHHHH--CCCCEEEEECCCHHHH
Q ss_conf 259979998465668899979999-9999872--7994799851691378
Q 000522 1373 LKSSKVLCLDECTANVDAQTASIL-QNAISSE--CKGMTVITIAHRISTV 1419 (1445)
Q Consensus 1373 Lr~~~ILiLDEaTS~lD~~T~~~I-q~~I~~~--f~~~TvI~IaHrl~ti 1419 (1445)
..+..++++||.-.+-|++--..+ ...++.. ..++.+++.+|..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.69 E-value=0.3 Score=22.23 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++++|+.|+|||||++.+++.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.63 E-value=0.24 Score=23.01 Aligned_cols=22 Identities=45% Similarity=0.685 Sum_probs=12.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999987999988899998834
Q 000522 1251 TQVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~r 1272 (1445)
-+|||.|+-|+|||||+..|.+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 5986117998889999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.63 E-value=0.34 Score=21.77 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|..|+|||||++.+.+.-
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998989939999999981885
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.53 E-value=0.28 Score=22.43 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++|+|++++|||||+.+|++..
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999478984999999999985
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.49 E-value=0.33 Score=21.87 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++|+|..|+|||||++.+++.-
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.35 E-value=0.27 Score=22.55 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|+.|+|||||++.+++.-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.23 E-value=0.45 Score=20.77 Aligned_cols=24 Identities=46% Similarity=0.556 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999958998378999998638468
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
++++|..|+|||||++.+.+.-..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999998992999999999728677
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.10 E-value=0.32 Score=21.95 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|+.|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.06 E-value=0.33 Score=21.85 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|+.|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.91 E-value=0.3 Score=22.20 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 999995899837899999863846887089981
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 671 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~ 671 (1445)
.+.|-|+.||||||+++.+..++....+.+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~ 40 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 40 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999988866789999999999865699769982
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.88 E-value=0.35 Score=21.61 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
+++|.|..||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.83 E-value=0.37 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998889999883479
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
=.|||.|..|||||||...|...+
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899837998788999999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.80 E-value=0.27 Score=22.55 Aligned_cols=42 Identities=21% Similarity=0.474 Sum_probs=34.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCC
Q ss_conf 850997999995899837899999863846887089981909998388
Q 000522 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 680 (1445)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~ 680 (1445)
-+|.|.++.|.|+.|||||+++..+..+.....| .++|..-+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~------~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEEECC
T ss_conf 8667547898058765227999999999970799------89999887
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.80 E-value=0.34 Score=21.74 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++|+|+.|+|||||++.+++.-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999939999999996299
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.78 E-value=0.33 Score=21.81 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.77 E-value=0.3 Score=22.21 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799999589983789999986384
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
--++|+|...+|||||++++.+.-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 379997899998999999997789
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.74 E-value=0.3 Score=22.18 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.73 E-value=0.3 Score=22.18 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|..|+|||||++.++++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.72 E-value=0.3 Score=22.18 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
-++++|+.|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=84.52 E-value=0.41 Score=21.13 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=30.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEEC
Q ss_conf 589399998799998889999883479898--73799979617
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLTPIC--GGQILVDGLNI 1288 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~~~~--~G~I~IdG~di 1288 (1445)
+.|..|-+.|.+||||||+.+.|...+... --.+.+||-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.44 E-value=0.38 Score=21.37 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
.++|-||+||||||..+.|.-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.41 E-value=0.26 Score=22.69 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=50.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH-HCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 999987999988899998834798987379997961799992756-1241888277765675478723979999927799
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1330 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i~~IpQdp~lF~gTIR~NLdp~~~~sd~ei~ 1330 (1445)
+|.|.|+.||||||+...|..-+ |-..| +..++ |..+ +...-....+++.++.+....++...
