Citrus Sinensis ID: 000523
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1445 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.977 | 0.985 | 0.728 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.982 | 0.997 | 0.690 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.978 | 0.984 | 0.712 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.984 | 0.975 | 0.696 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.975 | 0.696 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.986 | 0.987 | 0.687 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.985 | 0.982 | 0.682 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.984 | 0.971 | 0.693 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.987 | 0.694 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.971 | 0.956 | 0.685 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2190 bits (5675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1045/1434 (72%), Positives = 1210/1434 (84%), Gaps = 21/1434 (1%)
Query: 13 SLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEV 71
SLR S S W N + FSRSSR+EDDEEALKWAALEKLPT++RLRKG+L S+G A EV
Sbjct: 21 SLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEV 80
Query: 72 DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAF 131
D+ +LG QER+ L+++LVKV D DNE+FLLKLKNRIDRVGIDLP +EVRYEHLN++A+A+
Sbjct: 81 DINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAY 140
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191
+ S +LP+F+ F TN E +LN L I+ S+KR LTILKD+SG+IKP R+TLLLGPPSSGK
Sbjct: 141 VGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGK 200
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLDP LKV+G V+YNGH++ EFVPQRTAAYISQHD HIGEMTVRETL FSA
Sbjct: 201 TTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSA 260
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVG+R+EML EL+RREKAA IKPD DID+YMKA ATEGQEANV+TDY LK+LGLD+C
Sbjct: 261 RCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDIC 320
Query: 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
ADTMVGD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LRQ++
Sbjct: 321 ADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQ 380
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431
I GTAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+ VLEFF SMGF+CP+RKGVAD
Sbjct: 381 ILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVAD 440
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTS+KDQ+QYW+ + +PYRF+T +EFAEA+QSFHVG+K+ DEL TPFDK+K H AA
Sbjct: 441 FLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAA 500
Query: 492 LTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551
LT E YG+GK+ELLK RELLLMKRNSFVY+FK Q+ +A++ MTLF RT+M +DT
Sbjct: 501 LTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTT 560
Query: 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
DGGI+AGA FF + M+ FNG SE++MTI KLPVFYKQRD FFP WAYAIPSWILKIPV
Sbjct: 561 DDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPV 620
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
+ +EV +WV L+YYV+G+D N RF KQ+ LL+ VNQMAS +FRFI GR M VA+TFG
Sbjct: 621 TLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFG 680
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
SFALL+ +LGGF+LSR+D+K WW W YW SP+ Y+ N+I+ NEF G W +ET
Sbjct: 681 SFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNET 740
Query: 732 LGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791
LG V+KSRGFF YWYW+G+GAL GF ++ NF Y+LAL +L+PF+KP+AV+ E+ E+
Sbjct: 741 LGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENA 800
Query: 792 EQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDE 851
E N ++S+ STD G S S+ S+ KKGMVLPFEPHS+TFD+
Sbjct: 801 E-------NGEVSSQITSTD---GGDSISE---------SQNNKKGMVLPFEPHSITFDD 841
Query: 852 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 911
VVYSVDMP+EMK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 842 VVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 901
Query: 912 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 971
GYI G I ISGYPKKQETFARISGYCEQNDIHSP+VT+YESL++SAWLRL +VD +TRK
Sbjct: 902 GYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRK 961
Query: 972 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
MF+DEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 962 MFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1021
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 1091
RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL
Sbjct: 1022 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 1081
Query: 1092 ISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 1151
I YFE+ PGV KIK+GYNPATWMLEV+A++QE+ LGIDFTE YK SDLYRRNKALI +L
Sbjct: 1082 IKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELG 1141
Query: 1152 RPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW 1211
P PGSKDL+F TQ+SQS W Q VACLWKQHWSYWRNP YTAVRF FT FIAL+FG++FW
Sbjct: 1142 VPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFW 1201
Query: 1212 DLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWA 1271
DLG + ++QDL NAMGSM+ AVLFLGVQ SSVQP+V++ERTVFYRE+AAGMY+ IP+A
Sbjct: 1202 DLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYA 1261
Query: 1272 LAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALT 1331
QV IEIPYI VQSV YG IVYAMIGFEW KFFWY+F M+FTLL+FTFYGMM VA+T
Sbjct: 1262 FGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVT 1321
Query: 1332 PNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD 1391
PN ++A+IV+ FYG+WN+FSGFIIPRPR+P+WWRWYYWANP+AWTLYGLVASQFGD+
Sbjct: 1322 PNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQT 1381
Query: 1392 KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445
K D ETV+QFL+ YF FKHDFLGVVAAVL + +F F FA IK FNFQRR
Sbjct: 1382 KLSDN-ETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2127 bits (5512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1000/1448 (69%), Positives = 1203/1448 (83%), Gaps = 28/1448 (1%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNS-IGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEGT AS S+RR++S W +S FSRSSREEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 ILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
ILT S G NE+D+ LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVR++HL VEAE + ALP+F+ F +N + LN L ++P++K+ TIL DVSG++KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
GR+ LLLGPPSSGKTTLLLALAGKLD LK +G VTYNGH M+EFVPQRTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCADTMVGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TT+QIVN LR +HI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
+MGF+CP RKGVADFLQEVTS+KDQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L PFDK+KSH AALTT+ YGVG +EL+K + SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K T DG ++ GA FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
W Y++P W+LKIP+SF+E A+ F++YYV+G+D N GR FKQY LL+ +NQMASALF+ +
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VANTFG+FA+LV +LGG +LSR+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
GHSW + ++SSETLGV LKSRGF H YWYW+G GAL GFV+L NF +TLALTFL+
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKG 837
KP+AVI EE S+E + S++S + EA A+ KK+G
Sbjct: 780 GKPQAVIAEEPASDET----------------------ELQSARSEGVVEAGAN--KKRG 815
Query: 838 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
MVLPFEPHS+TFD VVYSVDMP+EM QG ED+LVLL GV+GAFRPGVLTALMGVSGAG
Sbjct: 816 MVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAG 875
Query: 898 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 957
KTTLMDVLAGRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VT+YESL++SA
Sbjct: 876 KTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSA 935
Query: 958 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRL EVD RK+FI+EVMELVEL PLRQ+LVGLPG SGLSTEQRKRLTIAVELVANP
Sbjct: 936 WLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANP 995
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG+
Sbjct: 996 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGE 1055
Query: 1078 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRS 1137
EIYVGPLG S HLI+YFE+I G+ KI +GYNPATWMLEVS SQE ALG+DF + YK S
Sbjct: 1056 EIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNS 1115
Query: 1138 DLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFF 1197
+LY+RNK LI++LS+P PGSKDLYFPTQ+SQS Q +A LWKQHWSYWRNPPYTAVRF
Sbjct: 1116 ELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFL 1175
Query: 1198 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 1257
FT IAL+FG++FWDLGG+TK QDL NAMGSM+TAVLFLG+Q +SVQP+V+VERTVFY
Sbjct: 1176 FTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFY 1235
Query: 1258 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTL 1317
RE+AAGMY+ +P+A AQV IEIPY+LVQ++VYG IVYAMIGFEWTA KFFWY+FFMY +
Sbjct: 1236 REQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSF 1295
Query: 1318 LFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWT 1377
L FTFYGMMAVA+TPNHHIA++VS+ FYG+WN+FSGF+IPRP +P+WW WYYW P+AWT
Sbjct: 1296 LTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWT 1355
Query: 1378 LYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGI 1437
LYGL+ASQFGD+ + D+ +VKQF+++++ ++ FLGVVAA+ V+F +LF +FA+GI
Sbjct: 1356 LYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGI 1415
Query: 1438 KMFNFQRR 1445
K FNFQ+R
Sbjct: 1416 KSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2074 bits (5373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1025/1438 (71%), Positives = 1205/1438 (83%), Gaps = 24/1438 (1%)
Query: 9 MASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEA 68
M + S S W N FSRS+R+EDDEEALKWAALEKLPTY+RLRKGIL S+G A
Sbjct: 22 MRGSIRENSNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAA 81
Query: 69 NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEA 128
EVDV + G+ ER+ L+++LVKV D DNE+FLLKLKNRIDRVGID P +EVR+EHLN++A
Sbjct: 82 AEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDA 141
Query: 129 EAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPS 188
+A++ S ALP+F F +N E +L+ + I+PSKKR +TILKDVSG++KP R+TLLLGPP
Sbjct: 142 DAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPG 201
Query: 189 SGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLD LKV+G VTYNGH++ EFVPQRTAAYISQHD HIGEMTVRETL
Sbjct: 202 SGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLE 261
Query: 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308
FSARCQGVG+RYEML EL+RREKAA IKPD DID++MKA +TEGQEA V+TDY LK+LGL
Sbjct: 262 FSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGL 321
Query: 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
D+CADTMVGD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN L+Q
Sbjct: 322 DICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQ 381
Query: 369 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKG 428
++ I GTA+ISLLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFF SMGF+CP+RKG
Sbjct: 382 SVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKG 441
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSH 488
ADFLQEVTS+KDQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKSH
Sbjct: 442 AADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSH 501
Query: 489 RAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548
AALTT+ YG+GKR+LLK RELLLM+RNSFVY+FK Q+ +A++ MT+F RTKM +
Sbjct: 502 PAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPR 561
Query: 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILK 608
D+ DGGI++GA FF + M+ FNG SE+ MT+ KLPVFYKQRDF F+P WAYAIPSWILK
Sbjct: 562 DSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILK 621
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
IPV+F EV +WVFL+YYV+G+D N GRFFKQ+ LLL VNQMASALFRFIA GR M VA+
Sbjct: 622 IPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVAS 681
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS 728
TFG+FALL+ +LGGFIL+R D+K WW W YW SPL Y+ NAI+ NEF G WK
Sbjct: 682 TFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGG 741
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
+E LG V+++RGFF YWYW+G+GAL GF+++ N AY++AL +L+PF+KP+A I++E
Sbjct: 742 TEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDES 801
Query: 789 ESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAE-ASRPKKKGMVLPFEPHSL 847
E+NE +SS Q S E + AS KKKGMVLPF+PHS+
Sbjct: 802 ENNE-----------------------SESSPQITSTQEGDSASENKKKGMVLPFDPHSI 838
Query: 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907
TFDEVVYSVDMP EM+ G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLAG
Sbjct: 839 TFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 898
Query: 908 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 967
RKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VT++ESL++SAWLRL +V+
Sbjct: 899 RKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNE 958
Query: 968 ETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027
E R MF++EVM+LVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 959 EKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1018
Query: 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 1087
GLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR
Sbjct: 1019 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQ 1078
Query: 1088 SCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALI 1147
SCHLI YFE+IPGV KI +GYNPATWMLEV+A+SQE+ALG+DFT+ YK+SDLYRRNKALI
Sbjct: 1079 SCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALI 1138
Query: 1148 EDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFG 1207
++LS P PG+ DL+F ++FSQ W Q +ACLWKQHWSYWRNP YTAVR FT FIAL+FG
Sbjct: 1139 DELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFG 1198
Query: 1208 SLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAG 1267
++FWD+G + RNQDL NAMGSM+ AVLFLGVQ SSVQP+VSVERTVFYREKAAGMY+
Sbjct: 1199 TMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSA 1258
Query: 1268 IPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMA 1327
IP+A AQV+IEIPYI VQ+ VYG IVY+MIGFEWT AKFFW FFM+FT L+FTF+GMM
Sbjct: 1259 IPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMT 1318
Query: 1328 VALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFG 1387
VA+TPN ++A+IV+ FY +WN+FSGFI+PRPRIPIWWRWYYW PIAWTLYGLVASQFG
Sbjct: 1319 VAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFG 1378
Query: 1388 DMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445
D+ D D +TV+QFL+ F FKHDFLGVVAAV+V FAV+F F FALGIK FNFQRR
Sbjct: 1379 DLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2071 bits (5365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1005/1442 (69%), Positives = 1177/1442 (81%), Gaps = 20/1442 (1%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL-------TTSRGEAN 69
S S W FSRSSREEDDEEAL+WAALEKLPTY+R+R+ IL G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAE 129
VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189
+ ++ LP+ + TN E+ N L I+P++K+ + +L DVSG+IKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG VTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369
+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV 429
+HI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF SMGF+CP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGV 441
Query: 430 ADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHR 489
ADFLQEVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549
AAL T YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
+VT GGI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANT 669
P++F+EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS 729
F SF LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEE 787
ETLGVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 IESNEQ----DDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 843
E E+ + I G+V LS+ GST G + + S + + + ++GMVLPF
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTENDSTIV--DDDTEVTQRGMVLPFT 856
Query: 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 857 PLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 916
Query: 904 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 963
VLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLLFSAWLRL
Sbjct: 917 VLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPE 976
Query: 964 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+VDS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 977 DVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1036
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
EPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY GP
Sbjct: 1037 EPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGP 1096
Query: 1084 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 1143
LG HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ YK+S+LY+RN
Sbjct: 1097 LGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRN 1156
Query: 1144 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 1203
KALI+DLS+P P S DLYFPTQ+SQSS Q +ACLWKQ+ SYWRNPPY AVRFFFT IA
Sbjct: 1157 KALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIA 1216
Query: 1204 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 1263
LLFG++FWDLGG+ ++QDLFNAMGSM+ AVLF+GV C+SVQP+V+VERTVFYRE+AAG
Sbjct: 1217 LLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAG 1276
Query: 1264 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1323
MY+ P+A QV+IEIPY LVQ+ VYG IVYAMIGFEWTAAKFFWY+FFM FTLL+FTFY
Sbjct: 1277 MYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFY 1336
Query: 1324 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1383
GMMAV LTPN+HIA+IVS+ FY +WN+FSGF+IPRPR+PIWWRWY WA P+AWTLYGLV
Sbjct: 1337 GMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVV 1396
Query: 1384 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1443
SQFGD+ + M+ G VK F+++YF FKH +LG VA V+ FA LF LF I FNFQ
Sbjct: 1397 SQFGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQ 1455
Query: 1444 RR 1445
+R
Sbjct: 1456 KR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2067 bits (5356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1004/1442 (69%), Positives = 1176/1442 (81%), Gaps = 20/1442 (1%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL-------TTSRGEAN 69
S S W FSRSSREEDDEEAL+WAALEKLPTY+R+R+ IL G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAE 129
VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189
+ ++ LP+ + TN E+ N L I+P++K+ + +L DVSG+IKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG VTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369
+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV 429
+HI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF S GF+CP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGV 441
Query: 430 ADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHR 489
ADFLQEVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549
AAL T YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
+VT GGI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANT 669
P++F+EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS 729
F SF LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEE 787
ETLGVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 IESNEQ----DDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFE 843
E E+ + I G+V LS+ GST G + + S + + + ++GMVLPF
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTENDSTIV--DDDTEVTQRGMVLPFT 856
Query: 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 857 PLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 916
Query: 904 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 963
VLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLLFSAWLRL
Sbjct: 917 VLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPE 976
Query: 964 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+VDS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 977 DVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1036
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
EPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY GP
Sbjct: 1037 EPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGP 1096
Query: 1084 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 1143
LG HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ YK+S+LY+RN
Sbjct: 1097 LGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRN 1156
Query: 1144 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 1203
KALI+DLS+P P S DLYFPTQ+SQSS Q +ACLWKQ+ SYWRNPPY AVRFFFT IA
Sbjct: 1157 KALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIA 1216
Query: 1204 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 1263
LLFG++FWDLGG+ ++QDLFNAMGSM+ AVLF+GV C+SVQP+V+VERTVFYRE+AAG
Sbjct: 1217 LLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAG 1276
Query: 1264 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1323
MY+ P+A QV+IEIPY LVQ+ VYG IVYAMIGFEWTAAKFFWY+FFM FTLL+FTFY
Sbjct: 1277 MYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFY 1336
Query: 1324 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1383
GMMAV LTPN+HIA+IVS+ FY +WN+FSGF+IPRPR+PIWWRWY WA P+AWTLYGLV
Sbjct: 1337 GMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVV 1396
Query: 1384 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1443
SQFGD+ + M+ G VK F+++YF FKH +LG VA V+ FA LF LF I FNFQ
Sbjct: 1397 SQFGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQ 1455
Query: 1444 RR 1445
+R
Sbjct: 1456 KR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2048 bits (5305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 988/1437 (68%), Positives = 1194/1437 (83%), Gaps = 11/1437 (0%)
Query: 13 SLRRSASRWNTNS--IGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANE 70
S+RR+AS W S AF RS REEDDEEALKWAA+EKLPTY+R+RKGILT G E
Sbjct: 15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEE 72
Query: 71 VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA 130
VD+ LGLQER+ LI++LV+ + DNERFLLKL++R++RVGID P +EVR+E+L+++AEA
Sbjct: 73 VDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEA 132
Query: 131 FLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSG 190
++ + +P+F F++N D+L+ +RI+ S KR ++IL D+SG+I+PGR++LLLGPP SG
Sbjct: 133 YVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSG 192
Query: 191 KTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250
KT+LLLALAGKLD TLKVSG VTYNGHDMDEFVPQRT+AYI QHD HIGEMTVRETLAFS
Sbjct: 193 KTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFS 252
Query: 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV 310
ARCQGVGTRY+MLTEL+RREK A IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGL++
Sbjct: 253 ARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEI 311
Query: 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370
CADTMVGD MIRGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ++
Sbjct: 312 CADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSV 371
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVA 430
HI GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFF +MGF+CP+RKGVA
Sbjct: 372 HILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVA 431
Query: 431 DFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRA 490
DFLQEVTSRKDQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H A
Sbjct: 432 DFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPA 491
Query: 491 ALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDT 550
ALTT YG+ K EL KA SRE LLMKRNSFVYIFK++Q+ + + MT+FLRTKMH+ +
Sbjct: 492 ALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRS 551
Query: 551 VTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIP 610
V DG IF GA F + FNGF+E++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP
Sbjct: 552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIP 611
Query: 611 VSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTF 670
+SFLE AVW+ ++YYV+G+D N RFF+ Y LL+ ++QMAS LFR +A GR MVVA+TF
Sbjct: 612 ISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTF 671
Query: 671 GSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DS 728
GSFA L+LL LGGF++SRE+IKKWW W YW SPL YAQNAI NEFLGHSW K S
Sbjct: 672 GSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQS 731
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
++TLGVQVLK RG F WYW+G+GAL G+++L N + L L +LDP K +AV++EE
Sbjct: 732 NDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEE 791
Query: 789 ESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLT 848
+ +R G NV+L TLG + + S + E + +K+GMVLPF P S+T
Sbjct: 792 LREKHVNRTGENVELLTLGTDSQN----SPSDANAGRGEITGADTRKRGMVLPFTPLSIT 847
Query: 849 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 908
FD + YSVDMP+EMK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 848 FDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 907
Query: 909 KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 968
KTGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VT+YESLL+SAWLRL EVDSE
Sbjct: 908 KTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSE 967
Query: 969 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
RKMF++EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 968 ARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1027
Query: 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1088
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG +S
Sbjct: 1028 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNS 1087
Query: 1089 CHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIE 1148
CHLI+YFE I GV+KIKDGYNPATWMLEV+ +QE LGI+F E Y+ SDLY+RNK LI
Sbjct: 1088 CHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLIS 1147
Query: 1149 DLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGS 1208
+LS PPPGS DL+FPTQFSQ + Q +ACLWKQH SYWRNP YTA R FFT IAL+FG+
Sbjct: 1148 ELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGT 1207
Query: 1209 LFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGI 1268
+F +LG + + DLFN++GSM+ AVLF+G+Q +VQPIV VERTVFYREKAAGMY+ +
Sbjct: 1208 IFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSAL 1267
Query: 1269 PWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAV 1328
P+A AQV+IEIP+I +Q+VVYG IVY++IGF+WT KFFWY+FFM+FT ++FTFYGMMAV
Sbjct: 1268 PYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAV 1327
Query: 1329 ALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGD 1388
A+TPN IAAIVST FY +WN+F+GF+IPRPRIPIWWRWY WA P+AWTLYGLVASQ+GD
Sbjct: 1328 AMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGD 1387
Query: 1389 MDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445
+ + ++ GE V+ +++ YF F+HD+LG VA +V FA LF F+FA IK+FNFQRR
Sbjct: 1388 ITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2039 bits (5282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 989/1450 (68%), Positives = 1169/1450 (80%), Gaps = 26/1450 (1%)
Query: 13 SLRRSASRWNTNSIGAFSRSSR----EEDDEEALKWAALEKLPTYNRLRKGILTTSR--- 65
SLRR S W + FSRSS E+DDEEAL+WAALE+LPTY+R+R+GIL S
Sbjct: 10 SLRREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 66 ---GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
GE EVDV LG +E + LI++LV+ D D+ERFLLKL+ R+DRVGID P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
+L VEA+ + + LP+ + TN E I N L I+P+KK+ +T+L DVSG+IKP R+TL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPP SGKTTLLLALAGKLD LKVSG VTYNGH M EFVP+RTAAYISQHD HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVGTRYEMLTELARREKAA IKPD DID+YMKA A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADT+VG+EM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VN LRQ IHI GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFF MGFR
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP RKGVADFLQEVTSRKDQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
D+++SH AAL T YGV ++ELLKA I RELLLMKRN+F+YIFK + + +A++ MT F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT M D G I+ GA +FA+ V FNGF+E++MT+ KLPVF+KQRD FFP WAY I
Sbjct: 549 RTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
PSWIL+IP++FLEV V+VF++YYV+G+D + RFFKQY LLL +NQM+SALFRFIA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
+MVV++TFG +LL +LGGFIL+R D+KKWW W YW SPL+YAQNAI NEFLGHSW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
+ + TLGV VLKSRG F WYW+GLGAL G+ LL N YT+AL+ L PF A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQ-------SSSQSLSLAEAEASRPKK 835
++E+ + + G V+ G R Q+ + ++ A++ ASR
Sbjct: 788 SMSEDALKEKHANLTGEVVE----GQKDTKSRKQELELSHIADQNSGINSADSSASR--- 840
Query: 836 KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 895
KGMVLPF P S++F++V YSVDMPE MK QG+ ED+L+LL GVSG+FRPGVLTALMGVSG
Sbjct: 841 KGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSG 900
Query: 896 AGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 955
AGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YESL+F
Sbjct: 901 AGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVF 960
Query: 956 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1015
SAWLRL EVDSE RKMFI+EVM+LVEL LR +LVGLPGVSGLSTEQRKRLTIAVELVA
Sbjct: 961 SAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVA 1020
Query: 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
NPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRG
Sbjct: 1021 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1080
Query: 1076 GQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYK 1135
G+EIYVGP+G++S LI YFE I GV +IKDGYNPATWMLEV++++QE LG+DF+E Y+
Sbjct: 1081 GEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYR 1140
Query: 1136 RSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVR 1195
+S+LY+RNK LIE+LS PPPGS DL FPTQ+S+S Q +ACLWKQ+WSYWRNP YTAVR
Sbjct: 1141 QSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVR 1200
Query: 1196 FFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTV 1255
FT IAL+FG++FW+LG RTK+ QDLFNAMGSM+ AVL++GVQ SVQP+V VERTV
Sbjct: 1201 LLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTV 1260
Query: 1256 FYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYF 1315
FYRE+AAGMY+ P+A QV IE+PYI+VQ+++YG +VY+MIGFEWT AKF WY+FFMYF
Sbjct: 1261 FYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYF 1320
Query: 1316 TLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIA 1375
TLL+FTFYGMMAV LTPN IAAI+S+ FY +WN+FSG++IPRP+IP+WWRWY W P+A
Sbjct: 1321 TLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVA 1380
Query: 1376 WTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFAL 1435
WTLYGLVASQFGD+ TV QF+ DYF F H+FL VVA V VVFAV F FLF+
Sbjct: 1381 WTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSF 1440
Query: 1436 GIKMFNFQRR 1445
I FNFQRR
Sbjct: 1441 AIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2036 bits (5276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1003/1447 (69%), Positives = 1178/1447 (81%), Gaps = 25/1447 (1%)
Query: 17 SASRWNTNSIGAFSRSSRE------EDDEEALKWAALEKLPTYNRLRKGILTT------- 63
+AS W + G FSRS EDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 64 SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEH 123
VDV +LG QER+ L+++LV+V + DNERFLLKLK RIDRVGID+P +EVR+EH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 124 LNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLL 183
L EAE + ++ LP+ + TN E N L I+P+KK+ + IL DVSG++KP R+TLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 184 LGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243
LGPP SGKTTLLLALAG+L +K SG VTYNGH M++FVPQRTAAYISQHD HIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303
RETL+FSARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A EGQE N+ITDY L
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 304 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLD+CADTMVGD+M+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 364 NCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRC 423
LRQ IHI GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFF MGF+C
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 424 PKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFD 483
P+RKGVADFLQEVTSRKDQ+QYW +KPYR+V V++FA AFQSFH G+ I++EL TPFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 484 KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLR 543
KSK+H AALTT YGV ELLKANI RE LLMKRNSFVYIF+ Q+ V+ + MT+F R
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFR 564
Query: 544 TKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIP 603
TKMH+D+VTDG IF GA FF++ M+ FNG SE+ +TI KLPVF+KQRD FFP W Y IP
Sbjct: 565 TKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIP 624
Query: 604 SWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663
SWILKIP+SF+EV +VF+SYYV+G+D +AGRFFKQY L+L +NQMA+ALFRF+ RN
Sbjct: 625 SWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARN 684
Query: 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKK 723
M+VAN FGSF LL+ + LGGFIL RE +KKWW W YW SP+ YAQNAI NEFLGHSW K
Sbjct: 685 MIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDK 744
Query: 724 FTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781
+ S+ETLGVQ L+SRG F WYW+G GAL GF++L N +TLALT+L P+ K +
Sbjct: 745 VLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQ 804
Query: 782 AVITEEIESNEQDDRIGGNV-QLSTLGGSTD--DIRGQQSSSQSLSLAEAEASRPKKKGM 838
++EE E E+ I GNV + T+ ST+ + ++SS+ A+ S+P ++GM
Sbjct: 805 PSVSEE-ELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEI-----ADNSQPTQRGM 858
Query: 839 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 898
VLPF P SLTFD + YSVDMP+EMK G++ED+L LL GVSG+FRPGVLTALMGVSGAGK
Sbjct: 859 VLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGK 918
Query: 899 TTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 958
TTLMDVLAGRKTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAW
Sbjct: 919 TTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAW 978
Query: 959 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1018
LRL +VDS TRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPS
Sbjct: 979 LRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPS 1038
Query: 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078
IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E
Sbjct: 1039 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEE 1098
Query: 1079 IYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSD 1138
IYVGPLG S LI YFE I GV +IKDGYNPATWMLEVS SQE ALG+DF + Y++S+
Sbjct: 1099 IYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSE 1158
Query: 1139 LYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFF 1198
L++RNKALI++LS PPPGS +LYFPT++S S Q +ACLWK H SYWRNPPY A+R FF
Sbjct: 1159 LFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFF 1218
Query: 1199 TAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYR 1258
T IALLFG++FWDLGG+T ++QDLFNAMGSM++AVLF+GV SVQP+VSVERTVFYR
Sbjct: 1219 TTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYR 1278
Query: 1259 EKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLL 1318
E+AAGMY+ P+A QV IE PY LVQS++YG IVY+MIGF+WTAAKFFWY+FFM+FT L
Sbjct: 1279 ERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFL 1338
Query: 1319 FFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTL 1378
+FTFYGMMAV LTP++H+A+IVS+ FYG+WN+FSGFIIPRP++PIWWRWY W P+AWTL
Sbjct: 1339 YFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTL 1398
Query: 1379 YGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIK 1438
YGLVASQFGD+ MD G VK F+++YFDFKH +LGVVA V+V F +LF FLF I
Sbjct: 1399 YGLVASQFGDI-MTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIM 1457
Query: 1439 MFNFQRR 1445
NFQ+R
Sbjct: 1458 KLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2026 bits (5248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 996/1434 (69%), Positives = 1181/1434 (82%), Gaps = 11/1434 (0%)
Query: 13 SLRRSASRWNTNSIG-AFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEV 71
SLRRS S W + S F RSSREEDDEEALKWAALEKLPTY+RLRKGI+T GE EV
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAF 131
D+ LG QER+ L++KLV+ + DNERFLLKL+NR++RVGID P +EVR+EHLN+ AEAF
Sbjct: 78 DIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAF 137
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191
+ + +P+ + F+ N IL+ L ++PS KR ++IL DVSG+IKP R+TLLLGPP +GK
Sbjct: 138 VGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGK 197
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLD TLKV+G VTYNGH M EFVPQRT+AYISQHD HIGEMTVRETLAFS+
Sbjct: 198 TTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSS 257
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVGTRYEMLTEL+RREK A IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGLD+C
Sbjct: 258 RCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDIC 316
Query: 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
ADTMVGD MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN LRQ++H
Sbjct: 317 ADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVH 376
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431
I GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFF SMGF+CP+RKGVAD
Sbjct: 377 ILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVAD 436
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTSRKDQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AA
Sbjct: 437 FLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAA 496
Query: 492 LTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551
LTT YG+ K ELLKA I RE LLMKRNSFVYIFK++Q+ +A++ MT+F RTK+ ++ +
Sbjct: 497 LTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGL 556
Query: 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
D IF GA F + FNGF+E++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIP+
Sbjct: 557 EDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPI 616
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
SF+E VW+ ++YYV+G+D N R F+ Y LL+ ++Q+AS LFR +A GR+MVVA+TFG
Sbjct: 617 SFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFG 676
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
+FA LVLL LGGFI++RE IKK+W W YW SPL YAQNAI NEFLGHSW K + +T
Sbjct: 677 AFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQT 736
Query: 732 LGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791
LG + L++RG F + WYW+G+GAL G+++L NF + L L +LDP K + ++EE
Sbjct: 737 LGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQE 796
Query: 792 EQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDE 851
++ +R G NV+L+T RG ++S S+ E +KKGMVLPF P S+TFD
Sbjct: 797 KEANRTGANVELAT--------RGSAATSDGGSV-EIRKDGNRKKGMVLPFTPLSITFDN 847
Query: 852 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 911
V YSVDMP+EMK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTG
Sbjct: 848 VKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTG 907
Query: 912 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 971
GYI G+I ISGYPK QETFARISGYCEQNDIHSP VT+YESLL+SAWLRL EVD + RK
Sbjct: 908 GYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRK 967
Query: 972 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
MF+DEVM+LVELN LR SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 968 MFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1027
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHL 1091
RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLGR S HL
Sbjct: 1028 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHL 1087
Query: 1092 ISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLS 1151
I YFE+I GV+KIK+ YNPATWMLEV+ SQE LG++F E Y+ SDLY+RNK LI++LS
Sbjct: 1088 IKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELS 1147
Query: 1152 RPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW 1211
PPPGSKDL+F TQFSQS +Q +ACLWKQH SYWRNP YTA R FFT IAL+FG++FW
Sbjct: 1148 TPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFW 1207
Query: 1212 DLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWA 1271
DLG + + DL NAMGSM+ AVLF+G+Q +VQPIV VERTVFYREKAAGMY+ +P+A
Sbjct: 1208 DLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYA 1267
Query: 1272 LAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALT 1331
AQV+IE+P+ILVQ+++YG +VY+MIGF+WTAAKF WY+FFM+FT L+FT+YGMMAVA+T
Sbjct: 1268 YAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMT 1327
Query: 1332 PNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD 1391
PN IAAIV+ FY +WN+F+GFIIPRPRIPIWWRWYYWA P+AWTLYGLV SQFG+ D
Sbjct: 1328 PNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTD 1387
Query: 1392 KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445
D ETVK FL+ + F+HDFL VV ++VVF VLF +FA IK NFQRR
Sbjct: 1388 TMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2020 bits (5234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 977/1426 (68%), Positives = 1154/1426 (80%), Gaps = 22/1426 (1%)
Query: 35 EEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANE-----------VDVYNLGLQERQR 83
EEDDEEAL+WAAL+KLPTY+R+R IL GE E VDV++LG ER+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKF 143
L+++LV+V D DNERFLLKLK RI RVGID+P +EVR+EHL VEAE + ++ +P+ +
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 YTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203
TN E+ N L I+P++K+ L IL D+SG+IKP R+TLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRLK 229
Query: 204 PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
LK SG VTYNGH M++FVPQRTAAYISQHD HIGEMTVRETL+FSARCQGVG+R++ML
Sbjct: 230 -DLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
TEL RREKAA IKPD D+D +MKA A EGQE+N+ITDY LK+LGL++CADTMVGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
ISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV LRQ IHI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQR 443
PAPETYDLFDDIILLSDG IVYQGPRE VLEFF MGF+CP+RKGVADFLQEVTSRKDQ+
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRE 503
QYWA +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT YGV E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFF 563
LLKANI RELLL+KRNSFVYIF+ IQ+ V+ + MT+F RTKMH+D+V DG IF GA FF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 AITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLS 623
A+ M+ NG SE+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV + F+S
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGG 683
YYV+G+D N GRFFKQY L+L V+QMA+ALFRF+ RN++VAN FGSF LL+ + LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 684 FILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS--SETLGVQVLKSRG 741
FIL+R+ + KWW W YW SP+ YAQNA+ NEFLGHSW K +S +ETLGVQ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 742 FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801
F WYW+G GAL GF++L N +TLALT+L P K + I+EE E E+ I GNV
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEE-ELKEKQANINGNV 827
Query: 802 -QLSTLGGSTD-DIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 859
+ T+ S + I G + + A+ S+P ++GMVLPF P SLTF+++ YSVDMP
Sbjct: 828 LDVDTMASSNNLAIVGSTGTGSEI----ADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMP 883
Query: 860 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 919
+EMK G++ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI+
Sbjct: 884 QEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIS 943
Query: 920 ISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 979
ISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAWLRL +VDS TRKMFI+EVME
Sbjct: 944 ISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVME 1003
Query: 980 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
LVEL PLR +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 1004 LVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
Query: 1040 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIP 1099
TVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG HS LI YFE I
Sbjct: 1064 TVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQ 1123
Query: 1100 GVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKD 1159
GV KI DGYNPATWMLEV+ SQE AL +DF + Y++S+L++RNKALI++LS PPPGS +
Sbjct: 1124 GVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSE 1183
Query: 1160 LYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKR 1219
LYFPTQ+SQS IQ +ACLWKQH SYWRNPPY A+R FFT IAL+FG++FWDLGG+ +
Sbjct: 1184 LYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQ 1243
Query: 1220 NQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEI 1279
+QDLFNAMGSM+ AVLF+GV SVQP+VSVERTVFYRE+AAGMY+ +P+A QV IE
Sbjct: 1244 SQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEF 1303
Query: 1280 PYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAI 1339
PY LVQSV+Y IVY+MIGF+WT AKFFWY+FFM+FTLL+FTFYGMMAV LTP++H+A+I
Sbjct: 1304 PYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASI 1363
Query: 1340 VSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGET 1399
VS+ FY +WN+F+GF+I RP P+WWRWY W P+AWTLYGL+ SQ+GD+ MD G
Sbjct: 1364 VSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDI-VTPMDDGIP 1422
Query: 1400 VKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445
V F+++YFDFKH +LG VA V+V F +LF FLF I NFQ+R
Sbjct: 1423 VNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1445 | ||||||
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.984 | 0.997 | 0.736 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.986 | 0.997 | 0.735 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.986 | 0.453 | 0.748 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.987 | 0.998 | 0.735 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.995 | 0.978 | 0.734 | 0.0 | |
| 357455075 | 1427 | Pleiotropic drug resistance protein [Med | 0.986 | 0.998 | 0.724 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.977 | 0.859 | 0.734 | 0.0 | |
| 359482993 | 1430 | PREDICTED: pleiotropic drug resistance p | 0.988 | 0.999 | 0.745 | 0.0 | |
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.994 | 0.994 | 0.743 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.984 | 0.997 | 0.717 | 0.0 |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2254 bits (5840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1067/1449 (73%), Positives = 1235/1449 (85%), Gaps = 26/1449 (1%)
Query: 1 MEGTHDIFMASTSLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ DI+ AS SLR RS++ W + + AFSRSSREEDDEEALKWAALEKLPTYNRLRKG
Sbjct: 1 MEGS-DIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 ILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEV 119
+LT S G ANE+DV +LG+QERQ+L+++LVKV + DNERFLLKLK RIDRVG+D+P +EV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 120 RYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGR 179
RYEHLN+EAEAF+ S ALPSFI TN+ E N L + SKK+H+TILKDVSG+IKP R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239
+TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 300 DYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
FQIV+ LR +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 420 GFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479
GFRCP+RKGVADFLQEVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMT 539
PFD++KSH AALTT+ YG+ K+ELLKAN SRE LLMKRNSFVY+FKL Q+ +A+V MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 540 LFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599
LFLRT+MH + + D G++AGA FF + V FNG +EISMTIAKLPVFYKQR+ F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 600 YAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 659
YAIPSWILKIPV+ +EVAVWVFL+YYV+G+D N GRFFKQY +LL V+QMAS LFR IA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 660 TGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719
GRNM+VANTFG+FA++ +++LGGFILS+ DIK WW W YW SPL Y QNA++ NEFL +
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEK 779
SW +++ LGV+ L+SR FF YWYWLGLGAL GFV L N + LAL FL PF+K
Sbjct: 720 SW----HNATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 780 PRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIR--GQQSSSQSLSLAEAEASRPKKKG 837
P+A ITE+ SNE G+ DI G +SS + SL E+S KKKG
Sbjct: 776 PQATITEDESSNE---------------GTLADIELPGIESSGRGDSL--VESSHGKKKG 818
Query: 838 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
MVLPFEPHS+TFDEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAG