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~----~~~~i--------s~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~ 68 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY----QLAHI--------SAGDLLRAEI----AAGSENGKRAKEFMEKGQLVPDEIVV 68 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH----CCEEC--------CHHHHHHHHH----HHTCHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEE--------EHHHHHHHHH----HCCCHHHHHHHHHHHCCCCCCCEEEH
T ss_conf 99998899999899999999987----99178--------5007888764----11337899999998668854321210
Q ss_pred HHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999981389999958994055149999993499999999986259979998465
Q 000522 1331 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1384 (1445)
Q Consensus 1331 ~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ILiLDEa 1384 (1445)
..+...-........|. +-++ +..-..|...+.+...+...+++||-+
T Consensus 69 ~~~~~~~~~~~~~~~~~---vid~---~~~~~~q~~~l~~~~~~p~~~i~L~~~ 116 (189)
T d1zaka1 69 NMVKERLRQPDAQENGW---LLDG---YPRSYSQAMALETLEIRPDTFILLDVP 116 (189)
T ss_dssp HHHHHHHHSHHHHHTCE---EEES---CCCSHHHHHHHHTTTCCCSEEEEEECC
T ss_pred HHHHHHHHHCCCCCCCE---EEEC---CCHHHHHHHHHHHCCCCCCHHEEECHH
T ss_conf 35666765301446737---9606---212467775443013451121011100
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.32 E-value=0.66 Score=19.49 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999987999988899998834-----79898737
Q 000522 1252 QVGIVGRTGAGKSSILNALFR-----LTPICGGQ 1280 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r-----l~~~~~G~ 1280 (1445)
||.++|..|+|||||++.+.. -++|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.28 E-value=0.37 Score=21.48 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
|+.++|..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.27 E-value=0.38 Score=21.40 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHC-CC
Q ss_conf 99995899837899999863-84
Q 000522 640 VAVIGEVGSGKSSLLNSILG-EM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLG-e~ 661 (1445)
++++|..|+|||||++.+++ +.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999298999999973999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.20 E-value=0.37 Score=21.45 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=84.11 E-value=0.36 Score=21.52 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.05 E-value=0.34 Score=21.73 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=33.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCC
Q ss_conf 8509979999958998378999998638468870899819099983888
Q 000522 633 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 681 (1445)
Q Consensus 633 ~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G~v~v~g~iayv~Q~p 681 (1445)
-++.|.++.+.|+.|||||+++..+..+.....| .+.|+.-+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~------~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG------VAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC------EEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEEECCC
T ss_conf 8666336999648874889999999998754898------899998976
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.00 E-value=0.34 Score=21.78 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|+.|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=83.99 E-value=0.4 Score=21.16 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
.|||+|..||||||..+.|-.
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=83.97 E-value=0.34 Score=21.76 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999987999988899998834
Q 000522 1251 TQVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~r 1272 (1445)
=||.++|+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.95 E-value=0.41 Score=21.10 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++|+|+.||||||+.+.|.-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.92 E-value=0.27 Score=22.58 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999958998378999998638468
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
...+.||.|+||||+.+++..++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.89 E-value=0.4 Score=21.20 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|..|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=83.84 E-value=0.42 Score=21.05 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.73 E-value=0.53 Score=20.23 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=25.5
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 320013998589399998799998889999883
Q 000522 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1271 (1445)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~ 1271 (1445)
.|.+ -+++|+.+-|.|++|||||++..-+.
T Consensus 26 ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 26 LLGG---GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp HHTS---SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 3179---98699699998389998899999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=83.66 E-value=0.76 Score=18.97 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
Q ss_conf 893999987999988899998834798987379997961799
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1290 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~ 1290 (1445)
.+..+.+||+||+||||.+.=|.+.+.-..-+|.+=..|...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R 46 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 46 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 977999989999988999999999999779907999813666
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.64 E-value=0.36 Score=21.53 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=31.1
Q ss_pred EEEECCEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99980078615688633355401102685099799999589983789999986384
Q 000522 606 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 606 i~~~~~tf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
|+=+++.+..+++ .-..|+.++ .+=.++.|+|+.++|||+||+.++|..
T Consensus 8 i~~~~~~l~~~~e----~l~~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 8 IENTNGRLMANPE----ALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEETTEEEECHH----HHHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEECHH----HHHHHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9769994998999----999997079---987999988999997999999980998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.61 E-value=0.46 Score=20.71 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998889999883479
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
.|||+|...+|||||++.|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.43 E-value=0.47 Score=20.67 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=60.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998799998889999883479898737999796179999275612418882777656754787239799999277999
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1331 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~gTIR~NLdp~~~~sd~ei~~ 1331 (1445)
+|.|.|+.||||||..+.|..-+ |-..|+-- +-+|..+ -++...+.-.+.+.+.-+....|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g-------~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAG-------ELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECHH-------HHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----99267688-------9999988---7620468999999970697211340367
Q ss_pred HHHHCCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC---EEEEECC
Q ss_conf 99981389999958-99405514999999349999999998625997---9998465
Q 000522 1332 VLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK---VLCLDEC 1384 (1445)
Q Consensus 1332 aL~~~~l~~~i~~l-gLdt~v~e~G~~LS~GQrQll~LARAlLr~~~---ILiLDEa 1384 (1445)
.+... +....... .-+..+-++ +...+.|.-.+.+.+-.... ++++|.+
T Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~g---~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 LLKRE-MDQTMAANAQKNKFLIDG---FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHH-HHHHHHHCTTCCEEEEES---CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHH-HCCCCHHHHCCCCEEECC---CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 88876-412100011245111011---030489999986442105543389962476
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=83.41 E-value=0.016 Score=32.24 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=26.7
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 32001399858939999879999888999988347
Q 000522 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
..++.++.+.+| .+.|+|++||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.35 E-value=0.45 Score=20.81 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5893999987999988899998834798
Q 000522 1248 EGGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1248 ~~GekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
+.|-.|+|.|.-||||||++..|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.32 E-value=0.28 Score=22.45 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
-++++|+.|+|||||++.+.++
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.30 E-value=0.083 Score=26.59 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.27 E-value=0.43 Score=20.96 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|..|+|||||++.++++-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.27 E-value=0.38 Score=21.34 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999995899837899999863846
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
++++|.|+.||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=0.39 Score=21.30 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
-++++|..|+|||||++.+++.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.17 E-value=0.38 Score=21.38 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++++|+.||||||+.+.+.-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.17 E-value=0.55 Score=20.09 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|..|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.16 E-value=0.43 Score=20.94 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.15 E-value=0.44 Score=20.86 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998889999883479
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
+|.|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.10 E-value=0.47 Score=20.60 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999987999988899998834-----7989873
Q 000522 1252 QVGIVGRTGAGKSSILNALFR-----LTPICGG 1279 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r-----l~~~~~G 1279 (1445)
||.++|.+|+|||||++.+.+ -+.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899798999999970999876376133
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.05 E-value=0.4 Score=21.23 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997999995899837899999863846
Q 000522 635 PKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 635 ~~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
|++.+ .++||+|||||.|.+++..++.
T Consensus 48 ~~~~i-Ll~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNI-LMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCE-EEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHCCC
T ss_conf 98669-9989999888899999862132
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.96 E-value=0.52 Score=20.27 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|..|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.89 E-value=0.45 Score=20.76 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
||.+||..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.89 E-value=0.49 Score=20.46 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|..|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.89 E-value=0.5 Score=20.45 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958998378999998638
Q 000522 639 LVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
-++++|..|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.85 E-value=0.49 Score=20.46 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999958998378999998638
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe 660 (1445)
.+++|+|+.||||||..+.+..+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.82 E-value=0.31 Score=22.03 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|+.|+|||||++.+++.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.77 E-value=0.65 Score=19.54 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 979999958998378999998638468870
Q 000522 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHG 666 (1445)
Q Consensus 637 G~l~~IvG~vGsGKSTLL~aiLGe~~~~~G 666 (1445)
..-+.|.||.|+|||++++.++.++....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.76 E-value=0.4 Score=21.15 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|..|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=82.73 E-value=0.62 Score=19.68 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=25.3
Q ss_pred CCEEEEE-EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 3200139-98589399998799998889999883
Q 000522 1239 ALHDINF-TIEGGTQVGIVGRTGAGKSSILNALF 1271 (1445)
Q Consensus 1239 vL~~isl-~I~~GekvgIvGrTGSGKSTL~~~L~ 1271 (1445)
-|+++-- .+++|+.+-|.|++|+|||++..-+.