Sbjct: 819 MVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAG 878
Query: 898 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 957
KTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YESLL+SA
Sbjct: 879 KTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSA 938
Query: 958 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRL VDS+TRKMFI+EVMELVELNP+R SLVGLPGVSGLSTEQRKRLTIAVELVANP
Sbjct: 939 WLRLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANP 998
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ
Sbjct: 999 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1058
Query: 1078 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRS 1137
EIYVGPLGRHS HLI YFE+I GV KIKDGYNPATWMLEV+A +QEL+LG+DFT+ YK S
Sbjct: 1059 EIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNS 1118
Query: 1138 DLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFF 1197
DLYRRNK LI++L +P PGSKDL+FPTQ+SQS +Q ACLWKQ WSYWRNPPYTAVRFF
Sbjct: 1119 DLYRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFF 1178
Query: 1198 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 1257
FT FIAL+FG++FWDLGG+ DL NA+GSM+TAVLFLGVQ SSVQP+V++ERTVFY
Sbjct: 1179 FTTFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFY 1238
Query: 1258 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTL 1317
REKAAGMY+ +P+A AQ+++E+PY+ VQ+V YG IVYAMIGFEWTA KFFWY+FFMYFTL
Sbjct: 1239 REKAAGMYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTL 1298
Query: 1318 LFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWT 1377
L++TFYGMM V LTPNHHIA+IV+ FY +WN+FSGF++ RP IP+WWRWYYWA P+AWT
Sbjct: 1299 LYYTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWT 1358
Query: 1378 LYGLVASQFGDMDDKKMDTGET-VKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALG 1436
+YGLVASQFGD+ + G+ VK FL+DY+ KHDF+GV A V+ AVLF +FA+
Sbjct: 1359 IYGLVASQFGDLTEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVS 1418
Query: 1437 IKMFNFQRR 1445
IK FNFQ+R
Sbjct: 1419 IKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2237 bits (5797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1448 (73%), Positives = 1243/1448 (85%), Gaps = 22/1448 (1%)
Query: 1 MEGTHDIFMASTSLRRSASR-WNTNSIGAFSRSSR--EEDDEEALKWAALEKLPTYNRLR 57
MEGT ++++A SLRR S W +N++ FS+SSR E+DDEEALKWAA+E+LPTY+RL+
Sbjct: 1 MEGT-ELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLK 59
Query: 58 KGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
KG+LTTS+GEANE+DV NLG E++ L+D+LVKV + DNE FLLKLKNRIDRVGI+LP +
Sbjct: 60 KGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVR+EHLNVE EA + S ALP+F F +I E LN+L I+PS K+ L+IL+DVSG+IKP
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
R+TLLLGPPSSGKTTLLLALAGKLDP LK SG VTYNGH+M+EFVPQRTAAYISQHD H
Sbjct: 180 KRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAF+ARCQGVG RYEM++EL RREKA+ IKPDPDIDV+MKA+ATEGQEANV
Sbjct: 240 IGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANV 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCAD MVG+EM+RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TT+QIVN ++Q IHI +GTAVISLLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFF
Sbjct: 360 TTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
MGF+CP+RKGVADFLQEVTSRKDQ QYWA K+KPY FVTV+EFAEAFQSF VG+++ E
Sbjct: 420 YMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L TPFDKSKSH AALTT+ YGVGK ELLKA SRE+LLMKRNSFVYIFKL Q+ +A+V
Sbjct: 480 LSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVA 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLFLRT+MH+D+VT+GGI+ GA FF++ + FNG SEIS+TIAKLPVFYKQR F+PP
Sbjct: 540 MTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPP 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
WA+++P WI KIP++ ++VA+WVFL+YYV+G+D N GRFFKQY LL V+QMAS LFRFI
Sbjct: 600 WAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFI 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VANTFGSFALL L +LGGFILSR++IKKWW W YW SPL Y QNAIV NEFL
Sbjct: 660 AAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
G+SW K D++ETLG+QVL+SRGFF H YWYW+G+GAL GF LL NF +TLALTFL P
Sbjct: 720 GNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPL 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKG 837
+KP+AVI+E+ SN + G +QLS++ T+ I E + K+KG
Sbjct: 780 QKPQAVISEDSASN-TSGKTGEVIQLSSV--RTELI--------------VEENHQKQKG 822
Query: 838 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
MVLPFEPHS+TF+++ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLTALMGVSGAG
Sbjct: 823 MVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAG 882
Query: 898 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 957
KTTLMDVLAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VT+YESLL+S+
Sbjct: 883 KTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSS 942
Query: 958 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRL PEV+SETRKMFI+EVMELVEL PLRQ+LVGLPGVSGLSTEQRKRLTIAVELVANP
Sbjct: 943 WLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANP 1002
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQ
Sbjct: 1003 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1062
Query: 1078 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRS 1137
EIYVGPLGRHSC LI YFEAI GV IKDGYNPATWMLEVS+++QE+ LG+DF YK S
Sbjct: 1063 EIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNS 1122
Query: 1138 DLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFF 1197
+LYRRNKALIE+LS PP GS DLYFPTQ+SQS + Q +ACLWKQHWSYWRNPPYTAVRF
Sbjct: 1123 ELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFL 1182
Query: 1198 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 1257
FT IAL+FG++FWDLG +T + QDLFNAMGSM+ A++FLG+Q SSVQP+V+VERTVFY
Sbjct: 1183 FTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFY 1242
Query: 1258 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTL 1317
RE+AAGMY+ +P+A AQV+IE+PYI +Q+ VYG IVYAMIGFEW+AAKFFWY+FFMYFTL
Sbjct: 1243 RERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTL 1302
Query: 1318 LFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWT 1377
LF+T+YGMMAVA+TPN +A+IVS+ FY +WN+FSGFIIPRPRIP+WWRWY W P+A+T
Sbjct: 1303 LFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYT 1362
Query: 1378 LYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGI 1437
LYGLV+SQFGD+ +++GETV+ F++ YFDFKH+ LG VAA + FA LF F FA I
Sbjct: 1363 LYGLVSSQFGDI-KHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSI 1421
Query: 1438 KMFNFQRR 1445
K FNFQRR
Sbjct: 1422 KFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2227 bits (5770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1080/1442 (74%), Positives = 1241/1442 (86%), Gaps = 17/1442 (1%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNL 76
S+S W + FSRSSR+EDDEEALKWAALEKLPTYNR+RKG+L S GEA+EVD++NL
Sbjct: 1705 SSSIWRNSGEEVFSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNL 1764
Query: 77 GLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNA 136
G QE++ L+++LVK+ + DNE+FLLKL+NRIDRVGIDLP++EVR+EHL ++AEA + S A
Sbjct: 1765 GFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRA 1824
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196
LPSFI N EDILN LRI+PS+K+ LTIL DVSG+IKP R+TLLLGPPSSGKTTLLL
Sbjct: 1825 LPSFIYSAFNQIEDILNTLRILPSRKKKLTILHDVSGIIKPRRMTLLLGPPSSGKTTLLL 1884
Query: 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
AL+GKLD +LKV+G VTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQGV
Sbjct: 1885 ALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGV 1944
Query: 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316
G RY+ML EL+RREKAA IKPDPDIDV+MKA+ATEGQ+ NVITDY LK+LGL+VCADT+V
Sbjct: 1945 GDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVCADTLV 2004
Query: 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
GD+MIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN LRQ IHI +GT
Sbjct: 2005 GDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGT 2064
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
A+ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FF SMGFRCP+RKGVADFLQEV
Sbjct: 2065 ALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEV 2124
Query: 437 TSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTET 496
TSRKDQ+QYWA K++PY FVTV+EFAEAFQSFH+G+K+ EL TPFDK+KSH AAL TE
Sbjct: 2125 TSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEK 2184
Query: 497 YGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGI 556
YGV K+ELL A ISRE LLMKRNSFVYIFKL Q+ +A + MT+FLRT+MHK++ DG I
Sbjct: 2185 YGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSI 2244
Query: 557 FAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEV 616
+ GA FF + M+ FNG SE++MTIAKLPVFYKQR F+P WAYA+PSWILKIP++F+EV
Sbjct: 2245 YTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEV 2304
Query: 617 AVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALL 676
AVWVF+SYYV+G+D N GR FKQY LL+ VNQMASALFRFIA GRNM+VANTFGSF+LL
Sbjct: 2305 AVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLL 2364
Query: 677 VLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLGVQ 735
+L +LGGF+LSRE++KKWW W YW SPL YAQNAIV NEFLG SW K + DS+E+LGV
Sbjct: 2365 LLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVA 2424
Query: 736 VLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDD 795
VLKSRGFF YWYW+G GAL GF+L+ NF YT+ALT+L+ FEKP+AVITEE E +
Sbjct: 2425 VLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE----NS 2480
Query: 796 RIGGNVQLST-LGGSTDDIRGQQSSSQ-----------SLSLAEAEASRPKKKGMVLPFE 843
+ GG ++LS+ GS D + + + A AEA R KKGMVLPF+
Sbjct: 2481 KTGGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQ 2540
Query: 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
P S+TFD++ YSVDMPEEMK QGVLED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMD
Sbjct: 2541 PLSITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMD 2600
Query: 904 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 963
VLAGRKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VTI+ESLL+SAWLRL
Sbjct: 2601 VLAGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRLPA 2660
Query: 964 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+VDS+TRKMFI+EVMELVEL PL+ SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 2661 DVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 2720
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVGP
Sbjct: 2721 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGP 2780
Query: 1084 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 1143
LGRHS HLI YF+ I GV KIKDGYNPATWMLEV++++QE LG+DFTE YK SDLYRRN
Sbjct: 2781 LGRHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYRRN 2840
Query: 1144 KALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIA 1203
K LI++LS+P PGSKDLYFPTQ+SQS + Q +ACLWKQ SYWRNPPYTAVRFFFT FIA
Sbjct: 2841 KDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIA 2900
Query: 1204 LLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAG 1263
L+FG++FWDLG + K+ QDL NAMGSM+ AVLFLGVQ SSVQP+V+VERTVFYRE+AAG
Sbjct: 2901 LIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAG 2960
Query: 1264 MYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFY 1323
MY+ +P+A AQ ++EIPY+ Q+VVYG IVYAMIGFEWTAAKFFWY+FFM+FTLL+FTFY
Sbjct: 2961 MYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFY 3020
Query: 1324 GMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVA 1383
GMMAVA TPN HIAAIV+ FYGLWN+FSGFI+PR RIP+WWRWYYWA P+AWTLYGLV
Sbjct: 3021 GMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVT 3080
Query: 1384 SQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQ 1443
SQFGD+ D+ DTG+TV+Q+L DYF F+HDFLGVVAAV+V F VLF F+FA IK FNFQ
Sbjct: 3081 SQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQ 3140
Query: 1444 RR 1445
RR
Sbjct: 3141 RR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2218 bits (5748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1062/1444 (73%), Positives = 1228/1444 (85%), Gaps = 17/1444 (1%)
Query: 3 GTHDIFMASTSLRRSASR-WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL 61
T D + AS SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLR+G+L
Sbjct: 2 ATADTYRASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLL 61
Query: 62 TTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRY 121
S GEA+E+D++NLG QE++ L+++LVKV + DNE+FLLKLKNRIDRVGID+P++EVR+
Sbjct: 62 MGSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRF 121
Query: 122 EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLT 181
EHL ++AEAF+ S ALPSF F N E ILN +RI+PSKKR TIL DVSG+IKP RLT
Sbjct: 122 EHLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLT 181
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241
LLLGPPSSGKTTLLLALAGKLDP LKV G VTYNGH M+EFVPQRTAAYISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEM 241
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDY 301
Query: 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQ
Sbjct: 302 TLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQ 361
Query: 362 IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGF 421
I+N L+Q IHI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFF S+GF
Sbjct: 362 IINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGF 421
Query: 422 RCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481
+CP+RKG ADFLQEVTSRKDQ QYWA K+ PY FVTV+EFAEAFQSFH+G+K++DEL +P
Sbjct: 422 KCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASP 481
Query: 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLF 541
FD++KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVYIFKL Q+A VAV+ MTLF
Sbjct: 482 FDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLF 541
Query: 542 LRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYA 601
LRT+M+K++ DG I+ GA FF + M+ FNG +E++MTIAKLPVFYKQRDF F+P WAYA
Sbjct: 542 LRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYA 601
Query: 602 IPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTG 661
+P+W+LKIP++F+EVAVWVF++YYV+G+D N R F+QY LLL VNQMAS LFRFIA G
Sbjct: 602 LPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAG 661
Query: 662 RNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721
RNM+VA+TFG+FA+L+L++LGGFILS +++KKWW W YW SPL YAQNAIV NEFLG SW
Sbjct: 662 RNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSW 721
Query: 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781
K +S+E+LG+ VLKSRGFF +WYW+G GAL GF+ + NF YTL L +L+PFEKP+
Sbjct: 722 SKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQ 781
Query: 782 AVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP 841
AVITEE + N + +T G T + + + A AE + KKKGMVLP
Sbjct: 782 AVITEESD----------NAKTATTGDET------HTWGEHMVEAIAEGNHNKKKGMVLP 825
Query: 842 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 901
F+PHS+TFD++ YSVDMPEEMK QG LED+L LL GVSGAFRPGVLTALMGVSGAGKTTL
Sbjct: 826 FQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTL 885
Query: 902 MDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 961
MDVLAGRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VT++ESLL+SAWLRL
Sbjct: 886 MDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRL 945
Query: 962 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1021
+V+SETRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 946 PSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1005
Query: 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081
MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEIYV
Sbjct: 1006 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYV 1065
Query: 1082 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYR 1141
GPLGRHS HLI+YFE I GV KIKDGYNPATWMLEV+ +QE LG+DFTE YK SDLYR
Sbjct: 1066 GPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYR 1125
Query: 1142 RNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAF 1201
RNK LI++LS+P PG+KDLYF TQ+SQ + QF+ACLWKQ WSYWRNPPYTAVRF FT F
Sbjct: 1126 RNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTF 1185
Query: 1202 IALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKA 1261
IAL+FG +FWDLG R R QDL NAMGSM+ AVLFLGVQ SVQP++ VERTVFYRE+A
Sbjct: 1186 IALMFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERA 1245
Query: 1262 AGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFT 1321
AGMY+ +P+A Q ++EIPY+ Q+VVYG IVY MIGFEWTA KFFWY+FFM+ TLL+FT
Sbjct: 1246 AGMYSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFT 1305
Query: 1322 FYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGL 1381
FYGMMAVA TPN HIA+I++ FY LWN+FSGFI+PR RIP+WWRWY W P+AWTLYGL
Sbjct: 1306 FYGMMAVAATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGL 1365
Query: 1382 VASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFN 1441
VASQFGD+ ++ +TVKQFL DYF FKHDFLGVVAAV+V F VLF F+FA IK FN
Sbjct: 1366 VASQFGDIQSTLLENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFN 1425
Query: 1442 FQRR 1445
FQ+R
Sbjct: 1426 FQKR 1429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2218 bits (5747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1474 (73%), Positives = 1246/1474 (84%), Gaps = 35/1474 (2%)
Query: 3 GTHDIFMASTSLRR-SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL 61
T +I+ A SLR+ S+S W + FSRSSR+EDDEEALKWAALEKLPTYNR+RKG+L
Sbjct: 2 ATGEIYRAGGSLRKDSSSIWRNSGEEVFSRSSRDEDDEEALKWAALEKLPTYNRMRKGLL 61
Query: 62 TTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRY 121
S GEA+EVD++NLG QE++ L+++LVK+ + DNE+FLLKL+NRIDRVGIDLP++EVR+
Sbjct: 62 MGSAGEASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRF 121
Query: 122 EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLT 181
EHL ++AEA + S ALPSFI N EDILN LRI+PS+K+ TIL DVSG+IKP R+T
Sbjct: 122 EHLTIDAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKXTILHDVSGIIKPRRMT 181
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241
LLLGPPSSGKTTLLLAL+GKLD +LKV+G VTYNGH M+EFVPQRTA YISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEM 241
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK--------------- 286
TVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPDIDV+MK
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVLIG 301
Query: 287 --AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A+ATEGQ+ NVITDY LK+LGL+VCADT+VGD+MIRGISGGQ+KRVTTGEM+VGP+ A
Sbjct: 302 LMAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKA 361
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
LFMDEISTGLDSSTT+QIVN LRQ IHI +GTA+ISLLQPAPETYDLFDDIILLSD QIV
Sbjct: 362 LFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIV 421
Query: 405 YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEA 464
YQGPRE VL+FF SMGFRCP+RKGVADFLQEVTSRKDQ+QYWA K++PY FVTV+EFAEA
Sbjct: 422 YQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEA 481
Query: 465 FQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYI 524
FQSFH+G+K+ EL TPFDK+KSH AAL TE YGV K+ELL A ISRE LLMKRNSFVYI
Sbjct: 482 FQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYI 541
Query: 525 FKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLP 584
FKL Q+ +A + MT+FLRT+MHK++ DG I+ GA FF + M+ FNG SE++MTIAKLP
Sbjct: 542 FKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLP 601
Query: 585 VFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLL 644
VFYKQR F+P WAYA+PSWILKIP++F+EVAVWVF+SYYV+G+D N GR FKQY LL+
Sbjct: 602 VFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLV 661
Query: 645 GVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPL 704
VNQMASALFRFIA GRNM+VANTFGSF+LL+L +LGGF+LSRE++KKWW W YW SPL
Sbjct: 662 LVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPL 721
Query: 705 TYAQNAIVANEFLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLL 763
YAQNAIV NEFLG SW K + DS+E+LGV VLKSRGFF YWYW+G GAL GF+L+
Sbjct: 722 MYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVF 781
Query: 764 NFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLST-LGGSTDDIRGQQSSSQ- 821
NF YT+ALT+L+ FEKP+AVITEE E + + GG ++LS+ GS D + +
Sbjct: 782 NFCYTVALTYLNAFEKPQAVITEESE----NSKTGGKIELSSHRRGSIDQTASTERREEI 837
Query: 822 ----------SLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 871
+ A AEA R KKGMVLPF+P S+TF+++ YSVDMPEEMK QGVLED+
Sbjct: 838 GRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLEDR 897
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA 931
L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETFA
Sbjct: 898 LELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFA 957
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
RI GYCEQNDIHSP VTI+ESLL+SAWLRL +VDS+TRKMFI+EVMELVEL PL+ SLV
Sbjct: 958 RIXGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLV 1017
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
GLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV
Sbjct: 1018 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1077
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPA 1111
VCTIHQPSIDIFEAFDEL L+KRGGQEIYVGPLGRHS HLI YFE I GV KIK GYNPA
Sbjct: 1078 VCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYNPA 1137
Query: 1112 TWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSW 1171
TWMLEV+ ++QE LG+DFTE YK SDLYRRNK LI++LS+P PGSKDLYFPTQ+SQS +
Sbjct: 1138 TWMLEVTTSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFF 1197
Query: 1172 IQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMF 1231
Q +ACLWKQ SYWRNPPYTAVRFFFT FIAL+FG++FWDLG + K+ QDL NAMGSM+
Sbjct: 1198 TQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMY 1257
Query: 1232 TAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGA 1291
AVLFLGVQ SSVQP+V+VERTVFYRE+AAGMY+ +P+A AQ ++EIPY+ Q+VVYG
Sbjct: 1258 AAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGV 1317
Query: 1292 IVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVF 1351
IVYAMIGFEWTAAKFFWY+FFM+FTLL+FTFYGMMAVA TPN HIAAIV+ FYGLWN+F
Sbjct: 1318 IVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLF 1377
Query: 1352 SGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFK 1411
SGFI+PR RIP+WWRWYYWA P+AWTLYGLV SQFGD+ D+ DTG+TV+Q+L DYF F+
Sbjct: 1378 SGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFE 1437
Query: 1412 HDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445
HDFLGVVAAV+V F +LF F+FA IK FNFQRR
Sbjct: 1438 HDFLGVVAAVIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455075|ref|XP_003597818.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486866|gb|AES68069.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2215 bits (5740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1048/1447 (72%), Positives = 1226/1447 (84%), Gaps = 22/1447 (1%)
Query: 1 MEGTHDIFMASTSLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEGT DI+ A+ SLR RS++ W + + FS+SSREEDDEEALKWAALEKLPTYNRLRKG
Sbjct: 1 MEGT-DIYRATNSLRARSSTVWRQSGVEVFSKSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 ILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEV 119
+LT S G A+EVDV +L QE+Q+L+++LVKV + DNERFLLK+K R+DRVG+D+P +EV
Sbjct: 60 LLTASHGGAHEVDVGDLAFQEKQKLLERLVKVAEEDNERFLLKVKERVDRVGLDIPTIEV 119
Query: 120 RYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGR 179
RY++L ++AEAF+ S ALPSFI TN+ E +LN+L IIP+KKRH++ILKDVSG++KP R
Sbjct: 120 RYQNLKIDAEAFVGSRALPSFINAATNVVEGVLNFLHIIPTKKRHVSILKDVSGIVKPRR 179
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239
+TLLLGPP SGKTTLLLAL+GKLDP+L+++G+VTYNGH ++EFVPQRTAAYISQHD HIG
Sbjct: 180 MTLLLGPPGSGKTTLLLALSGKLDPSLQLTGSVTYNGHGLNEFVPQRTAAYISQHDVHIG 239
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPDIDVYMKAIATEGQE ++ T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDIDVYMKAIATEGQEYSIST 299
Query: 300 DYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYVLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
FQIV+ LRQ +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF +M
Sbjct: 360 FQIVSSLRQYVHIMNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFETM 419
Query: 420 GFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479
GF+CP+RKG ADFLQEVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G+K+++EL
Sbjct: 420 GFKCPERKGAADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGRKLAEELS 479
Query: 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMT 539
PFDK+KSH AALTT+ YG+ K ELLKAN SRE LLMKRNSFVYIFKL Q+ +A++ MT
Sbjct: 480 VPFDKTKSHPAALTTKEYGLNKTELLKANFSREYLLMKRNSFVYIFKLTQLFIMALIAMT 539
Query: 540 LFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599
LF RT+MH++ D G++AGA FF + + FNG SEISMTIAKLPV+YKQRD F+P WA
Sbjct: 540 LFFRTEMHRNDQDDAGVYAGALFFTLVTMMFNGMSEISMTIAKLPVYYKQRDLLFYPSWA 599
Query: 600 YAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 659
YAIPSWILKIPVS +EV++WVFL+YYV+G+D N GR FKQ+ +L ++QMAS LFR IA
Sbjct: 600 YAIPSWILKIPVSLMEVSLWVFLTYYVIGFDPNVGRMFKQFVVLFFMSQMASGLFRAIAS 659
Query: 660 TGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719
GRNM+VANTFGSFALL LSLGGFILSR+DIK WW W YW SPL Y QNA++ANEFLGH
Sbjct: 660 LGRNMIVANTFGSFALLTFLSLGGFILSRKDIKGWWIWGYWISPLMYGQNALMANEFLGH 719
Query: 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEK 779
SW T D LG L +RGFF H YWYW+G+G L GFV L N A+ +AL L PF+K
Sbjct: 720 SWHNATAD----LGKDYLDTRGFFPHAYWYWIGVGGLVGFVFLFNVAFGVALAVLGPFDK 775
Query: 780 PRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 839
P A ITE+ +E D V+L + +SS ++ S+ E+S KKKGMV
Sbjct: 776 PSATITED---SEDDSSTVQEVELPRI----------ESSGRADSV--TESSHGKKKGMV 820
Query: 840 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899
LPFEPHS+TFD++VYSVDMP EMK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 821 LPFEPHSITFDDIVYSVDMPVEMKEQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAGKT 880
Query: 900 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 959
TLMDVLAGRKTGGYI G+I +SGYPKKQETFARISGYCEQNDIHSP VT+YESLL+SAWL
Sbjct: 881 TLMDVLAGRKTGGYIDGDIKVSGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 940
Query: 960 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
RL VDS TRKMFIDEVM+LVELN LR SLVGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 941 RLPSGVDSNTRKMFIDEVMDLVELNSLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1000
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI
Sbjct: 1001 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1060
Query: 1080 YVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDL 1139
YVGPLGRHS HLI YFE+I GV KIKDGYNPATWMLEV+ +QEL LG+DFT+ YK SDL
Sbjct: 1061 YVGPLGRHSTHLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELNLGVDFTDLYKNSDL 1120
Query: 1140 YRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFT 1199
YRRNK LI++LS P PGSKDL+FPTQFSQS +Q ACLWKQ WSYWRNPPYTAVRFFFT
Sbjct: 1121 YRRNKQLIQELSVPAPGSKDLHFPTQFSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFT 1180
Query: 1200 AFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYRE 1259
FI L+FG++FWDLGG+ QDL NA+GSM+TAVLFLGVQ SSVQP+V+VERTVFYRE
Sbjct: 1181 TFIGLMFGTMFWDLGGKHSSRQDLLNAVGSMYTAVLFLGVQNSSSVQPVVAVERTVFYRE 1240
Query: 1260 KAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLF 1319
KAAGMY+ +P+A +Q+++E+PY+ Q+V+YG IVYAMIGF+WTA KF WY+FFMYFTLL+
Sbjct: 1241 KAAGMYSALPYAFSQILVELPYVFAQAVIYGVIVYAMIGFDWTAEKFLWYLFFMYFTLLY 1300
Query: 1320 FTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLY 1379
FTFYGMMAVA+TPNHH+A+IV+ FY +WN+FSGF++PRP IPIWWRWYYWA P+AWT+Y
Sbjct: 1301 FTFYGMMAVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSIPIWWRWYYWACPVAWTIY 1360
Query: 1380 GLVASQFGDMDD-KKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIK 1438
GLVASQFGD+ + G+ VK FL D+F +HDF+G A V+ AV F F+FA+ IK
Sbjct: 1361 GLVASQFGDITTVMSTEGGKDVKTFLDDFFGIQHDFIGWCALVVGGIAVGFAFIFAVAIK 1420
Query: 1439 MFNFQRR 1445
FNFQ+R
Sbjct: 1421 SFNFQKR 1427
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2215 bits (5739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1056/1437 (73%), Positives = 1223/1437 (85%), Gaps = 25/1437 (1%)
Query: 10 ASTSLRRSASR-WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEA 68
AS SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLR+G+L S GEA
Sbjct: 230 ASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLMGSEGEA 289
Query: 69 NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEA 128
+E+D++NLG QE++ L+++LVKV + DNE+FLLKLKNRIDRVGID+P++EVR+EHL ++A
Sbjct: 290 SEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTIDA 349
Query: 129 EAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPS 188
EAF+ S ALPSF F N E ILN +RI+PSKKR TIL DVSG+IKP RLTLLLGPPS
Sbjct: 350 EAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLGPPS 409
Query: 189 SGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLDP LKV G VTYNGH M+EFVPQRTAAYISQHD HIGEMTVRETLA
Sbjct: 410 SGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRETLA 469
Query: 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308
FSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LGL
Sbjct: 470 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 529
Query: 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
D+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI+N L+Q
Sbjct: 530 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINSLKQ 589
Query: 369 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKG 428
IHI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFF S+GF+CP+RKG
Sbjct: 590 TIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPERKG 649
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSH 488
ADFLQEVTSRKDQ QYWA K+ PY FVTV+EFAEAFQSFH+G+K++DEL +PFD++KSH
Sbjct: 650 EADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRAKSH 709
Query: 489 RAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548
AALTT+ YGV K+ELL AN+SRE LLMKRNSFVYIFKL Q+A VAV+ MTLFLRT+M+K
Sbjct: 710 PAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTEMNK 769
Query: 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILK 608
++ DG I+ GA FF + M+ FNG +E++MTIAKLPVFYKQRDF F+P WAYA+P+W+LK
Sbjct: 770 NSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTWVLK 829
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
IP++F+EVAVWVF++YYV+G+D N R F+QY LLL VNQMAS LFRFIA GRNM+VA+
Sbjct: 830 IPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMIVAS 889
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS 728
TFG+FA+L+L++LGGFILS +++KKWW W YW SPL YAQNAIV NEFLG SW K +S
Sbjct: 890 TFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNVTNS 949
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
+E+LG+ VLKSRGFF +WYW+G GAL GF+ + NF YTL L +L+PFEKP+AVITEE
Sbjct: 950 TESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVITEES 1009
Query: 789 ESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLT 848
++ + ++++ + A AE + KKKGMVLPF+PHS+T
Sbjct: 1010 DN------------------------AKTATTEHMVEAIAEGNHNKKKGMVLPFQPHSIT 1045
Query: 849 FDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 908
FD++ YSVDMPEEMK QG LED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 1046 FDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 1105
Query: 909 KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSE 968
KTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VT++ESLL+SAWLRL +V+SE
Sbjct: 1106 KTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSE 1165
Query: 969 TRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
TRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 1166 TRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1225
Query: 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1088
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEIYVGPLGRHS
Sbjct: 1226 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHS 1285
Query: 1089 CHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIE 1148
HLI+YFE I GV KIKDGYNPATWMLEV+ +QE LG+DFTE YK SDLYRRNK LI+
Sbjct: 1286 SHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIK 1345
Query: 1149 DLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGS 1208
+LS+P PG+KDLYF TQ+SQ + QF+ACLWKQ WSYWRNPPYTAVRF FT FIAL+FG
Sbjct: 1346 ELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGL 1405
Query: 1209 LFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGI 1268
+FWDLG R R QDL NAMGSM+ AVLFLGVQ SVQP++ VERTVFYRE+AAGMY+ +
Sbjct: 1406 IFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMYSAL 1465
Query: 1269 PWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAV 1328
P+A Q ++EIPY+ Q+VVYG IVY MIGFEWTA KFFWY+FFM+ TLL+FTFYGMMAV
Sbjct: 1466 PYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGMMAV 1525
Query: 1329 ALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGD 1388
A TPN HIA+I++ FY LWN+FSGFI+PR RIP+WWRWY W P+AWTLYGLVASQFGD
Sbjct: 1526 AATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQFGD 1585
Query: 1389 MDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445
+ ++ +TVKQFL DYF FKHDFLGVVAAV+V F VLF F+FA IK FNFQ+R
Sbjct: 1586 IQSTLLENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKAFNFQKR 1642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482993|ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance protein 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2209 bits (5724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1076/1443 (74%), Positives = 1241/1443 (86%), Gaps = 14/1443 (0%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF 842
VI EE ++ E GG ++LS S D Q+ S A A A+ KKKGMVLPF
Sbjct: 782 VIVEESDNAE----TGGQIELSQRNSSID---------QAASTAVAGANHNKKKGMVLPF 828
Query: 843 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 902
+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 829 QPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLM 888
Query: 903 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 962
DVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESLL+SAWLRL
Sbjct: 889 DVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLP 948
Query: 963 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
+V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 949 SDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1008
Query: 1023 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVG
Sbjct: 1009 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVG 1068
Query: 1083 PLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRR 1142
PLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE LG+DFTE YK SDLYRR
Sbjct: 1069 PLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYKNSDLYRR 1128
Query: 1143 NKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFI 1202
NK LI++LS+PPPG+KDLYF TQFSQ + QF+ACLWKQ WSYWRNPPYTAVRF FT FI
Sbjct: 1129 NKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFI 1188
Query: 1203 ALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAA 1262
AL+FG++FWDLG + QDLFNAMGSM+ AVLFLG+Q SVQP+V VERTVFYRE+AA
Sbjct: 1189 ALMFGTMFWDLGTKWSTQQDLFNAMGSMYAAVLFLGIQNSQSVQPVVVVERTVFYRERAA 1248
Query: 1263 GMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTF 1322
GMY+ + +A AQV IEIPYI Q+VVYG IVYAMIGF+WTAAKFFWY+FFM+FTL++FTF
Sbjct: 1249 GMYSPLSYAFAQVTIEIPYIFSQAVVYGLIVYAMIGFQWTAAKFFWYLFFMFFTLMYFTF 1308
Query: 1323 YGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLV 1382
YGMMAVA TPN +IA+IV+ FYGLWN+FSGFI+PR RIP+WWRWYYW P++WTLYGLV
Sbjct: 1309 YGMMAVAATPNQNIASIVAAAFYGLWNLFSGFIVPRNRIPVWWRWYYWICPVSWTLYGLV 1368
Query: 1383 ASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1442
SQFGD+ + +++TG TVK +L DYF FKHDFLGVVAAV+V F VLF F+FA IK NF
Sbjct: 1369 TSQFGDITE-ELNTGVTVKDYLNDYFGFKHDFLGVVAAVVVGFVVLFLFIFAYAIKALNF 1427
Query: 1443 QRR 1445
QRR
Sbjct: 1428 QRR 1430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2207 bits (5718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1078/1450 (74%), Positives = 1245/1450 (85%), Gaps = 13/1450 (0%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQ-------SSSQSLSLAEAEASRPKK 835
VI EE ++ E GG ++LS S D RG++ +SS A A A+ KK
Sbjct: 782 VIVEESDNAE----TGGQIELSQRNSSIDQ-RGEEIGRSISSTSSAVREEAVAGANHNKK 836
Query: 836 KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 895
KGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTALMGVSG
Sbjct: 837 KGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSG 896
Query: 896 AGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 955
AGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESLL+
Sbjct: 897 AGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLY 956
Query: 956 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1015
SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKRLTIAVELVA
Sbjct: 957 SAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVA 1016
Query: 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRG
Sbjct: 1017 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1076
Query: 1076 GQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYK 1135
GQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE LG+DFTE YK
Sbjct: 1077 GQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYK 1136
Query: 1136 RSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVR 1195
SDLYRRNK LI++LS+PPPG+KDLYF TQFSQ + QF+ACLWKQ WSYWRNPPYTAVR
Sbjct: 1137 NSDLYRRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVR 1196
Query: 1196 FFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTV 1255
F FT FIAL+FG++FWDLG + QDLFNAMGSM+ AVLFLG+Q SVQP+V VERTV
Sbjct: 1197 FLFTTFIALMFGTMFWDLGTKWSTQQDLFNAMGSMYAAVLFLGIQNSQSVQPVVVVERTV 1256
Query: 1256 FYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYF 1315
FYRE+AAGMY+ + +A AQV IEIPYI Q+VVYG IVYAMIGF+WTAAKFFWY+FFM+F
Sbjct: 1257 FYRERAAGMYSPLSYAFAQVTIEIPYIFSQAVVYGLIVYAMIGFQWTAAKFFWYLFFMFF 1316
Query: 1316 TLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIA 1375
TL++FTFYGMMAVA TPN +IA+IV+ FYGLWN+FSGFI+PR RIP+WWRWYYW P++
Sbjct: 1317 TLMYFTFYGMMAVAATPNQNIASIVAAAFYGLWNLFSGFIVPRNRIPVWWRWYYWICPVS 1376
Query: 1376 WTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFAL 1435
WTLYGLV SQFGD+ + +++TG TVK +L DYF FKHDFLGVVAAV+V F VLF F+FA
Sbjct: 1377 WTLYGLVTSQFGDITE-ELNTGVTVKDYLNDYFGFKHDFLGVVAAVVVGFVVLFLFIFAY 1435
Query: 1436 GIKMFNFQRR 1445
IK NFQRR
Sbjct: 1436 AIKALNFQRR 1445
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2204 bits (5711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1039/1448 (71%), Positives = 1223/1448 (84%), Gaps = 25/1448 (1%)
Query: 1 MEGTHDIFMASTSLR-RSASRWNTNSIGAFSRSSR--EEDDEEALKWAALEKLPTYNRLR 57
MEG+ DI+ A SLR S++ W + + AFSRSSR E++DEEALKWAALEKLPTYNRLR
Sbjct: 1 MEGS-DIYRARNSLRANSSTVWRNSIMEAFSRSSRHEEDNDEEALKWAALEKLPTYNRLR 59
Query: 58 KGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
KG+LTTSRG ANE+D+ LG QERQ+L+D+L+ V + DNE LLKLK RIDRVGID+P +
Sbjct: 60 KGLLTTSRGVANEIDITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVRYEHLNVEAEA++ S ALP+F+ F TN+ E L I+ KK+H+TIL+DVSG+IKP
Sbjct: 120 EVRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
R+ LLLGPPSSGKTTLLLAL+GKLDPTLKVSG V YNGH+M+EFVPQRTAAYISQHD H
Sbjct: 180 RRMALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAFSARCQGVGTRY++L+ELARREK A IKPDPDIDVYMKA AT GQEA++
Sbjct: 240 IGEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASL 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLD+CADTM+GDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TTFQIV LRQ +HI +GTAVISLLQPAPETY+LFDDI+L+SDGQIVYQGPRE VLEFF
Sbjct: 360 TTFQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
+GF+CP+RKGVADFLQEVTSRKDQ QYW H+++ YRFVTV EFAEAFQSFHVG++I +E
Sbjct: 420 YVGFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L TPFDKSKSH AALTT+ YGV K+ELLKAN SRE LLMKRNSFVYIFKL Q+ +A++
Sbjct: 480 LATPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILT 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MT+FLRT+MH++++ DGG++ GA FFA+ ++ FNG +EISMTI KLP+FYKQRD F+P
Sbjct: 540 MTMFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPS 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
WAYAIPSWILKIP++F+E AVWVFL+YYV+G+D N GR KQY +LL +NQM+S LFR I
Sbjct: 600 WAYAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAI 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VA+TFGSFALLVL +LGGF+LSR DIK WW W YW SPL Y QNAIV NEFL
Sbjct: 660 AALGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
G SW FT +S++TLG+Q+L+SRGFF H YWYW+G+GAL GF++L N YTLALT+L+P+
Sbjct: 720 GDSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPY 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKG 837
+ P+ ITEE ES G T+ I + S ++A +S KK+G
Sbjct: 780 DTPQTTITEESES-----------------GMTNGI----AESAGRAIAVMSSSHKKKRG 818
Query: 838 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 897
M+LPFEP+S+TFD++VYSVDMP EMK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAG
Sbjct: 819 MILPFEPYSITFDQIVYSVDMPLEMKDQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAG 878
Query: 898 KTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 957
KTTLMDVLAGRKTGGYI GNI +SGYPK+QETFARISGYCEQNDIHSP VT+YESL++SA
Sbjct: 879 KTTLMDVLAGRKTGGYIEGNIKVSGYPKRQETFARISGYCEQNDIHSPHVTVYESLVYSA 938
Query: 958 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
WLRL EV++ TRKMFI+EVMELVELNPLR SLVGLPGV+GLSTEQRKRLTIAVELVANP
Sbjct: 939 WLRLPAEVEAYTRKMFIEEVMELVELNPLRNSLVGLPGVNGLSTEQRKRLTIAVELVANP 998
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ
Sbjct: 999 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1058
Query: 1078 EIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRS 1137
EIYVGPLGRHS +I YFE+I GV KIKDGYNPATWMLEV+ +QEL LG+DF E Y+ S
Sbjct: 1059 EIYVGPLGRHSSQMIKYFESIEGVGKIKDGYNPATWMLEVTTPAQELNLGVDFHEIYRNS 1118
Query: 1138 DLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFF 1197
L RRNK LI +L P PGSKDL+FPTQ+ QS +Q +ACLWKQHWSYWRNPPYTAVRF
Sbjct: 1119 GLCRRNKRLISELGNPAPGSKDLHFPTQYPQSLLVQCLACLWKQHWSYWRNPPYTAVRFL 1178
Query: 1198 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 1257
T A+LFG++FWDLGG+ QDLFNAMGSM+ AVLF+GVQ +SVQP+V++ERTVFY
Sbjct: 1179 STTVTAVLFGTMFWDLGGKYSSRQDLFNAMGSMYNAVLFVGVQNSASVQPVVAIERTVFY 1238
Query: 1258 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTL 1317
RE+AAGMY+ +P+ALAQV+IE+PY+ VQ+ Y IVYAM+GFEWT KFFWY+FFMYFTL
Sbjct: 1239 RERAAGMYSALPYALAQVIIELPYVFVQATSYSVIVYAMMGFEWTLQKFFWYVFFMYFTL 1298
Query: 1318 LFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWT 1377
+FTFYGMM VA+TPNHH+A++V++ FYG+WN+FSGF+I RP IP+WWRWYYWA P+AWT
Sbjct: 1299 CYFTFYGMMTVAVTPNHHVASVVASAFYGIWNLFSGFVIARPSIPVWWRWYYWACPVAWT 1358
Query: 1378 LYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGI 1437
+YGLVASQFGD+ + +V++F++ + KHDF+GV A ++ FAVLF +FA+ I
Sbjct: 1359 IYGLVASQFGDITNVMKSENMSVQEFIRSHLGIKHDFVGVSAIMVSGFAVLFVIIFAVSI 1418
Query: 1438 KMFNFQRR 1445
K FNFQRR
Sbjct: 1419 KAFNFQRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1445 | ||||||
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.958 | 0.953 | 0.557 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.989 | 0.973 | 0.537 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.974 | 0.991 | 0.527 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.548 | 0.556 | 0.602 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.532 | 0.529 | 0.516 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.524 | 0.525 | 0.536 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.520 | 0.531 | 0.515 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.519 | 0.525 | 0.470 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.514 | 0.525 | 0.471 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.512 | 0.510 | 0.482 | 0.0 |
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4068 (1437.1 bits), Expect = 0., P = 0.
Identities = 788/1414 (55%), Positives = 989/1414 (69%)
Query: 42 LKWAALEKLPTYNRLRKGIL--TTSRGEAN--EVDVYNLGLQERQRLIDKLVKVTDVDNE 97
L+WAALE+LPTY+RLRKG+L T G+ +VDV NL +E++ L++ ++K + DNE
Sbjct: 59 LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNE 118
Query: 98 RFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157
+FL +L+ R DRVGI++PK+EVRYE+L+VE + AS ALP+ N E IL +
Sbjct: 119 KFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHL 178
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGH 217
+PSKKR + ILKD+SG+IKP R+TLLLGPP D TL++SG +TY GH
Sbjct: 179 LPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 238
Query: 218 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ EFVPQ+T AYISQHD H GEMTVRE+L FS RC GVGTRY++LTEL+RRE+ AGIKP
Sbjct: 239 EFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKP 298
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DP+ID +MK+IA GQE +++TDY LK+LGLD+CADT+VGD M RGISGGQ+KR+TTGEM
Sbjct: 299 DPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEM 358
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+VGPA ALFMDEISTGLDSSTTFQI +RQ +HI T VISLLQPAPET++LFDDIIL
Sbjct: 359 LVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIIL 418
Query: 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
LS+GQIVYQG R+ VLEFF MGF+CP+RKG+ADFLQEVTS+KDQ QYW +E PY +V+
Sbjct: 419 LSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVS 478
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
V +F+ F SFH GQ+++ E R P+DK+K+H AAL T+ YG+ ++L KA RE LLMK
Sbjct: 479 VHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMK 538
Query: 518 RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEIS 577
RNSFVY+FK +QI ++++ MT++ RT+MH TV DG F GA FF++ + FNG +E++
Sbjct: 539 RNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELA 598
Query: 578 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637
T+ +LPVF+KQRDF F+PPWA+A+P ++LKIP+S +E +W+ L+YY +G+ +A RFF
Sbjct: 599 FTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFF 658
Query: 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKW 697
+Q VNQMA +LFRF+ GR V+AN+ ++DI W W
Sbjct: 659 RQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTW 718
Query: 698 AYWCSPLTYAQNAIVANEFLGHSWKKFTQDS---SETLGVQVLKSRGFFAHEYWYWXXXX 754
Y+ SP+ Y Q A+V NEFL W D+ ++T+G +LKSRGFF YW+W
Sbjct: 719 CYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIG 778
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIR 814
Y +AL +L+P +A T +E + D G + S GGS ++
Sbjct: 779 ALLGFTVLFNFCYIIALMYLNPLGNSKA--TTVVEEGK-DKHKGSH---SGTGGSVVELT 832
Query: 815 GXXXXXXXXXXXXXXXXRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVL 874
PKK GMVLPF+P SL F+ V Y VDMP EMK QGV D+L L
Sbjct: 833 STSSHG------------PKK-GMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQL 879
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+ G+I ISGYPK Q TFAR+S
Sbjct: 880 LRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVS 939
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994
GYCEQNDIHSP VT+YESL++SAWLRLS ++D++TR+MF++EVMELVEL PLR S+VGLP
Sbjct: 940 GYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLP 999
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
GV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 1000 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1059
Query: 1055 IHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWM 1114
IHQPSIDIFE+FDEL LMKRGGQ IY G LG HS L+ YFEAI GV KIKDGYNPATWM
Sbjct: 1060 IHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWM 1119
Query: 1115 LEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQF 1174
L+V+ S E + +DF + + S + RRN+ LI++LS PPPGS DLYF T+++Q Q
Sbjct: 1120 LDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQT 1179
Query: 1175 VACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAV 1234
AC WK +WS WR P Y A+RF T I +LFG LFW G + ++ QDL N G+M+ AV
Sbjct: 1180 KACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAV 1239
Query: 1235 LFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVY 1294
LFLG ++VQP V++ERTVFYREKAAGMY+ IP+A++QV +EI Y +Q+ VY I+Y
Sbjct: 1240 LFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILY 1299
Query: 1295 AMIGFEWTAAKFFWYIXXXXXXXXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGF 1354
+MIG++WT KFFW+ M VALTPN+ IA I + F WN+FSGF
Sbjct: 1300 SMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGF 1359
Query: 1355 XXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGE---TVKQFLKDYFDFK 1411
YYWA+P+AWTLYG++ SQ GD D TG ++K LK+ F F
Sbjct: 1360 LIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKNGFGFD 1419
Query: 1412 HDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 1445
+D IK NFQRR
Sbjct: 1420 YDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4045 (1429.0 bits), Expect = 0., P = 0.