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 7988556899698399999479999999999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.69 E-value=0.41 Score=21.11 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++|+|+.|+|||||++.+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.68 E-value=0.83 Score=18.69 Aligned_cols=46 Identities=13% Similarity=0.351 Sum_probs=35.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 59979998465668899979999999987279947998516913786
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1420 (1445)
Q Consensus 1374 r~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f~~~TvI~IaHrl~ti~ 1420 (1445)
.+.+++++||+-. +..+....+.+.+.+...++.+|.++++.+-+.
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 8724999424333-454311122100221356643000102111002
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=82.67 E-value=0.46 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998799998889999883479
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
+...+.+||++|+||||.+.=|...+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.66 E-value=0.42 Score=21.03 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999958998378999998638468
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
++++|-|..||||||+++.|--.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.65 E-value=0.43 Score=20.97 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=82.61 E-value=0.44 Score=20.83 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.5
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1026850997999995899837899999863846
Q 000522 629 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 629 ~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
|.=+.+-+||-.+|.|+.|+|||+|+..|.....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.58 E-value=0.47 Score=20.61 Aligned_cols=22 Identities=45% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|..|+|||||++.+.+.-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.55 E-value=0.68 Score=19.36 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++.|.|.-|||||||++-++.+-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=82.53 E-value=0.37 Score=21.48 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC---CCCCCCCE
Q ss_conf 3999987999988899998834---79898737
Q 000522 1251 TQVGIVGRTGAGKSSILNALFR---LTPICGGQ 1280 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~r---l~~~~~G~ 1280 (1445)
=+|+|-||.||||||+...|.. +...++|.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGd 36 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 36 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEECHHH
T ss_conf 599978999879899999999996994787799
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=82.50 E-value=0.84 Score=18.64 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=32.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHH
Q ss_conf 5997999846566889997999999998727--9947998516913786
Q 000522 1374 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1420 (1445)
Q Consensus 1374 r~~~ILiLDEaTS~lD~~T~~~Iq~~I~~~f--~~~TvI~IaHrl~ti~ 1420 (1445)
.+..++++||.-.+-|++--..+-..+-+++ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.46 E-value=0.42 Score=21.00 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|..|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.36 E-value=0.85 Score=18.61 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 7999995899837899999863846887
Q 000522 638 SLVAVIGEVGSGKSSLLNSILGEMMLTH 665 (1445)
Q Consensus 638 ~l~~IvG~vGsGKSTLL~aiLGe~~~~~ 665 (1445)
....+.||.|+||+|+..++..++....
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~ 62 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLNCET 62 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 0598888998758999999999846855
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=82.35 E-value=0.43 Score=20.91 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 893999987999988899998834798987379997961
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1287 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~d 1287 (1445)
+-..+.+||+||+||||.+.=|...+.-..-+|.+=..|
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D 46 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 46 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 997999989999998999999999999779947998232
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.28 E-value=0.37 Score=21.46 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=5.3
Q ss_pred CEEEECCCCCC
Q ss_conf 99998088767
Q 000522 753 DIYMLDDVLSA 763 (1445)
Q Consensus 753 ~I~lLDDplSa 763 (1445)
.|+++||.=++
T Consensus 117 ~IIf~DEIdki 127 (309)
T d1ofha_ 117 GIVFIDEIDKI 127 (309)
T ss_dssp CEEEEECGGGG
T ss_pred CEEEEHHHHHH
T ss_conf 56884246454
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.27 E-value=0.73 Score=19.13 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 89399998799998889999883479898737
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1280 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~ 1280 (1445)
.|..|+|-|.-||||||++..|...++. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 7689999899888699999999999971-977
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.24 E-value=0.47 Score=20.65 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8939999879999888999988347
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
|.=.|||+|+.++|||||+..|+..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9719999947898499999999998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=82.19 E-value=0.82 Score=18.70 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=32.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 9858939999879999888999988347989873-79997961
Q 000522 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-QILVDGLN 1287 (1445)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G-~I~IdG~d 1287 (1445)
-+++|..+-|.|++||||||+..-+..-..-..| -+.||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.13 E-value=0.5 Score=20.40 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|+.|+|||||++.+++.