Identities = 781/1453 (53%), Positives = 1010/1453 (69%)
Query: 13 SLRRSASRWNTNSIGAFXXXXXXXXXXX----ALKWAALEKLPTYNRLRKGILTT----- 63
S+ RS SR + N F ALKWAA+EKLPTY+RLR ++
Sbjct: 20 SISRSVSRASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDD 79
Query: 64 ---SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
++ + EVDV L ++RQ+ ID + KV + DNER L KL+NRIDRVGI LP VEVR
Sbjct: 80 VYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVR 139
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHL ++A+ + + +LP+ + N+ E L + I +KK LTILKD+SGVIKPGR+
Sbjct: 140 YEHLTIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRM 199
Query: 181 TLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPP D +L+VSG +TYNG+ +DEFVP++T+AYISQ+D H+G
Sbjct: 200 TLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGI 259
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTV+ETL FSARCQGVGTRY++L ELARREK AGI P+ D+D++MKA A +G + +++TD
Sbjct: 260 MTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTD 319
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+C DT+VGD+M+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTF
Sbjct: 320 YTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTF 379
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIV CL+Q +H+N T ++SLLQPAPET+DLFDDIIL+S+GQIVYQGPR+ +LEFF S G
Sbjct: 380 QIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFG 439
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
F+CP+RKG ADFLQEVTS+KDQ QYW + +PY ++ V EFA ++SFHVG K+S+EL
Sbjct: 440 FKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAV 499
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDKS+ H+AAL + Y V KRELLK+ +E LLM+RN+F Y+FK +QI +A + TL
Sbjct: 500 PFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTL 559
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT+M+ D ++ GA F + + FNGF+E++M +++LPVFYKQRD F+P W +
Sbjct: 560 FLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTF 619
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
++P+++L IP S LE W+ ++YY +G+ +A RFFKQ+ L+ + QMA++LFR IA
Sbjct: 620 SLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASV 679
Query: 661 GRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
R M++ANT + I WW WAYW SPLTYA N +V NE
Sbjct: 680 CRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPR 739
Query: 721 W--KKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDPFE 778
W K + +S+ LG VL + + + WYW +TLALT+L+P
Sbjct: 740 WMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLG 799
Query: 779 KPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGXXXXXXXXXXXXXXXX--RPKKK 836
K ++ EE NE D+ G + +L + + RG KK
Sbjct: 800 KKAGLLPEE--ENEDADQ-GKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKK 856
Query: 837 GMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGA 896
GMVLPF P +++FD+V Y VDMP EM+ QGV E +L LL GV+GAFRPGVLTALMGVSGA
Sbjct: 857 GMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGA 916
Query: 897 GKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 956
GKTTLMDVLAGRKTGGYI G++ ISG+PK QETFARISGYCEQ DIHSP VT+ ESL+FS
Sbjct: 917 GKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFS 976
Query: 957 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1016
A+LRL EV + + MF+D+VMELVEL+ LR S+VGLPGV+GLSTEQRKRLTIAVELVAN
Sbjct: 977 AFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVAN 1036
Query: 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
PSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG
Sbjct: 1037 PSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGG 1096
Query: 1077 QEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKR 1136
Q IY GPLG++S ++ YFE+ PGV KI + YNPATWMLE S+ + EL L +DF E Y +
Sbjct: 1097 QVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQ 1156
Query: 1137 SDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRF 1196
S L++RNKAL+++LS PP G+ DLYF TQFSQ++W QF +CLWKQ W+YWR+P Y VRF
Sbjct: 1157 SALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRF 1216
Query: 1197 FFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVF 1256
FT +LL G++FW +GG DL +G+++ A++F+G+ CS+VQP+V+VERTVF
Sbjct: 1217 IFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVF 1276
Query: 1257 YREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXXXX 1316
YRE+AAGMY+ +P+A++QV E+PY+L+Q+V Y IVYAM+GFEW A KFFW++
Sbjct: 1277 YRERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFS 1336
Query: 1317 XXXXXXXXXMAVALTPNHHIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAW 1376
M V+LTPN +A+I ++ FYG++N+FSGF YYW P+AW
Sbjct: 1337 FLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAW 1396
Query: 1377 TLYGLVASQFGDMDDKKMDTGE----TVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXX 1432
T+YGL+ SQ+GD++ + G TVKQ+++D++ F+ D
Sbjct: 1397 TVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFI 1456
Query: 1433 XXXXIKMFNFQRR 1445
I+ NFQ R
Sbjct: 1457 FAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3966 (1401.2 bits), Expect = 0., P = 0.
Identities = 758/1436 (52%), Positives = 993/1436 (69%)
Query: 21 WNT--NSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGL 78
WN+ N+ L+WAAL++LPTY+R+R+GI GE E+ + NL
Sbjct: 2 WNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEA 61
Query: 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALP 138
E++ L+D+LV + D E+F +++ R D V + PK+EVR+++L VE+ + S ALP
Sbjct: 62 SEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRALP 121
Query: 139 SFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXX 198
+ F N+ E +L + +I K+ LTIL +SGVI+P RLTLLLGPP
Sbjct: 122 TIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLAL 181
Query: 199 XXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258
L+ SG +TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG
Sbjct: 182 AGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGF 241
Query: 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318
+Y+ML ELARREK AGI PD D+D++MK++A G E +++ +Y +K+LGLD CADT+VGD
Sbjct: 242 KYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGD 301
Query: 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378
EMI+GISGGQKKR+TTGE++VGPA LFMDEIS GLDSSTT QI+ +R + H GT V
Sbjct: 302 EMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTV 361
Query: 379 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438
ISLLQP+PETY+LFDD+IL+S+GQI+YQGPR+ VL+FF+S+GF CP RK VADFLQEVTS
Sbjct: 362 ISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTS 421
Query: 439 RKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYG 498
+KDQ+QYW+ +PYR+V +FAEAF+S+ G+K++ +L PFDK +H AAL+T YG
Sbjct: 422 KKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYG 481
Query: 499 VGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFA 558
V K ELLK N + + LMK+N+F+Y+FK +Q+ VA++ MT+F RT MH +T+ DG I+
Sbjct: 482 VKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYL 541
Query: 559 GATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAV 618
G+ +F++ ++ FNGF+E+ M +AKLPV YK RD F+P WAY +PSW+L IP S +E A
Sbjct: 542 GSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESAT 601
Query: 619 WVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXX 678
WV ++YY +GYD RF +Q+ L ++QM+ LFR + GR+M+VANT
Sbjct: 602 WVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVV 661
Query: 679 XXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD-SSETLGVQVL 737
R+ I WW W YW SPL YAQNA NEFLGH+W+K + +S++LG+ +L
Sbjct: 662 MTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALL 721
Query: 738 KSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRI 797
K R F+ YWYW +TL L L+P+ K +AV++ E E +E++ +
Sbjct: 722 KERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSRE-ELDEREKKR 780
Query: 798 GGN---VQLSTLGGSTDDIRGXXXXXXXXXXXXXXXXRPKKKGMVLPFEPHSLTFDEVVY 854
G+ V+L + I G K +GMVLPF+P SL+F + Y
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYF---------------KNRGMVLPFQPLSLSFSNINY 825
Query: 855 SVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 914
VD+P +K QG+LED+L LL ++GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I
Sbjct: 826 YVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTI 885
Query: 915 TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 974
G++ ISG+PK+QETFARISGYCEQND+HSP +T+ ESLLFSA LRL ++DSET++ F+
Sbjct: 886 EGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFV 945
Query: 975 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
EVMELVEL L +LVGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAA
Sbjct: 946 HEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1005
Query: 1035 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISY 1094
AIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDEL MKRGG+ IY GPLG+ SC LI Y
Sbjct: 1006 AIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKY 1065
Query: 1095 FEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPP 1154
FE+I GVQKIK G+NPA WML+V+A+++E LG+DF E Y+ S+L +RNK LIE LS+P
Sbjct: 1066 FESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPS 1125
Query: 1155 PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLG 1214
+K++ FPT++SQS + QFVACLWKQ+ SYWRNP YTAVRFF+T I+L+ G++ W G
Sbjct: 1126 NIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFG 1185
Query: 1215 GRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQ 1274
+ Q LFNAMGSM+ AVLF+G+ ++ QP+VS+ER V YRE+AAGMY+ +P+A AQ
Sbjct: 1186 SKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQ 1245
Query: 1275 VMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIXXXXXXXXXXXXXXXMAVALTPNH 1334
V IE PY+L QS +Y I YAM FEW+A KF WY+ M A+TPNH
Sbjct: 1246 VFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNH 1305
Query: 1335 HIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDK-- 1392
++A+I++ FY LWN+FSGF YYWANP+AWTLYGL+ SQ+GD D++
Sbjct: 1306 NVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGD-DERSV 1364
Query: 1393 KMDTG---ETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 1445
K+ G VKQ L+D +KHD IK FNFQRR
Sbjct: 1365 KLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2563 (907.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 481/798 (60%), Positives = 601/798 (75%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGA--FXXXXXXXXXXXALKWAALEKLPTYNRLRK 58
MEGT AS S+RR++S W +S G F AL+WAALEKLPT++RLRK
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDS-GREIFSRSSREEDDEEALRWAALEKLPTFDRLRK 58
Query: 59 GILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPK 116
GILT S G NE+D+ LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDLP
Sbjct: 59 GILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPT 118
Query: 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIK 176
+EVR++HL VEAE + ALP+F+ F +N + LN L ++P++K+ TIL DVSG++K
Sbjct: 119 IEVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVK 178
Query: 177 PGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN 236
PGR+ LLLGPP D LK +G VTYNGH M+EFVPQRTAAYI Q+D
Sbjct: 179 PGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDV 238
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
HIGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ N
Sbjct: 239 HIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTN 298
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
V+TDY LK+LGL+VCADTMVGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDS
Sbjct: 299 VMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDS 358
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFF 416
STT+QIVN LR +HI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF
Sbjct: 359 STTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFF 418
Query: 417 ASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISD 476
+MGF+CP RKGVADFLQEVTS+KDQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I D
Sbjct: 419 ETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGD 478
Query: 477 ELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVV 536
EL PFDK+KSH AALTT+ YGVG +EL+K + SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 479 ELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFL 538
Query: 537 YMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFP 596
MTLF RT+M K T DG ++ GA FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 539 TMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYP 598
Query: 597 PWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRF 656
W Y++P W+LKIP+SF+E A+ F++YYV+G+D N GR FKQY LL+ +NQMASALF+
Sbjct: 599 AWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKM 658
Query: 657 IAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEF 716
+A GRNM+VANT R+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 659 VAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEF 718
Query: 717 LGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDP 776
GHSW + ++SSETLGV LKSRGF H YWYW +TLALTFL+
Sbjct: 719 FGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNS 778
Query: 777 FEKPRAVITEEIESNEQD 794
KP+AVI EE S+E +
Sbjct: 779 LGKPQAVIAEEPASDETE 796
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2169 (768.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 401/777 (51%), Positives = 544/777 (70%)
Query: 42 LKWAALEKLPTYNRLRKGIL--TTSRG--EANEVDVYNLGLQERQRLIDKLVKVTDVDNE 97
L+WAA+E+LPT++RLRKG+L T++ G E ++D+ L ++++ L++ ++ + DNE
Sbjct: 61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNE 120
Query: 98 RFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157
+FL L+ R DRVGI++PK+EVRYE+++VE + AS ALP+ N E IL + +
Sbjct: 121 KFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHL 180
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGH 217
+PSK++ + ILKD+SG++KP R+TLLLGPP D TL++SG +TY GH
Sbjct: 181 LPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 240
Query: 218 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ EFVPQ+T AYISQHD H GEMTVRE L FS RC GVG+RY++++EL+RREK GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DP ID +MK+IA GQE +++TDY LK+LGLD+CAD + GD M RGISGGQKKR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+VGPA ALFMDEISTGLDSSTTFQI +RQ +HI+ T +ISLLQPAPET++LFDDIIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
LS+GQIVYQGPR+ VLEFF GF+CP+RKGVADFLQEVTS+KDQ QYW +E+PY +V+
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
V +F+ F +FH GQK++ E R P+DK+K+H AAL T+ YG+ EL KA RE LLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 518 RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEIS 577
RNSFVY+FK +QI ++++ MT++LRT+MH TV DG F GA FF++ V FNG +E++
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 578 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637
T+ +LPVFYKQRDF F+PPWA+A+P+W+LKIP+S +E +W+ L+YY +G+ +A RFF
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKW 697
+Q VNQMA +LFRF+ GR V++N+ ++DI+ W W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 698 AYWCSPLTYAQNAIVANEFLGHSWKKFTQDS---SETLGVQVLKSRGFFAHEYWYWXXXX 754
AY+ SP+ Y Q AIV NEFL W D+ ++T+G +LKSRGFF YW+W
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIV 780
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTD 811
Y LAL +L+P +A + EE + ++ + G + L S++
Sbjct: 781 ALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSSN 837
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2141 (758.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 413/770 (53%), Positives = 531/770 (68%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGE----ANE-----VDVYNLGLQERQRLIDKLVKV 91
ALKWA++EKLPTYNRLR ++ GE N+ VDV L +ERQ+ ID + KV
Sbjct: 50 ALKWASIEKLPTYNRLRTSLMP-ELGEDDVYGNQILNKAVDVTKLDGEERQKFIDMVFKV 108
Query: 92 TDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDI 151
+ DNER L KL+NRIDRVGI LP VEVRY+HL V+A+ + +LPS + N+ E
Sbjct: 109 AEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLPSLLNAVRNMGEAA 168
Query: 152 LNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGT 211
L + I +KK LTILKDVSG++KP R+TLLLGPP D +L VSG
Sbjct: 169 LGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDKSLDVSGE 228
Query: 212 VTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
VTYNG+ ++EFVP +T+AYISQ+D H+G MTV+ETL FSARCQGVGTRY++L ELARREK
Sbjct: 229 VTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELARREK 288
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
AGI P+ D+D++MKA A +G ++++ITDY LK+LGLD+C DT+VGD+M+RGISGGQKKR
Sbjct: 289 DAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRGISGGQKKR 348
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
VTTGEM+VGP LFMDEISTGLDSSTTFQIV CL+Q +H+ T +ISLLQPAPET+DL
Sbjct: 349 VTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQPAPETFDL 408
Query: 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEK 451
FDDIILLS+GQIVYQGPR+ +LEFF S GF+CP+RKG ADFLQEVTS+KDQ QYW +
Sbjct: 409 FDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYWVDPNR 468
Query: 452 PYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISR 511
PYR++ V EFA +F+ FHVG K+S+EL P+DKSKSH+AAL + Y + K ELLK+ +
Sbjct: 469 PYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTELLKSCWDK 528
Query: 512 ELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFN 571
E +LMKRNSF Y+FK +QI +A + TL+LRT+MH D I+ G+ FA+ + FN
Sbjct: 529 EWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLFAMIVNMFN 588
Query: 572 GFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631
G +E++MTI +LPVFYKQRD F PPW Y +P+++L IP+S E W+ ++YY +GY
Sbjct: 589 GLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVTYYSIGYAP 648
Query: 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDI 691
+A RFFKQ+ ++ + QMA+ +FRFIA T R M +ANT R +I
Sbjct: 649 DAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGGFLLPRSEI 708
Query: 692 KKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYW 750
WW+WAYW SPL+YA NAI NE W K + +S+ LG VL F + WYW
Sbjct: 709 PVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYW 768
Query: 751 XXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 800
+TLALT+LDP K +A++ +E E E + G N
Sbjct: 769 IGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE-EDEEAKGKAGSN 817
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2032 (720.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 390/757 (51%), Positives = 519/757 (68%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFL 100
ALKWAALEKLPT+ RLR I+ + VDV LG+ +RQ+ ID + KVT+ DNE+FL
Sbjct: 39 ALKWAALEKLPTFARLRTTII---HPHEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFL 95
Query: 101 LKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160
K +NRIDRV I LP VEVR+E + +EA + ALP+ NI E L L +
Sbjct: 96 KKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPTLPNAALNIAERGLRLLGFNFT 155
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMD 220
K +TIL+DVSG+IKP R+TLLLGPP D +LKV+G VTYNGH ++
Sbjct: 156 KTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLE 215
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
EFVPQ+T+AYISQ+D H+G MTV+ETL FSARCQGVGTRY++L+EL RREK AGI P+P+
Sbjct: 216 EFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELVRREKDAGILPEPE 275
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+D++MK+IA ++++ITDY L++LGLD+C DT+VGDEMIRGISGGQKKRVTTGEM+VG
Sbjct: 276 VDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVG 335
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P LFMDEISTGLDSSTT+QIV CL++ + T ++SLLQPAPET++LFDDIILLS+
Sbjct: 336 PTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSE 395
Query: 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQE 460
GQIVYQGPR+ VL FF + GF+CP RKG ADFLQEVTSRKDQ QYWA +KPY +++V E
Sbjct: 396 GQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSE 455
Query: 461 FAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNS 520
F++ F++FHVG + +L P+D+ KSH A+L + + V K +L K RELLLMKRN+
Sbjct: 456 FSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNA 515
Query: 521 FVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTI 580
F YI K +QI +A++ T++LRT+M +DG ++ GA F++ + FNGF+E+++ I
Sbjct: 516 FFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMI 575
Query: 581 AKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQY 640
+LPVFYKQRD F PPW +++P+++L IP+S E VWV ++YY++G+ RF K
Sbjct: 576 QRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHL 635
Query: 641 ALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYW 700
++ QMA +FRFIA T R+M++ANT R +I KWWKWAYW
Sbjct: 636 LVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYW 695
Query: 701 CSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXX 759
SP+ Y +A+ NE L W + + D+S +LG+ VL+ F WYW
Sbjct: 696 VSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGF 755
Query: 760 XXXXXXAYTLALTFLDPFEKPRAVITEE-IESNEQDD 795
TLALTFL+P EK +AV+++E E N ++
Sbjct: 756 TVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAEN 792
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1838 (652.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 360/765 (47%), Positives = 492/765 (64%)
Query: 42 LKWAALEKLP-----TYNRL--RKGILTTSRGEAN-----EVDVYNLGLQERQRLIDKLV 89
L+WAA+ +LP T+N + R T + G A+ +DV L +R+ L+ + +
Sbjct: 38 LRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQAL 97
Query: 90 KVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFE 149
+D DN + L +K R+DRVG+++PK+EVR+E+LN+EA+ + ALP+ + + FE
Sbjct: 98 ATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFE 157
Query: 150 DILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVS 209
L+ LRII +K L ILKD+SG+IKPGR+TLLLGPP D +LK +
Sbjct: 158 RCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKT 217
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE-MLTELAR 268
G +TYNG ++++F +RT+AYISQ DNHI E+TVRETL F+ARCQG + + +L R
Sbjct: 218 GNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTR 277
Query: 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328
EK GI+P +ID +MKA + +G++ +V TDY LKVLGLDVC+DTMVG++M+RG+SGGQ
Sbjct: 278 LEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQ 337
Query: 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388
+KRVTTGEM VGP LFMDEISTGLDSSTTFQIV C+R +H+ T +++LLQPAPET
Sbjct: 338 RKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPET 397
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAH 448
+DLFDD+ILLS+G +VYQGPRE V+ FF S+GFR P RKGVADFLQEVTS+KDQ QYWA
Sbjct: 398 FDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWAD 457
Query: 449 KEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKAN 508
KPY+F+ V + A AF++ G +L PFDK + +AL + + E LK
Sbjct: 458 PSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGWENLKVC 517
Query: 509 ISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMV 568
RELLL+KR+ F+Y F+ Q+ FV +V T+FL+T++H + G + FF + +
Sbjct: 518 FVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHM 577
Query: 569 NFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628
FNGFSE+ + I++LPVFYKQRD F P W+++I SW+L++P S LE VW + Y+ VG
Sbjct: 578 MFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVG 637
Query: 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXR 688
+AGRFF+ LL V+QMA LFR +A R+MV+ANT +
Sbjct: 638 LAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPK 697
Query: 689 EDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYW 748
DIK WW W +W SPL+Y Q AI NEF W + S T+G+ +LK R F ++YW
Sbjct: 698 ADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLKLRSFPTNDYW 757
Query: 749 YWXXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQ 793
YW TLAL +L+P K RAV+ ++ NE+
Sbjct: 758 YWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD--PNEE 800
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1817 (644.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 355/753 (47%), Positives = 491/753 (65%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGEANE-----VDVYNLGLQERQRLIDKLVKVTDVD 95
AL+WA +++LPT+ RLR L GE E VDV LG ER +I+KL+K + D
Sbjct: 24 ALQWAEIQRLPTFKRLRSS-LVDKYGEGTEKGKKVVDVTKLGAMERHLMIEKLIKHIEND 82
Query: 96 NERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA-FLASNALPSFIKFYTNIFEDILNY 154
N + L K++ R++RVG++ P +EVRYEHL VEA + ALP+ ++F D+L
Sbjct: 83 NLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVFLDLLK- 141
Query: 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTY 214
L + + + ++ IL DVSG+I PGRLTLLLGPP + LK G ++Y
Sbjct: 142 LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISY 201
Query: 215 NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
NGH ++E VPQ+T+AYISQHD HI EMT RET+ FSARCQGVG+R +++ E+++REK G
Sbjct: 202 NGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGG 261
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
I PDP+ID YMKAI+ +G + ++ TDY LK+LGLD+CA+T+VG+ M RGISGGQKKR+TT
Sbjct: 262 IIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQKKRLTT 321
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
EM+VGP ALFMDEI+ GLDSST FQI+ L+Q HI + T +SLLQPAPE+YDLFDD
Sbjct: 322 AEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDD 381
Query: 395 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYR 454
I+L+++G+IVY GPR+ VL+FF GF+CP+RKGVADFLQEV S+KDQ QYW H+ P+
Sbjct: 382 IVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHS 441
Query: 455 FVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELL 514
FV+V ++ F+ +G+KI + L P+D SK+H+ AL+ Y + K EL +A ISRE L
Sbjct: 442 FVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACISREFL 501
Query: 515 LMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS 574
LMKRN FVY+FK Q+ A++ MT+F+RT+M D + G + FFA ++ +G
Sbjct: 502 LMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDII-HGNSYMSCLFFATVVLLVDGIP 560
Query: 575 EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAG 634
E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E VW L+YYV+GY
Sbjct: 561 ELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPY 620
Query: 635 RFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKW 694
RFF+Q+ +L V+ + ++FR IA + V A T D+ W
Sbjct: 621 RFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGW 680
Query: 695 WKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXX 754
KW +W +P++YA+ + NEFL W+K Q ++ TLG +L+SRG +Y YW
Sbjct: 681 LKWGFWVNPISYAEIGLSVNEFLAPRWQKM-QPTNVTLGRTILESRGLNYDDYMYWVSLS 739
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAVITEE 787
+TLAL+FL R +I+++
Sbjct: 740 ALLGLTIIFNTIFTLALSFLKSPTSSRPMISQD 772
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1812 (642.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 365/757 (48%), Positives = 492/757 (64%)
Query: 41 ALKWAALEKLPTYNRLRKGILT------TSRGEANEVDVYNLGLQERQRLIDKLVKVTDV 94
AL+WA +E+LPT R+R +L T +G VDV LG ER +I+KL+K +
Sbjct: 58 ALQWAEIERLPTVKRMRSTLLDDGDESMTEKGR-RVVDVTKLGAVERHLMIEKLIKHIEN 116
Query: 95 DNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA-FLASNALPSFIKFYTNIFEDILN 153
DN + L K++ RIDRVG++LP +EVRYE L V AE + ALP+ N + +L+
Sbjct: 117 DNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTL----WNTAKRVLS 172
Query: 154 YLRIIPSKKRH---LTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSG 210
L + K H + I+ DV+G+IKPGRLTLLLGPP + LK SG
Sbjct: 173 ELVKLTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSG 232
Query: 211 TVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
++YNGH +DEFVPQ+T+AYISQ+D HI EMTVRET+ FSARCQGVG+R +++ E+++RE
Sbjct: 233 EISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKRE 292
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
K GI PD ++D YMKAI+ EG + ++ TDY LK+LGLD+CA+ ++GD M RGISGGQKK
Sbjct: 293 KEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKK 352
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
R+TT EM+VGP ALFMDEI+ GLDSST FQIV L+Q HI+S T ++SLLQPAPE+YD
Sbjct: 353 RLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYD 412
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKE 450
LFDDI+L++ G+IVY GPR VL FF GFRCP+RKGVADFLQEV S+KDQ QYW H++
Sbjct: 413 LFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHED 472
Query: 451 KPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANIS 510
PY FV+V+ ++ F+ +G+KI D L P+D+SKSH+ AL+ Y + EL A IS
Sbjct: 473 LPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACIS 532
Query: 511 RELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF 570
RE LLMKRN FVYIFK Q+ A + MT+F+RT+M D + G + A FFA+ ++
Sbjct: 533 REYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDII-HGNSYMSALFFALIILLV 591
Query: 571 NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630
+GF E+SMT +L VFYKQ+ F+P WAYAIP+ +LK+P+SF E VW LSYYV+GY
Sbjct: 592 DGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYT 651
Query: 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXRED 690
A RFFKQ+ LL V+ + ++FR +A + +V + T
Sbjct: 652 PEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPS 711
Query: 691 IKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYW 750
+ W KW +W +PL+Y + + NEFL W + Q ++ TLG +L++RG + Y YW
Sbjct: 712 MPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQM-QPNNFTLGRTILQTRGMDYNGYMYW 770
Query: 751 XXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEE 787
+TLALTFL RA+I+++
Sbjct: 771 VSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQD 807
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5873 | 0.9806 | 0.9698 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6969 | 0.9840 | 0.9759 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6906 | 0.9826 | 0.9978 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6945 | 0.9847 | 0.9875 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7287 | 0.9778 | 0.9853 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7127 | 0.9785 | 0.9846 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6962 | 0.9840 | 0.9759 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5287 | 0.9764 | 0.9751 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ABC | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1433 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1445 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-100 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-98 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-74 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-72 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-55 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-54 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-46 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-45 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-44 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-42 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-37 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 8e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-32 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-29 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 5e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-22 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-22 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-20 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 9e-20 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-19 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 9e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-15 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-15 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-15 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-15 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-14 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-14 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-13 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-13 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-13 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-13 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-13 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-12 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 7e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 7e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-11 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-11 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 8e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 9e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-09 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 7e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-07 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 3e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-07 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 9e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-06 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 7e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 9e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 7e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 9e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 9e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 9e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 7e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 9e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.001 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 0.001 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.001 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.001 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.002 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.002 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.003 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.003 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.003 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.003 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.003 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.003 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.004 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.004 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.004 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.004 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2114 bits (5478), Expect = 0.0
Identities = 886/1462 (60%), Positives = 1104/1462 (75%), Gaps = 27/1462 (1%)
Query: 11 STSLRRSASRWNTNSIGAFS-------RSSREEDDEEALKWAALEKLPTYNRLRKGILTT 63
S+ RS SR + N FS R+S ++DEEALKWAA+EKLPTY+RLR I+ +
Sbjct: 9 RRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKS 68
Query: 64 --------SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP 115
++ EVDV L +RQ+ ID + KV + DNE+FL K +NRIDRVGI LP
Sbjct: 69 FVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLP 128
Query: 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVI 175
VEVR+EHL VEA+ ++ S ALP+ NI E L L I +KK LTILKD SG+I
Sbjct: 129 TVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGII 188
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD 235
KP R+TLLLGPPSSGKTTLLLALAGKLDP+LKVSG +TYNG+ ++EFVP++T+AYISQ+D
Sbjct: 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND 248
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
H+G MTV+ETL FSARCQGVGTRY++L+ELARREK AGI P+ ++D++MKA A EG ++
Sbjct: 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKS 308
Query: 296 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355
++ITDY LK+LGLD+C DT+VGDEMIRGISGGQKKRVTTGEM+VGP LFMDEISTGLD
Sbjct: 309 SLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
Query: 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 415
SSTT+QIV CL+Q +H+ T ++SLLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEF
Sbjct: 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF 428
Query: 416 FASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 475
F S GF+CP+RKG ADFLQEVTS+KDQ QYWA + KPYR+++V EFAE F+SFHVG ++
Sbjct: 429 FESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488
Query: 476 DELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAV 535
+EL PFDKS+SH+AAL Y V K ELLKA +E LLMKRN+FVY+FK +QI VA
Sbjct: 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548
Query: 536 VYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF 595
+ T+FLRT+MH DG ++ GA F++ + FNGF+E+++ I +LPVFYKQRD F
Sbjct: 549 IASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH 608
Query: 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFR 655
PPW + +P+++L IP+S +E VWV ++YY +G+ A RFFKQ L+ + QMA+ +FR
Sbjct: 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR 668
Query: 656 FIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANE 715
IA R M++ANT G+ LL++ LGGFIL + +I WW+WAYW SPL+Y NA+ NE
Sbjct: 669 LIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728
Query: 716 FLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774
W K D+S LG VL F + WYW+G+GAL GF +L N +TLALT+L
Sbjct: 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
Query: 775 DPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSL-------AE 827
+P K +A+I+EE + + LS+ G+ Q S L E
Sbjct: 789 NPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLE 848
Query: 828 AEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVL 887
A K+GMVLPF P +++FD+V Y VDMP EMK QGV ED+L LL V+GAFRPGVL
Sbjct: 849 AANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVL 908
Query: 888 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 947
TALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP V
Sbjct: 909 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV 968
Query: 948 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1007
T+ ESL++SA+LRL EV E + MF+DEVMELVEL+ L+ ++VGLPGV+GLSTEQRKRL
Sbjct: 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRL 1028
Query: 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1067
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1029 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1088
Query: 1068 ELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALG 1127
EL LMKRGGQ IY GPLGR+S +I YFEAIPGV KIK+ YNPATWMLEVS+ + E+ LG
Sbjct: 1089 ELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLG 1148
Query: 1128 IDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWR 1187
IDF EHYK S LY+RNKAL+++LS PPPG+ DLYF TQ+SQS+W QF +CLWKQ W+YWR
Sbjct: 1149 IDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWR 1208
Query: 1188 NPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQP 1247
+P Y VRFFFT AL+ G++FW +G + DL +G+M+ AVLF+G+ CS+VQP
Sbjct: 1209 SPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQP 1268
Query: 1248 IVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFF 1307
+V+VERTVFYRE+AAGMY+ +P+A+AQV+ EIPY+L+Q+ Y IVYAM+ FEWTAAKFF
Sbjct: 1269 MVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFF 1328
Query: 1308 WYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRW 1367
W+ F +F+ L+FT+YGMM V+LTPN +AAI + FYGL+N+FSGF IPRP+IP WW W
Sbjct: 1329 WFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVW 1388
Query: 1368 YYWANPIAWTLYGLVASQFGDMDDK----KMDTGETVKQFLKDYFDFKHDFLGVVAAVLV 1423
YYW P+AWT+YGL+ SQ+GD++D T+K +++D++ + DF+G VAAVLV
Sbjct: 1389 YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLV 1448
Query: 1424 VFAVLFGFLFALGIKMFNFQRR 1445
F V F F+FA I+ NFQ R
Sbjct: 1449 GFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1186 bits (3070), Expect = 0.0
Identities = 414/1451 (28%), Positives = 657/1451 (45%), Gaps = 165/1451 (11%)
Query: 95 DNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDIL 152
+ + ++ + ID I K+ V Y++L+ A S+ P+F I
Sbjct: 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTRGF 62
Query: 153 NYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK-VSGT 211
L+ + ILK + G+IKPG LT++LG P SG +TLL +A D V G
Sbjct: 63 RKLKK-FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 212 VTYNGHDMDEFVPQRTA--AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
+TY+G +E Y ++ D H +TV ETL F+ARC+ R + ++
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
+ I D Y+ GL +T VG++ +RG+SGG++
Sbjct: 182 KH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
KRV+ E +G A D + GLDS+T + + L+ + +I T ++++ Q + + Y
Sbjct: 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY 275
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHK 449
+LFD +I+L +G +Y GP + ++F MGF+CP R+ ADFL +TS +RQ
Sbjct: 276 ELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGY 334
Query: 450 EKP-YRFVTVQEFAEAFQSFHVGQKISDELRTPFDK---------------SKSHRAALT 493
EK R T QEF +++ ++ E+ D+ +K +
Sbjct: 335 EKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRP 392
Query: 494 TETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553
+ Y V +K ++R L MK N +F + +A++ ++F +
Sbjct: 393 SSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYS 452
Query: 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSF 613
G GA FFAI F+ EI+ P+ K R + + P A AI S I +IP
Sbjct: 453 RG---GALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKI 509
Query: 614 LEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSF 673
+E V+ + Y++V + AGRFF +L S LFR I + + A T +
Sbjct: 510 IESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569
Query: 674 ALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ----DSS 729
LL L GF + R + W KW Y+ +PL YA +++ NEF G ++
Sbjct: 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGY 629
Query: 730 ETLGVQ---------------VLKS---RGFFAHEY-WYWLGLGALFGFVLLLNFAYTLA 770
+ LGV V + F + W G + GF + F Y L
Sbjct: 630 DNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL 689
Query: 771 LTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEA 830
F ++ ++ + + + G T + +DI
Sbjct: 690 TEFNKGAKQKGEILVFR-RGSLKRAKKAG----ETSASNKNDI----------------- 727
Query: 831 SRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKV-----------QGVLEDKLVLLNGVS 879
+ G VL + D+V DM +E + ++K V+LN V
Sbjct: 728 ----EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVD 783
Query: 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 939
G +PG LTALMG SGAGKTTL++VLA R T G ITG + +F R GY +Q
Sbjct: 784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQ 843
Query: 940 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 999
D+H P T+ ESL FSA+LR V + +++EV++L+E+ ++VG+PG GL
Sbjct: 844 QDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGL 902
Query: 1000 STEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQP
Sbjct: 903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQP 962
Query: 1059 SIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVS 1118
S +FE FD L L+++GGQ +Y G LG +S +I+YFE G K + NPA WMLEV
Sbjct: 963 SAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVI 1021
Query: 1119 AASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPT---QFSQSSWIQFV 1175
A+ D+ E ++ S Y+ K ++ L ++D P +++ S W QF
Sbjct: 1022 GAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFK 1081
Query: 1176 ACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVL 1235
LW+ YWR P Y +FF T F AL G F+ +G Q L N M ++F A +
Sbjct: 1082 LVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG---TSLQGLQNQMFAVFMATV 1138
Query: 1236 FLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYA 1295
+ P V+ RE+ + ++ + + AQ+ +EIPY LV ++ I Y
Sbjct: 1139 LFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYY 1198
Query: 1296 MIGFEWTAAK-------FFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLW 1348
+GF W A+K + L+F+ G M ++ PN AA++++L + +
Sbjct: 1199 PVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMC 1258
Query: 1349 NVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDK---------KMDTGET 1399
F G + P R+P +W + Y +P + + L+++ D+ +G+T
Sbjct: 1259 LSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQT 1318
Query: 1400 VKQFLKDY---------------------FDFKHDFLGVVAAVLV----VFAVLFGFLFA 1434
+++K Y + + +DFL +++ F + F+F
Sbjct: 1319 CGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFF 1378
Query: 1435 LGIKMFNFQRR 1445
I F
Sbjct: 1379 NIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = e-100
Identities = 112/239 (46%), Positives = 141/239 (58%), Gaps = 47/239 (19%)
Query: 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 904 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 963
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +T+ E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 964 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = 9e-98
Identities = 173/593 (29%), Positives = 286/593 (48%), Gaps = 48/593 (8%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQETFAR 932
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
IS Y +Q+D+ P +T+ E L+F A LR+ V + ++ +DEV++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 993 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPA 1111
+CTIHQPS ++FE FD++ LM G+ Y+G + +F + G + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDL-GHP-CPENYNPA 272
Query: 1112 TWMLEVSA-------ASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPT 1164
+ ++V A S+E I + + SD+ R S + L +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGK---AGGLVKDS 327
Query: 1165 QFSQSS------WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFW--DLGGR 1216
+ + W QF A L + S R+P VR T A+L G ++ L +
Sbjct: 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK 387
Query: 1217 TKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVM 1276
+N + G++F + + Q V + + E VF RE +G+Y + LA+ +
Sbjct: 388 GVQNIN-----GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTI 442
Query: 1277 IEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHI 1336
E+P ++ ++ +I Y MIG A F ++F + T +G + + +
Sbjct: 443 AELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSM 502
Query: 1337 AAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLY---GLVASQFGDMDDKK 1393
A V F + +F GF I IP++++W + ++W Y GL+ +Q+ D+D+ +
Sbjct: 503 ALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIE 559
Query: 1394 MDTGETVKQFLKDY------FDFKHDFLGVVAAVLVVFAVLF--GFLFALGIK 1438
+ T F++ L + LV+ F FAL I+
Sbjct: 560 CTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 4e-74
Identities = 161/644 (25%), Positives = 296/644 (45%), Gaps = 74/644 (11%)
Query: 148 FEDILNYLRIIPSKKRH-LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL 206
++ +++ LR ++R +LK+VSGV KPG L ++G +GKTTL+ ALA + +
Sbjct: 20 WKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV 79
Query: 207 KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266
K SG+V NG +D + +AY+ Q D I +TVRE L F A M +
Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA-------HLRMPRRV 132
Query: 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE-MIRGIS 325
++EK + V+ LGL CA+T +G ++G+S
Sbjct: 133 TKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKGLS 168
Query: 326 GGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
GG++KR+ E++ P L LF DE ++GLDS + +V L+ + T + ++ QP
Sbjct: 169 GGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIHQP 226
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQ 444
+ E ++LFD IIL+++G++ Y G + + FF+ +G CP+ ADF +V + +
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE 286
Query: 445 YWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKS------------HRAAL 492
+ +++ ++F +G+ + K+ + A+
Sbjct: 287 -----NESRE--RIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339
Query: 493 TTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552
T+ Y + KR L ++ R+ LL+K +LIQ A++ ++L + + V
Sbjct: 340 WTQFYALLKRSWL--SVLRDPLLLK-------VRLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 553 DGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
+ GA F +T + F N F I++ A+LPVF ++ + AY + I ++P+
Sbjct: 391 NIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
+ A++ ++Y+++G S A F L+ V +A++ I+ + +A T G
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
++ L GGF ++ + I ++KW + S Y ++ N++ + T ++
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 732 L----GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLAL 771
G +L++ F + +L L L + AL
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 1e-72
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 905
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 906 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 965
AGR+TG ++G + I+G P + +F +I GY Q+DI P +T+ E+L+F+A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 966 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 8e-55
Identities = 80/210 (38%), Positives = 123/210 (58%), Gaps = 6/210 (2%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFAR 932
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
Y Q+DI P +T+ E+L ++A LRL P S+ + E + L +L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTR---IG 137
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1053 CTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082
TIHQP D+F FD + L+ G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 3e-54
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 7/215 (3%)
Query: 1173 QFVACLWKQHWSYWRNPPYT-AVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMF 1231
Q A L ++ WR+P R +AL+FG++F + N G +F
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFG----NLDTSLGGLNRPGLLF 57
Query: 1232 TAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGA 1291
++LF + + P+ ER V RE A+ +Y+ + LA++++E+P L+Q++++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1292 IVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVF 1351
IVY M+G + +FF ++ + T L + G+ AL P+ A+ + L +
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1352 SGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQF 1386
SGF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 2e-46
Identities = 131/497 (26%), Positives = 242/497 (48%), Gaps = 61/497 (12%)
Query: 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLV-----------------LLNGVSGAFRPGV 886
P +L F +V Y V E MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 887 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 946
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 947 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006
+T+ E+L+F + LRL + + + + + V+ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1066
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1067 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELAL 1126
D + ++ G+ ++ G G + ++YFE++ NPA ++L +LA
Sbjct: 275 DSVLVLSE-GRCLFFGK-GSDA---MAYFESVGFSPSFP--MNPADFLL-------DLAN 320
Query: 1127 GIDFTEHYKRSDLYRRNKALIEDL-SRPPPGSKDLYFPTQFSQ----------------- 1168
G+ T+ + ++L+ + P K + F Q
Sbjct: 321 GVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSS 380
Query: 1169 -----SSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDL 1223
S+W + L ++ ++ + +R F ALL G ++W R D+
Sbjct: 381 DRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFR-----DV 435
Query: 1224 FNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYIL 1283
+ +G +F +F GV + + ER +F +E+A+GMY + +A+++ ++P L
Sbjct: 436 QDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMEL 495
Query: 1284 VQSVVYGAIVYAMIGFE 1300
+ ++ + Y M G +
Sbjct: 496 ILPTIFLTVTYWMAGLK 512
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 6e-45
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 503 ELLKANISRELLLMKRNSFV-YIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561
LKA + RE L R+ + +++LIQ +A+V+ T+F DT G G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 562 FFAITMVNFNGFSEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 620
FF+I F+ + IS I + V ++ + P AY + ++++P+S L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 680
+ Y++VG + RFF +LL AS L FIA + A+ G LL LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 681 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716
L GF + + + W +W Y+ +PLTYA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 7e-44
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 13/217 (5%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 927
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
R GY Q P +T+ E+L F A L + ++E R I+E++EL L
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084
G + + E D + ++ G I G
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKI-IAEGTP 221
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 4e-42
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 38/242 (15%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
IL DVS ++ G++ +LG SGKTTLL A++G+++ SG + +NG Q+
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AY+ Q D + +TVRETL ++A + R+ + I+ DV ++
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLR 129
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALAL 345
A T +G +++GISGG+++RV+ +++ P + L
Sbjct: 130 D-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-L 165
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
+DE ++GLDS T +V+ L Q N ++++ QP + + LFD I+LLS G+IVY
Sbjct: 166 ILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGEIVY 224
Query: 406 QG 407
G
Sbjct: 225 SG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-39
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
G+E +RGISGG++KRV+ E +V A L D + GLDSST +I+ C+R + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 3e-38
Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 51/298 (17%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
T L VS ++PG + LLGP +GKTTLL LAG L PT SG + G+D+
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 220 DEFVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + R Y+ Q + E+TVRE L F AR G+
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-------------------- 109
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
+EA + L++ GL+ ++ +R +SGG K+R++
Sbjct: 110 --------------KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDI 395
++ L +DE ++GLD + +I LR+ T ++S +L+ E +L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 396 ILLSDGQIVYQGPRELVLEFFASMGFRC--PKRKGVADFLQEVTSRKDQRQYWAHKEK 451
I+L+DG+I+ +G E + E F G P+R +A+ L+ + K + + E
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-37
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 155 LRIIPSKKRH----LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG 210
R I + ILKD SGV+KPG + L+LG P SG +TLL ALA + + + V G
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG 65
Query: 211 TVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255
+ YNG EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 66 DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 8e-34
Identities = 131/534 (24%), Positives = 246/534 (46%), Gaps = 64/534 (11%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ +GT+ N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
RT +++Q D +TVRETL F + L L +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCS-----------LLRLPK----------------- 171
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALA 344
+ QE ++ + + LGL C +T++G+ IRGISGG++KRV+ EM++ P+L
Sbjct: 172 ---SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V L T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEA 464
+ G + +F S+GF ADFL ++ + Q + +EKP Q +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVAS 343
Query: 465 FQSFHVGQ-KISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKR----- 518
+ + + K + E+ + + +T+ + R + ++ +L++R
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 519 --NSF--VYIFKLIQIAFVAVVYMTLFLRTKMHKD--TVTD--GGIFAGATFFAITMVNF 570
SF + +F++I A +A + H D V D G +F + F+ + F
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMW-------WHSDFRDVQDRLGLLFFISIFWGV----F 452
Query: 571 NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630
F+ + + + +F K+R + +Y + + +P+ + +++ ++Y++ G
Sbjct: 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
Query: 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGF 684
G F +LLG ++ L + + A+T + +L + GGF
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 38/219 (17%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKK 926
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 927 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984
+ E + Y + D+H P +T+ E+L F+ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 985 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1045 VD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082
D T +++Q S +I++ FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 8e-32
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA- 931
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 932 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
+ GYC Q D +T+ E L F A L+ P+ K ++ ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1051 VVCTIHQPSIDIFEAF-DELFLMKRG 1075
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-30
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 150 DILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS 209
L K +LK+VSG KPG LT ++GP +GK+TLL ALAG+ L VS
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG-LGVS 65
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
G V NG +D+ ++ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 66 GEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 930
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 931 ARISGYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
R G QN P F T+ E + F PE + E R ++E +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G+T++ H + E D + +++ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 9e-29
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 927
K L+GVS PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
+ R GY Q P T+ E L + AWL+ + S+ K +DEV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-27
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W K S+ETLG VLKSRG F YWYW+G+GAL GF +L N +TLALT+L+P K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 781 RAVI 784
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L VS +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 933 ISGYCEQN---DIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNPLR 987
I GY Q D P +++ + +L + L + + +DE +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T++ H + + E FD + L+ R
Sbjct: 182 GMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQET 929
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 930 FARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVEL 983
A+ Y Q+ +T+YE +L + R S E + ++E +EL+ L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-----VEEALELLGL 128
Query: 984 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 1044 -TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+ G TVV +H D+ A D L L+K G
Sbjct: 184 LNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 73/262 (27%), Positives = 112/262 (42%), Gaps = 64/262 (24%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KK + D+S + G + LLG +GKTT L L G+L PT SGT NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 221 EFVPQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
E + L+VLGL A+ +SGG K++++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 336 EMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYD 390
++G P++ L +DE ++GLD ++ I + + + G ++I S+ E
Sbjct: 146 IALIGGPSV-LLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEA 197
Query: 391 LFDDIILLSDGQIVYQG-PREL 411
L D I ++SDG++ G P+EL
Sbjct: 198 LCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 927
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 928 ETFAR---ISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 982
R I G+ Q+ + P +T E++ L L+ E R+ EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAGVPKKERRER----AEELLE 126
Query: 983 LNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1038 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
M +R + G T+V H P ++ E D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 3e-22
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 926
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1047 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 5e-22
Identities = 75/256 (29%), Positives = 114/256 (44%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL D+S I G +T +LGP SGK+TLL LAG L P SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ +E I + L++LGL+ AD V + +SGG+++RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
LA L +DE ++ LD + +++ LR ++ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 6e-22