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992999999999719
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.12 E-value=0.5 Score=20.44 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.10 E-value=0.46 Score=20.68 Aligned_cols=137 Identities=13% Similarity=0.172 Sum_probs=65.7
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHC--CCCCCCCH
Q ss_conf 99998799998889999883---47989873799979617999927561241888277765675478723--97999992
Q 000522 1252 QVGIVGRTGAGKSSILNALF---RLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDD 1326 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~---rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~gTIR~NL--dp~~~~sd 1326 (1445)
.|||+|..|||||||+-+|+ +..+ ..|++. +|-.+.+...++..+.+++-+.-..+--..-+-|+ .|+...=-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH
T ss_conf 999995898998999999999648534-023365-184698565888751886001123431598389995278602269
Q ss_pred HHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 779999998138999995899405514999999349999999998625997999---84656688999799999999872
Q 000522 1327 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC---LDECTANVDAQTASILQNAISSE 1403 (1445)
Q Consensus 1327 ~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ILi---LDEaTS~lD~~T~~~Iq~~I~~~ 1403 (1445)
.+...+|..+.. --.|-+.....-.+-++..-.|+.. +-|.|+. ||-+-+..+ .+.+.|++.
T Consensus 86 ~e~~~~l~~~D~---------avlVvda~~Gv~~~T~~~w~~a~~~-~lP~i~fINKmDr~~ad~~-----~~l~ei~~~ 150 (276)
T d2bv3a2 86 IEVERSMRVLDG---------AIVVFDSSQGVEPQSETVWRQAEKY-KVPRIAFANKMDKTGADLW-----LVIRTMQER 150 (276)
T ss_dssp TTHHHHHHHCCE---------EEEEEETTTSSCHHHHHHHHHHHTT-TCCEEEEEECTTSTTCCHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHH---------EEEECCCCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCC-----HHHHHHHHH
T ss_conf 999999996300---------5773225677446699999999985-9997999864456543121-----268999998
Q ss_pred CC
Q ss_conf 79
Q 000522 1404 CK 1405 (1445)
Q Consensus 1404 f~ 1405 (1445)
+.
T Consensus 151 l~ 152 (276)
T d2bv3a2 151 LG 152 (276)
T ss_dssp TC
T ss_pred HC
T ss_conf 59
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=81.92 E-value=0.48 Score=20.54 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999988899998834798
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
.+.|.|..||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.91 E-value=0.49 Score=20.51 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++|+|++++|||||+.+|++.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999588980999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.79 E-value=0.49 Score=20.48 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
.++++||.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.71 E-value=0.51 Score=20.34 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++|+|+.|+|||||++.+.+.-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999996198
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=81.71 E-value=0.54 Score=20.18 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998889999883479
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
+|-|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=81.67 E-value=0.38 Score=21.35 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999958998378999998638468
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
+.+.||.|+||||+.+++.+|+..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898897998788899999998498
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.62 E-value=0.5 Score=20.45 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC-----CCCCCCE-----EEECCEEC
Q ss_conf 39999879999888999988347-----9898737-----99979617
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRL-----TPICGGQ-----ILVDGLNI 1288 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl-----~~~~~G~-----I~IdG~di 1288 (1445)
-||.++|..|+|||||++.+..- +.|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=81.58 E-value=0.57 Score=19.97 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899837899999863846
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
+++|.||.||||||..+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.55 E-value=0.6 Score=19.81 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999888999988347
Q 000522 1252 QVGIVGRTGAGKSSILNALFRL 1273 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl 1273 (1445)
||.++|..|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.47 E-value=0.56 Score=20.06 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|..|+|||||++.+++.-
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999939899999998299
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=81.41 E-value=0.43 Score=20.94 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|.|.+|||||+.+||.+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999378989899999999986
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.41 E-value=0.38 Score=21.33 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995899837899999863846
Q 000522 640 VAVIGEVGSGKSSLLNSILGEMM 662 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~~ 662 (1445)
..+.||.|+||||+.+++..++.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=81.40 E-value=0.52 Score=20.27 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999987999988899998834798987379997
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1284 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~Id 1284 (1445)
.|.++|..||||||+.+.|...+ |--.+|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.37 E-value=0.65 Score=19.53 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3200139985893999987999988899998834
Q 000522 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~r 1272 (1445)
.|.+ -|++|+.+-|.|++|+|||++...+..