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
L D+S IK G L++GP SGK+TLL L G L PT SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GP 341
+E + L+++GL+ D +SGGQK+RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDI 395
+ L +DE + GLD + +++ L++ + G +I LL +L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 93.6 bits (234), Expect = 9e-22
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 930
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R GY + +T+ E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 1e-21
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 148 FEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK 207
+++ LNY +P K +L ++SG +KPG LT L+G +GKTTLL LAG+
Sbjct: 6 WKN-LNY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGV 61
Query: 208 VSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
++G + NG +D+ QR+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 62 ITGEILINGRPLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 926
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
+ R G Q+ P +T+ E++ F LR P+ + R + E++ELV L L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1045
LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1046 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+ G T + H D EA D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 51/207 (24%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
LN VS G + AL+G SG+GK+TL+ +AG G +I I G E
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG----SILIDG-----EDLTD 66
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
+ V + LF L+ V+E + L
Sbjct: 67 LEDELPPLRRRIGMV-FQDFALFP---HLT--------------VLENIAL--------- 99
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 1051
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G TV
Sbjct: 100 -----GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154
Query: 1052 VCTIHQPSIDIFEAF---DELFLMKRG 1075
V H D+ EA D + +++ G
Sbjct: 155 VLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 5e-21
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 19/209 (9%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 933
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 934 SGYCEQNDIHSPF-----VTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 986
GY Q S +T+ + +L + + ++ + ++ +DE +E V + L
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDL 132
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
R +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 133 RDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G+TV+ H + + FD + + R
Sbjct: 188 EGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
+RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ LR+ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 31/213 (14%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 931
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 932 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID-EVMELVELNPLRQS 989
+ GY Q+ D ++ E LL L+ + + + D ++ L E +PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAETVLKDLDLYALKERHPL--- 125
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 126 --------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK 177
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082
V+ H D FL K + + +
Sbjct: 178 AVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 18/222 (8%)
Query: 868 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927
+ L VS G L+G +G+GK+TL+ +L G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 928 ET----FARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 982
E + G QN F T+ + + F L E + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVG 127
Query: 983 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1043 NTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
+ G+T++ H + E D + ++ G+ + G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 5e-20
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--- 925
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 926 KQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 982
E + + + QN P++ TI E++L + P+ E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENILLAR-----PDASDEE----IIAALDQAG 435
Query: 983 LNPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
++ ++ +TV+ H+ D +A D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 6e-20
Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 863 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 919
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 920 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFID 975
++ +K+ + + G+ QN + P +T+ E++ + + RK +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 976 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
E++E++ L S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1036 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
V+ +R + G+T++ H P ++ + D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 9e-20
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 933 IS-GYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
G Q+ + + + + + F L L R+ + E + V + LR+
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVGASGLRE 122
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
LS ++KR+ IA + P ++ +DEPT+GLD ++ +R G
Sbjct: 123 RPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
Query: 1049 RTVVCTIH 1056
TVV + H
Sbjct: 178 MTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 4e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1055
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1056 HQPSIDIFEAFDELFLMKRG 1075
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 6e-19
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--K 925
++GV+ R G + +G +GAGKTT + +L R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
+ R G Q +T E+L L P+ ++E R +E++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 1046 DTGRTVVCTIH 1056
+ G T++ T H
Sbjct: 172 EEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 9e-19
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQ---E 928
+L +S PG A++G SG+GK+TL+ +L G Y G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 929 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVEL 983
+ R GY Q+ PF+ +I E++ +PE E + E +E
Sbjct: 544 SLRRQVGYVLQD----PFLFSGSIRENIALG-----NPEATDEEIIEAAQLAGAHEFIEN 594
Query: 984 NPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
P+ + VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 595 LPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 1043 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ GRTV+ H+ S + D + ++ +G
Sbjct: 654 -QILQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 3e-18
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 55/254 (21%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+ LK VS I+ G ++GP SGK+TLL L G PT SG V +G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTD 67
Query: 219 MDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
+ + + AA ++ Q N + ++T E + GV + RRE+
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-------ERRER 120
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A + L+ +GL + E+ SGGQ++R
Sbjct: 121 AEEL---------------------------LERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 332 VTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
V + P + + DE TG LDS T +++ LR+ ++ +GT ++ ++ PE
Sbjct: 149 VAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELA 204
Query: 390 DLFDDIILLSDGQI 403
+ D II L DG+I
Sbjct: 205 EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-18
Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 50/254 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
LKDVS I+ G LL+GP SGK+TLL L G L PT SG V +G D
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75
Query: 225 --QRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ + Q+ D+ + TV + +AF G+ RE+
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-----------PREE---------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVG 340
++ E L+++GL+ D +SGGQK+RV G + +G
Sbjct: 115 ---IEERVAE----------ALELVGLEELL-----DRPPFNLSGGQKQRVAIAGVLAMG 156
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P + L +DE + GLD +++ L++ + G +I + + D +++L D
Sbjct: 157 PEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214
Query: 401 GQIVYQGPRELVLE 414
G+I+ G +
Sbjct: 215 GKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 5e-18
Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 930
+ GVS R G + L+G +GAGKTT + +L + T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R G Q+ +T +E+L A L V R+ IDE+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1049
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1050 TVVCTIHQPSIDIFEA---FDELFLMKRG 1075
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 6e-18
Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 41/257 (15%)
Query: 817 QSSSQSLSLAEAEASRPKK-KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLL 875
+++++L A RP K V SL F V + + L
Sbjct: 291 VAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVA------------YPGRRPAL 338
Query: 876 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFAR 932
VS PG AL+G SGAGK+TL+++L G T G I + ++ +++
Sbjct: 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD--ADSWRD 396
Query: 933 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
+ Q+ PF+ TI E++ + P+ I E +E L+ +
Sbjct: 397 QIAWVPQH----PFLFAGTIAENIRLAR-----PDASDAE----IREALERAGLDEFVAA 443
Query: 990 L-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
L GL G +GLS Q +RL +A + + ++ +DEPT+ LDA A V+ +R
Sbjct: 444 LPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA 503
Query: 1044 TVDTGRTVVCTIHQPSI 1060
+ GRTV+ H+ ++
Sbjct: 504 -LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-18
Identities = 68/284 (23%), Positives = 110/284 (38%), Gaps = 75/284 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S IK G L LLGP +GK+TLL +AG P +G + NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ ++ D +G MTV + +AF + + E +E R + +
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-- 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L + + D +SGGQ++RV
Sbjct: 122 ------------------------------LRLVQLEGLADRYPAQLSGGQRQRVA---- 147
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ ALA L +DE LD+ ++ LR+ +H G + + E +L
Sbjct: 148 -LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALELA 205
Query: 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 206 DRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 83.6 bits (208), Expect = 1e-17
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 927
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 928 ------ETFARISGYCEQNDIHSPF--VTIYESLL--------FSAWLRLSPEVDSETRK 971
TF Q F +T+ E+++ L + + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 972 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+E++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1032 RAAAIVMRTVRNTVDTGRTVV 1052
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 904
+ F V +S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 905 LAG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 961
LAG + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 962 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLP---------GVSGLSTEQRKRLTIAVE 1012
P D E ++ EL + + P GLS QR+ + +A
Sbjct: 103 -PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 1013 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D + +M
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVM 211
Query: 1073 KRG 1075
G
Sbjct: 212 DSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 928
+L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 929 TFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 983
R G Q + + T++E++ F LR E ++ +E+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 984 NPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 ---KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1039 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R+ G T + H F D + ++ G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA- 931
++GVS +PG +T L+G +GAGKTT + +LAG G T+ G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 932 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R G+ + +T E+L + A L + + ++E+ + + + L
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR 133
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 1051 VVCTIH 1056
++ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-ITISGYPKKQETFA 931
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 932 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R G Q+ P +YE++ F+ L ++ E RK V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRK----RVPAALELVGLSHKH 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1051 VVCTIHQPSI 1060
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-17
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 931
L+GVS PG A++G SG+GK+TL+ LAG + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
R C Q D H T+ E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 992 -GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 1046 DTGRTVVCTIHQP 1058
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 80.5 bits (200), Expect = 3e-17
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 930
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
+ Y Q + LFS +R + +
Sbjct: 75 RKNIAYVPQ-----------DPFLFSGTIR--------------ENI------------- 96
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 97 --------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
V+ H+ S D + ++ G
Sbjct: 148 VIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 4e-17
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
GY Q D P++T+ +++ L L +E R + EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 993 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1046
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 1096
TG+TV+ H DI EA +FL + V L +++ E
Sbjct: 181 TGKTVLLVTH----DIDEA---VFL----ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 27/224 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 929
L ++ PG A++G SGAGK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 930 FARISGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMEL 980
RI G Q+ +T+ E++L + + L E D E ++ V L
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-GL 135
Query: 981 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
+ R LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 136 ADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187
Query: 1041 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
++ + G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 188 LKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 5e-17
Identities = 70/268 (26%), Positives = 102/268 (38%), Gaps = 69/268 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+LK V ++ G + ++GP SGK+TLL + G L P SG V +G D+
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
R + Q +TV E +AF R T L+ E
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR---------EHTRLSEEE--------- 112
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
++ I E L+ +GL D + +SGG KKRV
Sbjct: 113 -----IREIVLEK----------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
ALA L DE + GLD + I + L +++ G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFA 202
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFAS 418
+ D I +L DG+IV +G E E AS
Sbjct: 203 IADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 21/207 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGYPKKQE---T 929
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 930 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
AR+ +Q + +++ ++L + A L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1048
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 5e-17
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 33/205 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 931
L VS + PG AL+G SGAGK+TL+ L G T G + + T I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 932 RI-SGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMELV 981
R G Q +++ E++L + + L P+ + + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALAAL 129
Query: 982 ELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
E VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 130 ER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1037 VMRTVRN-TVDTGRTVVCTIHQPSI 1060
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 5e-17
Identities = 72/257 (28%), Positives = 104/257 (40%), Gaps = 62/257 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
++DVS + G +T LLG +GKTTLL +A L P SG VT +G D R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRD 69
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+++ + IG +T RE L + AR L L+R+E A I
Sbjct: 70 PSFVRR---KIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
A + K L L D VG S G K++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE ++GLD T + + ++Q N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSDGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 9e-17
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
I E + P +T E+L A L + IDEV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1053 CTIHQ 1057
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 76/258 (29%), Positives = 113/258 (43%), Gaps = 55/258 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
LKDVS I PG L+GP +GK+TLL L G ++PT SG+V +G D+++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 226 --RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPD 278
R I Q N I ++V E + L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------LGRRSTWRSLFGLF 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-M 337
P + K A L+ +GL A D++ SGGQ++RV +
Sbjct: 118 PKEE---KQRALA----------ALERVGLLDKAYQRA-DQL----SGGQQQRVAIARAL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----F 392
M P L L DE LD +++ Q+++ L++ I+ G T ++SL Q DL
Sbjct: 160 MQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYA 212
Query: 393 DDIILLSDGQIVYQGPRE 410
D I+ L DG+IV+ GP
Sbjct: 213 DRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-16
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 29/237 (12%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 926
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
R G Q+ P +T+ E++ F L++ ++ K ++E +ELV L
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1045
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1046 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGPLGRHSCHLI 1092
+ G T V H D EA D + +M G +EIY P R I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 931
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 932 RIS-GYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 984
R G Q P +++ E++L S W L E + +D L +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---LERVG 136
Query: 985 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 1042
L ++ S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 137 ILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 1043 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
N D G TV+ +HQ +D+ + + + + + G+ ++ GP
Sbjct: 194 NQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 72/266 (27%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTY 214
+I + LKDV+ I+ G ++GP SGK+T LL L G LD PT SG V
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPT---SGEVLI 64
Query: 215 NGHDMDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267
NG D+ + + A ++ Q+ N + ++TV E + G
Sbjct: 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-------- 116
Query: 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327
RR++AA + L+VLGL+ + +SGG
Sbjct: 117 RRKRAA--------------------------EELLEVLGLEDRLL----KKKPSELSGG 146
Query: 328 QKKRVTTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVI-- 379
Q++RV + AL + DE TG LDS T +++ LR+ ++ G +I
Sbjct: 147 QQQRV-----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMV 199
Query: 380 --SLLQPAPETYDLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 200 THD-----PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-16
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 66/276 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKDV+ I+ G +LLGP GK+TLL +AG +PT SG + +G D+ + P+
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
R A + Q H MTV E +AF + +GV E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
K+LGL+ + +SGGQ++RV +
Sbjct: 118 ------------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARAL 148
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V +DE + LD+ + + + + +H GT I + E L D I+++
Sbjct: 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVM 207
Query: 399 SDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+DG+I G P EL + P VA F+
Sbjct: 208 NDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-16
Identities = 71/273 (26%), Positives = 109/273 (39%), Gaps = 54/273 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L DV+ + G L LLGP SGK+TLL +AG P SG + NG D +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R ++ QH +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+KA E L+++ L +GD +SGGQ++RV +
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE LD+ ++ + LR+ T V + E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G P E+ + P V FL EV
Sbjct: 211 QIGSPDEV---------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 928
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 929 TFARIS-GYCEQNDIHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 982
F R GY QN F T+ E+L L+ E R+ E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREKKK-EALEKVG 123
Query: 983 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
LN L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 1042 RNTVDTGRTVVCTIHQPSI 1060
D G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 5e-16
Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 76/272 (27%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
P+ + L DVS IK G L+G SGK+TL A+ G L PT SG++ ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGK 67
Query: 218 DMDEFVPQ------RTAAYISQHD-----NHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266
D+ + + + + Q D N MT+ E +A R G ++ E +
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSKKEAR-KE 123
Query: 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326
A G+ + V + +SG
Sbjct: 124 AVLLLLVGVGLPEE-----------------------------------VLNRYPHELSG 148
Query: 327 GQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-- 379
GQ++RV + ALA L DE ++ LD S QI++ L++ + G ++
Sbjct: 149 GQRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFI 202
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 203 THDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 930
VL +G+S G L G +G+GKTTL+ ++AG G I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
A Y + P +T+ E+L F A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL---- 120
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 1051 VVCTIHQPSIDIFEA 1065
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ETFARISGYCE 938
+T + G SGAGK+TL+ +AG + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 939 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 998
Q P + + E+L F R D ++ +DE+++L+ L+ L +
Sbjct: 82 QQYALFPHLNVRENLAFGL-KRKRNRED----RISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1057
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 1058 PSIDIFEAF---DELFLMKRG 1075
S EA D + +M+ G
Sbjct: 192 LS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 9e-16
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFAR--IS 934
VS G +T L+G +GAGKTTL+ ++A +G +TI G + +F R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994
+ +++ +T E+L + A L + + R I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG-- 132
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 1055 IH 1056
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-16
Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 42/274 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
R QN P +T+YE++ F LR P+ + + R + EV +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 1049
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 1050 TVVCTIHQPSIDIFEA---FDELFLMKRGG-------QEIYVGPLGRHSCHL-ISYFEAI 1098
T + H D EA D + +M G E+Y +L ++ F
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDGRIQQVGTPLELY-----ERPANLFVAGFIGS 236
Query: 1099 PGVQKIKDGYNPATWMLEVSAASQELA----LGI 1128
P + +K L + + LGI
Sbjct: 237 PPMNFLKAEVKADGNGLSIPEDKKVALEQVILGI 270
|
Length = 338 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 17/219 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
G+ Q+ P +T+ +++ F +R ++E R ++E++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-VEELLRLVQLEGLADR--- 133
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1051
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGP 1083
V H + E D + ++ +G E+Y P
Sbjct: 192 VFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L D+S ++PG LLGP GKTTLL +AG P SG + +G D+ P
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q +TV E +AF + +GV E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L+++GL+ + + +SGGQ++RV + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD+ ++ L++ + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 930
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 931 ARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 984
AR EQ+ + +T+ + + S W SP + + EL L
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR--TELSHL- 130
Query: 985 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 131 -------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 1045 VDTGRTVVCTIH 1056
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 929
DKLV+ +G+S + G L+G +GAGKTT + +L G G+I++ G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 930 -FARIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
AR G Q D P T+ E+LL F + LS + R + V L+E L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL----VPPLLEFAKL 128
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
V LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 129 ENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1047 TGRTVVCTIH 1056
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 927
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 928 ------ETFARISGYCEQNDIHSPFVTIYESLL--------FSAWLRLSPEVDSETRKMF 973
TF Q P +T+ E++ S L E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR- 127
Query: 974 IDEVMEL---VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ EL V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 128 -ERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 1031 ARAAAIVMRTVRNTVDT-GRTVV 1052
+ +R D G T++
Sbjct: 182 PEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQE 928
DK V+ NG+S G L+G +GAGK+T+ ++ G + G IT+ G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 929 TFARIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVM-ELVELNP 985
AR G Q D T+ E+LL F + +S TR+ I+ V+ L+E
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFAR 161
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
L +S VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ +
Sbjct: 162 L-ESKADAR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219
Query: 1046 DTGRTVVCTIH 1056
G+T++ T H
Sbjct: 220 ARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L+D+S ++ G +T L+GP +GK+TLL A+ G L P+ SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L +++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ EA L+ +G+ + D I +SGGQK+RV +
Sbjct: 119 -------KVDEA-------LERVGM-----EDLRDRQIGELSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL---LQPAPETYDLFDDIILLSD 400
L +DE TG+D + +I + L++ + G V+ + L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKE-LR-QEGKTVLMVTHDLGLVM---AYFDRVICL-N 213
Query: 401 GQIVYQGPRELVLE 414
++ GP E VL
Sbjct: 214 RHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 64/266 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK V+ +K G + ++GP SGK+TL +AG P+ +V SGT+ + G D+ E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLELEPD 72
Query: 226 RTAA---YIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
A +++ Q+ I ++ E L + ARR + + +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSA----RGEEPL 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRVTTGE 336
D + + L +LG+D +E + G SGG+KKR +
Sbjct: 115 D--LLDFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQ 157
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS-------LLQPAPET 388
M + P LA+ +DEI +GLD + + + + +I+ ++P
Sbjct: 158 MALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP---- 212
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLE 414
D + +L DG+IV G EL E
Sbjct: 213 ----DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 22/213 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 930
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 931 ARISGYCEQNDIHS-PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
AR QN + PF T+ E + S E ++ + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERI-AAQALAATDLSGLAGR 131
Query: 990 LVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 D-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1075
G V+ +H +++ + D + L+ +G
Sbjct: 187 LAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 927
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
E++ + Y +T E+L F W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1048 GRTVVCTIHQP 1058
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 6e-15
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 49/255 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
LKDV+ I G + ++GP +GK+TLL +L G +DPT SG + +NG + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 225 -----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+R I Q N + ++V E + +L L +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENV--------------LLGRLGYTSTWRSLFGLF 120
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ +A+ + ++ Y + A T+ SGGQ++RV +V
Sbjct: 121 SKEDKAQALDAL-ERVGILDKAYQR-------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL----FDDI 395
+ DE LD + ++++ L+ I+ G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 396 ILLSDGQIVYQGPRE 410
I L G+IV+ GP
Sbjct: 219 IGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 62/264 (23%), Positives = 99/264 (37%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
IL VS + G + LLG +GKTTLL + G L P SG++ ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 QRTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR-----YEMLTELA-RREKA 272
A Y+ + E+TV E L AR + YE+ L RR++
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
AG T+ SGG+++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN-SGTAVISLLQPAPETYD 390
+M P L L +DE S GL +I +R+ + G ++ + Q A +
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 1e-14
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 44/212 (20%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L L DVS ++PG + L+GP +GKTTL ++G L PT SG+V ++G D+ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
A I Q E+TV E + +A+ + T +L ARRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
EA + L+ +GL AD G+ +S GQ++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+ P L L +DE + GL+ T ++ +R+
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-14
Identities = 74/277 (26%), Positives = 115/277 (41%), Gaps = 67/277 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T + D+S IK G LLGP GKTTLL +AG P+ SG + +G D+ + VP
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPP 74
Query: 225 -QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+R + Q H MTV E +AF + + ++ K A I
Sbjct: 75 EKRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEI-- 113
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
KA E L+++GL+ AD +SGGQ++RV
Sbjct: 114 --------KARVEE----------ALELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE + LD+ Q+ L++ + G + + E + D I +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAV 209
Query: 398 LSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++DG+I G P E+ + P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 930
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 931 ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
+ Q+ + S P +TI E + + E RK + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLVGVGLPEEVL 139
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 931
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 932 RIS-----GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
+ G Q +PF +IY+++ + L K +DE +E
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG------IKLKEELDERVE------ 121
Query: 986 LRQSL--VGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
++L L GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 --EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 1037 V 1037
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 24/212 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 930
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQS 989
RI GY + P + + + L++ A L+ L E E R+ IDE +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1050 TVVCTIHQPSIDIFEAF-DELFLMKRGGQEIY 1080
TV+ + HQ +++ E D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 18/188 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 932 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
R+ GY Q S F +T+ E++L A L + + + R+ ++E++E + LR+
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRK 128
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1049 RTVVCTIH 1056
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-14
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---E 928
+L VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 929 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
GY Q+D LFS + E +
Sbjct: 73 ELGDHVGYLPQDDE-----------LFS------------------GSIAENI------- 96
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-KMFIDEVMELVELNPLRQSL 990
R G+ Q+ +T+++++ F ++ E E + + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1049
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 1083
T V H + E D + +M +G E+Y P
Sbjct: 189 TTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 24/216 (11%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 927
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
GY Q D P++T+ +++ LR + ++ R E++ELV L
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER---AKELLELVGLAGFE 124
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1046
P LS R+R+ IA L P ++ +DEP LDA + + +
Sbjct: 125 DKY---PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 1047 TGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEI 1079
T +TV+ H D+ EA D + ++ I
Sbjct: 180 TRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-14
Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 59/265 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L D++ IK G+LT L+G +GK+TLL L G L PT G + NG D+ + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ +++SQ+ ++ T+RE + + + + E + + P PD
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLA---RPDASD-EEIIAALDQAGLLEFVPKPD-- 444
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
GL DT++G+ G+SGGQ +R+ ++ PA
Sbjct: 445 ------------------------GL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIIL 397
L +DE + LD+ T I+ L++ + V+ + T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQE---LAKQKTVLVI------THRLEDAADADRIVV 526
Query: 398 LSDGQIVYQG-PRELVLE--FFASM 419
L +G++V QG EL + +A++
Sbjct: 527 LDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 4e-14
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
++ VS R G L+G SG+GK+TL +LAG + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 932 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
R Q+ S P +T+ + L LR+ R+ + E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 6e-14
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 40/203 (19%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQ--- 927
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFS------AWLRLSPEVDSETR-KMFIDEVMEL 980
AR Q HS SL F + +P S + +
Sbjct: 72 AELARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQ 121
Query: 981 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 1034
V+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 122 VDLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 1035 AIVMRTVRN-TVDTGRTVVCTIH 1056
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 57/250 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---- 221
+L+DVS +KPG ++GP +GK+TLL A+ G L PT SG++ G +++
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKR 69
Query: 222 --FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+VPQR + + ++VR+ + + +
Sbjct: 70 IGYVPQRRSI------DRDFPISVRDVVL-----------------MGLYGHKGLFRRLS 106
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D KA E L+ +GL + + D I +SGGQ++RV +V
Sbjct: 107 KAD---KAKVDEA----------LERVGL-----SELADRQIGELSGGQQQRVLLARALV 148
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDIIL 397
L +DE G+D T I LR+ + T ++ L + FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 398 LSDGQIVYQG 407
L + +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 63/252 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L +VS I+ G ++G SGK+TLL LAG PT SG+V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP----DPD 280
R Y+ Q D + T+R+ + A + +L R + AG+ P+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL----RAAELAGVTDFVNKHPN 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
GL D +G E RG+SGGQ++ V ++
Sbjct: 129 --------------------------GL----DLQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDI 395
L +DE ++ +D ++ ++ LRQ + T +I SLL DL D I
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLL-------DLVDRI 208
Query: 396 ILLSDGQIVYQG 407
I++ G+IV G
Sbjct: 209 IVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 65/269 (24%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
LT + DVS ++PG + L+GP +GKTTL + G P+ SGTV + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQG-----VGTRYEMLTELARREKAAGI 275
R A I+ Q +TV E +A A + +G E RE+A +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
L+ +GL AD G+ +S GQ++R+
Sbjct: 134 ---------------------------LEFVGLGELADRPAGN-----LSYGQQRRL--- 158
Query: 336 E----MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV------ISLLQPA 385
E + P L L +DE + GL+ T ++ +R + G + + L+
Sbjct: 159 EIARALATQPKL-LLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV--- 213
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 214 ---MGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 45/254 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L VS ++PG + +LGP +GK+TLL AL+G+L P SG VT NG ++ + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
A H + +LAF Q V ++ R +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM------V 339
+A+A + GL R +SGG+++RV ++ V
Sbjct: 118 QALAATD------------LSGL--------AGRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
LF+DE ++ LD + + RQ G AV+++L D I+LL
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 400 DGQIVYQGPRELVL 413
G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 71/258 (27%), Positives = 102/258 (39%), Gaps = 49/258 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-R 226
L DVS I G L LLGP SGKTTLL +AG P SGT+ + G D + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ QH MTV + +AF R V R E E R K +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKVHEL----------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
LK++ LD AD +SGGQ++RV + L
Sbjct: 121 ----------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI--- 403
+DE LD+ ++ LR+ +H + + E ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-13
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 67/261 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
L +VS I+PG ++G SGK+TLL L G PT G+V +G D+ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG----IKPDPD 280
+R Y+ Q D + T+R+ +A A E + A AG ++ PD
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEILRAAEL---AGVTEFVRRHPD 589
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
GLD +G E R +SGGQ++ V ++
Sbjct: 590 --------------------------GLD----MQIG-ERGRSLSGGQRQAVALARALLR 618
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
P + L +DE ++ +D+ + + + L++ + +G ++ SLL DL D
Sbjct: 619 DPPI-LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTLVLVTHRTSLL-------DLVD 667
Query: 394 DIILLSDGQIVYQGPRELVLE 414
II++ +G+IV GP++ VLE
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 930
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 931 ARISGYCEQNDIHSPF--VTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVE 982
AR G + + F +T+ E+L S + L + +E R+ IDE++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 983 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 72/297 (24%), Positives = 109/297 (36%), Gaps = 87/297 (29%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK V+ +K G + ++GP SGK+TL + G P +V G + ++G D
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGED------- 69
Query: 226 RTAAYISQHDNHIGEMTVRE------TLAFS--ARCQGVGTRYEMLTELARREKAAGIKP 277
I E++ E LAF GV A +
Sbjct: 70 ------------ILELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGI 115
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRV 332
P+ +K A ++LGLD +E + G SGG+KKR
Sbjct: 116 LPEFIKELKEKA--------------ELLGLD--------EEFLERYVNEGFSGGEKKRN 153
Query: 333 TTGEMMV-GPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPET 388
++++ P LA+ +DE +GLD + +N LR+ G +I+ Q
Sbjct: 154 EILQLLLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREE---GRGVLIITHYQ----- 204
Query: 389 YDLFDDII-----LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 440
L D I +L DG+IV G EL E + KG + V
Sbjct: 205 -RLLDYIKPDKVHVLYDGRIVKSGDPELAEEL---------EEKGYDWLKEVVGGEA 251
|
Length = 251 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 32/214 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 932 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
+ G Q F+ TI E++ + E + +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIM 123
Query: 989 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 1042 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ GRT + H+ S I A D++ ++ G
Sbjct: 183 EKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 935 GYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 993
GY E+ ++ P +T+ + L + A L+ P+ + + + + +E R +VG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLE-------RLEIVGK 123
Query: 994 PG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL-------GR-----HSCHLISYFEAIP 1099
+ + H+ + E D L ++K+ GQ + G + G+ S + IP
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIP 241
Query: 1100 GVQKIK 1105
G+ KI
Sbjct: 242 GILKIT 247
|
Length = 300 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 62/254 (24%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---- 218
L VS + PG + LLGP +GKTTL+ LA P+ SGT+ +G D
Sbjct: 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R Y+ Q TVRE L + A +G+ P
Sbjct: 67 PQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PS 104
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
++ + D L+++ L + I +SGG ++RV + +
Sbjct: 105 KEVK---ARV-----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 339 VG-PALALFMDEISTGLDSSTTFQIVNCLRQ----NIHINSGTAVISLLQPAPETYDLFD 393
VG P++ L +DE + GLD + N L + I I S T ++ ++ L +
Sbjct: 146 VGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILS-THIVEDVE------SLCN 197
Query: 394 DIILLSDGQIVYQG 407
+ +L+ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 52/214 (24%), Positives = 78/214 (36%), Gaps = 48/214 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ +S + G +L GP SGKTTLL +AG L P +GT+ +G D+D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +TV E L F A G + DI
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAA-- 110
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
A+ +GL A G +S GQK+RV ++V
Sbjct: 111 -ALEA---------------VGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE + LD++ +R H+ G VI
Sbjct: 150 ILDEPTAALDAAAVALFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 63/251 (25%), Positives = 95/251 (37%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEF 222
I+ V PG LT LLGP SGK+TLL LAG L P +GTV G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ A + + D L L AD + +SGG+++RV +
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + +R+ +G V++ L D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 57/219 (26%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 922
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 923 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSP 963
YP I G VT L +A R +
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 964 EVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1021
+ E K + E EL+ L+ L + + G S ++KR I L+ P +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAI 167
Query: 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
+DEP SGLD A IV + + GR V+ H +
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 858 MPEEMKVQ--GV---LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKT 910
E ++ GV D+++L +GV G + A++G SG+GK+TL+ ++ G R
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVIL-DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 911 GGYI---TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 967
G I +I + E R+ G Q +T++E++ F LR
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR------- 111
Query: 968 ETRKMFIDEVMELVELNPLRQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIF 1021
E K+ + ELV + LVGL G S LS RKR+ +A + +P ++F
Sbjct: 112 EHTKLPESLIRELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 1022 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1057
+DEPTSGLD +A ++ +R D G TV+ H
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARIS 934
VS G + L+G +GAGKTT ++ G R G I + IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994
GY Q +++Y++L+ A L++ ++ +E R+ +E+ME + LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1055 IH--QPSIDIFE 1064
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 21/211 (9%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQE 928
V+L+ VS G +T+++G +GAGK+TL+ + R +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 929 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
++S ++N I+S T+ + + F + + E R++ I+E +E + L L
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFGRFPYSQGRLTKEDRRI-INEAIEYLHLEDLSD 130
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1047
+ LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 131 RYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 1048 GRTVVCTIHQPSIDIFEA---FDELFLMKRG 1075
G+T+V +H DI A D + +K G
Sbjct: 186 GKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 2e-13
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK-KQETFA 931
V++N +S G L+G +GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 932 RIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
R++ G Q D P T+ E+LL F + +S + + I ++E L +S
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARL----ES 127
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
+ V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 128 KADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 1050 TVVCTIH 1056
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 863 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITI 920
V G + LN VS G ++G SG+GK+TL +LAG + + +G+I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 921 SG--YPKKQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFI 974
G K+ F R Q+ S P T+ L + I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----I 121
Query: 975 DEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
E+++ V L P L + L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 55/256 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--- 222
LK+++ I PG ++GP +GK+TLL + ++P+ SG++ G D+ +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 223 ----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R I QH N I +TV E + R T +L + +K
Sbjct: 73 KLRKLRRRI-GMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK------- 123
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-M 337
+A+ L+ +GL A D++ SGGQ++RV +
Sbjct: 124 ------ERAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAIARAL 160
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----F 392
P L L DE LD T+ Q+++ L+ I+ G T +I+L Q DL
Sbjct: 161 AQQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINLHQ-----VDLAKKYA 213
Query: 393 DDIILLSDGQIVYQGP 408
D I+ L G+IV+ G
Sbjct: 214 DRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 927
+ +L G+S G + G +G GKTTL+ +LAG R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
+ R Y P ++ E+L F W + I++ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1048 GRTVVCTIHQP 1058
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-13
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS----GEILIDGKP------VA 73
Query: 933 ISGYCEQND-----IH-----SPFVTIYESLLFSAWL-RLSPEVDSETRKMFID--EVME 979
S + +H P +++ E++ R +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 980 LVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ L+ V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 1039 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 379
+RG+S Q+KR+T G + LF+DE ++GLDS + IV L+ + +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILC 163
Query: 380 SLLQPAPETYDLFDDIILL-SDGQIVYQG 407
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-13
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 41/204 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
L+ VS + PG L+GP +GK+TLL L G +DPT G++ NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ A++ QH + T+ E + E+ + AG+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEIREALERAGL--------- 437
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+ +A Q GL DT +G+ G+SGGQ +R+ + A
Sbjct: 438 DEFVAALPQ-------------GL----DTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQ 368
L +DE + LD+ T +++ LR
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRA 503
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 4e-13
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 929
L GVS G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 930 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 985
R GY + P +T+ E+LL A+ R + + ++ V EL L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
R+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 1046 DTGRTVV 1052
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 5e-13
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM---DEF 222
T L D+S ++ G + LLGP +GKTTL+ + G L P SG + G D+ E
Sbjct: 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFS 250
V +R Y+ + + +TVRE L S
Sbjct: 71 VKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 6e-13
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L G++ + G +TA++G +GAGK+TL L G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 933 IS-GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
S G Q+ + F ++Y+ + F A PE + R +D ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR---VDNALKRTGIEHLKDK- 137
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1049
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 ----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 1050 TVVCTIHQPSIDIFEAF-DELFLMKRG 1075
T++ H IDI + D +F+MK G
Sbjct: 194 TIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 7e-13
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 94/278 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L P SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VYMKAI--ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
V M E + + L + L + +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV-------- 143
Query: 341 PALA---------------LFMDEISTGLDSS---TTFQIV-NCLRQNIHINSGTAVISL 381
LA L +DE ++ LD + ++ + G AVI +
Sbjct: 144 -QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVIVV 197
Query: 382 LQPAPETYDL------FDDIILLSDGQIVYQGPRELVL 413
L +DL D I+LL G++V G VL
Sbjct: 198 L------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 8e-13
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 52/252 (20%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM- 219
K+ + + VS +KPG +T LLGP +GKTT L LAG L+P +G T +G D+
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 220 -DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R ++S +T RE L + A G+
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL---------------------- 108
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+G E + LG++ D VG G S G +++V +
Sbjct: 109 ------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 339 VGPALALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
V L +DE +TGLD + + + LR G ++ E L D +
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQEVERLCDRV 206
Query: 396 ILLSDGQIVYQG 407
++L G++VY+G
Sbjct: 207 VVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-13
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+T L+D+S ++ G L+GP GK+TLL +AG PT SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEE---- 114
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV----TT 334
L+++GL + +SGG ++RV
Sbjct: 115 -----------------------LLELVGLSGFE-----NAYPHQLSGGMRQRVALARA- 145
Query: 335 GEMMVGPALALFMDE 349
+ V P + L +DE
Sbjct: 146 --LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 9e-13
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 81/278 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL V + G + +LG SGK+TLL + G L P G + +G D+ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ Q +TV E +AF L E + P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 280 DID--VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
I V MK L+++GL D +SGG +KRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV----- 154
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPAP 386
ALA LF+DE ++GLD + I +R +N G VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLD 207
Query: 387 ETYDLFDDIILLSDGQIVYQGPRE--------LVLEFF 416
+ D + +L+DG+++ +G E V +FF
Sbjct: 208 SLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245
|
Length = 263 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-13
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 34/205 (16%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 924
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 925 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME----- 979
R G Q E++LF+ +R + M ++ V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 980 -----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1035 AIVMRTVRNTVDTGRTVVCTIHQPS 1059
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 1e-12
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+LKDVS IKPG ++GP SGK+TLL L DPT SG + +G D+ + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 226 --RTAAYISQHDNHIGEMTVRE 245
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA-RI 933
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 934 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 993
G+ Q+ +T+ +++ F +R + K ++E++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDR---Y 127
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 1052
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 1053 CTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 1083
H + E D + +M G E+Y P
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 66/277 (23%)
Query: 148 FEDI-LNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL 206
F+++ Y PS+ ILK +S I PG+ L+G GK+T++ L DPT
Sbjct: 3 FKNVSFRY----PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT- 56
Query: 207 KVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
SG + +G D+ + + +SQ + + + T+ E + +
Sbjct: 57 --SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------- 100
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
KPD + +A +AN I D+ ++ L DT+VG+ RG
Sbjct: 101 ------------KPDATDEEVEEAAK----KAN-IHDF---IMSLPDGYDTLVGE---RG 137
Query: 324 --ISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 379
+SGGQK+R+ ++ P + L +DE ++ LD+ + + L T VI
Sbjct: 138 SQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIA 195
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV 412
S ++ A D I +L +GQ+V QG EL+
Sbjct: 196 HRLSTIRNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 36/174 (20%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 932 RISGYCEQNDIHSPFVTIYESL---------------LFSAWL-RLSPEVDSETRKMFID 975
R +G + P T++E+L +F++ RLS E I+
Sbjct: 76 R-AGIGRK--FQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IE 125
Query: 976 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
EV+E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 126 EVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-12
Identities = 67/251 (26%), Positives = 102/251 (40%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+L+D+S I PG ++G SGK+TLL L G P G + +G D+++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R Y+ Q D + ++RE +A E + E A+ AG
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN----PEATDEEIIEAAQL---AGAHEF----- 591
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ L + DT VG E +SGGQ++R+ ++
Sbjct: 592 ---------------------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPK 629
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD T I+ L Q I G VI ++ T D II+L G+I
Sbjct: 630 ILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGKI 685
Query: 404 VYQGPRELVLE 414
V QG E +L
Sbjct: 686 VEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 46/235 (19%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGH-DMDEFVPQRTAAYIS 232
+T + G +GK+TLL +AG P + ++GTV ++ ++ QR +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
L +LGLD + + +SGG+K+RV + L +DE +
Sbjct: 116 ----------LDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD + Q++ L+Q I N VI + E L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 72/272 (26%), Positives = 112/272 (41%), Gaps = 68/272 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF- 222
+LKDVS I G+ ++GP SGK+T+L L D + SG++ +G D+ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVT 69
Query: 223 ----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
VPQ T + +D T+ + + R A
Sbjct: 70 LDSLRRAIGVVPQDTVLF---ND------TIGYNIRYG------------------RPDA 102
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKK 330
D +V A A + I D K++ DT+VG+ RG +SGG+K+
Sbjct: 103 T------DEEVIEAAKAAQ------IHD---KIMRFPDGYDTIVGE---RGLKLSGGEKQ 144
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
RV ++ L +DE ++ LD+ T +I LR G I + +
Sbjct: 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS---KGRTTIVIAHRLSTIVN 201
Query: 391 LFDDIILLSDGQIVYQG-PRELVLE--FFASM 419
D II+L DG+IV +G EL+ + +A M
Sbjct: 202 A-DKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 2e-12
Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 115/268 (42%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
LKD++ + G L ++GP SGK++LL AL G+L+ K+SG+V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ AY+SQ N T+RE + F G ++
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFDE--------------------- 94
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQK 329
+ Y KV + CA T +G+ +GI SGGQK
Sbjct: 95 ----------------ERYEKV--IKACALEPDLEILPDGDLTEIGE---KGINLSGGQK 133
Query: 330 KRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV- 378
+R+ +LA +D+ + +D+ I NC+ + +N+ T +
Sbjct: 134 QRI---------SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRIL 183
Query: 379 ----ISLLQPAPETYDLFDDIILLSDGQ 402
+ LL A D I++L +G+
Sbjct: 184 VTHQLQLLPHA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 53/246 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL----DPTLKVSGTVTYNGHDMDEF 222
+L D++ I PG + +L GP SGKTT LL L G L + +LKV G Y + +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+R YI Q N +G +T R Q V E+ L+ +E
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE--------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM---IRGISGGQKKRVTTGEMMV 339
+A A L+ +GL GD + +SGGQK+RV +V
Sbjct: 121 ---RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
P L + DE + LDS + +V +++ G ++ ++ D+ D I+ +
Sbjct: 158 HRPKL-VLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADRIVHM 214
Query: 399 SDGQIV 404
DG+++
Sbjct: 215 EDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 2e-12
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 23/200 (11%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS------GY 936
RPG L+GV+GAGKTT +L G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 937 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996
C Q D +T E L A LR P +E + + ++ + L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVP---AEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 1057 QPSIDIFEAF-DELFLMKRG 1075
S++ EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 59/259 (22%), Positives = 96/259 (37%), Gaps = 67/259 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+ L+ VS ++ G + LLG +GKTTLL + G + P SG + ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PQRTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR------YEMLTELA-RRE 270
P A AY+ + +TV E L AR YE+ L RR
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRN 131
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ AG T+ SGG+++
Sbjct: 132 QRAG---------------------------------------TL---------SGGEQQ 143
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
+ +M P L L +DE S GL +I +++ + G ++ + Q A
Sbjct: 144 MLAIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFAL 201
Query: 390 DLFDDIILLSDGQIVYQGP 408
++ D +L +G+IV G
Sbjct: 202 EIADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 933
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 934 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVG 992
G QN+ P++ + +++ F LR ++ R+ +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 930
+LN +S + G +TAL+G +G GK+TL+ A T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 931 ARISGYCEQNDIHSPFVTIYE------SLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984
AR Q+ + +T+ E S S W RLS E +++ ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRIN 129
Query: 985 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1045 VDTGRTVVCTIHQPSIDIFEA---FDELFLMKRGG 1076
G+TVV +H D+ +A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
+N VS G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 932 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVELNPL 986
R+ GY Q S F +T+ ++++ A L + E D + RK +D ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHL 132
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
R S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 1047 TGRTVVCTIH 1056
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-12
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--- 927
K L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
ETF + GY Q D+ T+ E++ R D E +++E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVH 434
Query: 988 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1039 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080
++ G TVV H+PS + D++ +++ G +
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 44/240 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T L D++ I G +LLGP GKTT L +AG +PT SG + G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
++ +A ++L ++ + D + +SGGQ++RV G +V
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
MDE + LD+ Q+ L+ + GT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
I E ++ +T E+L L P DS IDEV+ +V+L G
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTN-----TG 118
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-12
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 44/216 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEFV 223
+L VS + PG +LGP SGK+TLL LAG LDP G VT +G +D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + +Q D H+ + TVRE L + T E+ L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR--- 455
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
L DT++G E +SGG+++R+ ++ A
Sbjct: 456 -----------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
L +DE + LD+ T +++ L SG V+
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-12
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 840 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899
L S+ F+ V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 900 TLMDVLAGRKTGGYITGNITISGYPKKQETFA---RISGYCEQNDIHSPF-VTIYESLLF 955
TL+ +L +G I I G + + + G Q+ + F TI E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL--FSGTIRENIAL 425
Query: 956 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1015
E++ + E + L ++VG GV LS QR+RL IA L+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIARALLR 482
Query: 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
NP I+ +DE TS LD A++ ++ + GRT + H+ S + D + ++ G
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 5e-12
Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 46/211 (21%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNITISG---YPK 925
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 926 KQETF---ARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 981
+ +T I +Q + PF ++IYE++++ LRL D K +DE +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKD----KQVLDEAVE-- 126
Query: 982 ELNPLRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+SL G GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 127 ------KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
Query: 1031 ARAAAIVMRTVRNTVD--TGRTVVCTIHQPS 1059
+A + T+ D T V ++ Q S
Sbjct: 181 PISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-12
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL D+S + G++T L+GP GK+TLL A L P SGTV + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A ++ QH +TVRE +A+ R L+ R
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYG--------RSPWLSLWGRL------------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
E N + ++ ++ AD + D +SGGQ++R ++
Sbjct: 112 ---------SAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD + +++ +R+ G V+++L + D +++L++G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 403 IVYQGPRELVL 413
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 6e-12
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 931
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 932 R--ISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQ 988
R ++ + + + I + FS LR L TR+ +DE + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR--VDEALTLVDAQHFRH 131
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 1049 RTVVCTIHQPSID-IFEAFDELFLMKRG 1075
V+ + H ID I+E D ++++++G
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 7e-12
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IH 943
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 944 SPFVTIYESLLFSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997
F + E ++ WLR + + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 930
L G+S G + +G +GAGKTT + +L+G + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVELNPLRQS 989
RI Q + + +S A + L P + DE+ EL++L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLDT 149
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1048
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 -----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 1049 RTVVCTIH 1056
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 8e-12
Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 927
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 928 ---ETFARISGYCEQNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMEL 980
G Q P TI E++ + EV+ +K I + +M L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 981 VELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 ----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1040 TVRNTVDTGRTVVCTIH 1056
+ + GRT + H
Sbjct: 181 AL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 9e-12
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK 926
+L VS G A++G SG+GK+T++ DV +G I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 927 ---QETFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 978
++ R G Q ND TI ++ + EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 979 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1039 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R V GRT + H+ S I A D++ ++K G
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 889 ALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSP 945
++G +G+GK+ L++ +AG + G I N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 946 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM---ELVELNPLRQSLVGLPGVSGLSTE 1002
+T+Y+++ + R + + E + + I E++ L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1062
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1063 FEAFDELFLMKRG 1075
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 49/198 (24%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S K+ IL D+S + G + L G +GKTTL LAG + + SG++ NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 220 DEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+++ Y+ Q D + +VRE EL K
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD---- 101
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EM 337
N + LK L L + +SGGQK+R+ +
Sbjct: 102 ---------------AGNEQAETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAAL 141
Query: 338 MVGPALALFMDEISTGLD 355
+ G L L DE ++GLD
Sbjct: 142 LSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI-----SGYPKKQET 929
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 930 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1047
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-E 928
V L+GVS + G L+G SG GKTTL+ ++AG +T +G I + G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 929 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
R QN P +T++E++ F LRL ++ K + E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 865 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924
QG E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 925 -------KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 977
+ + A+ G+ Q+ + P + E++ A LR E ++R +
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGA 127
Query: 978 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFA 931
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
R QN P + + +++ F + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1049
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRG 1075
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +VS +K G + L+GP SGK+TLL A+AG L PT SG + +G D+ + +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLE 69
Query: 226 ---RTAAYISQ 233
R Y+ Q
Sbjct: 70 ELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 61/254 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L DVS ++PGR LLGP +GK+TL L G ++ GHD+ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L LGL A+ D+ +R ++GG ++RV ++ PAL
Sbjct: 117 ------------------LARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVN-----CLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
L +DE + GLD ++ I Q + + T ++ ++ D +++L
Sbjct: 154 -LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 399 SDGQIVYQG-PREL 411
G+++ G EL
Sbjct: 206 HRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 67/263 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHD---MDE 221
LKD+S I G +T L+GP GK+TLL L L P G V +G D +D
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
V + R + Q N ++ + +A+ R G+ + EL R + A
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM-----IRGISGGQKKRVTT 334
L+ L DE+ G+SGGQ++R+
Sbjct: 124 -----------------------LRKAALW--------DEVKDRLHALGLSGGQQQRLCL 152
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETY 389
+ P + L +DE ++ LD +T +I + + + ++ ++ Q A
Sbjct: 153 ARALANEPEV-LLLDEPTSALDPISTAKIEELIAE---LKKEYTIVIVTHNMQQAA---- 204
Query: 390 DLFDDIILLSDGQIVYQGPRELV 412
+ D L +G++V GP E +
Sbjct: 205 RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 56/246 (22%), Positives = 97/246 (39%), Gaps = 53/246 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L D+S ++ G + LLGP +GKTT + + G + P SG V ++G +D +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALA 344
D +L+ L L A ++ + +S G +++V ++ P L
Sbjct: 109 -------------IDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE +GLD ++ L + G VI +L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELARA-----GKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 402 QIVYQG 407
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 87/286 (30%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGH 217
+ + ++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 218 DMDEFVPQ-------RTAAYISQH-----------DNHIGEMTVRETLAFSARCQGVGTR 259
D+ + + A I Q + I E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------H 121
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319
+ AR+ L+ +GL D D
Sbjct: 122 GKGSRAEARKR----------------------------AVELLEQVGLP---DPERRDR 150
Query: 320 MIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+SGG ++RV M+ ALA L DE +T LD +T QI++ L+ ++
Sbjct: 151 YPHQLSGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQREL 204
Query: 375 GTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
G AV+ + T+DL D ++++ G+IV GP E +L
Sbjct: 205 GMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 66/263 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFG--------RFP--------------------- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
Y + T+ E I + ++ L L + D + +SGGQ++R +
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHL-----EDLSDRYLDELSGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------ 391
LA + +DE LD + QI+ LR+ T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 392 FDDIILLSDGQIVYQGPRELVLE 414
D I+ L +G++V QG + +++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 66/277 (23%), Positives = 99/277 (35%), Gaps = 68/277 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L VS IK G LLGP GKTTLL +AG PT SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q+ +TV E +AF R + + E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+ + EG + +SGGQ++RV +V
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQ-------NIHINSGTAVISLLQPAPETYDLFDDIIL 397
L +DE LD LR+ + G + + E + D I +
Sbjct: 152 LLLDEPLGALDLK--------LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAV 203
Query: 398 LSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++ G+I G P E+ + P + VADF+
Sbjct: 204 MNKGKIQQIGTPEEI---------YEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-11
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-P-KKQETFARISGYCEQ 939
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLVMG 104
Query: 940 NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVS 997
+ + +SL L+L E+ + +D + E+++L L+ V
Sbjct: 105 QKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP------VR 155
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIH 1056
LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+ T H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
Query: 1057 QPSIDIFEAFDELFLMKRGGQEIYVGPL 1084
DI D + L+ + GQ ++ G L
Sbjct: 216 IFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
++ V+ G L+G SG+GKTT + ++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 932 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLR 987
R GY Q P +T+ E++ P+ D E K DE+++LV L+P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 1044
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 1045 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEIYVGP 1083
G+T+V H DI EA D + +M G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 74/294 (25%), Positives = 109/294 (37%), Gaps = 77/294 (26%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
+T L DVS I G + ++G +GK+TLL + PT SG+V +G D+
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLT 71
Query: 221 EF--VPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVG--TRYEMLTELARREKA 272
R I QH N + TV E +AF GV + + EL
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL--- 128
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
+ + KA Q +SGGQK+RV
Sbjct: 129 --------VGLSDKADRYPAQ------------------------------LSGGQKQRV 150
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPA 385
+ ALA L DE ++ LD TT I+ L+ IN G ++ L+
Sbjct: 151 A-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHE 201
Query: 386 PE-TYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438
E + D + +L G++V +G V E FA+ PK +F+ E
Sbjct: 202 MEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQET- 929
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 930 --FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
R GY Q P +T+ E++ + +L + E + DE++ LV L+P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLL-KWPKEKIRERADELLALVGLDP-- 125
Query: 988 QSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------ 1040
P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 126 AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEF 178
Query: 1041 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
R + G+T+V H DI EAF D + +MK G
Sbjct: 179 KRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 61/247 (24%), Positives = 96/247 (38%), Gaps = 46/247 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEFVPQ 225
++ VS ++ G + LLGP +GKTT + L L PT SG T GHD+ + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
R + Q + E+T E L AR GV E R
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRER---------------- 111
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
D L +GL D +++ SGG ++R+ +V L
Sbjct: 112 -------------IDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
F+DE + GLD T + + + + G ++ E L D + ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 406 QG-PREL 411
+G P EL
Sbjct: 213 EGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 53/269 (19%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNG 216
+RH IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 217 HDMDEFVPQRTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ R A A + Q + AFSAR + RY ARR A
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH----ARRAGAL 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
+ D ++ +A+A G A +VG + + +SGG+ RV
Sbjct: 119 THR---DGEIAWQALALAG-------------------ATALVGRD-VTTLSGGELARVQ 155
Query: 334 TGEMM---------VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
++ P L +DE + LD + ++++ +R+ + + V++++
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR-LARDWNLGVLAIVHD 214
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVL 413
D I +L+DG IV G VL
Sbjct: 215 PNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-11
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET 929
+L G+S A + G ++G SG+GK+TL +L G +G++ + G +Q E
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQ 407
Query: 930 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF----IDEVMELVELNP 985
R GY Q D+ TI E++ R E D E K+ + V EL+ P
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPE--KVIEAARLAGVHELILRLP 459
Query: 986 L-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ +G G + LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 460 QGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518
Query: 1045 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G TVV H+PS + D++ +++ G
Sbjct: 519 KARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 57/250 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+L+D+S I G L+GP SGK+TL+ + D SG + +GHD+ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R +SQ D + TV E +A+ G E+ +AA
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAY-------GRPGATREEVEEAARAAN--------- 116
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVGP 341
A E I + L DT++G+ RG+ SGGQ++R+ ++
Sbjct: 117 -----AHE-----FIME-------LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIIL 397
L +DE ++ LD+ + + L + + N T VI S ++ A D I++
Sbjct: 157 PPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENA-------DRIVV 208
Query: 398 LSDGQIVYQG 407
L DG+IV +G
Sbjct: 209 LEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 899 TTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS----GYCEQNDIHSPFVTIYESLL 954
+TL+ ++ G +G I + G + ++ G Q+ P +T+ E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 955 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1014
F + +E +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1015 ANPSIIFMDEPTS 1027
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 26/225 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARI 933
L+ V G + AL+G SG+GK+TL+ L+G TG G +I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 934 SGYCEQNDIHSPFV----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 983
+ ++ ++ ++ ++ E++L A L +P + + + L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFS--WFTREQKQRAL 134
Query: 984 NPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
L + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 135 QALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 1039 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082
T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 193 DTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 24/164 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFA 931
L+ VS + G + +G +GAGK+T M ++ G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 932 --RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPL 986
R GY + H+P +Y + +L+ + + K ++E++ELV L P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFA 931
L+ VS R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 932 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R G Q+ P T+YE++ +R E + + R + + V L
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH---KA 131
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 132 DAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 1051 VVCTIHQPSI 1060
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-11
Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 78/270 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFV 223
+ DVS ++ G L+G SGK+TL LAG L P+ SG++ ++G D+D E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 224 PQR-TAAYISQH-----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
R + Q + MTV + LA R G G+ E RR + A +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE------RRARVAEL-- 412
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L+++GL D +SGGQ++RV
Sbjct: 413 -------------------------LELVGL----PPEFLDRYPHELSGGQRQRVA---- 439
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV--IS-----LLQPA 385
+ ALA L +DE + LD S Q++N L+ + G IS + A
Sbjct: 440 -IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYLFISHDLAVVRYIA 497
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLEF 415
D + ++ DG+IV +GP E V E
Sbjct: 498 -------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 5e-11
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 49/182 (26%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 924
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 925 KKQETFA---RISGYCEQ--NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVM 978
K + R+ G Q N PF +IY+++ + LRL D E +DE++
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE-----LDEIV 126
Query: 979 ELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
E + L++ L + GLS Q++RL IA L P ++ MDEPTS
Sbjct: 127 E----SSLKK--AALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1029 LD 1030
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 52/267 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-R 226
LK+VS ++ G ++LGP SGK+ LL +AG + P SG + NG D+ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+Y+ Q+ MTV + +A+ G+ R E+ R+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERK---------------VL 111
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
IA ++LG+D + + +SGG+++RV +V L
Sbjct: 112 EIA--------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T ++ L++ I G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFASMGFRCPKRKGVADFL 433
G E V F+ PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 930
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 931 ARISGYCEQNDIHSPFVTIYESLL--FSAWLRLS-PEVDSETRKMFIDEV-MELVELNPL 986
+ + + F+ + LL F+A ++ P + + E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 1043
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 7e-11
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 60/247 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L ++ I G L+GP +GK+TLL + + PT SGT+ NG D+ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y+ + D + + V E +AF+ GV R E+ +R AA
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L+++GL + +SGG+++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD----II 396
L DE + LD TT++I+N L++ I+ T V+ A +L D +I
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVV-----ATHAKELVDTTRHRVI 207
Query: 397 LLSDGQI 403
L G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-11
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 927
+ L+ VS G + ++G SGAGK+TL+ ++ R T G + ++ + +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77
Query: 928 -ETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984
+ G Q N + S T++E++ F L L+ V K V EL+EL
Sbjct: 78 LRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA-GVPKAEIK---QRVAELLEL- 128
Query: 985 PLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 1038
VGL + LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 1039 RTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1075
+ G T+V H+ +++ + D + ++ +G
Sbjct: 183 LLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-11
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 884 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQ-ETFARISGYC 937
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 938 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997
Q P +++ +L + R++ + V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 8e-11
Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNITISGYP--KKQ 927
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 928 ETFARI----SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 983
+ R G+ QN P T+ E+++ + V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 984 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1039 RTVRNTVDTGRTVVCTIHQPS 1059
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 9e-11
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 932 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R G Q+ P T+YE++ LR+ + E R+ V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRR----RVSEVLDLVGLKHKA 131
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1051 VVCTIH 1056
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 9e-11
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSL 990
G Q+ P +T+ +++ + + R M EV E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 991 VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 863 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 922
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 923 YP---KKQETFARIS----GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 975
P ++ A + G+ Q+ P +T E++ LR DS
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG----- 126
Query: 976 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 1031
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 127 -AKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISG-----YPKKQ 927
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
R G Q+ + P +++ ++LLF+ L + R+ + +E L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 65/248 (26%), Positives = 103/248 (41%), Gaps = 49/248 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK V+ + PG + LLG +GK+TL+ L+G +PT GT+T N + ++ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID- 282
A I Q + I E+TV E L + R LT +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
M+ A L +GL V D V + +S K+ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ MDE ++ L + F I+N LR GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 932
LL VS PG L+G +GAGK+TL+ +LAG +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 933 ISGYCEQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
+ GY Q P T+ + ++ F L E++ + + L EL L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 991 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1032 RA 1033
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 889 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS---GYCEQN---DI 942
A++G +GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 943 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002
SP T+ + + F ++ +D ET + + ++ L LR + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1061
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1062 IFEAFDELFLMKRGG-------QEIYVGP 1083
+ E D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 39/223 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISG----Y 923
D L G++ G + AL+G +GAGK+TL G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 924 PKKQETFARIS-GYCEQN---DIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVM 978
KK R + G QN + +P T+ E + F L L + + E R V
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-LNLGLSKEEVEKR------VK 119
Query: 979 ELVELNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
E ++ VG+ G LS Q+KR+ IA L P II +DEPTSGLD
Sbjct: 120 EALKA-------VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 1034 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1075
A+ +M+ + + G T++ + H +D+ + D++++M G
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 890 LMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETFARISGYCEQNDIHSP 945
L+G SG GKTT + ++AG T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 946 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005
+T+Y+++ F LR P+ + + R + EV EL+++ L LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 1006 RLTIAVELVANPSIIFMDEPTSGLDAR 1032
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 2e-10
Identities = 57/270 (21%), Positives = 101/270 (37%), Gaps = 51/270 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T+L D+S I+ G L L+G GKTTLL A+AG + ++G + D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R A + Q+ + V + +AF R A++ A I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A + D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE + LD++ + + ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 219 AHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 54/219 (24%), Positives = 83/219 (37%), Gaps = 55/219 (25%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
+ + L+ILK V V+K G ++GP SGK+TLL LAG DP+ SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 218 D---MDE----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+DE + R ++ Q + I +T E +A +G + A+
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG--AKAL 130
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI---RGISGG 327
L+ +GL G + +SGG
Sbjct: 131 --------------------------------LEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
+++RV G LF DE + LD +T +I + L
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L ++ G L ++G SG GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994
G QN+ P+ + +++ F L+L+ V+ R ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1050
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1051 VVCTIHQPSIDIFEAF---DELFLMKRG 1075
V+ H DI EA EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 41/227 (18%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISG---YPKKQ 927
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 928 ETFARISG----YCEQNDIHS--PFVTI----YESLLFSAWLRLSPEVDSETRKMFIDEV 977
+ +I G Q+ + S P +TI E L ++K +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 978 MELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+EL+E LVG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLE-------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1030 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
D A ++ ++ + G ++ H + + E D + +M G
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 72/279 (25%), Positives = 109/279 (39%), Gaps = 74/279 (26%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215
++ +T LKDVS + G + ++G +GK+TL+ + G PT SG+V +
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVD 65
Query: 216 GHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
G D+ +R I QH N + TV E +A E+A
Sbjct: 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP-------------LEIAGV 112
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
KA E V L+++GL D D +SGGQK
Sbjct: 113 PKAE-------------------IEERV--LELLELVGL---EDK--ADAYPAQLSGGQK 146
Query: 330 KRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
+RV + ALA L DE ++ LD TT I+ LR IN + +L
Sbjct: 147 QRVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGLTIVLI- 197
Query: 385 APETY------DLFDDIILLSDGQIVYQGPRELVLEFFA 417
T+ + D + ++ G++V +G V E FA
Sbjct: 198 ---THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L + G A++G SG+GK+TL+ +LAG G+IT++G I+
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--------IA 403
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQS 989
EQ + V LFS LR +P+ E + ++ V L L +S
Sbjct: 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE----LWAALQQVGLEKLLES 459
Query: 990 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518
Query: 1043 NTVDTGRTVVCTIH 1056
+ G+T++ H
Sbjct: 519 EHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 862 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 921
M++ V E L +SG R G + L+G +GAGK+TL+ +AG +G +G+I +
Sbjct: 4 MQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 922 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 978
G P + AR Y Q +P W L+ +TR +++V
Sbjct: 59 GQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVA 110
Query: 979 ELVEL-NPLRQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 1032
+ L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + R + G +V + H + + A +L+KRG
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 931
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 932 RISG---YCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVM------- 978
++ +Q DI T+ ++L + W P+ V + D +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 979 -ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
EL E G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 607 AELAE------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 1038 MRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELFLMKRG 1075
+R R C I H+ S I + DE+ +++RG
Sbjct: 655 DDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 60/296 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---- 222
L D+S I G T L+G SGK+T+ + G L P + +T +G +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ ++ DN TV + +AF + V R EM+ I D D
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK----------IVRDVLAD 130
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGP 341
V M DY D +SGGQK+RV G + V P
Sbjct: 131 VGM-------------LDYI---------------DSEPANLSGGQKQRVAIAGILAVEP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ + +DE ++ LD + QI+ +R+ + + VIS+ E ++ D +++L DG
Sbjct: 163 KI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLDDG 219
Query: 402 QIVYQG-PRELV--LEFFASMGFRCP---------KRKGVADFLQEVTSRKDQRQY 445
+++ QG P E+ +E +G P K KG++ QE+ + + QY
Sbjct: 220 KLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 3e-10
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 929
L GVS G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 930 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 985
R Y + P +T+ E+LL L D E ++ ++EV EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRLKE 128
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1046 DTGRTVVCTIHQ 1057
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-10
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-- 926
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 927 -QETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984
+ R G QN + S +I+E++ A L+ DE E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGA--PLTL-----------DEAWEAARMA 565
Query: 985 PLRQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1036 IVM 1038
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 929
+V + VS + + G + AL+G +GAGK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 930 FARISGYCEQND--------IHSPFV-----TIYESLLFSAWLRLSPEVD-SETRKMFID 975
RI D +H F+ T+ E+++ +D + R I
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 976 EVMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
E+ E + ++P + V+ LS +++R+ I L ++ +DEPT+ L +
Sbjct: 123 ELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 1034 AAIVMRTVRNTVDTGRTVV 1052
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 821 QSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 880
+ + P ++L + FDE E+ LN +S
Sbjct: 3 DYFMKKKLKVPNPLSDDIILRVKNLYCVFDE-----KQENELVA----------LNNISY 47
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARISGYCEQ 939
F + ++G SG+GK+TL+ G Y G I + Y ++ +
Sbjct: 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKKNNHELITNPYS 105
Query: 940 NDIHS--------PFV-----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 980
I + V TI + ++F + +++ F M L
Sbjct: 106 KKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGL 165
Query: 981 ----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
+E +P GLS Q++R+ IA L P I+ DEPT+GLD +
Sbjct: 166 DDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+M+ + + +TV H + E DE+ +M +G
Sbjct: 215 MMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 890 LMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 946
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 947 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006
+T+ E++ F +R +V K + E + LV+L LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 1065
+ +A LV P I+ +DEP S LD + + ++ + G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 1066 F---DELFLMKRG-------GQEIYVGPLGRHSCHLI---SYFEAI 1098
D + +M++G +EIY P I + FEA
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEAT 210
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-10
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-----ISGYPK 925
+ VS PG + ++G SG+GK+TL L G + G +G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 926 KQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 981
++ + Q+ + S P +TI + A LRL + + E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTI-GDQIREA-LRLHGKGSRAEARKRAVELLEQV 140
Query: 982 EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
L +P R+ P LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 1041 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+++ + G V+ H + + E D + +M +G
Sbjct: 197 LKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 931
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 932 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR 987
Y Q P++ TI E++LF D E ++V++ L P L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 988 ------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 1040
+ +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 1041 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L +S VI+PG L+G SGK+TL+ + +P SG + +GHD+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A +SQ D + T+ +A+ Q A E+A
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQAD---------RAEIERAL----------- 443
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A D+ V L + DT +G+ + +SGGQ++R+ ++ A
Sbjct: 444 --------AAAY-AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI 490
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ + + L + + T VI S ++ A D I+++ D
Sbjct: 491 LILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVMDD 542
Query: 401 GQIVYQGPRELVLE---FFA---SMGFR 422
G+IV +G +L +A +M FR
Sbjct: 543 GRIVERGTHNELLARNGLYAQLHNMQFR 570
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPK--------K 926
VS PG + ++G SG+GKTTL+ ++GR T G +T G P+ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAE 82
Query: 927 QETFARIS-GYCEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 979
+ R G+ QN S I E L+ + R + +E + +E
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEAQDW-----LE 136
Query: 980 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 137 EVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 1040 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
+R V + G VV H ++ A D L +MK+G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 931
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 932 RIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
R Y Q P +T+ E+LL R I + E+ EL P+ +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLK 122
Query: 989 SLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
++G G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 1048 GRTVVCTIHQPSIDI-FEAFDELFLMKRGG 1076
G + + Q +D E D ++M+RG
Sbjct: 181 GGMAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-10
Identities = 77/323 (23%), Positives = 119/323 (36%), Gaps = 67/323 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
++ ++ I G LLGP GKTT+L +AG P SG + +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R + Q MTV E +AF R Q E+ R A
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA----------- 128
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
L+++ L+ A +SGGQ++RV +V
Sbjct: 129 ------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKPKV 165
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE + LD Q+ N L+ + G + + E + D I+++ DG+I
Sbjct: 166 LLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFLQE-------VTSRKDQRQYWAHKEKPYRFV 456
G PRE+ + PK VA F+ E V R D+++ A+ E +
Sbjct: 225 QDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGRECNI 275
Query: 457 TVQEFAEAFQSFHVGQKISDELR 479
V + GQK+ LR
Sbjct: 276 YVN------FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 29/201 (14%)
Query: 877 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETF 930
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 931 A--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR- 987
A R G Q P ++++++++ A L+L+ D D +ME+ E LR
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDR-------DHLMEVAE-RSLRG 131
Query: 988 -------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--M 1038
+ + P +GLS Q++RL IA L P I+ MDEPTS LD + A + +
Sbjct: 132 AALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 1039 RTVRNTVDTGRTVVCTIHQPS 1059
T V T V +HQ +
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 5e-10
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L D+S I+ G + +LGP +GK+TLL LAG L P+ SG + +G D+ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-10
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 927
D L +G+S G + G +G+GKTTL+ +LAG G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
++ AR Y +++ E+L F + E ++E + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEEALARVGLNGFE 119
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 1048 GRTVVCTIHQP 1058
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 47/250 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH-----DMD 220
IL D+S + PG ++GP +GKTTLL L G+ P+ SG VT G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 221 EFVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ ++ +S H+ TVR+ + S +G E LT A +
Sbjct: 102 FEL-RKRIGLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLTA-EDLAAAQWL--- 155
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
L++LG AD G +S G+++RV +
Sbjct: 156 ------------------------LELLGAKHLADRPFGS-----LSQGEQRRVLIARAL 186
Query: 339 VG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
V P L L +DE + GLD Q++N L + A++ + A E F +L
Sbjct: 187 VKDPEL-LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLL 245
Query: 398 LSDGQIVYQG 407
L +G++V QG
Sbjct: 246 LKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 42/225 (18%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 927
D +L+ ++ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 928 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMEL 980
R G V + E++LFS +R +P E V+
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIRDNIALCNPGAPFE-------HVIHA 566
Query: 981 VELNPLRQSLVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+L + LP G LS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ A++MR +R + GRTV+ H+ + A D + ++++G
Sbjct: 626 YESEALIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----- 221
+LK ++ + G + LLG +GK+TLLL L G L P SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q D+ + V + +AF G+ E+ RR + A
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L +G + +SGG+KKRV +
Sbjct: 112 ----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
L +DE + GLD + Q++ LR + T VIS
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILR-RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-10
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 50/224 (22%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G + FA +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPE------------------VDSETRKMFIDE 976
+ + IY+ L L PE V+ R++ E
Sbjct: 75 -----AALAAGVAIIYQEL------HLVPEMTVAENLYLGQLPHKGGIVN---RRLLNYE 120
Query: 977 VMEL-----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
E V+++P + LS QR+ + IA L N +I DEPTS L A
Sbjct: 121 AREQLEHLGVDIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
R + R +R GR ++ H+ +IF D + + K G
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET 929
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 930 FARISGYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
FAR Y Q + +T+ E + W + R+ ++E + LV L PL
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLA 141
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 1046
LV LS +R+R IA+ + + + +DEPTS LD V+ V R + +
Sbjct: 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
G TV+ +H I++ + + + RGG+ I G
Sbjct: 197 RGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 863 KVQG-VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT---G 916
K + LNG+S G ++G +GAGK+TL++ +AG T G I
Sbjct: 9 KTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV 68
Query: 917 NITISGYPKKQETFARI-----SGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVD 966
++T K+ AR+ +G P +TI E+L A R LS ++
Sbjct: 69 DVTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALN 120
Query: 967 SETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
R F + + L L +GL LS QR+ L++ + + P I+ +DE
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEH 175
Query: 1026 TSGLDARAAAIVM 1038
T+ LD + A VM
Sbjct: 176 TAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 9e-10
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 18/210 (8%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQET 929
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 930 FARISGYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
R++ + + F + E R +++ ++ ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVA--- 130
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 131 -QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1048 GRTVVCTIHQPSIDIFEAF-DELFLMKRGG 1076
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 63/255 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DE-- 221
+ V+ ++ G + LGP +GKTT + L L PT SGT G+D+ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
VPQ + ++T RE L R G L + E+A +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAEEL-- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L++ L D + SGG ++R+
Sbjct: 109 -------------------------LELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
++ LF+DE +TGLD T I + +R G ++ E L D I +
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA--LKEEGVTILLTTHYMEEADKLCDRIAI 196
Query: 398 LSDGQIVYQG-PREL 411
+ G+I+ +G P EL
Sbjct: 197 IDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+DVS I G L ++LGP GKTTLL +AG + P G++ NG ++ P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG--PGA 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + + V + +AF + +G+ RRE A
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA-------------- 113
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALAL 345
L ++GL + I +SGG ++RV + V P L L
Sbjct: 114 -------------HQMLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403
+DE LD+ T Q+ L ++ +G V+ + E L +++LS G++
Sbjct: 155 LLDEPFGALDALTREQMQELL-LDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213
Query: 404 V 404
V
Sbjct: 214 V 214
|
Length = 259 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216
K+R + ++D+S I G + LG +GK+T L L G L PT SG V NG
Sbjct: 29 FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNG 85
Query: 217 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
D P R + + M + L + E+L +
Sbjct: 86 KD-----PFRRREEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKLIYE-------I 128
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
PD D + + + D+ ++L L + + + R +S GQ+ R
Sbjct: 129 PD---DEFAERL-----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELAA 169
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI- 395
++ P LF+DE + GLD + I L++ N LL T +FDDI
Sbjct: 170 ALLHPPKVLFLDEPTVGLDVNAQANIREFLKE---YNEERQATVLL-----TTHIFDDIA 221
Query: 396 ------ILLSDGQIVYQGPRELVLEFFASM 419
+L+ GQ+V+ G + E F
Sbjct: 222 TLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 69/290 (23%), Positives = 105/290 (36%), Gaps = 66/290 (22%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MD 220
+ + DV+ I+ G +L+GP SGKTT L + ++PT SG + +G D +D
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLD 69
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R Y+ Q +TV E +A + G
Sbjct: 70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK---------------------- 107
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ D L ++GLD D +SGGQ++RV V
Sbjct: 108 ------------ERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVG-----VA 147
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
ALA L MDE LD T Q+ ++ + G ++ + E L D I
Sbjct: 148 RALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLADRI 206
Query: 396 ILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQ 444
++ G+IV P E++ P V DF E S + R
Sbjct: 207 AVMDAGEIVQYDTPDEIL---------ANPANDFVEDFFGE--SERGLRL 245
|
Length = 309 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 928
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 929 TFA---RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
T A R G Q D+ T+ E++ + P E EV E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATRE-------EVEEAARAAN 116
Query: 986 LRQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
V + + RT H+ S I A D + +++ G
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 77/287 (26%)
Query: 155 LRI-IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGT 211
L + P+ + + VS +K G + ++G SGK+ L A+ G L V G
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 212 VTYNGHDMDEFVPQRTA-------AYISQHD-----NHIGEMTVRETLAFSARCQGVGTR 259
+ ++G D+ + A I Q D N + MT+ + +A R G G
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQ-DPMTSLNPV--MTIGDQIAEVLRLHGKGLS 123
Query: 260 YEMLTELARRE-KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318
+ E A + GI PDP+ + Y
Sbjct: 124 KKEAKERAIELLELVGI-PDPE---------------RRLKSY---------------PH 152
Query: 319 EMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHIN 373
E+ SGG ++RV M+ ALA L DE +T LD + QI++ L++ +
Sbjct: 153 EL----SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQRE 202
Query: 374 SGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
GTA+I + T+DL D + ++ G+IV +GP E + +
Sbjct: 203 KGTALILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 46/246 (18%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
HL + D++ + G + +LGP +GK+TLL +AG P SG + NG D
Sbjct: 13 HLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASP 67
Query: 224 P-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P +R + + Q +N +TV + + G+ P
Sbjct: 68 PAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+K A + ++ +GL + +SGGQ++RV +V
Sbjct: 100 --LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQ 148
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + +++ + Q + ++ + + + D ++ L +G+
Sbjct: 149 PILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207
Query: 403 IVYQGP 408
I QG
Sbjct: 208 IAAQGS 213
|
Length = 231 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-09
Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 52/261 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---V 223
IL D+S IK T ++G SGK+TL L G SG + NG + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
++ Y+ Q + +I ++ E L A+ + + A IK D I+
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGAK---ENVSQDEIWAACE---IAEIKDD--IEN 596
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
TE E ISGGQK+R+ ++ +
Sbjct: 597 MPLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSK 631
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISLLQPAPETYDLFDDIILLSDG 401
L +DE ++ LD+ T +IVN L +++ T V L A ++ D II+L G
Sbjct: 632 VLILDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHG 684
Query: 402 QIVYQGP-RELVLE--FFASM 419
+I+ QG EL+ F+AS+
Sbjct: 685 KIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 34/159 (21%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI----------TGNITISGYPKKQETFA 931
G+ TAL G SG+GKT+L++++AG R G I I + P ++
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL---PPEKR--- 76
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
RI GY Q+ P T+ +L + W ++ + D+++ L+ + L L
Sbjct: 77 RI-GYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LD 123
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 124 RYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 46/186 (24%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 924
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 925 KKQETFA---RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 980
KK + R+ G Q +PF ++IY+++ + RL D K +DE++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG--PRLHGIKD----KKELDEIVE- 122
Query: 981 VELNPLRQSL--VGLPG-VS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+SL L V GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 1030 DARAAA 1035
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 47/216 (21%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 933
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 934 SGYCEQNDIHSPFVTIYESL---LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
DI + E +F A+ PE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1051 VVCTIHQPSIDIFEAFDELFLM------KRGGQEIY 1080
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 64/248 (25%), Positives = 102/248 (41%), Gaps = 45/248 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MDEF 222
+LKD+S I+PG ++GP SGK+TL+ L DPT SG + +G D +
Sbjct: 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLD 399
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ +SQ D + T+RE +A G E+ K A
Sbjct: 400 SLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF---- 447
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ L DT+VG E +SGGQ++R+ ++
Sbjct: 448 ----------------------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNP 484
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD+ T I + L+ + T +I+ T D II+L +G+
Sbjct: 485 PILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHR---LSTIKNADRIIVLDNGR 540
Query: 403 IVYQGPRE 410
IV +G E
Sbjct: 541 IVERGTHE 548
|
Length = 567 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 14/211 (6%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFA 931
+L +S PG A++G +GAGKTTL+ +L G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 932 RISGYC--EQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
+ G E ++ T+ + +L F A + + E + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 1045
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 876 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG 935
VS PG + ++G SG+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 936 YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI------------DEVMELVEL 983
+ + + + ++++ +R+S + R M I + +E VE+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 984 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+P R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 138 DPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 1044 TV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
V D G V+ H + A L +M++G
Sbjct: 194 LVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 938
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 939 QNDIHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 992
+N++ +T+ ++ L S L+L+ E ++ ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1049
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRG 1075
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 65/261 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEFV 223
+LKD++ IKPG ++GP +GKTTL+ L DP G + +G D+
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ + Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 284 YMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMV 339
++A G ++ L G DT++G+ G +S G+++ + M+
Sbjct: 109 VIEAAKEAG------AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLLAIARAML 155
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
L +DE ++ +D+ T I L + + G I S ++ A D
Sbjct: 156 RDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTIKNA-------D 205
Query: 394 DIILLSDGQIVYQGPRELVLE 414
I++L DG+I+ +G + +L
Sbjct: 206 KILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 4e-09
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 49/240 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEFVPQ 225
L +VS + GR+ LGP +GK+T + + G L P SG+V G D+ + Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY- 284
R Y+ +H+ +M VRE L F A +Y
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIA------------------------------GIYG 104
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
MK + + +I +++GL +G +S G ++RV + ++
Sbjct: 105 MKGQLLKQRVEEMI-----ELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKV 154
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE +TGLD + +I N ++ I +I E + D +I+++ G+IV
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 5e-09
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQET--FARISGYC 937
+ G TAL+G +G+GK+TL+ L G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 938 EQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVGLP 994
Q P ++E + + P+ + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKD-VAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP 142
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 --FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 1055 IHQPSIDIFEAFDELFLMKRG 1075
H D+ + D ++L+++G
Sbjct: 201 THLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-09
Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ--- 927
L ++ G AL+G SGAGKT+L++ L G ++ G++ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-L 986
E++ + + QN P T+ +++L P+ E + + +E ++ L
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFL 468
Query: 987 RQSLVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