T Consensus 29 ~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 29 LLGG---GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HTTS---SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3169---976897999988998878899999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=81.34 E-value=0.56 Score=20.05 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=81.31 E-value=0.52 Score=20.27 Aligned_cols=170 Identities=18% Similarity=0.215 Sum_probs=85.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCEEEECCCCC-CCCCCHHHHC--CCCCCCCH
Q ss_conf 99998799998889999883479--8987379997961799992756124188827776-5675478723--97999992
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFEGSLRDNL--DPFHMNDD 1326 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~--~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~-lF~gTIR~NL--dp~~~~sd 1326 (1445)
.|+|+|..|+|||||+-+|+... ....|++. +|....+...++-.+.+++-+.-.. .+.| .+-|+ .|++..=-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7799999981389999958994055149999993499999999986259979998---4656688999799999999872
Q 000522 1327 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL---DECTANVDAQTASILQNAISSE 1403 (1445)
Q Consensus 1327 ~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS~GQrQll~LARAlLr~~~ILiL---DEaTS~lD~~T~~~Iq~~I~~~ 1403 (1445)
.+...++..+... -.|-+.......+-++.+-.|+.. +.|.++++ |.+ + |.. +. .+.+++.
T Consensus 82 ~e~~~al~~~D~a---------vlvvda~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~-~--~~~--~~-l~~~~~~ 145 (267)
T d2dy1a2 82 GEIRGALEAADAA---------LVAVSAEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG-G--DYY--AL-LEDLRST 145 (267)
T ss_dssp HHHHHHHHHCSEE---------EEEEETTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC-C--CHH--HH-HHHHHHH
T ss_pred HHHHHHHCCCCCE---------EEEEECCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC-C--CCH--HH-HHHHHHH
T ss_conf 5565431246733---------898423577421157887765540-44310133320222-2--101--23-4468887
Q ss_pred CCCCEEEEECC----CHHHHHH--CCEEEEEECCEEEEECCC
Q ss_conf 79947998516----9137865--197999939748310279
Q 000522 1404 CKGMTVITIAH----RISTVLN--MDEILILDHGHLPHCGCA 1439 (1445)
Q Consensus 1404 f~~~TvI~IaH----rl~ti~~--~D~I~vl~~G~ivE~g~p 1439 (1445)
+..+.-+.+-. ....+.| ..+.+..++|.-.+..-|
T Consensus 146 lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip 187 (267)
T d2dy1a2 146 LGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVP 187 (267)
T ss_dssp HCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCC
T ss_pred HCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECC
T ss_conf 465867686002588326876247654899618987454077
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.28 E-value=0.72 Score=19.16 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=25.0
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 320013998589399998799998889999883
Q 000522 1239 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1271 (1445)
Q Consensus 1239 vL~~isl~I~~GekvgIvGrTGSGKSTL~~~L~ 1271 (1445)
.|.| -+++|+.+-|.|++||||||+..-+.
T Consensus 28 ll~G---Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 28 LLGG---GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp HHTS---SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 4269---95588799998589898899999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.24 E-value=0.64 Score=19.58 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=25.3
Q ss_pred EEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 110268509979999958998378999998638468
Q 000522 628 NQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 663 (1445)
Q Consensus 628 ~~i~l~i~~G~l~~IvG~vGsGKSTLL~aiLGe~~~ 663 (1445)
+...+..++| +.+.||.|||||++.+++..+...