GL +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ +
Sbjct: 469 PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528
Query: 1042 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
N +T + HQ ++ +D++++M+ G
Sbjct: 529 -NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 5e-09
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQE 928
L G+ F +TAL+G SG GK+T + L G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 929 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
+ G Q PF +IYE++++ LRL+ D K +DE +E L
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKD----KAVLDEAVE----TSL 129
Query: 987 RQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+Q+ + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-09
Identities = 65/257 (25%), Positives = 95/257 (36%), Gaps = 56/257 (21%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG P SG++ +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TV E +AF + + V E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L+++ L D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASM 419
Q+ L+ I G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFRCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 48/216 (22%), Positives = 72/216 (33%), Gaps = 49/216 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V 223
T+ D+S + G + GP +GKTTLL LAG L P +G V + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ Y+ E+T E L F R G G + E + AG+
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWEALAQVGLAGL-------- 123
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
D + +S GQ++RV + + PA
Sbjct: 124 ---------------------------------EDLPVGQLSAGQQRRVALARLWLSPAP 150
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE T LD + + H G V+
Sbjct: 151 LWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL 184
|
Length = 209 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 7e-09
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ET 929
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 930 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
R GY Q D + T+ +++ A P D E I EL + +
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRR 586
Query: 990 -------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+G G LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++
Sbjct: 587 HPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 1043 NTVDTGRTVVCTIHQPSI 1060
+ G+T+V H+ S+
Sbjct: 646 RWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-09
Identities = 49/218 (22%), Positives = 77/218 (35%), Gaps = 55/218 (25%)
Query: 826 AEAEASRPKKKGMVLPFEPHS-----LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 880
E K P L F+ V D +LL +S
Sbjct: 296 EERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD------------GGRLLLKDLSF 343
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQN 940
G A++G +GAGK+TL+ +LAG G ++G + + G K GY +Q+
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-------IGYFDQH 393
Query: 941 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL--VGLPG--- 995
+T + E + +R L G G
Sbjct: 394 --------------RDELD------PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ 433
Query: 996 ---VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 26/207 (12%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 928
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 929 TF-------ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----ID 975
AR + Q P V+ E L + R S + E + +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE-EPLDLLDFLKLLK 124
Query: 976 EVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
+ L+ ++ L +S+ G S ++KR I + P + +DE SGLD A
Sbjct: 125 AKLALLGMDEEFLNRSV-----NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 1034 AAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
IV + + R+ + H +
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 50/217 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F 222
+ + +S + G + GP GKTTLL LAG L P SG V +NG + E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRD 69
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P R Y+ E++ E L F A G G + + LA
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA-------------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+GL D +S GQ++R+ + + A
Sbjct: 115 -----------------------VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE +T LD + + LR H+ G V+
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-08
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
LK+ + + G +LG SGK+TLL LAG DP G++T NG ++ Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
T + ++Q H+ T+R+ L + PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDAS-D 441
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ A + ++ +T +G E R +SGG+++R+ ++ A
Sbjct: 442 EELWAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIIL 397
+DE + GLD T Q++ L + H T ++ T+ L D II+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIV 544
Query: 398 LSDGQIVYQGPRELVLE 414
L +G+I+ +G +L
Sbjct: 545 LDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQET 929
+LNG+S G A++G SGAGK+T++ +L +G+ITI G Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 930 FARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984
R G Q ND TI ++ + + EV + I + ++ L
Sbjct: 335 LRRAIGIVPQDTVLFND------TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLP 386
Query: 985 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R
Sbjct: 387 EGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE- 444
Query: 1045 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 1087
V GRT + H+ S I +A DE+ ++ G + G H
Sbjct: 445 VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 50/234 (21%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
G + ++GP +GK+TLL +AG ++P SG++ N P QR + + Q +N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TVR+ + G+ P +K A + ++
Sbjct: 81 LFAHLTVRQNIGL------------------------GLHPG------LKLNAEQQEKVV 110
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVTTGEMMVGPALALFMDEISTG 353
D + D + R +SGGQ++RV +V P L +DE +
Sbjct: 111 ------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158
Query: 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD +++ ++Q T ++ + + + I ++S G+I
Sbjct: 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ +L+D++ ++ G +LGP GK+TLL +AG PT SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y+ Q D + +TV + +A +G RE+A
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA-------EARERA------------ 111
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
L+++GL D +SGG ++RV A+A
Sbjct: 112 ---------------KELLELVGLAGFEDKYPHQ-----LSGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 867 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNITI 920
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 921 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFID 975
+G P AR+ Q + + E +L + R + + ++
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AW 127
Query: 976 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPT 1026
+ + L L V+ LS + R+ A L P + +DEPT
Sbjct: 128 QALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 1027 SGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 1060
+ LD ++ TVR V I H P++
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 76/288 (26%), Positives = 115/288 (39%), Gaps = 58/288 (20%)
Query: 154 YLRIIPSKKR--HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGT 211
YL I +KR T LKD+S +K G LLGP GKTTLL +AG T +GT
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGT 60
Query: 212 VTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ G D+ PQ R + Q +TV + +A+ + +G+G E
Sbjct: 61 IYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-------EVAE 113
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A L ++GL + +SGGQ++
Sbjct: 114 RVA---------------------------ELLDLVGL-----PGSERKYPGQLSGGQQQ 141
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
RV + P L L +DE + LD+ + +RQ + G I + E
Sbjct: 142 RVALARALATSPGL-LLLDEPLSALDARVREHLRTEIRQ-LQRRLGVTTIMVTHDQEEAL 199
Query: 390 DLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
+ D I++++ G I G P+E+ +R P VADF+ EV
Sbjct: 200 SMADRIVVMNHGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 863 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 922
KV G K+ L VS + G + ++G SGAGK+TL+ + G + +G++ + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 923 Y------PKKQETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 974
K+ R G Q N + S T++E++ + P+ + E R +
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALPLEIAGVPKAEIEER---V 121
Query: 975 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
E++ELV L + P + LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADAY---P--AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 1035 AIVMRTVRNT-VDTGRTVVCTIHQ 1057
++ +R+ + G T+V H+
Sbjct: 177 QSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 927
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 928 ETFARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELV----- 981
IS Y E +HS + E +LF+ L+ + ++ + V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 982 -----ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1037 VMRTVRNTVDTGRTVVCTIHQ 1057
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 935 ---GYCEQNDIHSPFV-TIYESLLFSAW-LRLSP-EVDSETRKMFIDEVMELVELNPLRQ 988
G Q+ F T+++ + F + L EV+ E ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVE-----EALKAVRMWDFRD 133
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1049 RTVVCTIH 1056
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 73/286 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMD 220
+LK +S ++ G + +++GP SGK+TLL L G +P SG++T +G D
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKK 70
Query: 221 EFVPQRT-AAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + R + Q N +TV E TLA ++ + KA +
Sbjct: 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLA--------------PVKVKKLSKAEARE- 115
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE- 336
KA+ L+ +GL AD D +SGGQ++RV
Sbjct: 116 --------KALE------------LLEKVGL---ADKA--DAYPAQLSGGQQQRVAIARA 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-F--- 392
+ + P + LF DE ++ LD ++++ ++ G +I + T+++ F
Sbjct: 151 LAMDPKVMLF-DEPTSALDPELVGEVLDVMKDL--AEEGMTMIIV------THEMGFARE 201
Query: 393 --DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
D +I + G+I+ +GP E EFF + PK + FL ++
Sbjct: 202 VADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 927
+L G+ + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPL 986
+ G Q P +T+ E++ + ++ + ++E R +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER------ALELLEK--- 122
Query: 987 RQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ +
Sbjct: 123 ----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 1042 RNTVDTGRTVVCTIHQ 1057
++ + G T+V H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 58/256 (22%), Positives = 94/256 (36%), Gaps = 67/256 (26%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ ++S + PG + LLGP +GKTT + G L+PT G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
R Y+ + +MTV + L + A +G M
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKG-----------------------------M 102
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS----GGQKKRVTTGEMMVGP 341
E +L+ L + + + I G Q+K ++ P
Sbjct: 103 PK-----AEIQKKLQAWLERLE--------IVGKKTKKIKELSKGNQQKIQFISAVIHEP 149
Query: 342 ALALFMDEISTGLDSSTTFQIVNC--LRQNI--HINSGTAVI---SLLQPAPETYDLFDD 394
L L +DE +GLD VN L+ I G +I ++ E L D
Sbjct: 150 EL-LILDEPFSGLDP------VNVELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDR 199
Query: 395 IILLSDGQIVYQGPRE 410
+++L GQ V G E
Sbjct: 200 LLMLKKGQTVLYGTVE 215
|
Length = 300 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
IL ++S IKPG + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q +N + ++R+ +A + DP + +
Sbjct: 74 LRRQVGVVLQ-ENVLFNRSIRDNIALA---------------------------DPGMSM 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
EA + + + L DT+VG++ G+SGGQ++R+ ++
Sbjct: 106 E------RVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPR 158
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L DE ++ LD + I+ +N+H I +G VI ++ T D II++ G+
Sbjct: 159 ILIFDEATSALDYESEHAIM----RNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGR 213
Query: 403 IVYQGPRELVL 413
IV QG + +L
Sbjct: 214 IVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L G+S + G + ++G SG+GK+TL+ L G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV----MELVELNPLRQ 988
G Q P +T+ E++ L+P +K+ E +EL+E
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVT------LAPVK---VKKLSKAEAREKALELLEK----- 123
Query: 989 SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 124 --VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 1044 TVDTGRTVVCTIHQ 1057
+ G T++ H+
Sbjct: 182 LAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 44/186 (23%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 933
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 934 SG--YCEQNDIHS--------------------PFVTIYESLLFSAWLRLSPEVDSETRK 971
SG Y + DI P ++I+E++ L+L+ V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 972 MF--IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ + +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1030 DARAAA 1035
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNITISGYPKKQETF 930
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLH---- 74
Query: 931 ARISGYCEQNDIHSPFVTI-YESLLFSAWLR--LSPE---VDSETRKMFIDEVMELVELN 984
D+ S I + +LFS +R L P D E + + +E V L
Sbjct: 75 ----------DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGLK 119
Query: 985 PLRQSLV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+SL GL V LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 1039 RTVRNTVDTGRTVVCTIH 1056
+T+R TV+ H
Sbjct: 180 KTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 57/247 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V 223
+L D+S +K G + LGP +GKTT + + G + P SG +T++G +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R A I + +T RE L AR G+ ID
Sbjct: 71 LRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PA 342
L V+GL + ++G S G K+R+ ++G P
Sbjct: 110 ------------------VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLGNPD 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDIILLSD 400
L L +DE + GLD ++ + ++ T +IS LL E + D I +++
Sbjct: 147 L-LILDEPTNGLDPDGIKELRELIL-SLRDQGITVLISSHLLS---EIQKVADRIGIINK 201
Query: 401 GQIVYQG 407
G+++ +G
Sbjct: 202 GKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 65/259 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
++ +S ++ G LLGP +GKTT L L G P +G+++ G E VP
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPS 73
Query: 226 RT------AAYISQHDNHIGEMTVRETLAFSARCQGVGT-----RYEMLTELARREKAAG 274
R + Q DN + TVRE L R G+ L E A+ E A
Sbjct: 74 RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA- 132
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
D + +SGG K+R+T
Sbjct: 133 -------------------------------------------DAKVGELSGGMKRRLTL 149
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE +TGLD + LR + G ++ E L D
Sbjct: 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS--LLARGKTILLTTHFMEEAERLCDR 207
Query: 395 IILLSDGQIVYQG-PRELV 412
+ ++ +G+ + +G P L+
Sbjct: 208 LCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L DVS I+ G L GP +GKTTLL L G L P+ G V G D++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + D + + TV E +A +G R E+ RR AA
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
L+ +GL+ AD +SGG+++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
P L L DE + LD + +I++ L++ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 37/167 (22%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETFARIS-G 935
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 936 YCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR------- 987
Q +PF ++IYE++ + LR D K +DEV+E LR
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKD----KKVLDEVVE----RSLRGAALWDE 134
Query: 988 -QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
+ + GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 135 VKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 35/243 (14%)
Query: 846 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
++ FD V Y P E + ++ V+ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 904 VLAG--RKTGGYIT-GNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLFSAW 958
+ + T G +T +ITI+ K + + G Q ES LF
Sbjct: 52 NINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---------FPESQLFEDT 102
Query: 959 LRLSPEVDSETRKMFIDEVME-----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1013
+ + KM +DEV L++L R + P +S Q +++ I L
Sbjct: 103 VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSIL 160
Query: 1014 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +M
Sbjct: 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219
Query: 1073 KRG 1075
K G
Sbjct: 220 KEG 222
|
Length = 286 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-08
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NITISGYPKK 926
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
+E + G Q P +TI ++ L + RK ++ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 987 RQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1042 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 37/174 (21%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGNITISG---YPKKQETF 930
V+ P +TA +G SG GK+T++ L R G + G + + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 931 A--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
A R G Q P ++I ++++ A L+L+ K +DE++E +
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLN----GVRNKKDLDELVE--------K 127
Query: 989 SLVG------------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
SL G PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 128 SLRGANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Query: 858 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 915
M E+K G L +LN +S + R G A+ G SG GK+TL+ ++A T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 916 --GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF 973
G +S K E + + YC Q T+ ++L+F +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAA 113
Query: 974 IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
+D L+ L S++ ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD----LLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1034 A----AIVMRTVRNTVDTGRTVVCTIHQP 1058
++ R VR + V+ H
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 7e-08
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--- 220
T+L DVS I+ G + LLGP SGK+TLL +AG +P SG++ +G D+
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLE 68
Query: 221 -EFVPQRTA-AYISQHDNHIGEMTVRETLAF 249
E P R + Q +TV E +A
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 47/240 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+D++ ++ G L ++LGP GKTTLL +AG + G++T +G ++ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + V++ +AF + GV R E A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIA-------------- 109
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
+ LK +GL+ I +SGGQ++RV + L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQIV 404
+DE LD+ T Q+ L + +G V+ + E + +++LLS G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 8e-08
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 933
LL +S G L L G +GAGKTTL+ ++AG G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 934 SGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
C ++ I +P++T+ E+ L+ ++ + I E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1051 VVCTIHQ 1057
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 8e-08
Identities = 63/264 (23%), Positives = 111/264 (42%), Gaps = 45/264 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+ ++++ I G T ++GP GK+TLL L+ + P G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A I +Q+ G++TV+E +A RY R K D +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG--------RYPHQPLFTRWRKE-------DEE 122
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
KA+ G IT + D+ + +SGGQ++R ++
Sbjct: 123 AVTKAMQATG-----ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD S ++ L + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELVL-EFFASM-GFRC 423
IV QG P+E+V E + G RC
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 9e-08
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 71/261 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSG-TVTYNGHDMDEFV 223
LK ++ + G + LLGP +GK+TL L G L PT + + G + Y+ + E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++T + Q+ D+ + TV E +AF G+ E+ +R K A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGP 341
+KA+ EG E ++ +SGGQKKRV G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCL----RQNIHINSGTAVISLLQPAPETYDL------ 391
+ + +DE ++GLD QI+ L ++ I T +IS T+D+
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGI-----TIIIS-------THDVDLVPVY 203
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D + ++SDG+I+ +G P+E+
Sbjct: 204 ADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 71/280 (25%), Positives = 109/280 (38%), Gaps = 70/280 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
+ +++ I G +L+GP SGKTT + + ++PT SG + +G D+ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 225 QRTAAYISQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R Y+ Q IG MTV E +A + + RE+A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWP-------KEKIRERA--------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
D L ++GLD D +SGGQ++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
ALA L MDE LD T Q+ + + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQE 435
++ +G+IV G P E+ R P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFAR 932
L V+ PG + AL+G +GAGK+TLM VL+G G ITI+ Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 933 ISG----YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
G Y E + I +T+ E+L R T+K+ +++ E+
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHL------TKKVCGVNIIDWREMRVRAA 127
Query: 989 SL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 1037
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
M +R G +V H+ + +I D +MK G
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFARISGYCEQN 940
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 941 DIHS-----PFVTIYESLL-----FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
H P +++ +++ WLR D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1051 VVCTIH 1056
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 48/202 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL ++S ++ G L+ GP GK+TLL +A + PT SGT+ + G D+ P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ L+ L DT++ + I +SGG+K+R++ +
Sbjct: 115 ---AIFLDD-----------LERFALP---DTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 343 LALFMDEISTGLDSSTTFQIVN 364
L +DEI++ LD S VN
Sbjct: 157 KVLLLDEITSALDESNK-HNVN 177
|
Length = 225 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPKK 926
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 927 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
R G Q +PF +IYE++ + P + E K +D ++E
Sbjct: 82 VVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE------ 127
Query: 986 LRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
+SL G LS Q++RL IA L NP +I MDEP S LD A
Sbjct: 128 --KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 1035 A 1035
A
Sbjct: 186 A 186
|
Length = 253 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 45/188 (23%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 924
L V +TA +G SG GK+T + D + G + +TG IT+ G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 925 KKQ---ETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETR-KMFIDEVME 979
+ E AR+ G Q +PF +IYE++ + P + R K +DE++E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 980 LVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
LR++ GL PG +GLS Q++RL IA + +P +I MDEP S L
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194
Query: 1030 DARAAAIV 1037
D A A V
Sbjct: 195 DPIATAKV 202
|
Length = 267 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 55/259 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K+ +L +VS I+ G LLG GK+TL L G P GTV++ G D+
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLY 76
Query: 221 EFVP------QRTAAYISQHDNHIG----EMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ +R + Q + MTVR+ + R L E ++
Sbjct: 77 QLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVRQIIGEPLR------HLTSLDESEQKA 128
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A + L ++GL ++ D++ R +SGGQ +
Sbjct: 129 RIAEL---------------------------LDMVGLR--SEDA--DKLPRQLSGGQLQ 157
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
R+ + V P L + +DE + LD I+ LR+ + GTA + +
Sbjct: 158 RINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHDLRLVQ 215
Query: 390 DLFDDIILLSDGQIVYQGP 408
+ ++ GQIV +
Sbjct: 216 SFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP------KKQ 927
+L VS + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 928 ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
F R Q+ + P +T+ + + LR +D +K I E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 924
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 925 KKQET--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 981
K + + G Q +PF +I+E++ + LR++ D+ + ++E ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 982 EL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 1037 V 1037
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------KK 926
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
E + G+ Q P T E++ + + +R + E++ V L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL---EMLAAVGLEHR 138
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 139 ANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 39/227 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 933 ISGYCEQNDI---HSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDE----------VM 978
S +N I H + + S++ + WL P T+ MF+D+
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFD 120
Query: 979 EL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
EL ++++P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 121 ELDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084
+R + G +V H+ +IF+ DE+ ++ R GQ I PL
Sbjct: 174 FTIIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L+G++ RPG AL+G SGAGK+TL +L + +G I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQ------- 406
Query: 935 GYCEQNDIHSPFVTI-YESLLFSAWLR----------LSPEVDSETRKMFIDEVMELVEL 983
+ ++ + + + +LF+A + EV++ R E + L
Sbjct: 407 --LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--AL 462
Query: 984 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + +
Sbjct: 463 PEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-E 520
Query: 1044 TVDTGRTVVCTIHQ 1057
T+ GRT + H+
Sbjct: 521 TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQET 929
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 930 FARISGYCEQ 939
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 320 MIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378
+ +SGGQ++RV ++ P L L +DE ++GLD ++ +++ LR+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 379 ISLLQPAPETYDLFDDIILLSDGQ 402
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 51/205 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
+L +V+ I G + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
QR + Q ++V + L F+ A +K
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------PATLK-------- 107
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
G + L+ GLD +SGGQ+ RV ++ A
Sbjct: 108 -------GNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQN 369
L +DE + LD + LR
Sbjct: 156 LLLDEPFSRLDVA--------LRDQ 172
|
Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 27/193 (13%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L++VS + PG L+G +GK+TLL LAG+L+P SG VT V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+SQ E TV + + +G G E+L EL D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 286 KAIATEGQ---EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ EA L LG D V +SGG ++RV ++
Sbjct: 121 ALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEP 172
Query: 343 LALFMDEISTGLD 355
L +DE + LD
Sbjct: 173 DLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD--------MD 220
+DVS + PG + ++G SGK+TLL LAG+L P GT TY +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
E +R ++ Q+ M V R +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
Y AT D+ +V ++ + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
+V P L +FMDE + GLD S ++++ LR + + G AVI + L +
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRL 219
Query: 396 ILLSDGQIVYQGPRELVLE 414
+++ G++V G + VL+
Sbjct: 220 LVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGN-ITISGYPKKQET 929
L GV+ + G +L+G SG GK+TL+++++G + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 930 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
F QN P++T+ E++ A R+ P++ R+ ++E + LV L ++
Sbjct: 60 F--------QNYSLLPWLTVRENIAL-AVDRVLPDLSKSERRAIVEEHIALVG---LTEA 107
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1048
PG LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 108 ADKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1049 RTVVCTIHQPSIDIFEAFDELFL-----MKRGGQEIYVG 1082
TV+ H D+ EA L L M G +G
Sbjct: 166 VTVLMVTH----DVDEA---LLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 57/192 (29%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L + + VL + GVSG+GK+TL+
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV-------------------------------- 38
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSL 990
+Y S A L S + +FID++ L+++ L Q L
Sbjct: 39 -----------NEGLYASG--KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1049 RTVVCTIHQPSI 1060
TV+ H +
Sbjct: 140 NTVILIEHNLDV 151
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 52/276 (18%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF- 222
+L D+S I G++ LLGP SGKTTLL +AG T SG + ++G D+
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R ++ QH MTV + +AF LT L RRE+ P+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAA 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGP 341
+ L+++ L AD +SGGQK+RV + V P
Sbjct: 112 AIKAKVTQ-----------LLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEP 155
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ L +DE LD+ ++ LRQ +H + + E ++ D ++++S G
Sbjct: 156 QI-LLLDEPFGALDAQVRKELRRWLRQ-LHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213
Query: 402 QIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
I G P ++ +R P + V +F+ EV
Sbjct: 214 NIEQAGTPDQV---------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 58/254 (22%)
Query: 846 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 904 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 963
+G ITI+GY ET G + SL+F P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKV-----SLVFQF-----P 94
Query: 964 EVDSETRKMFIDEVMELVELNPLR----------QSLVGLPGVSGLSTE----------- 1002
E ++F + V++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 1003 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1061
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 1062 IFEAFDELFLMKRG 1075
+ E D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 68/277 (24%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
K L +VS I+ G ++G SGK+TL LAG P+ SG++ +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGK 69
Query: 218 DMDEFVPQRTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREK 271
+ + + Q + + TV L+ R G+ + + EL +
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ-- 127
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
G+ P + ++ G GQ++R
Sbjct: 128 -VGLPPS------------------FLDRRPHELSG-------------------GQRQR 149
Query: 332 VTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQN--------IHINSGTAVISLL 382
+ ++ P L L +DE ++ LD S QI+N L + + I+ A++
Sbjct: 150 IAIARALIPEPKL-LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV--- 205
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
+ D I ++ +GQIV GP E +L +
Sbjct: 206 ------EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 86/298 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK ++ IK G +T +LG +GK+TL L G L P SG + ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPID------- 71
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
Y + G M +RE+ VG ++ DPD ++
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTM---VGDEMIR-GI-----------SGGQKKRV 332
A+V D + L + D + V + + R GI S GQKKRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL- 391
++V L +DE + GLD +I+ L + T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 392 -----FDDIILLSDGQIVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKD 441
D++ ++ +G+++ QG P+E+ E + R P R G L E+ KD
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP-RIG---HLMEILKEKD 257
|
Length = 283 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 44/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L+ +S ++ G ++GP SGK+TL + G PT SG+V +G D+ ++ +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRE 388
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ Y+ Q D + TV E +A R+ G DP+
Sbjct: 389 TFGKHIGYLPQ-DVELFPGTVAENIA----------RF-------------GENADPE-- 422
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
K I EA + + +L L DT++G +SGGQ++R+ + G
Sbjct: 423 ---KII-----EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDP 473
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE ++ LD + N ++ + T V+ +P+ D I++L DG+
Sbjct: 474 KLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVDKILVLQDGR 530
Query: 403 IVYQGPRELVL 413
I G R+ VL
Sbjct: 531 IARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
L VS P +T L+GP SGK+TLL ++ L+P + ++G++ YNGH++ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N M++ E + + R +G+ + + + + K A I +
Sbjct: 81 TVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK 139
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
++ A+ G+SGGQ++RV ++
Sbjct: 140 DRLHDSAL----------------------------------GLSGGQQQRVCIARVLAT 165
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ +DE ++ LD + +I
Sbjct: 166 SPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 44/254 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
+K+V+ ++ G + L+GP GKTT L A+ L P +V+G + +G D+ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N M+V + + + G+ R + L E+A R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD-E 137
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ +K AT G+SGGQ++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE ++ LD ++T +I + + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 31/283 (10%), Positives = 86/283 (30%), Gaps = 30/283 (10%)
Query: 1169 SSWIQFVACLWKQHWSYWR---NPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFN 1225
++ ++ ++ + + LLFG G + +
Sbjct: 26 FLLLRILSRFLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLD 85
Query: 1226 AMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQ 1285
+ + V+ + V + ++ R + + + + + +PY++V
Sbjct: 86 YLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVA 145
Query: 1286 SVVYGAIVYAMI---GFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVST 1342
S++ G ++ + G + + + + L +++ A+ V
Sbjct: 146 SLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGN 205
Query: 1343 LFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQ 1402
L SG P +P W + + NP+ + +
Sbjct: 206 LLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAI-----------------------D 242
Query: 1403 FLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445
L+ + G+ ++L + + LG+ + +R+
Sbjct: 243 ALRYVYLGGWRNDGIWISLL-ILLLFAVVFLLLGLLLLRRRRK 284
|
Length = 286 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 60/188 (31%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 927
L ++ +TAL+G SG GK+T + D++ K I G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 928 ETFARISGYCEQNDIHS-------------PF-VTIYESLLFSAWLRLSPEVDSETRKMF 973
+ Y D++ PF ++IY+++ + P K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY------GPRTHGIKDKKK 118
Query: 974 IDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
+DE++E L+ + + L GLS Q++RL IA L P ++ M
Sbjct: 119 LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1023 DEPTSGLD 1030
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGY----PKKQETFARIS- 934
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL---NPLRQS 989
G Q P ++IY+++ F P + K +D ++E L + + ++
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVEESLKKAALWDEVKSE 139
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
L PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 140 L-NKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 38/222 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNITISGYPKKQET 929
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 930 FARISGYCEQNDIHS-----PFVTIYESLLF-----SAWLRLSPEVDSETRKMFIDEVME 979
A I IH P +TI E++ + + R+ + +KM+ +
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 980 LVELNPLRQS--LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
L LN S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079
R +R GR +V H+ +IFE D++ + R GQ I
Sbjct: 181 FRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + GTV + G D+ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQ--GVGTRYEMLTELARREKAAGIKPDPDIDV 283
A GE +AF + GV ++ + T L G +P D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPA 342
+++ + K+ L + D + + G SGG+KKR +M V P
Sbjct: 121 -----------QDLMEE---KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 343 LALFMDEISTGLD 355
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 4e-07
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 61/212 (28%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLL--LALAGKLDPTLKVSGTVTYNGHD-----M 219
LKD++ I ++T L+GP GK+TLL L L P +V G V +G + +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR-EKAAGIKPD 278
D +R + Q N M++ + +A+ R G+ + + L E+ K A
Sbjct: 82 DVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI--KDKELDEIVESSLKKA----- 133
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVTTG 335
A+ E V D + + G+SGGQ++R+
Sbjct: 134 --------ALWDE------------------------VKDRLHKSALGLSGGQQQRLC-- 159
Query: 336 EMMVGPALA-----LFMDEISTGLDSSTTFQI 362
+ ALA L MDE ++ LD +T +I
Sbjct: 160 ---IARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+ VS + G +T +LG GKTTLL L G L SG++ +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETL 247
A AY+ Q +TV E L
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 23/235 (9%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNITISGYPKKQET 929
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 930 F-ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1045
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGRHSCHLIS 1093
G ++ H + + DE+ +M G +EI+ P + L+S
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 59/252 (23%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDE-FVPQRT 227
D++ +K G + L+G SGK+ LA+ G L P L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
A I Q N T+ A E L L + K A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA--- 344
+ E EA +GL + + + +SGG +R +M+ AL
Sbjct: 102 LILEALEA----------VGLPDPEEVL--KKYPFQLSGGMLQR-----VMIALALLLEP 144
Query: 345 --LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDII 396
L DE +T LD +++ LR+ + GT ++ + T+DL D++
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRE-LRQLFGTGILLI------THDLGVVARIADEVA 197
Query: 397 LLSDGQIVYQGP 408
++ DG+IV +G
Sbjct: 198 VMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 47/221 (21%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L VS + G A++G +G+GK+TL +L G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 933 IS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984
+ G QN P FV T+ + + F E + +E++E V+
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL----------ENIGVPREEMVERVD-Q 123
Query: 985 PLRQSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
LRQ VG+ P LS Q++R+ IA L P II +DE TS LD R V
Sbjct: 124 ALRQ--VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
Query: 1038 MRTVRNTVDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 1075
+ TVR + TV+ H D+ EA D + +M +G
Sbjct: 180 LETVRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 5e-07
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 882 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARIS-GYC 937
F +TA +G +GAGKTT + +L G +G + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 938 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997
Q++I +T+ E +LF A L+ E ++ ++ ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 1054
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 1055 IHQ 1057
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 36/162 (22%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L PT SGT+ +G D ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
F R E L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 308 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 349
L D + SGGQK+RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 44/231 (19%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
G +T ++GP SGK+TLL +AG P SG V NG D+ P R + + Q +N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV + + G+ ++ E R+ + K + E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+SGG+++RV ++V L +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ ++++ L ++H + V+ + + L ++ L +G+I QG
Sbjct: 162 ALRAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 5e-07
Identities = 68/276 (24%), Positives = 109/276 (39%), Gaps = 48/276 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVP 224
L D+ +K G T L+G SGK+TLL L G L PT + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 QRTAAYISQH--DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++A I L+++GL ++ +SGGQ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + GLD +++ L ++IH SG V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFASMGFRCPKRKGVADFLQE 435
I+ G P ++ E F + PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM---DEFV 223
ILKD+S + G + ++GP +GK+TL+ + +DPT G++ +G D+ D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
E NV +YYL ++GL+ T ++ +SGG+ +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ L + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 V 404
V
Sbjct: 211 V 211
|
Length = 241 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 77/285 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
LK+++ I ++T L+GP GK+TLL +L L P +++ G V ++G D+ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
+R + Q N M++ + +A+ R G+ + E L E+ K A + D
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKE-LDEIVEESLKKAAL-WDE 133
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D L L G+SGGQ++R+ +
Sbjct: 134 VKD-------------------RLHDSAL--------------GLSGGQQQRLC-----I 155
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVI---SLLQPAPET 388
ALA L +DE ++ LD T +I + L++ T VI ++ Q A +
Sbjct: 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY-----TIVIVTHNMQQAARIS 210
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
D DG++V GP E + F PK K D++
Sbjct: 211 ----DRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-07
Identities = 62/283 (21%), Positives = 100/283 (35%), Gaps = 93/283 (32%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD----- 218
L L +VS I G ++G SGKTT + L L P +GT+ + D
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKK 75
Query: 219 --------MDEFVPQRTAA----YISQHDNHIG-----------EMTVRETLAFSARCQG 255
+++ V Q+T I + +G E T+ + + F G
Sbjct: 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG 135
Query: 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315
V +EA Y++++GLD
Sbjct: 136 V----------------------------------SKEEAKKRAAKYIELVGLDE----- 156
Query: 316 VGDEMIR---GISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
+ R +SGGQK+RV G + + P L DE + GLD +I+ N++
Sbjct: 157 --SYLQRSPFELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKEILEIF-DNLN 212
Query: 372 INSGTAVISLLQPAPETYDLFDDI-------ILLSDGQIVYQG 407
T ++ T+DL D++ I DG+I+ G
Sbjct: 213 KQGKTIILV-------THDL-DNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP------KK 926
LN VS + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 927 QETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984
++ F R Q+ I + P T+ E + LR +D R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 985 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL ++S ++ G + GP GK+TLL +A + PT SGT+ + G D+ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ +Y +Q G+ TV + L F + R +PD
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNR-----RPDRAA-- 112
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPA 342
A+ L L D+++ + I +SGG+K+R+ + P
Sbjct: 113 ---ALD------------LLARFALP---DSIL-TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ L +DEI++ LD S I + + + AV+ + + D +I L G
Sbjct: 154 I-LLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQPGH 211
Query: 403 I 403
Sbjct: 212 A 212
|
Length = 223 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 887 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQETFA--RISGYCE 938
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 939 QNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--------EL-NPLRQ 988
Q +PF ++IY+++ + P + K +D+++E E+ + L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 41/219 (18%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNITISGYPKK 926
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR--LSPEVDSETRKMFIDEVMELVELN 984
+R+S + + + +LFS +R L PE +++ E +E+ +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 985 PLRQSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
+ +SL G G+ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + V T RTVV H+ S I +A D + ++ RG
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-07
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 31/183 (16%)
Query: 865 QGVLE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGN 917
+G+L+ D V++ +S RPG L+G SG+GK+T L+ ++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 918 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSE 968
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 969 TRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027
R+ + VME V L+P R P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---P--AEFSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 1028 GLD 1030
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 8e-07
Identities = 67/255 (26%), Positives = 96/255 (37%), Gaps = 55/255 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++ D+S I G LLGP +GK+T+ L G + P G +T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q DN E TVRE L R G+ T RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----------REIEAVIPS--- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L+ L+ AD V +SGG K+R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L +DE +TGLD I LR + G ++ E L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRS--LLARGKTILLTTHFMEEAERLCDRLCVLES 210
Query: 401 GQIVYQG-PRELVLE 414
G+ + +G P L+ E
Sbjct: 211 GRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK V+ I+ G L+G GK+TLL ++G PT SG V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
+ Q+ + + +TVRE +A + +L +L++ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG K+RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
DE LD+ T + L Q I V+ + E L D +++L++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 8e-07
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETF 930
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R G+ Q+ +T+++++ F L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 8e-07
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 38/230 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ--ET 929
+N S G + +MG+SG+GK+TL+ +L T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 930 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
+ Q+ P T+ E++ F ++ P+ + E R + E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALELVGLEGYADK 160
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRN 1043
LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLEL 210
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1083
+T+V H D+ EA D + +MK G +EI + P
Sbjct: 211 QAKLKKTIVFITH----DLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-07
Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 53/256 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L V ++ G L L+GP +GKTTLL A+ G L PT +GTV G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR---REKAAGIKPDPDID 282
+A S+ + + T +L+F + V E+ R R +
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRTPHRSRFDTWTETDRAA 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
V +A+ G D + +SGG+++RV ++ A
Sbjct: 120 V-ERAMERTGVAQFA--------------------DRPVTSLSGGERQRV-----LLARA 153
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
LA L +DE + LD + + + +R+ ++ G ++ + D+++L
Sbjct: 154 LAQATPVLLLDEPTASLDINHQVRTLELVRR--LVDDGKTAVAAIHDLDLAARYCDELVL 211
Query: 398 LSDGQIVYQGPRELVL 413
L+DG++ GP VL
Sbjct: 212 LADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 64/260 (24%), Positives = 93/260 (35%), Gaps = 65/260 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++ +S + G LLGP +GK+T+ + G P +G +T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTR-----YEMLTELARREKAAGI 275
+ Q DN E TVRE L R G+ TR L E AR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK--- 165
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
AD V D +SGG K+R+T
Sbjct: 166 ------------------------------------ADARVSD-----LSGGMKRRLTLA 184
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
++ L +DE +TGLD I LR + G ++ E L D +
Sbjct: 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRS--LLARGKTILLTTHFMEEAERLCDRL 242
Query: 396 ILLSDGQIVYQG-PRELVLE 414
+L G+ + +G P L+ E
Sbjct: 243 CVLEAGRKIAEGRPHALIDE 262
|
Length = 340 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 32/191 (16%)
Query: 881 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 938
G + A++G SGAGK+TL++++AG +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 939 QNDIHSPFVTIYESLLF--SAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 992
+N++ + +T+ +++ S L+L+ E V++ ++ + ++
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR------------ 125
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTG 1048
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + +
Sbjct: 126 LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERK 180
Query: 1049 RTVVCTIHQPS 1059
T++ H P
Sbjct: 181 MTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHD 218
ILK V+ IK G + L+GP SGK+TL + G P +V G + + G D
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGED 65
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGN-ITISGYPKKQETFARISGYCEQND 941
G + A+MG SGAGK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 942 IHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLPG 995
+T+ ++ L L+L+ E V +++ I + ++ LP
Sbjct: 82 F--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR------------LPE 127
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT 1054
LS QR+R+ +A LV I+ +DEP S LD ++ V+ RT++
Sbjct: 128 --QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185
Query: 1055 IHQPS 1059
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISG 935
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 936 -YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994
+ + N +P + I + LRL+ +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 1e-06
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1059 SIDIFEAFDELFLMKRG 1075
++FE D + +++ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 58/234 (24%)
Query: 852 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 911
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 912 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSP 963
G I I G + P + SL LFS +R +
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 964 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRG 1075
E T+ +D A++ +T+R T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPK 925
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 926 KQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVEL 983
E F R G Q +PF ++I +++L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRP--NPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLW 150
Query: 984 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ ++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 151 DAVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 1044 TVDTGRTVVCT 1054
D ++ T
Sbjct: 209 LADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 52/210 (24%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KK 926
E + +L +S + G AL+G SG+GK+TL+ +L G G IT+ G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDL 69
Query: 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
++ + + Q P+ LF LR
Sbjct: 70 EKALSSLISVLNQ----RPY-------LFDTTLR-------------------------- 92
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 93 --NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VL 145
Query: 1047 TGRTVV-CTIHQPSIDIFEAFDELFLMKRG 1075
+T++ T H I E D++ ++ G
Sbjct: 146 KDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 932
L G+S + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 933 ISGYCEQNDIHSPFVTIYESL-LFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPL 986
I+ Y E + + + + LFSA LR +P E + EV++ V L L
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA----LIEVLQQVGLEKL 458
Query: 987 RQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
+ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++ +
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
Query: 1042 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+TV+ H+ + E FD + +M G
Sbjct: 519 A-EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 935 GYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSL 990
Q + S V ++ + + A+ R +E + + V+ PL +
Sbjct: 406 ---RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T 1047
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 463 IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQ 517
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
GRT + H+ S E D + +M G
Sbjct: 518 GRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 40/215 (18%)
Query: 868 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG----- 922
+EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 11 VEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 923 ----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 966
YP I G Q + + + R +D
Sbjct: 70 LSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLD 116
Query: 967 SETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
+ ++E + L+++ L V + G S ++KR I V P + +DE
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
SGLD A IV V + D R+ + H I
Sbjct: 173 DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 44/277 (15%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---LALAGKLDPTLKVSGTVTYNGHDMDE 221
LT+L ++ + G L+GP SGK+T+L + L + ++V G Y+
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH------ 66
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+P R + + H+ +M +G ++ + + P
Sbjct: 67 -MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTEAP-- 112
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVG 340
V + +A E + L ++GL AD D M +SGGQ++RV + +
Sbjct: 113 -VLVLGMARAEAEKRAME--LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P + LF DE+++ LD +++N +R+ + T ++ + + D +
Sbjct: 165 PKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDK 222
Query: 401 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G+IV QG P E+ FR PK + +FL +V
Sbjct: 223 GRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-06
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 34/236 (14%)
Query: 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907
FD+V +S D QGV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 908 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF----SAWLRLSP 963
++ +G I I G I + + V ++ LF +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 964 E--VDSETRKMF-IDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019
D E R + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +DE TS LD A V + + + GRT H+ S + A D + + G
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDNG 545
|
Length = 588 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD--------SE-TRKMFIDEVMELVELNP 985
E+ I I++ L L E+ +E T +D +
Sbjct: 78 D-TERAGI----AIIHQELA------LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK 126
Query: 986 LRQSL-----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
L L P V L Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 127 LLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 1041 VRN 1043
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 927
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 928 ETF-----ARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVME-- 979
F R G Q +PF+ +IY+++ + P++ K +DE++E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 980 LVE---LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
L + N ++ L LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 131 LKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 1037 VMRTVRNTVDTGRTVVCT 1054
+ + N ++ ++ T
Sbjct: 189 IEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 890 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-ITISGYPKKQETFA--RISGYCEQNDI 942
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 943 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002
P +T+ E+L+ A R+ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLI-EAPCRVLGLSKDQALA----RAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVPQRTAAY 230
+ G L + GP +GKT+LL LAG P +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 231 ISQHDNHI-GEMTVRETLAFSARCQGVGTRYEMLTELAR 268
+ H I E+T E L F R G G + LA+
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 978 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
+E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 1038 MRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1075
+ +R V + G VV H D+ A L +MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 52/254 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
ILK +S ++ G ++GP SGK+TL L G PT SG+V +G D+ ++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDR-- 405
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPDPDIDVYM 285
Q HIG + Q V EL A I + + D
Sbjct: 406 -----EQLGRHIGYLP-----------QDV--------ELFDGTIAENIARFGEEADPE- 440
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PALA 344
K I EA + + +L L DT +G+ +SGGQ++R+ + G P L
Sbjct: 441 KVI-----EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL- 493
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDIILLS 399
+ +DE ++ LDS + + GT V+ S L D I++L
Sbjct: 494 VVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQ 545
Query: 400 DGQIVYQGPRELVL 413
DG+I GPRE VL
Sbjct: 546 DGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 887 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-- 944
LT L+G SG GKTT++ ++AG +T +G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 945 ------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 998
P +T++E++ F ++ +P + R M E + +V+L Q
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM---EALRMVQLEEFAQR-----KPHQ 144
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 70/248 (28%), Positives = 101/248 (40%), Gaps = 66/248 (26%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP---TLKVSGTVTYNGHDMDEFVPQRTAAYISQ 233