T Consensus 31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~~~ 64 (258)
T d1e32a2 31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANETGA 64 (258)
T ss_dssp HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHCCCCCCCE--EEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 8679998864--687669988830899999987488
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.21 E-value=0.57 Score=19.99 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998799998889999883479
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
|=-.|+|+|+.++|||+|++.|++..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.20 E-value=0.57 Score=19.99 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.19 E-value=0.63 Score=19.65 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999987999988899998834798
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
.|..|.|-|.-||||||++..|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.14 E-value=0.42 Score=21.01 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589983789999986384
Q 000522 640 VAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
++++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.14 E-value=0.62 Score=19.68 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799998889999883479
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
||.++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.10 E-value=0.31 Score=22.11 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC
Q ss_conf 9999879999888999988347989873799979617999927561241888277765
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1309 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~IpQdp~l 1309 (1445)
.|||+|.|||||||+.+.|...+.. .| -..++|+||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~-~~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR-EG------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH-HT------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC------------------CCEEEEECCCCC
T ss_conf 9999899978099999999999715-69------------------976999477787
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.10 E-value=0.34 Score=21.74 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|..|+|||||++.+++.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.09 E-value=0.58 Score=19.94 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.02 E-value=0.58 Score=19.90 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89399998799998889999883479
Q 000522 1249 GGTQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1249 ~GekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
.+..+.|.|+.|+|||||+..+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.84 E-value=0.59 Score=19.83 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999987999988899998834
Q 000522 1251 TQVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~r 1272 (1445)
=||.++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.75 E-value=0.77 Score=18.92 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 985893999987999988899998834
Q 000522 1246 TIEGGTQVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTL~~~L~r 1272 (1445)
-+++|+.+-|.|++|+|||++..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=80.71 E-value=0.52 Score=20.31 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998799998889999883479
Q 000522 1251 TQVGIVGRTGAGKSSILNALFRLT 1274 (1445)
Q Consensus 1251 ekvgIvGrTGSGKSTL~~~L~rl~ 1274 (1445)
+.|-++|..||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.53 E-value=0.61 Score=19.74 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++|+|..|+|||||++.++..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.48 E-value=0.57 Score=19.95 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.44 E-value=0.83 Score=18.69 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999988899998834
Q 000522 1252 QVGIVGRTGAGKSSILNALFR 1272 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~r 1272 (1445)
||.++|..|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.39 E-value=0.68 Score=19.35 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589983789999986384
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEM 661 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~ 661 (1445)
-++|.||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=80.39 E-value=0.4 Score=21.23 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 99999589983789999986384688708
Q 000522 639 LVAVIGEVGSGKSSLLNSILGEMMLTHGS 667 (1445)
Q Consensus 639 l~~IvG~vGsGKSTLL~aiLGe~~~~~G~ 667 (1445)
-+.|+|++|||||+++..++-+.-...+.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~ 80 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDR 80 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 58999079996899999999999847998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=80.34 E-value=0.69 Score=19.32 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEE
Q ss_conf 99998799998889999883---4798987379
Q 000522 1252 QVGIVGRTGAGKSSILNALF---RLTPICGGQI 1281 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~---rl~~~~~G~I 1281 (1445)
.|+|-||.||||+|+...|. ++...+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 899779998898999999999969908988899
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.26 E-value=0.65 Score=19.50 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958998378999998638
Q 000522 640 VAVIGEVGSGKSSLLNSILGE 660 (1445)
Q Consensus 640 ~~IvG~vGsGKSTLL~aiLGe 660 (1445)
++++|..|+|||||++.++++
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
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| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.25 E-value=0.61 Score=19.73 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999988899998834798
Q 000522 1252 QVGIVGRTGAGKSSILNALFRLTP 1275 (1445)
Q Consensus 1252 kvgIvGrTGSGKSTL~~~L~rl~~ 1275 (1445)
+|.++|..||||||+.+.|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
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| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.19 E-value=0.71 Score=19.21 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=47.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 98589399998799998889999883479898737-99979617999927561241888277765675478723979999
Q 000522 1246 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ-ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1324 (1445)
Q Consensus 1246 ~I~~GekvgIvGrTGSGKSTL~~~L~rl~~~~~G~-I~IdG~di~~i~~~~lR~~i~~IpQdp~lF~gTIR~NLdp~~~~ 1324 (1445)
-++.|..+-+.|++|+||||+..-+.....-..|. |.||... .++.+.+++ +++=+ +|+-.....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~GvD~-----------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGVDT-----------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTCCG-----------GGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHH-HCCCH-----------HHEEEECCC
T ss_conf 8666336999648874889999999998754898899998976--679999998-09988-----------995896699
Q ss_pred CHHHHHHHHH
Q ss_conf 9277999999
Q 000522 1325 DDLKIWSVLE 1334 (1445)
Q Consensus 1325 sd~ei~~aL~ 1334 (1445)
+.|++.+.++
T Consensus 122 ~~E~~~~~~~ 131 (269)
T d1mo6a1 122 TGEQALEIAD 131 (269)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 8999999999
|