G L LLGP +GKTTLL A+ G + P T+KV+G G +VPQR
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 234 H----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------ 93
Query: 290 TEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA----- 344
L+ +GL AD VG+ +SGGQ++RV +V ALA
Sbjct: 94 ---------VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE TGLD T + + +GTA++ + D ++LL +G+++
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIE--LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191
Query: 405 YQG-PREL 411
G P++L
Sbjct: 192 ADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 56/247 (22%), Positives = 99/247 (40%), Gaps = 53/247 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L ++ ++PG L+GP +GK+TL L DP SG + +G D+ + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP-DIDVY 284
R + D + +V E + + +PD D +V
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYG-------------------------RPDATDEEVE 447
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A A E + L DT +G+ + +SGGQ++R+ ++ A
Sbjct: 448 AAARAAHAHEF---------ISALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPI 497
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ + Q+V + + T +I + + A D I+++
Sbjct: 498 LLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRLATVLKA-------DRIVVMDQ 549
Query: 401 GQIVYQG 407
G+IV QG
Sbjct: 550 GRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 915
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP-KKQ-E 928
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 929 TFARISGYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
+ + Y Q I +T E+L F RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 988 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1041 VRNTVDTGRTVVCTIHQP 1058
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 856 VDMPEEMKVQGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAGKTTLMDVLAGR 908
V++PEE LE+++V GV+G RPG + ++G +G GK+T + +LAG
Sbjct: 70 VNLPEE------LEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGE 123
Query: 909 KTGGYITGNI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA----WLRLSP 963
+ N+ P E R G ++ + F +YE L + ++ L P
Sbjct: 124 -----LKPNLGRYEDPPSWDEVIKRFRG----TELQNYFKKLYEGELRAVHKPQYVDLIP 174
Query: 964 E-VDSETRKM--------FIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVE 1012
+ V + ++ DEV+E + L + R VS LS + +R+ IA
Sbjct: 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-------VSELSGGELQRVAIAAA 227
Query: 1013 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
L+ + + F DEP+S LD R R +R + G+ V+ H
Sbjct: 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNITISG---YPKKQ 927
L+G+S F LTAL+G SG GK+T + L R ITG I G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 928 ETFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
+ + G Q PF ++Y+++ + L+++ D E ID+ +E
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKE----LIDQRVE----ES 127
Query: 986 LRQSLVGLP-------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
L+Q+ + S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 128 LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187
Query: 1039 RTV 1041
T+
Sbjct: 188 ETL 190
|
Length = 251 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 933 ISGYCEQNDIHSPFV--TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
+ G QN + FV T+ E L F L L P E RK +D + + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKR-VDRALAEIGLEKYRHR 132
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRG 1075
T+V H +++ D + +M RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 841 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 900
P EPH +V+ + V+ ++ VS + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 901 LMDVLAGRKTGGYITGNITISGYP-----KKQETFARISGYCEQNDIHS--PFVTIYESL 953
L+ L G G + GN+ I+G P Q A I+ E H P + + +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 954 LFSAWLRLSPEVDSETRKMFIDEVMEL------VELNPLRQSLVGLPGVSGLSTEQRKRL 1007
S + S KM ID EL ++ ++ + LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 942
R G + L+G +G GK+T + +LAG+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 943 HSPFVTIYESLLFSA----WLRLSPE-VDSETRKM--------FIDEVMELVELNPLRQS 989
+ F + E + ++ L P+ V + ++ +DE+++ +EL +
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 1050 TVVCTIHQPSI 1060
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 58/251 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----- 221
+LK ++ +T L+G GK+TL + L+G L P G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 -FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q+ A + I + +AFS R GV E+ RR
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRR----------- 116
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+D + + + + I+ +S GQKKRV +V
Sbjct: 117 VDEALTLVDAQH-----------------------FRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLR----QNIHINSGTAVISLLQPAPETYDLFDDII 396
A L +DE + GLD + Q++ +R Q H+ + I L+ Y++ D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 397 LLSDGQIVYQG 407
+L GQI+ G
Sbjct: 208 VLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 69/276 (25%), Positives = 108/276 (39%), Gaps = 76/276 (27%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---- 222
IL +S I G+ ++G +GK+T+L L D SG++T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 223 -------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
VPQ T + T+A++ + E + A +AA
Sbjct: 335 LRRAIGIVPQDTVLFND-------------TIAYNIKYGRPDATAEEVGAAA---EAA-- 376
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVT 333
Q + I L DT VG+ RG +SGG+K+RV
Sbjct: 377 -----------------QIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVA 409
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETY 389
++ L +DE ++ LD+ T I LR+ T VI S + A
Sbjct: 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLSTIIDA---- 464
Query: 390 DLFDDIILLSDGQIVYQGPRELVLE---FFASMGFR 422
D+II+L +G+IV +G E +L +A M R
Sbjct: 465 ---DEIIVLDNGRIVERGTHEELLAAGGLYAEMWRR 497
|
Length = 497 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 886 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETFA--RISGYC 937
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 938 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--------NPLRQS 989
Q P +TIY+++ ++L+ V S+ E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
L P S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1050 TVVCTIHQPS----IDIFEAFDELFLMKRGGQEIYVGP 1083
T+V H P+ + + AF L+L G+ I VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 927
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 928 ETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSETRKMFIDEVM 978
R + F Y SL + LR+ P++ + R + E +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 979 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
E V L+P + P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 927
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 928 ------ETFARISGYCEQNDIHSPFVTIYESLL----------FSAWLRLSP-----EVD 966
TF + + E +T+ E+LL + L +P E +
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 967 SETRKMFIDEVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
+ R E + L+E N RQ+ L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 1026 TSGLD 1030
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 924
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 925 KKQE--TFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKM 972
KK + R G Q +PF +IYE++++ LR L V+ R
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 973 FI-DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+ DEV + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 153 ALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 1032 RAAAIV 1037
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 40/166 (24%)
Query: 887 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNITISGYPKKQETFARISGY 936
+TA++G SG GK+T +++++ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 937 CEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP- 994
++ + PF +IY+++ + P++ K +DE++E +SL G
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAI 153
Query: 995 ----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 62/282 (21%), Positives = 107/282 (37%), Gaps = 70/282 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ DVS ++ G + +++G SGK+TLL + ++PT SG V +G D+
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ ++ + + Q + TV E +AF QGV R E+A
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------RAEREERA-------- 141
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+A+ G E + +SGG ++RV +
Sbjct: 142 ----AEALELVGLEGW--------------------EHKYPDELSGGMQQRVG-----LA 172
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
ALA L MDE + LD ++ + L + + ++ + E L D I
Sbjct: 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLR-LQAELQKTIVFITHDLDEALRLGDRI 231
Query: 396 ILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
++ DG++V G P E++ P V +F + V
Sbjct: 232 AIMKDGRLVQVGTPEEILTN---------PANDYVREFFRGV 264
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQ 927
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 928 ETFARI-SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
E R +G Q P +T E+++F LR+ E K EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQ----ARELLAKVGL 126
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1047 TGRTVVCTIHQ 1057
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 48/258 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK ++ I G + ++GP SGK+TL +AG P K+ G + + G + + P+
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDILFKGESILDLEPE 79
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA--RREKAAGIKPDPDIDV 283
A H+G LAF + G LA + K G P+ D
Sbjct: 80 ERA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQG-LPELDPLE 125
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-MVGPA 342
+++ I + LK++G+D + + + G SGG+KKR +M ++
Sbjct: 126 FLEIINEK-----------LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDII 396
LA+ +DE +GLD I + N + S ++I LL Y D +
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGI--NKLMTSENSIILITHYQRLLD-----YIKPDYVH 223
Query: 397 LLSDGQIVYQGPRELVLE 414
++ +G+I+ G EL E
Sbjct: 224 VMQNGKIIKTGDAELAKE 241
|
Length = 252 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 48/222 (21%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-- 942
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 943 --HS----PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996
S P +++ E++ + L++ V E RK + E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1051
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1052 VCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1083
+ H S EAF D + +M +G QE+Y P
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISG---YPKKQE--T 929
VS F +TA++G SG GK+T+ ++ + +TG I + Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 930 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQ 988
R G Q P ++IY++++ A +L+ V+ ++ ++ V L + ++
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-06
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 17/213 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK----QETF 930
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-S 989
Q P +++ E++ L E+ +M + M L N LR+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNA-MYLRAKNLLRELQ 129
Query: 990 LVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
L V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 130 LDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-- 187
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079
V C ++ +A + + R GQ +
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 926
+ L VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 927 QETFARIS---GYCEQN-DIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 980
+E I G QN D + F+ T+ + + F + V + K ID++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 981 VELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV- 1037
V + ++ LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 1038 --MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQEIYVG 1082
M +R T +T++ H D+ EA D++ + G+ I G
Sbjct: 183 KIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 58/256 (22%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----V 223
LKDVS + G ++G SGK+TL L G L P +GT+T G + E V
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV 79
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
++ DN TV++ +AF GV R EM+ R A ++ V
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMV----ERVDQA-LR-----QV 128
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
M+ E R +SGGQK+RV ++
Sbjct: 129 GMEDFLNR---------------------------EPHR-LSGGQKQRVAIAGVLALQPD 160
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIILL 398
+ +DE ++ LD +++ +RQ + G V+S+ T+DL D +I++
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQ-LKEQKGITVLSI------THDLDEAAQADRVIVM 213
Query: 399 SDGQIVYQGPRELVLE 414
+ G+I+ +G E + +
Sbjct: 214 NKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQ-- 927
V +N VS R G + +MG+SG+GK+TL+ + T G + I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
E + Q+ P T+ E++ F ++ P + E R E +ELV L
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALELVGLEGWE 154
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRN 1043
LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 155 HKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
+T+V H D+ EA D + +MK G
Sbjct: 210 ---LQKTIVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-06
Identities = 22/111 (19%), Positives = 44/111 (39%)
Query: 1279 IPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAA 1338
+ +LV + I+ + G + L + G + +L N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1339 IVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDM 1389
+V ++ L + F G + P P +P + +W + P + GL+ +GD+
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 45/217 (20%), Positives = 71/217 (32%), Gaps = 52/217 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ +S + G + GP SGKTTLL LAG P +G V NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRD 69
Query: 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R Y+ ++V E L F + ++ LAR
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+GL D + +S GQ++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE +T LD + + + H G V+
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 60/277 (21%), Positives = 109/277 (39%), Gaps = 60/277 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ D S ++ G + +++G SGK+TL+ L ++PT G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ ++ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------KAEREERA-------- 145
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
++A+ G E Y D+ +SGG ++RV +
Sbjct: 146 ----LEALELVGLE-----GY---------------ADKYPNELSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD ++ + L + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 59/165 (35%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
++GVS + + G L+G SG GK+TL ++ G T G I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---------- 74
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------ 986
DI ++ E R+ + E++E V L
Sbjct: 75 -------KDIT--------------------KLSKEERRERVLELLEKVGLPEEFLYRYP 107
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 9e-06
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 54/247 (21%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LK + +K G + +++GP SGK+TLL + +P SGT+ +G + +
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKK 69
Query: 225 Q-----RTAAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Q N +TV E TLA ++ KA
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLA--------------PIKVKGMSKA----- 110
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE- 336
EA L+ +GL A D +SGGQ++RV
Sbjct: 111 ----------------EAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARA 149
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ + P + LF DE ++ LD ++++ ++ G ++ + ++ D +I
Sbjct: 150 LAMNPKVMLF-DEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVI 206
Query: 397 LLSDGQI 403
+ DG+I
Sbjct: 207 FMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 68/259 (26%)
Query: 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA-- 228
+S ++ G + L+GP +GK+TLL +AG L SG++ + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG----LLPGSGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
AY+SQ M V ++ LT ++
Sbjct: 71 RAYLSQQQTPPFAMPV----------------FQYLT------------------LHQPD 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI---SGG--QKKRVTTGEMMVGPA 342
A+ + +V + D++ R + SGG Q+ R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+ L +DE LD + ++++ L Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 50/267 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVP-- 224
L +V+ I+ G L+G SGK+TL+ L G L PT SG + +G D+ D+ V
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 225 --QRTAAYISQHDNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ + Q+ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+ ++GLD + D+ +SGGQK+RV ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + GLD +I+N + +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFASMGFRCPK 425
+ QG PRE+ +E S+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 62/250 (24%), Positives = 93/250 (37%), Gaps = 65/250 (26%)
Query: 177 PGR-LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMD--EFVP--QRTA 228
P R +T L GP SGKT+L+ +AG P G + NG D + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
Y+ Q TVR L + M
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALALFM 347
D + +LG++ D G +SGG+K+RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
DE LD +I + LR I+I ++ + E L D +++L +G++
Sbjct: 153 DEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208
Query: 405 YQGPRELVLE 414
GP E V
Sbjct: 209 ASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 862 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 921
M++ V L +S R G + L+G +GAGK+TL+ +AG G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 922 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 978
G P + AR Y Q + +++ L L + +E ++EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 979 ELVELNPLRQSLVGLPGVSGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLD 1030
E + L +G V+ LS E QR RL AV L NP+ ++ +DEP + LD
Sbjct: 112 EALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLD 165
Query: 1031 ARAAAIVMRTVRNTVDTGRTVVCTIH 1056
A + R + G VV + H
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 885 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKK---QETFA 931
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 932 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
RI +Q + PF +IYE++ F A R++ + ++ ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA--RING---------YTGDMDELVE-RSLRKAA 139
Query: 991 V--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 817 QSSSQSLSLAEAEASR-----PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 871
++ S S A+R P++K + +PH + + +Y + KV + K
Sbjct: 6 EAKETSKSAPAETATRDIYLPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSK 65
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGY 923
V TA++G SG GK+T + + + TG + I G
Sbjct: 66 YV--------------TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111
Query: 924 PKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-------RLSPEVDSETRKMFI- 974
+ + G Q +PF +I++++ + L +L V+ RK +
Sbjct: 112 FTDEVLLRKKIGMVFQKP--NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALW 169
Query: 975 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
DEV + ++ N L GLS Q++RL +A L P I+ +DEPTS LD +A
Sbjct: 170 DEVSDRLDKNAL-----------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKAT 218
Query: 1035 A 1035
A
Sbjct: 219 A 219
|
Length = 286 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 888 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 944
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 945 PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------- 994
P++ +I E+LL A + DE+ E+ ++ + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 995 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 323 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
G SGG+KKR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEF 415
Q L D I +L DG+IV G +EL LE
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEI 195
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 47/223 (21%)
Query: 156 RIIPSKKRHL-----TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKV 208
+II S HL LK + +T L+GP GK+T L L L P + +
Sbjct: 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63
Query: 209 SGTVTYNGHD-----MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
+G V+ G + D ++ + Q N ++ E + + R GV
Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGV------- 115
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
D V +A+ T ++A + + + E
Sbjct: 116 ---------------KDKAVLDEAVETSLKQAAIWDEVKDHL------------HESALS 148
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
+SGGQ++RV ++ + +DE ++ LD ++ QI N L
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 41/247 (16%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHD---MDE 221
+L V+ I +T L+GP SGK+TLL +L P +VSG V +G D MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q N I +++ E +A + L L + +K ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLK----------LNRLVKSKK--------EL 119
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
++ + Q + + D LD A + SGGQ++R+ +
Sbjct: 120 QERVRWALEKAQLWDEVKDR------LDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L DE + LD T +I + + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 402 QIVYQGP 408
QIV GP
Sbjct: 222 QIVEWGP 228
|
Length = 250 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 50/253 (19%), Positives = 95/253 (37%), Gaps = 50/253 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ D I G + +++G SGK+T + L ++PT +G + +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
V ++ + Q MT+ + + G E R+EKA
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA-------- 110
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
E LK++GL+ DE+ SGG ++RV +
Sbjct: 111 ------------LEL-------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD + + L++ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQGPRELVL 413
G+IV G + +L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 44/203 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNG-----HDMD 220
L D++ I ++T L+GP GK+T L L L +K+ G V +G D+D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N M++ + +A+ R G+ + E+
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL------------------ 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ I ++ LK L D D + + +SGGQ++R+ +
Sbjct: 121 ---------------DKIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIA 163
Query: 340 GPALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD +T +I
Sbjct: 164 VKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 66/266 (24%), Positives = 104/266 (39%), Gaps = 82/266 (30%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
+ +LK +S IK G LLG GK+TLL L DP G + NG + ++
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY 407
Query: 223 -----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
V QR H+ T+R+ L LA
Sbjct: 408 SEAALRQAISVVSQRV---------HLFSATLRDNLL-----------------LA---- 437
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-----GLDVCADTMVGDEMIRGISG 326
P+ A++ V+ L+ L GL + +G E R +SG
Sbjct: 438 ----APN----------ASDEALIEVLQQVGLEKLLEDDKGL----NAWLG-EGGRQLSG 478
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386
G+++R+ ++ A L +DE + GLD+ T QI+ L + H + T ++
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI------ 530
Query: 387 ETYDL-----FDDIILLSDGQIVYQG 407
T+ L FD I ++ +GQI+ QG
Sbjct: 531 -THRLTGLEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 58/266 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVP 224
T++ +++ IK G + LLGP GKTT+L +AG PT G + +G D+ +
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
QR + Q M++ E + + + GV E +R K A
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA----------- 120
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L+++ L D V D+ ISGGQ++RV ++ P +
Sbjct: 121 ------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKV 157
Query: 344 ALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
LF DE + LD++ + + + L+Q +I S + + E + + D +I+++
Sbjct: 158 LLF-DEPLSNLDANLRRSMREKIRELQQQFNITS----LYVTHDQSEAFAVSDTVIVMNK 212
Query: 401 GQIVYQG-PRELVL----EFFAS-MG 420
G+I+ G P+EL F AS MG
Sbjct: 213 GKIMQIGSPQELYRQPASRFMASFMG 238
|
Length = 351 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 47/182 (25%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH 234
+ G L+ G +GKTTLL LAG L SG + +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI-ATEGQ 293
H+ G+K D + + G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 294 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353
A + L ++GL DT+V R +S GQKKR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 354 LD 355
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 13/173 (7%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 943
G + G +GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 944 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003
++ E+L F L K + +V L +L V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH------GRRAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 16/174 (9%)
Query: 863 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIT 919
KV + LN VS G + ++G SGAGK+TL+ ++L +G I
Sbjct: 9 KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD 68
Query: 920 ISGYPKKQETFARIS-GYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 976
++ + T AR G Q N + S T++ ++ L +P+ + + + + E
Sbjct: 69 LTTLSNSELTKARRQIGMIFQHFNLLSSR--TVFGNVALPLELDNTPKDEIKRK---VTE 123
Query: 977 VMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
++ LV L S P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLALVGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 892 GVSGAGKTTLMDVLAGRK---TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948
G SG GK+TL+ ++AG + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 949 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKR 1006
+ E++ F L+L+ E +++V E+++L L R+ LS QR+R
Sbjct: 92 VAENMSFG--LKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQR 141
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 926
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 927 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKMFI-D 975
R G Q +PF +I+E++ + LR L+ V+ R + D
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 976 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
EV + L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKD-----RLHESALGLSG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 933 ISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
+ + +H + E +LFS +R + +E+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 992 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
P G G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 1043 NTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ RTV+ H+ S E D++ ++K+G
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 58/187 (31%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
+ G+ F +TAL+G SG+GK+T + L R N TI AR++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL-NRM-------NDTIDI--------ARVT 79
Query: 935 G--YCEQNDIHSPFVTIYE-----SLLFSAWLRLSP-------------EVDSETRKMFI 974
G DI+ + +YE ++F R +P E K +
Sbjct: 80 GQILYRGIDINRKEINVYEMRKHIGMVFQ---RPNPFAKSIYENITFALERAGVKDKKVL 136
Query: 975 DEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
DE++E L+Q+ + L LS Q++RL IA + P I+ MD
Sbjct: 137 DEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMD 188
Query: 1024 EPTSGLD 1030
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 942
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 943 HSPFV---TIYESLLFSAWLRLSPEVDSETRKMFID--EVMELVELNPL-RQSLVGLPGV 996
P++ T+ E++ F SP + + K D + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFG-----SP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 1054
+ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 1055 IHQ 1057
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 38/240 (15%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNITIS--- 921
+ K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 922 GYPKKQETFARISGYC------EQNDIHSPFVTIYESLL----------FSAW------- 958
GY ++ C E+ D + + + F+ +
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 959 --LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1016
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
P + DEPT LD + A +V + V +G ++V T H P + I + D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
T + G SGKTTL+ +AG P + ++G ++ P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGG+K+RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++I+ L + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 61/261 (23%), Positives = 94/261 (36%), Gaps = 72/261 (27%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+DVS I G L GP +GK+TLL + G+ PT G + NGHD + +
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHD----LSRL 69
Query: 227 TAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
I IG + TV E +A R G R E+ RR
Sbjct: 70 KGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV--- 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVT 333
L ++GL + +SGG+++RV
Sbjct: 122 --------------------------LDLVGL--------KHKARALPSQLSGGEQQRVA 147
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393
+V L DE + LD +++I+ + I+ GT V+ A +L +
Sbjct: 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF-EEIN-RLGTTVLM----ATHDLELVN 201
Query: 394 D----IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 202 RMRHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-05
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 29/229 (12%)
Query: 839 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 898
VL T EVV V+ + + + VS R G + + GV+G G+
Sbjct: 243 VLRVVKPPSTPGEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297
Query: 899 TTLMDVLAG-RKTGGYITGNITISGYPKKQETFARIS-----GYCEQNDIH---SPFVTI 949
+ L++ ++G RK +G I ++G R Y ++ +++
Sbjct: 298 SELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSL 354
Query: 950 YESLLFSAWLRLSPEVDSETRKMFIDE------VMELVELNPLRQSLVGLPGVSGLSTEQ 1003
E+L+ P R F+D EL+E +R P LS
Sbjct: 355 AENLVLG-RHDKKPFS----RGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGN 408
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
+++L +A EL P ++ +PT GLD A + + D G+ V+
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+LK++S +K G LLG SGK+TLL L G L P G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 33/162 (20%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 931
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 932 RISGYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
RI GY Q D P L + +LRL P +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 69/241 (28%)
Query: 843 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 902
EP E V V + G + D VS R G + + G+ GAG+T L
Sbjct: 253 EPPEEGIGEPVLEV---RNLSGGGKVRD-------VSFTVRAGEILGIAGLVGAGRTELA 302
Query: 903 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP---------FVT----- 948
L G + +G I + G + I SP +V
Sbjct: 303 RALFGAR--PASSGEILLDG---------------KPVRIRSPRDAIKAGIAYVPEDRKS 345
Query: 949 --------IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000
I E++ ++ R S R+ ID E + L + S
Sbjct: 346 EGLVLDMSIAENITLASLRRFS-------RRGLIDRRKERALAERYIRRL----RIKTPS 394
Query: 1001 TEQR---------KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
EQ +++ +A L +P ++ +DEPT G+D A A + R +R G+ +
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 1052 V 1052
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-----YPKKQETFARISGYCEQ 939
G TA++G +G GK+TL+ L+ T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 940 NDIHSPFVTIYESL---------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
N +T+ E + LF+ W + + ++ T+ M + L QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS- 140
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNI-------TISGYPK 925
++ VS + G + ++G SGAGKTTL ++AG T G + + T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
+ R G Q P T+ ++L + L L E+ K I M +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1046 -----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
+ +T + H + + D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGY--PKKQETFAR 932
V+ + G A++G +G+GK+TL+ L G + T G +T G I+ KK + +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 933 ISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQS 989
G Q H F T+ + + F E D++ + E++ELV L L +S
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARS 142
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTG 1048
L G Q +R+ IA L P ++ +DEPT+GLD + +M + + G
Sbjct: 143 PFELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG 196
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
T V H D D++ +M +G
Sbjct: 197 LTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-05
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 933
+L+G+S P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 934 SGYCEQNDIHSPFVTIYES-LLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLV 991
D+ I +S +LFS +R + + SE + E +E + + + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 992 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 932
LL+ ++ RPG + G SGAGKT+L+ LAG + G+ I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL----WPWGSGRI-SMPADSALL-- 459
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
+ Q + P T+ E+L + P + + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDE 508
Query: 993 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084
+ H+P++ F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+L++VS I+PG ++GP SGK+TL + G L PT SG V +G D+ ++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDP-- 71
Query: 227 TAAYISQHDNHIG 239
++ +H+G
Sbjct: 72 -----NELGDHVG 79
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---- 216
K R + LK +S I+ G + +GP +GKTT L L+G L PT SG V G
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPW 86
Query: 217 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GTRYEMLTEL 266
+F+ +R Q ++ V ++ A + R + L+EL
Sbjct: 87 KRRKKFL-RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 49/216 (22%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG--YITGNITISGYPKKQET 929
L+ VS G A++G +G+GKTT ++ L TG +I + K ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE------KNKKK 76
Query: 930 FARISGYCEQNDIHSPFV---------------------------TIYESLLFSAWLRLS 962
E+ I TI + ++F +S
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VS 133
Query: 963 PEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020
V E K + +ELV L + L++S L G Q++R+ +A L P +
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSG------GQKRRVALAGILAMEPDFL 187
Query: 1021 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
DEPT+GLD + ++ N G+T++ H
Sbjct: 188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196
+ + ++ + + + LKD+S I G ++G +GK+TLL
Sbjct: 13 FRIYHEKSYSLKKRLKGLAKGGRKVAEF-WALKDISFEIYKGERVGIIGHNGAGKSTLLK 71
Query: 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
+AG PT SG V G + A I E+T RE + G+
Sbjct: 72 LIAGIYKPT---SGKVKVTG---------KVAPLIELGAGFDPELTGRENIYLRGLILGL 119
Query: 257 GTRYEM 262
TR E+
Sbjct: 120 -TRKEI 124
|
Length = 249 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 5e-05
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
+ DVS K G+ ++GP +GKTTL+ L DPT G + +G D+
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
N + ++R+++A + G + R G + D +VY
Sbjct: 400 --------NTVTRESLRKSIATVFQDAG------LFNRSIRENIRLGREGATDEEVY--- 442
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347
E +A D+ LK DT+VG+ R +SGG+++R+ ++ A L +
Sbjct: 443 ---EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVL 495
Query: 348 DEISTGLDSSTTFQI---VNCLRQN 369
DE ++ LD T ++ ++ LR+N
Sbjct: 496 DEATSALDVETEARVKNAIDALRKN 520
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 6e-05
Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 72/260 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L VS ++PG + LLG +GK+TL+ L+G P SG + +G + P+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDA 80
Query: 228 AAY----ISQHDNHIGEMTVRETLAFS---ARCQGVGTRYEMLTELARREKAAGIKPDPD 280
A + Q + + ++V E + R G+ R M R +A +
Sbjct: 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM------RRRAREL----- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
L LGLD+ DT+VGD +S Q++ V E
Sbjct: 130 ----------------------LARLGLDIDPDTLVGD-----LSIAQRQMV---EIARA 159
Query: 337 MMVGPALALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAV--IS--LLQPAPETY 389
+ + L +DE + L T F ++ L+ G A+ IS L E +
Sbjct: 160 LSFDARV-LILDEPTAALTVKETERLFDLIRRLKA-----QGVAIIYISHRL----DEVF 209
Query: 390 DLFDDIILLSDGQIVYQGPR 409
++ D I +L DG++V P
Sbjct: 210 EIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MDEF 222
L D+S + PG L +++GP +GKTT++ + GK P G+V + G D + E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 868 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGG---YITG 916
+ DK +L + ++ + +MG SG+GK+TL+ VL + K G Y
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 917 NI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 975
+I I ++E G Q P ++IY+++ + L+ + K ++
Sbjct: 79 DIFQIDAIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVE 131
Query: 976 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
E + V L + P S LS Q++RLTIA L P ++ MDEPTS +D +
Sbjct: 132 ECLRKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 1036 IVMRTVRNTVDTGRTVVCTIHQP 1058
+ + + + +V H P
Sbjct: 191 AIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 7e-05
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 46/236 (19%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYI 231
+ G+ L+GP +GKT+LL AL G L G++ NG ++ E P+ + +++
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLG----FLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATE 291
Q + + T+R+ + PD + +A+
Sbjct: 429 GQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL--- 459
Query: 292 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351
+ A V L GLD T +GD+ G+S GQ +R+ ++ P L +DE +
Sbjct: 460 -ENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPT 513
Query: 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD+ + ++ L + V L+ + +D I ++ DGQIV QG
Sbjct: 514 ASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1057 QPSI 1060
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 7e-05
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARIS 934
VS G + AL+G SG GK+TL+ +LAG + G + + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994
Q+ P +T+ +++ F + D + V E++ L +++ P
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFAKRKP 147
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVC 1053
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 1054 TIHQPSIDIFEAFD---ELFLMKRGG-------QEIYVGPLGRHSCHLISYFEAIPGVQK 1103
H D EA + +M RG +EIY P R+S I GV K
Sbjct: 206 VTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLK 261
|
Length = 377 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 7e-05
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 858 MPEEMKVQGV--LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG- 907
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 908 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVD 966
R G + N I + G Q +PF +I++++ F P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 967 SETRKMFIDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVA 1015
T + +DEV+E LRQ+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 1016 NPSIIFMDEPTSGLD 1030
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 49/215 (22%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K IL D++ I+ G++ ++G SGK+TLL + G L+ SG V NG +
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQETP 63
Query: 221 EFVPQR-------TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
++ Y+ Q+ I TV E L +L
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENL-----------------DLGL----- 101
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
Y K E +E L+ +GL++ + + +SGG+++RV
Sbjct: 102 ---------KYKKLSKKEKREKKK---EALEKVGLNLKLKQKIYE-----LSGGEQQRVA 144
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
++ P + DE + LD ++++ L +
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 930
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 931 ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLS----------PEVDSETRKMFIDEVME 979
A + + Q I P V+ + +LRL+ PE+D I+E ++
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 980 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
LV ++P S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 136 LVGMDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 1040 TVRNTVDTGRTVVCTIH 1056
+ + + +++ H
Sbjct: 193 GINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 63/258 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFV 223
LK+VS I G +LG SGK+T+ L G L P +K+ G +T + ++ E
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKENLKEI- 81
Query: 224 PQRTAAYISQH-DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ I Q+ DN IG TV + +AF G + + +K
Sbjct: 82 -RKKIGIIFQNPDNQFIG-ATVEDDIAF-------GLENKKVP----PKK---------- 118
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VG 340
MK I I D KV D D+ + +SGGQK+RV ++ +
Sbjct: 119 ---MKDI---------IDDLAKKVGMEDYL------DKEPQNLSGGQKQRVAIASVLALN 160
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-----LFDDI 395
P + +F DE ++ LD +I + + +IS+ T+D L D +
Sbjct: 161 PEIIIF-DESTSMLDPKGKREIKKIMVD-LRKTRKKTLISI------THDMDEAILADKV 212
Query: 396 ILLSDGQIVYQG-PRELV 412
I+ S+G+++ QG P+E++
Sbjct: 213 IVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 25/156 (16%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCEQN 940
G A++G SGAGK+TL++++AG T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 941 DIHSPFVTIYE--SLLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLP 994
++ +T+ + L + L+L+ + + R+M I++++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 55/250 (22%), Positives = 97/250 (38%), Gaps = 59/250 (23%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMD 220
+L+DVS + PG +T L+GP SGK+T++ L P G V +G +
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYE 82
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT-RYEMLTELARREKAAGIKPDP 279
+ + Q ++++ +A+ G+ + +E + E A++ A
Sbjct: 83 HKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHAHSF---- 132
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVTTGEM 337
+ L DT VG+ +G +SGGQK+RV
Sbjct: 133 -------------------------ISELASGYDTEVGE---KGSQLSGGQKQRVAIARA 164
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFD 393
++ L +DE ++ LD+ + Q V + VI S ++ A D
Sbjct: 165 LIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVLVIAHRLSTVERA-------D 216
Query: 394 DIILLSDGQI 403
I++L G+I
Sbjct: 217 QILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--------- 922
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 923 ----YPKKQETFARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFI 974
P ++ ++ G Q+ P T+ +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 975 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1035 AIVMRTVRN-TVDTGRTVVCTIHQ 1057
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 9e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 964 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023
EV ++K+ I + + L ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1024 EPTSGLDARAAAIVMRTVRN 1043
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 996 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1052 VCTIHQPSIDIFEAFDELFLMKR 1074
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 927
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPL 986
++ E + S +T+ E+L + + + + I V EL L+
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHER 130
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
R G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 131 RIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1047 TGRTVVCTI 1055
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFA 931
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 932 RIS-GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETR-KMFIDEV--MELVELNP 985
R G Q+ H + T+Y+++ + + D R +D+V ++ + P
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
++ LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 136 IQ-----------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 1046 DTGRTVVCTIH 1056
G TV+ H
Sbjct: 185 RVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 9e-05
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 888 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------ITISGYPKKQETFARISGYC 937
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 938 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997
Q+ P + +L + + F D+++ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-04
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYIS 232
++PG LLG +GKTT L G T SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGD---TTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q D +T RE L AR +GV
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV----------------------------------PA 2044
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
+E + ++ ++ LGL + AD + G SGG K++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K +LK VS I G + ++G SGK+TLL L G +PT SG V +NG +
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSL 69
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 58/261 (22%), Positives = 91/261 (34%), Gaps = 66/261 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG SG++ + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGSGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A AY+SQ M V L +PD
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH-------------------------QPD---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE--MMVG 340
K + L LD D + +SGG+ +RV + +
Sbjct: 100 ---KTRTEL-------LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 341 PAL-----ALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
P L +DE LD S ++++ L Q G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTLRHA 199
Query: 393 DDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 55/263 (20%), Positives = 96/263 (36%), Gaps = 44/263 (16%)
Query: 152 LNYLRII--PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS 209
L+ L +S I G ++G +GK+TLL A+AG L PT S
Sbjct: 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---S 60
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQ-----HDNHIGEMTVRETLAFSA-RCQGVGTRYEML 263
G + +G D+ + + A +++ E+T+ E LA + R + G +
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN 120
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
+ + +A G LGL+ +G
Sbjct: 121 ERRR--------------SSFRERLARLG-------------LGLENRLSDRIGL----- 148
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGGQ++ ++ + P L +DE + LD T + V L I + +
Sbjct: 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTA-EFVMELTAKIVEEHKLTTLMVTH 207
Query: 384 PAPETYDLFDDIILLSDGQIVYQ 406
+ D + +I+L G+IV
Sbjct: 208 NMEDALDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 68/260 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FV 223
LK +S I G T LLGP +GK+TLLL L G P G V G +++ +V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWV 77
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ D+ + TV + +AF G+ E+ RR + A +K V
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA-LKA-----V 126
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPA 342
M + Y+L S GQKKRV G + + P
Sbjct: 127 RMWDFRDK-------PPYHL---------------------SYGQKKRVAIAGVLAMDPD 158
Query: 343 LALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FD 393
+ + +DE LD T +I++ L G VI T+D+ D
Sbjct: 159 V-IVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIV------ATHDVDLAAEWAD 206
Query: 394 DIILLSDGQIVYQGPRELVL 413
+I+L +G+++ +G + L+
Sbjct: 207 QVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KKR++ + VS IK G L+G GK+TL + G +PT SG + + G D+
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDIT 78
Query: 221 EF 222
+
Sbjct: 79 KL 80
|
Length = 268 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 62/278 (22%), Positives = 106/278 (38%), Gaps = 57/278 (20%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
+ + L +VS + G++ ++G +GK+TL+ + PT SG+V +G D+
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTL 72
Query: 223 V-PQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ T A I QH N + TV +A EL K
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP-------------LELDNTPK----- 114
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
E L ++GL D +SGGQK+RV
Sbjct: 115 ----------------DEIKRKVTELLALVGL-----GDKHDSYPSNLSGGQKQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ L DE ++ LD +TT I+ L++ I+ G ++ + + D +
Sbjct: 154 ALASNPKVLLCDEATSALDPATTQSILELLKE-INRRLGLTILLITHEMDVVKRICDCVA 212
Query: 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
++S+G+++ QG V E F+ PK F++
Sbjct: 213 VISNGELIEQGT---VSEIFSH-----PKTPLAQKFIR 242
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L L +++ I G+LT+++G GK++LLLA+ G++ + G V ++ + E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 QRT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ T AY +Q + TV E + F + RY+ +T+ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTG 335
D D+ L T +G+ RGI SGGQ++R+
Sbjct: 122 DIDL--------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTA 228
DVS I G + LLG GK+TLL LAG PT +G + +G D+ P QR
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPI 93
Query: 229 AYISQHDNHIGEMTVRETLAF 249
+ Q MTV + +AF
Sbjct: 94 NMMFQSYALFPHMTVEQNIAF 114
|
Length = 377 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 36/209 (17%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 930
+L +L VS G AL G SGAGK+TL+ L Y+ + I + + +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL----YANYLPDSGRI--LVRHEGAW 73
Query: 931 ARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVME-LVE------ 982
++ + + TI Y S +LR+ P V + ++ V E L+E
Sbjct: 74 VDLAQASPREVLEVRRKTIGY----VSQFLRVIPRVSA------LEVVAEPLLERGVPRE 123
Query: 983 ---------LNPLR--QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L L + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 124 AARARARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
Query: 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
+V+ + G ++ H +
Sbjct: 183 ANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 37/204 (18%), Positives = 58/204 (28%), Gaps = 69/204 (33%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 943
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 944 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003
E + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 1004 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1055
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1056 HQPSI----DIFEAFDELFLMKRG 1075
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISGYP--KKQET 929
L ++ + +TA++G SG GK+T ++++ +TG + +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 930 FARIS---GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL 983
+ G Q +PF +I++++ + P + K + E++E L ++
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYG------PRIHGTKNKKKLQEIVEKSLKDV 139
Query: 984 -------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 140 ALWDEVKDRLHTQALSLSG------GQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1057
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1058 PSIDIFEAF--DELFLMKRG 1075
D+ EA D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 60/194 (30%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LKD+S I G ++GP +GK+TLL LAG+L P SGTV
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVG--------E 383
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y QH + + T E L+E PD D
Sbjct: 384 TVKIGYFDQHRDELDPDK---------------TVLEELSEGF-----------PDGD-- 415
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM---IRGISGGQKKRVTTGEMMVGP 341
E V YL G G++ + +SGG+K R+ ++++ P
Sbjct: 416 ---------EQEVRA--YLGRFGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQP 457
Query: 342 ALALFMDEISTGLD 355
L +DE + LD
Sbjct: 458 PNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
IL DVS I+PG ++GP SGK+TLL L G P SG+V Y+G D+
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLA 518
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L +S G++T L+G SGK+TLL L P+ G + + ++ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
G + + ++GL A +V +SGG+++R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD + ++ L + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQET 929
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 930 FARISGYCEQNDIHSPFV---TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMEL-VELN 984
+ + YC Q +P + T+Y++L+F +R P+ +F+D++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLERFALPDT 129
Query: 985 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L ++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 130 ILTKN------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 51/207 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFVPQ 225
+KDVS +T ++GP GK+T+L ++ D P+ +V+G + + D+
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI------ 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP--DIDV 283
+D + +++R RR KP+P + +
Sbjct: 74 --------YDRGVDPVSIR-----------------------RRVGMVFQKPNPFPAMSI 102
Query: 284 YMKAIA-------TEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTG 335
Y IA EA+ I + LK + L D D + + M +SGGQ++R+
Sbjct: 103 YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIA 160
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQI 362
+ + MDE ++ LD +T +I
Sbjct: 161 RTIAVKPEVILMDEPASALDPISTLKI 187
|
Length = 252 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 931
L+ V+ G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 932 RISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
+ G Q + F TI + + F L LS + E + + M +V L
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS---EEEI-ENRVKRAMNIVGL-----D 133
Query: 990 LVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
S LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 134 YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+L DVS +KPG++ LLGP +GK+TL+ + G + P G + NG +VPQ+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGKLRIGYVPQK 75
|
Length = 251 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 63/246 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFV 223
L D++ I G L ++G GKT+L+ A+ G+L ++ + G+V Y V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------V 684
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP-DPDID 282
PQ + I TVRE + F G+ +E R +A + D+D
Sbjct: 685 PQVS---------WIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLD 724
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ TE E V ISGGQK+RV+ + +
Sbjct: 725 LLPGRDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNS 759
Query: 343 LALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
D+ + LD+ Q+ + C++ + + V + L P L D IIL+S+G
Sbjct: 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEG 815
Query: 402 QIVYQG 407
I +G
Sbjct: 816 MIKEEG 821
|
Length = 1495 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 50/268 (18%)
Query: 149 EDILNYLRI---IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--- 202
ED+ N R+ I K ILKD++ I + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYINDK----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63
Query: 203 DPTLKVSGTVTYNGHD---MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
D +KV G V Y G D +D ++ + Q N +++ + +A+ + G+ +
Sbjct: 64 DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEK 123
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319
E+ + + G+ +VY + + Q
Sbjct: 124 REIKKIVEECLRKVGLWK----EVYDRLNSPASQ-------------------------- 153
Query: 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+SGGQ++R+T + L MDE ++ +D + I + + + + A++
Sbjct: 154 ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE---LKNEIAIV 206
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + + D + L +G++V G
Sbjct: 207 IVSHNPQQVARVADYVAFLYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 66/257 (25%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
HL + D++ ++ G +LGP +GK+TLL +AG L P SG++T NG D
Sbjct: 12 HHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTT 66
Query: 223 VP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
P +R + + Q +N +TV + + G+G G+K +
Sbjct: 67 PPSRRPVSMLFQENNLFSHLTVAQNI-------GLGL-------------NPGLKLNAAQ 106
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+ AIA + +G++ + G +SGGQ++RV +V
Sbjct: 107 REKLHAIARQ--------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL----------QPAPETYDL 391
L +DE + LD + +++ + Q ++LL + AP +
Sbjct: 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQ----ERQLTLLMVSHSLEDAARIAPRS--- 200
Query: 392 FDDIILLSDGQIVYQGP 408
++++DG+I + GP
Sbjct: 201 ----LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 947 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006
++IYE++ F +V + IDE +E L + VG G S LS Q++R
Sbjct: 1310 MSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQR 1366
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1057
+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQE--T 929
L V+ G TA +G +G+GK+T+M +L G G + I+ K ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 930 FARISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRK------MFIDEVMELV 981
+ G Q F T+ + + F +S E ++E + I E L
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE-EAEALAREKLALVGISE--SLF 139
Query: 982 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
E NP LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 140 EKNPFE-----------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF 188
Query: 1042 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +G T+V H D+ D ++++++G
Sbjct: 189 KKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 887 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFA----RISGYCEQND 941
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 942 IHSPFV-TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVEL-----NPLRQSLVGLP 994
+ FV +IYE++ ++ L + D E + + + ++ V L + L+Q+ + L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALALS 144
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 145 G------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 30/160 (18%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GNITISGYPKKQETFARISGYC 937
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 938 EQNDIHSPF-VTIYESLLFSAWLR-----LSPEVDSETRKMFI-DEVMELVELNPLRQSL 990
Q +PF +IY+++ + A + + V+ R+ + DEV + L+QS
Sbjct: 97 FQKP--NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-----KLKQS- 148
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 149 ----GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 48/180 (26%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNITISGYPKKQETF 930
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 931 ARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVE 982
R I F Y SL + L ++ + + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV- 141
Query: 983 LNPLRQSLVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 1030
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ---------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKD+S I PG L+G +GK+TLL +AG+L+P G VT+
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWG--------ST 62
Query: 226 RTAAYISQ 233
Y Q
Sbjct: 63 VKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 38/165 (23%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--------GNITISGYPKKQETFA 931
+TAL+G SG GK+T + D++ G + G+I + + KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 932 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-----NP 985
G Q +PF +I++++ + LR+ E D + + ++E ++ L +
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDK 139
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
L +S +GL G Q++RL IA + +P +I MDEP S LD
Sbjct: 140 LDKSALGLSG------GQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216
+ LKDVS + G L+G +GK+TLL LAG P SGTVT G
Sbjct: 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 930
L VS G L+G +GAGK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
R+S +P +T E++ + L LS + E IDE++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID- 137
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRG 1075
TV+ H PS I D ++++G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 932
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 933 ISGY----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLR 987
Q + P +++ E++LF L S +KM + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 42/190 (22%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQE--- 928
L GVS +TAL+G SG GK+T + L R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 929 --TFARISGYCEQNDIHSPF-VTIYESLLFSA----------WLRLSPEVDSETRKMFI- 974
+ G Q+ +PF +I E++ + RL D + +
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 975 ---------DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
DEV + ++ N L GLS Q++RL IA L +P +I MDEP
Sbjct: 179 RSLRQAALWDEVNDRLDDNAL-----------GLSGGQQQRLCIARCLAVDPEVILMDEP 227
Query: 1026 TSGLDARAAA 1035
S LD A +
Sbjct: 228 ASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 316 VGDEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ L+ +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 54/260 (20%), Positives = 98/260 (37%), Gaps = 57/260 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KR ++ VS +K G + LLGP +GKTT + G + P SG + +G D+
Sbjct: 11 GKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDIT 65
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + A Y+ Q + ++TV E + +G+ + R EK
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE-------REEKL---- 114
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
+ L+ + + +SGG+++RV
Sbjct: 115 -----------------------EELLEEFHITHLRKSKAS-----SLSGGERRRVEIAR 146
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGTAVISLLQPAPETYDLFD 393
+ P L +DE G+D I ++ I I + G V+ ET + D
Sbjct: 147 ALATNPKF-LLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITD 201
Query: 394 DIILLSDGQIVYQG-PRELV 412
++ +G+++ +G P E+
Sbjct: 202 RAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 54/208 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----MD 220
LK ++ I+ ++T L+GP GK+T L L L P++K+ G V +G D +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
++ + Q N M++ + +A+ R G+ + + L E+ + K A + +
Sbjct: 79 VNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKK-LDEIVEKSLKGAALWDEV 136
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ A+ G+SGGQ++R + +
Sbjct: 137 KDRLKKSAL----------------------------------GLSGGQQQR-----LCI 157
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI 362
ALA L MDE ++ LD +T +I
Sbjct: 158 ARALAVEPEVLLMDEPTSALDPISTLKI 185
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 44/202 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
+K+V I G++T L+GP GK+T+L +L L + G V ++G D+ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +AF AR G + L E + R+ A
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAV------- 140
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
D C D + +E +SGGQ++R+ +
Sbjct: 141 ---------------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ MDE + LD +T +I
Sbjct: 172 EPEVILMDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205
PG + L++GPP SGKTTL ALA +L P
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 43/208 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S + PG L +L+GP +GKTTL+ + GK P G V ++G D
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD-TD------- 69
Query: 228 AAYISQHDNH-IGEMTVRETLAFSARCQGVG------TRYEMLTELARREKAAGIKPDPD 280
+++ H I G+G T +E LT E A D
Sbjct: 70 ---LTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNR--DKS 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ + A + + D L +GL D + +S GQK+ + G ++
Sbjct: 112 VFASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQ 368
L +DE G+ + T + L+
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 876 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITI---SGYPKKQET 929
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 930 FARISGYCEQNDIHSPF-----VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL- 983
A I+ N F + I SL + + + EL+ L
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 984 -NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ + Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1043 NTVDTGRTVV 1052
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
LR+ L+ P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1046 DTGRTVVCTIHQPSIDIF 1063
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 937
+S R G A++G +G+GK+TL +LAG +G + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 938 EQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
Q I F SL + LRL+ +++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 Y--YPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 60/255 (23%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FV 223
L DV+ +K G ++LG SGK+T+ + L P+ G V +G D + +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWD 82
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A + Q+ DN I V E +AF E L GI P+
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGP---------ENL----------GIPPE---- 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG----ISGGQKKRVT-TGEM 337
E D LK +G+ E R +SGGQK+RV G +
Sbjct: 120 -----------EIRERVDESLKKVGMY---------EYRRHAPHLLSGGQKQRVAIAGIL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+ P +F DE + LD S ++VN +++ ++ G +I + E + D II+
Sbjct: 160 AMRPECIIF-DEPTAMLDPSGRREVVNTIKE-LNKKYGITIILITHYMEEAVEA-DRIIV 216
Query: 398 LSDGQIVYQG-PREL 411
+ G++V +G P+E+
Sbjct: 217 MDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-04
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 47/231 (20%)
Query: 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDN 236
++T LG +GKTT L L G L PT SGTV G D++ +++ QH+
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNI 1013
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV E + F A+ +G +EA
Sbjct: 1014 LFHHLTVAEHILFYAQLKG----------------------------------RSWEEAQ 1039
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + L+ GL +E + +SGG +++++ VG A + +DE ++G+D
Sbjct: 1040 LEMEAMLEDTGLH-----HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ I + L + SG +I E L D I ++S G++ G
Sbjct: 1095 YSRRSIWDLL---LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
T + ++S + + LLGP +GK+TLL + G L PT SG + ++GH
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW 64
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
+L +++ IKPG ++GP SGK+TL L P G V +G D+ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPAW 528
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q +N + ++R+ +A +P
Sbjct: 529 LRRQMGVVLQ-ENVLFSRSIRDNIALC---------------------------NPGAPF 560
Query: 284 -YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ A + I L +T VG E +SGGQ++R+ +VG
Sbjct: 561 EHVIHAAKLAGAHDFI-------SELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNP 612
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L DE ++ LD + I+ +R+ I G VI + T D II+L GQ
Sbjct: 613 RILIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQ 668
Query: 403 IVYQGPRELVL 413
I G E +L
Sbjct: 669 IAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 48/284 (16%)
Query: 157 IIPSKKRHLT-----ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVS 209
II +K HL+ L +S + LT L+GP GK+T L L D +K++
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
G + + G ++ Y S+ D + E+ + F Q + + +A
Sbjct: 64 GEIKFEGQNI----------YGSKMD--LVELRKEVGMVFQ---QPTPFPFSVYDNVAYG 108
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
K AG+K D ++ + + ++A + + D + D + SGGQ+
Sbjct: 109 LKIAGVK---DKELIDQRVEESLKQAAIWKE----------TKDNL--DRNAQAFSGGQQ 153
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
+R+ + + +DE ++ LD ++ +I L + H + V LQ A
Sbjct: 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR-- 211
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
+ D L +G ++ GP E + F PK++ +D+L
Sbjct: 212 -ISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 931
LN S F+ +T ++G +G+GK+T++ + G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 932 RIS---GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
R+ G Q + F TI + + F P E ++ +V EL++L L
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFG------PVNLGENKQEAYKKVPELLKLVQLP 140
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVD 1046
+ V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 141 EDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++ H + DE+ +M G
Sbjct: 200 YKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 51/258 (19%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KKR ++ DVS + G + LLGP +GKTT + G + P SG + + D+
Sbjct: 15 KKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDIT 69
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + A Y+ Q + ++TV + + R + L + R+E+ +
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----IREKDLKKAERKEELDAL- 123
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
L+ + D+ +SGG+++RV
Sbjct: 124 --------------------------LEEFHITHLRDSKAY-----SLSGGERRRVEIAR 152
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
+ P L DE G+D I ++ G V+ ET D+ D
Sbjct: 153 ALAANPKFILL-DEPFAGVDPIAVIDIQRIIKHLKDRGIG--VLITDHNVRETLDICDRA 209
Query: 396 ILLSDGQIVYQG-PRELV 412
++SDG+++ +G P E+V
Sbjct: 210 YIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 25/178 (14%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----E 928
+L +S F G + ++G SGAGK+TL+ ++ + G+I I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVID 74
Query: 929 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
+I +Q P + T+ +++ + L+ VD E + +V LN
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVEY-------YLSIVGLN- 121
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 122 ---KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 7e-04
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLL--LALAGKLDPTLKVSGTVTYNGHDM-----D 220
LK+++ I +T ++GP GK+T + L L ++ P +K++G + YNG ++ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N + ++ + +A+ R G + + L E+ EK+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKK-LQEIV--EKS-------- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+K +A D D + + +SGGQ++R+ +
Sbjct: 136 ----LKDVAL-----------------WDEVKDRLHTQAL--SLSGGQQQRLCIARALAT 172
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-04
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 932
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 933 ISGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
+ QN +H TI ++ ++ + S E E +M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 990 L---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
L +G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQ 527
Query: 1047 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
RT + H+ S E DE+ +++ G
Sbjct: 528 KNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 34/169 (20%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNITISGYPKKQETFARIS 934
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 935 GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-- 991
++ + PF +I+E++ + +R R+ ++E +E N LR + +
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALWD 149
Query: 992 ----GLPGVS-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
L ++ LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
+L +VS I G + ++G SGK+TLL L G PT SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSK 75
|
Length = 233 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 8e-04
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FA 931
LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 932 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R G QN D T+ + + F + P + R +DE + V + +
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNMLDFKTR- 136
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
+ LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 137 ----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
V +I +D + D + +MK G
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 57/211 (27%), Positives = 78/211 (36%), Gaps = 53/211 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDE 221
L+IL V V+K G L+G SGK+TLL LAG D + SG V+ G H MDE
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE------MLTELARREKAAGI 275
R R + VG ++ L L E A +
Sbjct: 80 --EARAK----------------------LRAKHVGFVFQSFMLIPTLNALENVELPALL 115
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
+ + A A L+ LGL D + +SGG+++RV
Sbjct: 116 RGESSRQSRNGAKA------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALA 158
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
G LF DE + LD T +I + L
Sbjct: 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----MD 220
L D+S + ++T L+GP GK+T L L L P +V G + +G + +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +A+ R GV + + + R + A +
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL----- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
D D + E G+SGGQ++R+ +
Sbjct: 136 ---------------------------WDEVKDRL--HESALGLSGGQQQRLCIARALAV 166
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD T +I
Sbjct: 167 EPEVLLMDEPASALDPIATQKI 188
|
Length = 253 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 9e-04
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 65/251 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR- 226
L +VS I G + L+G +GKTTLL L G T SG + ++G D+ ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKI 77
Query: 227 ---TAAYISQHDNHIGEMTVRETLA---FSARCQGVGTRYEMLTEL-----ARREKAAGI 275
A + + MTV E LA F A R + + EL RR + AG
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG- 136
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
TM SGG+++ + G
Sbjct: 137 --------------------------------------TM---------SGGEQQMLAIG 149
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
++ L +DE S GL QI + + Q G + + Q A + L D
Sbjct: 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ--LREQGMTIFLVEQNANQALKLADRG 207
Query: 396 ILLSDGQIVYQ 406
+L +G +V +
Sbjct: 208 YVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 28/116 (24%)
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSS 357
L++LGL AD + +SGG+++RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 407
+++ LR+ + G V+ +L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRR-LARERGKTVVMVL------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 34/244 (13%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L + +KPG + ++GP SGKTTLL + P +GT+ +D
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITID----- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
TA +SQ I ++ Q VG ++ R I P V +
Sbjct: 69 -TARSLSQQKGLIRQLR-----------QHVGFVFQNFNLFPHRTVLENIIEGP---VIV 113
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGPALA 344
K E EA L +GL R +SGGQ++RV + + P +
Sbjct: 114 KGEPKE--EATARARELLAKVGL-----AGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
LF DE ++ LD +++N +RQ + T VI + D+ D I + G+IV
Sbjct: 167 LF-DEPTSALDPELVGEVLNTIRQ-LAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIV 223
Query: 405 YQGP 408
QGP
Sbjct: 224 EQGP 227
|
Length = 250 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 73/260 (28%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++++ S ++PG+ L+G SGK+T+ +AG P SG + ++G +E +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLT---------ELARREKAAGIKP 277
A ++ M ++ F GT + LT +L R K A I
Sbjct: 551 LANSVA--------MVDQDIFLFE------GTVRDNLTLWDPTIPDADLVRACKDAAIH- 595
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DV G +A + E +SGGQ++R+
Sbjct: 596 ----DVITSR--PGGYDAELA--------------------EGGANLSGGQRQRLEIARA 629
Query: 338 MVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVI-----SLLQPAPETYD 390
+V P++ L +DE ++ LD T I + LR+ G T +I S ++
Sbjct: 630 LVRNPSI-LILDEATSALDPETEKIIDDNLRRR-----GCTCIIVAHRLSTIRDC----- 678
Query: 391 LFDDIILLSDGQIVYQGPRE 410
D+II+L G++V +G E
Sbjct: 679 --DEIIVLERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALAL 345
A+ + EA + +YL +GLD D+ + + G+SGGQK+RV G + + P + +
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 346 FMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
F DE + GLD Q++ + N V + ++ D++I++ G+
Sbjct: 200 F-DEPTAGLDPKGEHEMMQLILDAKAN-----NKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 403 IVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV--T 457
I+ G P E+ S + P+ V + ++ + +K Y+ T
Sbjct: 254 ILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDLIKKD------PKYKKLYQKQPRT 304
Query: 458 VQEFAEAFQSFHVG 471
+++ A+A F G
Sbjct: 305 IEQLADAINEFIKG 318
|
Length = 320 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214
+DVS + PG + ++G SGKTTLL ++G+L P +GTVTY
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTY 65
|
Length = 258 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 53/245 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S + G++ L+G +GK+TLL L+G P +G++ +G +M F
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEM-RFASTTA 75
Query: 228 A-----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A I Q + + EMTV E L L +L + GI
Sbjct: 76 ALAAGVAIIYQELHLVPEMTVAENL--------------YLGQLPHK---GGI------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
V + + E +E L+ LG+D+ DT + +S GQ++ V + + A
Sbjct: 112 VNRRLLNYEARE-------QLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNA 159
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ DE ++ L + F+++ LR G ++ + E + L D I +
Sbjct: 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAE-----GRVILYVSHRMEEIFALCDAITVFK 214
Query: 400 DGQIV 404
DG+ V
Sbjct: 215 DGRYV 219
|
Length = 501 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 937
VS + G A++G +GAGKTTL+++L ++ G I I G T
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT-------- 403
Query: 938 EQNDIHSPFVTIYESL-LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------- 988
+ + T+++ LF+ +R + + E +EV E +
Sbjct: 404 -RESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNG 460
Query: 989 --SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+LVG G + LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 461 YDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAID 515
Query: 1047 T---GRTVVCTIHQPS 1059
RT H+ S
Sbjct: 516 ALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L++V+ +KPG++ + GP SGK+TLL + D + G + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRF----------- 374
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
HD + ++ + + +R V + ++ A G +PD
Sbjct: 375 --------HDIPLTKLQLDS---WRSRLAVVSQTPFLFSDTVANNIALG-RPD------- 415
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVGPAL 343
A E + + + +L L DT VG+ RG+ SGGQK+R++ ++ A
Sbjct: 416 -ATQQEIEHVARLASVHDDILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDIIL 397
L +D+ + +D T QI++ LRQ G VI S L A +I++
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQ---WGEGRTVIISAHRLSALTEA-------SEILV 521
Query: 398 LSDGQIVYQGPRELVLE 414
+ G I +G + + +
Sbjct: 522 MQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 29/166 (17%)
Query: 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITISGYPKKQETFARISGY 936
G+ + ++G +G GKTT + +LAG G T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 937 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996
I + + LL S D T F E+ + +++ + V
Sbjct: 70 -----IKADYEGTVRDLLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 890 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---------PKKQETFARISGYCEQN 940
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 941 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PLRQSLVGLP 994
P +T+ ++L+ A R+ + + ++++E + L PL
Sbjct: 91 YNLWPHLTVQQNLI-EAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFPLH------- 141
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 142 ----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIV 197
Query: 1055 IHQ 1057
H+
Sbjct: 198 THE 200
|
Length = 242 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNITISGYPKKQ 927
LN +S + G TAL+G +G+GK+T+ ++ G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 928 ETFARIS---GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 982
+T I G QN + FV T+ + + F R P E K+ + +V+ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRAVPR--PEMIKI-VRDVLADVG 132
Query: 983 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 1043 N-TVDTGRTVVCTIHQPSIDIFEA 1065
TV+ H DI EA
Sbjct: 188 KLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 56/257 (21%), Positives = 105/257 (40%), Gaps = 52/257 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM----DE 221
LK ++ I ++T L+GP GK+TLL L L +K++G +T +G D+ D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+ + Q N M++ E +A+ R QG+ + + + R + A + ++
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW--DEV 135
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+K+ A G+SGGQ++R+ +
Sbjct: 136 KDRLKSHAF--------------------------------GLSGGQQQRLCIARTIAME 163
Query: 342 ALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPETYD-----LFD 393
+ MDE ++ LD T +I + L++N I V +Q A D L
Sbjct: 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTI---VIVTHSMQQARRISDRTAFFLMG 220
Query: 394 DIILLSDGQIVYQGPRE 410
+++ D Q+++ P++
Sbjct: 221 ELVEHDDTQVIFSNPKD 237
|
Length = 249 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 46/210 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
L D++ I R+T L+GP GK+TLL L P +++G + YNG ++ D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +A+ R G + K
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE------------KNKK-------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMM- 338
+ I + LK L D D + + +SGGQ++R+ +
Sbjct: 121 -------------TLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQRLCIARTLA 165
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
V P + L MDE + LD T +I + +
Sbjct: 166 VNPEVIL-MDEPCSALDPIATAKIEDLIED 194
|
Length = 253 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 324 ISGGQKKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
+SGG+ +RV E+ P LF +DE STGL Q++ ++ I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 382 LQPAPETYDLFDDIILL------SDGQIVYQG 407
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 6/212 (2%)
Query: 504 LLKANISRELLLMKRNSFVY-IFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562
L+ + ++L+ + I LI + + L R + D F
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRF---FPPWAYAIPSWILKIPVSFLEVAVW 619
++++ FS + + + + + + V+ L +
Sbjct: 95 ILMSVLFSGIFS--FSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLV 152
Query: 620 VFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLL 679
+ + +++G LLL + + + A+ G+ +L L
Sbjct: 153 LLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLG 212
Query: 680 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 711
L G E + W + + +PLTYA +A+
Sbjct: 213 FLSGVFFPLELLPAWLQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 64/261 (24%), Positives = 102/261 (39%), Gaps = 67/261 (25%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K +H T+L +VS +K G LLG GK+TL L G P+ G V++ G +
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLA 77
Query: 221 EF------VPQRTAAYISQHDNHIGEM----TVRETLAFSARCQGVGTRYEMLTELARRE 270
+ +R + Q + I + TVRE + R L L + E
Sbjct: 78 KLNRAQRKAFRRDIQMVFQ--DSISAVNPRKTVREIIREPLR---------HLLSLDKAE 126
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A L+ + LD V D+ +SGGQ +
Sbjct: 127 RLAR------------------------ASEMLRAVDLDD----SVLDKRPPQLSGGQLQ 158
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
RV + V P L L +DE + LD ++ L++ + GTA + + T+
Sbjct: 159 RVCLARALAVEPKL-LILDEAVSNLDLVLQAGVIRLLKK-LQQQFGTACLFI------TH 210
Query: 390 DL-----F-DDIILLSDGQIV 404
DL F ++++ +GQIV
Sbjct: 211 DLRLVERFCQRVMVMDNGQIV 231
|
Length = 268 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 325 SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLR--QNIH------INSG 375
SGGQ++R+ ++ P L L +DE ++ LD S Q+++ LR Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 41/241 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LK ++ + PG + L+GP SGK+T+ L PT G V +G
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVP-------- 544
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q+D+H V VG + + R A G+ PD ++
Sbjct: 545 ----LVQYDHHYLHRQVA----------LVGQEPVLFSGSVRENIAYGLTDTPDEEI--M 588
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
A A + I DT VG E +SGGQK+R+ +V L
Sbjct: 589 AAAKAANAHDFIM-------EFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE ++ LD+ L Q + V+ + T + D I++L G +V
Sbjct: 641 LDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLS-TVERADQILVLKKGSVVEM 694
Query: 407 G 407
G
Sbjct: 695 G 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 7/253 (2%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LK++S I+ G + +LG +GK+ L+ L G +D SG + Y+ ++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGY 71
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ + + G E + F + R + + A D +D
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
++A+ G E + ++ + + + + R +SGG+K+RV +
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT--HIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY-DLFDDIILLSDGQI 403
DE + LD T + N L + + + + V++ PE DL D I L +G+I
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWLENGEI 247
Query: 404 VYQG-PRELVLEF 415
+G P E+V F
Sbjct: 248 KEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 65/282 (23%), Positives = 96/282 (34%), Gaps = 83/282 (29%)
Query: 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYIS 232
G I + +LGP GKTT + LAG L P + D + T +Y
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD------------EGDIEIELDTVSYKP 67
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q+ E TVR+ L S+ + T TE+ KP
Sbjct: 68 QYIKADYEGTVRDLL--SSITKDFYTHPYFKTEI--------AKP--------------- 102
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
L ++ D V + +SGG+ +RV + A +DE S
Sbjct: 103 -------------LQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSA 144
Query: 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII---LLSDGQIVYQG-P 408
LD +R+ N TA + + DII L+D IV++G P
Sbjct: 145 YLDVEQRLMASKVIRRFAENNEKTAFV-----------VEHDIIMIDYLADRLIVFEGEP 193
Query: 409 RELVLEFFASMGFRCP---KRKGVADFLQE--VTSRKDQRQY 445
+ G P R G+ FL+ +T R+D
Sbjct: 194 --------SVNGVANPPQSLRSGMNRFLKNLDITFRRDPETG 227
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNITISGYPKKQETFARISGYC 937
+TA +G SG GK+T + D++ G G Y G T S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 938 EQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996
++ +PF ++I++++ + R + D + + +++ ++ L + + G
Sbjct: 170 QKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAG- 223
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 34/221 (15%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--KQ 927
D +L GVS +TA++G SG GK+T + L + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 928 ETFAR---ISGYCEQNDIHSPF-----VTIYESLLFSAWL---RLSPEVDSETRKMFIDE 976
+ R ++ Q + P +++Y+++ + + R E+D ++
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 977 VMELVEL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
++ +L + + +S + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 1032 RAAAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 1070
A+ V +++ + + T+V H + F F
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1057
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 1058 PSIDIFEAFDELFLMKRGGQE 1078
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 324 ISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+SGGQ++R+ A+A L +DE ++ LD T I+ LR
Sbjct: 97 LSGGQRQRI---------AIARALLRDPPILILDEATSALDPETEALILEALRALAK-GK 146
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
VI+ T D II+L DG+
Sbjct: 147 TVIVIA---HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 318 DEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
D++ R SGG ++R+ +V P L +FMDE + GLD S ++++ LR + G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLR-GLVRELGL 203
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ + L D ++++ GQ+V G + VL+
Sbjct: 204 AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKD+S IKPG L+ GP +GK++L ALAG L P SG + + F+PQ
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPW--GSGRIGMPEGEDLLFLPQ 71
Query: 226 R 226
R
Sbjct: 72 R 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 43/181 (23%)
Query: 887 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETF---ARI 933
+TA +G SG GK+T + D + K + G + I G Y A++
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGIDVYSVDTNVVLLRAKV 88
Query: 934 SGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETR-KMFIDEVMELVELNPLRQSLV 991
G Q +PF +IY+++ + P++ + K +DE++E L V
Sbjct: 89 -GMVFQKP--NPFPKSIYDNVAYG------PKLHGLAKNKKKLDEIVE----KSLTS--V 133
Query: 992 GL---------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
GL LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 1043 N 1043
Sbjct: 194 E 194
|
Length = 251 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 52/207 (25%)
Query: 868 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927
LE K VLL VS + G LT ++G +G+GK+TL+ L IS +
Sbjct: 670 LEPK-VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL---------LSQFEIS----EG 715
Query: 928 ETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-----VMELV 981
+A S Y Q AW+ ++ V +F DE + + V
Sbjct: 716 RVWAERSIAYVPQQ----------------AWI-MNATVRGNI--LFFDEEDAARLADAV 756
Query: 982 ELNPLRQSLVGLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 1030
++ L L L G GL TE Q+ R+++A + AN + +D+P S LD
Sbjct: 757 RVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Query: 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
A V+ G+T V HQ
Sbjct: 815 AHVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQE 928
L VS +TAL+G SG GK+T + L I G ++I G Y +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 929 T--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
+ G Q +PF ++IY+++ + P + +K +D V+E N
Sbjct: 88 VVELRKNVGMVFQKP--NPFPMSIYDNVAYG------PRIHGANKKD-LDGVVE----NA 134
Query: 986 LRQSLV--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
LR + + P +S LS Q++RL IA L P II DEPTS LD + A +
Sbjct: 135 LRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI 193
Query: 1038 MRTVRNTVDTGRTVVCTIH 1056
+ N + T+V H
Sbjct: 194 EDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 926
+N +S +TAL+G SG GK+T + D++ ++ G I + I
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 927 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL 983
R G Q +PF +IY ++ + L+ + E RK +DE++E L +
Sbjct: 97 VVNLRREIGMVFQKP--NPFPKSIYNNITHA--LKYA----GERRKSVLDEIVEESLTKA 148
Query: 984 -------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ L S + L G Q++RL IA L P+++ +DEP S LD
Sbjct: 149 ALWDEVKDRLHSSALSLSG------GQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 32/216 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFAR 932
LNG++ + G L A++G G GK++L+ L K G++ +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQS 989
I QND ++ E++LF L + + + ++ L +L L ++
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDT 1047
+G GV+ LS Q++R+++A + +N I D+P S +DA + V V
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
+T + H I D + +M GG+ +G
Sbjct: 812 NKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 34/175 (19%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIT---GNITISGYP 924
L ++ +TA +G SG GK+TL+ ++ G I NI
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 925 KKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL--RLS-PEVDSE-----TRKMFID 975
A++ G Q +PF ++IY+++ F L +LS E+D T+ +
Sbjct: 89 IAL-LRAKV-GMVFQKP--TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 976 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
EV + L QS G LS Q++RL IA + P ++ +DEP S LD
Sbjct: 145 EVK-----DKLHQS--GY----SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 872 LVL-LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR---KTGGYITGNITI 920
LVL ++ S G + LMG+SG+GK+TL+ V G K G G++ +
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGD---GSVDV 92
Query: 921 SGYPKKQETFAR---ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 977
+ R +S +Q + P+ T+ E++ F L + +E RK +DE
Sbjct: 93 ANCDAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQGMPKAERRKR-VDEQ 148
Query: 978 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ELV L G LS ++R+ +A I+ MDEP S LD
Sbjct: 149 LELVGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
DVS + PG + ++G SGKTTLL AL+ +L P +G V Y D
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRD 69
|
Length = 258 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213
L DV+ I G ++G SGK+TLL L G L PT SGTVT
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVT 65
|
Length = 290 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 40/254 (15%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTY 214
R PS + + +LK +S I G + ++G SGK+TL+ L G LD PT SGT
Sbjct: 12 RSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPT---SGTYRV 67
Query: 215 NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
G D+ A +H I + RY +L+ L +
Sbjct: 68 AGQDVATLDADALAQLRREHFGFIFQ------------------RYHLLSHLTAAQNV-- 107
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
++ + + + L+ LGL+ + +SGGQ++RV+
Sbjct: 108 -----EVPAVYAGLERKQRLLRAQE--LLQRLGLEDRVEYQPSQ-----LSGGQQQRVSI 155
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
++ + DE + LDS + +++ L Q + G VI ++ P+ +
Sbjct: 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQ--LRDRGHTVI-IVTHDPQVAAQAER 212
Query: 395 IILLSDGQIVYQGP 408
+I + DG+IV P
Sbjct: 213 VIEIRDGEIVRNPP 226
|
Length = 648 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 42/209 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----M 219
ILK+V+ I +T L+GP GK+T + L L P + G + +G D +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
D ++ + Q N + ++ + +A+ R G + D
Sbjct: 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--------------------EDDE 116
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D +++ E +A + D L D+ G+SGGQ++R+ +
Sbjct: 117 D---FIEERVEESLKAAALWDEVKDKL-----------DKSALGLSGGQQQRLCIARTIA 162
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+ MDE + LD +T +I + + +
Sbjct: 163 VSPEVILMDEPCSALDPISTTKIEDLIHK 191
|
Length = 250 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFARI 933
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 934 SGYCE----------QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 983
E QN P +++ E++ + +R P+ + E R + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 984 NPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 1036
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 1037 VMR 1039
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202
V G++ G LTLL G P +GK+TL L LA +
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1445 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-256 Score=2360.59 Aligned_cols=1340 Identities=53% Similarity=0.924 Sum_probs=1257.5
Q ss_pred cchhHhhhHHHHhhCCChhhhhhcccccC-CCCcccccccccChHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC
Q 000523 36 EDDEEALKWAALEKLPTYNRLRKGILTTS-RGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL 114 (1445)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1445)
+||||+|||||+|||||++| +++.+. ++ ++|+.+++..++..+.++..+..++|+++++.+++++.+++ ++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 45999999999999999999 555432 22 79999999999999999999999999999999999999998 88
Q ss_pred CcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHH
Q 000523 115 PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTL 194 (1445)
Q Consensus 115 ~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTL 194 (1445)
|.++++++++.+++++..| ||+.|...+.++.++...+.. ++.+.+||+|+|+.++||||++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999998766 999999999999888766543 5566789999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcC
Q 000523 195 LLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274 (1445)
Q Consensus 195 L~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1445)
|++|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|+|||||+|+|+++|++++.|++ +..|++++.
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999998878889999999999999999999999999999999999999999999999998887 445555431
Q ss_pred CCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCC
Q 000523 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354 (1445)
Q Consensus 275 ~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgL 354 (1445)
.++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHH
Q 000523 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (1445)
Q Consensus 355 D~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ 434 (1445)
|++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCcccccccccccccccccCcHHHHHHHHHHHHHH
Q 000523 435 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELL 514 (1445)
Q Consensus 435 ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~ 514 (1445)
++++++++.|+|..++.++.+.++.|+.+.|.+++.++++..+++.+.++.+.++.++..++|.++.|+|+++|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCC
Q 000523 515 LMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRF 594 (1445)
Q Consensus 515 ~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~ 594 (1445)
+++||.+++++++++.+++++++|++|+++.+ ++..++..+.|++||++++.+|+++++++++++++|||+|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999885 5566788899999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 000523 595 FPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 674 (1445)
Q Consensus 595 y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~ 674 (1445)
|++|++.++++++++|++++++++|.+|+||++|+.++++|||.+|+++++.+++++++|++++++++++.+|+.+|++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCccccc------------ccC---CccccHHHHHhh
Q 000523 675 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKF------------TQD---SSETLGVQVLKS 739 (1445)
Q Consensus 675 ~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~~~------------~~~---~~~~~G~~~L~~ 739 (1445)
++++.+++||+|+..+||+||+|++|++|++|+++++++|||++.+|.|. ... ...++|..+++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 99999999999999999999999999999999999999999999999997 111 235678899998
Q ss_pred cCcc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCCccccccCCCCCCccc
Q 000523 740 RGFF-----AHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIR 814 (1445)
Q Consensus 740 ~g~~-----~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1445)
+++. ...+|+|+++|+++||.++|++++++++.|+++..+.+..+..+...+........ ... .
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~---------~~~--~ 758 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG---------SSS--E 758 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc---------ccc--c
Confidence 8887 77889999999999999999999999999999998888877655443321110000 000 0
Q ss_pred cccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCC
Q 000523 815 GQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 894 (1445)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~s 894 (1445)
.+ ...+....++++++.|+.|..++++||.|.+++|-+++.+| +++++|+||||.++||.++||||+|
T Consensus 759 --------~~-~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~S 826 (1391)
T KOG0065|consen 759 --------IE-KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGES 826 (1391)
T ss_pred --------cc-ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCC
Confidence 00 00001111356788899999999999999999999888877 6788999999999999999999999
Q ss_pred CCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 000523 895 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 974 (1445)
Q Consensus 895 GaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v 974 (1445)
|||||||||+||||+++|.++|+|.|||+|.++.+|+|.+|||+|+|+|.+.+||+|+|.|+|+||++.+++.+++.++|
T Consensus 827 GAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 827 GAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred CCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 000523 975 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1053 (1445)
Q Consensus 975 ~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p-~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~ 1053 (1445)
|+|++.+||.+++|.+||.+| +|||++|||||+||+||++|| .||||||||||||+++|..|++++|+++++|+||||
T Consensus 907 e~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 907 EEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999 999999999999999999999 899999999999999999999999999999999999
Q ss_pred EecCccHHHHHhhceEeEEecCcEEEEEcCCCCchhhHHHHHHhCCCcccCCCCCCccceEEEeccchhhhhhcccHHHH
Q 000523 1054 TIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 1133 (1445)
Q Consensus 1054 ~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~d~~~~ 1133 (1445)
|+||||.++|+.||++++|++||++||+||+|++|+++++|||++||++ |++..|||||||||++.+.+...+.||++.
T Consensus 986 TIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~ 1064 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEI 1064 (1391)
T ss_pred EecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHH
Confidence 9999999999999999999999999999999999999999999999985 666669999999999998888888999999
Q ss_pred HhhcHHHHHHHHHHHhhCCCCCC-CCCCCCCCccCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcc
Q 000523 1134 YKRSDLYRRNKALIEDLSRPPPG-SKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWD 1212 (1445)
Q Consensus 1134 ~~~S~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~ 1212 (1445)
|++|++|++++++++++++++++ +.+..++++|++|+|.|++.|+|||+++|||+|+|+++|++++++.||++|++||+
T Consensus 1065 w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~ 1144 (1391)
T KOG0065|consen 1065 WKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWK 1144 (1391)
T ss_pred HhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeee
Confidence 99999999999999999999998 88888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000523 1213 LGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAI 1292 (1445)
Q Consensus 1213 ~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i 1292 (1445)
+|+ ++||++|.+|++|+++++.+.+++..++|.+..||.++|||+++||||+.||++||+++|+||.++++++|++|
T Consensus 1145 ~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~ 1221 (1391)
T KOG0065|consen 1145 VGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLI 1221 (1391)
T ss_pred cCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 994 68999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred eecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccc
Q 000523 1293 VYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWAN 1372 (1445)
Q Consensus 1293 ~Y~~~g~~~~~~~f~~f~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~s 1372 (1445)
+|+|+||++++.+|+||++++++..+|++++|||+.+++||.++|+++++++++++++||||++|++.||.||+|+||+|
T Consensus 1222 ~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~ls 1301 (1391)
T KOG0065|consen 1222 TYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLS 1301 (1391)
T ss_pred eeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccccc---------CCCCcHHHHHHhhcC----CccCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 000523 1373 PIAWTLYGLVASQFGDMDDKKM---------DTGETVKQFLKDYFD----FKHDFLGVVAAVLVVFAVLFGFLFALGIKM 1439 (1445)
Q Consensus 1373 p~~y~~~~l~~~~~~~~~~~~~---------~~g~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1439 (1445)
|++|.++|++..++||.+..|. ++|+|+++|++++|| |.++.......+..+|.+++.+++.+++|+
T Consensus 1302 P~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y 1381 (1391)
T KOG0065|consen 1302 PVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKY 1381 (1391)
T ss_pred cHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHH
Confidence 9999999999999999988773 246799999999999 999999888888999999999999999999
Q ss_pred hcccCC
Q 000523 1440 FNFQRR 1445 (1445)
Q Consensus 1440 ~~~~~r 1445 (1445)
.|||||
T Consensus 1382 ~~~wrn 1387 (1391)
T KOG0065|consen 1382 LNFWRN 1387 (1391)
T ss_pred HHHHHh
Confidence 999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-238 Score=2368.47 Aligned_cols=1426 Identities=62% Similarity=1.073 Sum_probs=1275.7
Q ss_pred cccccccCCCcccCC---C----CCcchhHhhhHHHHhhCCChhhhhhcccccC-----CCC---cccccccccChHhhH
Q 000523 18 ASRWNTNSIGAFSRS---S----REEDDEEALKWAALEKLPTYNRLRKGILTTS-----RGE---ANEVDVYNLGLQERQ 82 (1445)
Q Consensus 18 ~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~ 82 (1445)
.++|.. +++|++. + ..|||||+|+|||+||||||+|+|++++.+. .|+ .+|+|+++|+.++++
T Consensus 18 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1470)
T PLN03140 18 RSSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQ 95 (1470)
T ss_pred hhhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHH
Confidence 345744 6888542 2 2578999999999999999999999999652 122 236999999999999
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCcc
Q 000523 83 RLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKK 162 (1445)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 162 (1445)
.++||++++.++|+++|++++++|.|++|+++|++||||+||+|+++++++++.+||++|.+.+.++.+.+.++...+++
T Consensus 96 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~ 175 (1470)
T PLN03140 96 KFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKK 175 (1470)
T ss_pred HHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876555434455
Q ss_pred ccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 000523 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1445)
.+++||+|+|+.++|||+++|+||||||||||||+|+|+++|+.+++|+|++||+++++..+++.++||+|+|.|++++|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 67889999999999999999999999999999999999999887889999999999887777788999999999999999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+|||.|+++|++.+.++++..+..+++++.++.|+.++|.+|++...++.+.+..++++|+.+||++|+||.||+++++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 99999999999877666655556667777777888889999999988888888889999999999999999999999999
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
+|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 99999999999999999999999999999999999999999999999876678999999999999999999999999999
Q ss_pred EEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCc
Q 000523 403 IVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482 (1445)
Q Consensus 403 iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (1445)
++|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|++++.++++.+++..+.
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 495 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPF 495 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999998888888776678888899999999999999988888877776
Q ss_pred ccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHHH
Q 000523 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562 (1445)
Q Consensus 483 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~lf 562 (1445)
++...++.....++|..++++|+++|++|++++++||+..+++|+++.+++|+++|++|++++.+..+..++..+.|++|
T Consensus 496 ~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lf 575 (1470)
T PLN03140 496 DKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALL 575 (1470)
T ss_pred hhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Confidence 66555666666678999999999999999999999999999999999999999999999998776555566778899999
Q ss_pred HHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 000523 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYAL 642 (1445)
Q Consensus 563 f~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~~ 642 (1445)
|++++.+++++++++.++.++|||+|||+.+||++|+|++|+++.++|+.++++++|++|+|||+|+++++++||.++++
T Consensus 576 f~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~ 655 (1470)
T PLN03140 576 FSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLL 655 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCccc
Q 000523 643 LLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722 (1445)
Q Consensus 643 ~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~ 722 (1445)
+++++++++++|++++++++++.+|+.+++++++++++++||++++++||+||+|++|+||++|+++|+++|||.+.+|.
T Consensus 656 ~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~ 735 (1470)
T PLN03140 656 VFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWM 735 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cc-ccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCCcc
Q 000523 723 KF-TQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1445)
Q Consensus 723 ~~-~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1445)
+. +.+...+.|..+|+.+|+.....|+|++++++++|+++|+++++++|+|.++.......+..+..............
T Consensus 736 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1470)
T PLN03140 736 NKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPR 815 (1470)
T ss_pred CcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccc
Confidence 43 22335678999999999998889999999999999999999999999999876665554432211100000000000
Q ss_pred ccccCCCCC---Ccc--cccccc-c-hhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEE
Q 000523 802 QLSTLGGST---DDI--RGQQSS-S-QSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVL 874 (1445)
Q Consensus 802 ~~~~~~~~~---~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 874 (1445)
......... ... +..... . ..............++++.+|+.|..++|+|++|.++.+.+++..+...+++.+
T Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~i 895 (1470)
T PLN03140 816 SLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQL 895 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceE
Confidence 000000000 000 000000 0 000000000112234566778899999999999999988765544444556789
Q ss_pred eecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000523 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 954 (1445)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 954 (1445)
|+|||+.++|||++|||||||||||||||+|+|+.+++..+|+|.+||.+..+..+++.+|||+|+|.+++.+||+|+|.
T Consensus 896 L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~ 975 (1470)
T PLN03140 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLI 975 (1470)
T ss_pred eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHH
Confidence 99999999999999999999999999999999998777789999999988765556778999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000523 955 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034 (1445)
Q Consensus 955 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~ 1034 (1445)
|++.+|.+.+.+.+++++.++++++.++|.++.|+.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.++
T Consensus 976 ~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a 1055 (1470)
T PLN03140 976 YSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055 (1470)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 99988876666666777889999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCCchhhHHHHHHhCCCcccCCCCCCccceE
Q 000523 1035 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWM 1114 (1445)
Q Consensus 1035 ~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~ 1114 (1445)
..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|+++||+++||||||
T Consensus 1056 ~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~ 1135 (1470)
T PLN03140 1056 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWM 1135 (1470)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhh
Confidence 99999999999889999999999998899999999999988999999999999999999999998888899999999999
Q ss_pred EEeccchhhhhhcccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCCcHHHHHHHHHHHHHHHhhcChhHHHH
Q 000523 1115 LEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 1194 (1445)
Q Consensus 1115 l~v~~~~~~~~~~~d~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~ 1194 (1445)
||+++.+.+...+.||++.|++|++++++++.+++++.+.++.++..++++|++|+|+|++.|+||+++++||||.|+.+
T Consensus 1136 l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~ 1215 (1470)
T PLN03140 1136 LEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLV 1215 (1470)
T ss_pred hhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHH
Confidence 99998766666667999999999999999888888877766666666678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCHhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHH
Q 000523 1195 RFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQ 1274 (1445)
Q Consensus 1195 r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~ 1274 (1445)
|+++++++|+++|++||+++++..+.+|+++++|++|++++|+++.++++++|++..||+||+|||++|+|++.+|++|+
T Consensus 1216 r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~ 1295 (1470)
T PLN03140 1216 RFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQ 1295 (1470)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 99999999999999999999887778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Q 000523 1275 VMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGF 1354 (1445)
Q Consensus 1275 ~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~f~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf 1354 (1445)
+++|+|+.++++++|++|+|||+||++++++||||+++++++.++++++|+++++++||.++|+.++++++++|++|+||
T Consensus 1296 ~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf 1375 (1470)
T PLN03140 1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF 1375 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhhcccHHHHHHHHHHHHHhCCCcccccCCC----CcHHHHHHhhcCCccCchhHHHHHHHHHHHHHH
Q 000523 1355 IIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMDTG----ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFG 1430 (1445)
Q Consensus 1355 ~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~~~g----~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~ 1430 (1445)
++|+++||+||+|+||+||++|+++|+++|||+|.+.+|+++| .++++|++++|||+++++|++++++++|+++|+
T Consensus 1376 ~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~ 1455 (1470)
T PLN03140 1376 FIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFA 1455 (1470)
T ss_pred ccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999988776554 689999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCC
Q 000523 1431 FLFALGIKMFNFQRR 1445 (1445)
Q Consensus 1431 ~~~~~~l~~~~~~~r 1445 (1445)
+++++++|++|||||
T Consensus 1456 ~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1456 FIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHHHHhhcccC
Confidence 999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-186 Score=1878.44 Aligned_cols=1287 Identities=31% Similarity=0.529 Sum_probs=1061.8
Q ss_pred cchHHHHHHHHHHHhhcCCCCC--cceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecc
Q 000523 94 VDNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDV 171 (1445)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 171 (1445)
-|++++++.++++.++.+...| +++|+|+||+|++ ...+...+||+.|.+.+.+..+...+. ..+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4567777765555555555555 9999999999999 445666789999998887765443331 12344567899999
Q ss_pred eeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC-CceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCHHHHHH
Q 000523 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLA 248 (1445)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1445)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||+++++.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974211 24999999999875432 2456999999999999999999999
Q ss_pred HhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhh
Q 000523 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1445)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1445)
|+++++.+..+.... .+. +..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~~---~~~-----------------------~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDGV---SRE-----------------------EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCCC---CHH-----------------------HHHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 998776422110000 000 001123567899999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecC
Q 000523 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1445)
Q Consensus 329 rqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1445)
||||+||++|+.+|++++|||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999998875578999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCcccc---
Q 000523 409 RELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKS--- 485 (1445)
Q Consensus 409 ~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 485 (1445)
++++.+||+++||.||++.|+|||+.+++++.++ +++...+. ....++++++++|++++.++++.+++..+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987542 33222111 123578999999999987776666554321110
Q ss_pred ------------cccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccc
Q 000523 486 ------------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553 (1445)
Q Consensus 486 ------------~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~ 553 (1445)
...+.......|..++++|+++|++|+++.++||+..++.++++.+++|+++|++|++.+.+ ..+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN---TSD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---chh
Confidence 00011223346888999999999999999999999999999999999999999999976543 234
Q ss_pred cchhhHHHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCch
Q 000523 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNA 633 (1445)
Q Consensus 554 ~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 633 (1445)
.+.+.|++||++++.++.++.++..++.+|++|+|||..++|++++|++|+.+.++|+.++.+++|++|+|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 56778999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHH
Q 000523 634 GRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713 (1445)
Q Consensus 634 ~rff~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~ 713 (1445)
++||.+++++++...++++++++++++++++.+|+.+++++++++++++||+++.++||+||+|++|+||++|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccccc--c----------------------CCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 000523 714 NEFLGHSWKKFT--Q----------------------DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTL 769 (1445)
Q Consensus 714 nef~~~~~~~~~--~----------------------~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l 769 (1445)
|||.+..+.|.. | +.....|.++|+. ++.....|+|.+++++++|+++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887741 1 0123578899985 34445678999999999999999999999
Q ss_pred HHHhcCCCCCCCcceeccccccccccccCCccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccC--CCcee
Q 000523 770 ALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF--EPHSL 847 (1445)
Q Consensus 770 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 847 (1445)
++.|.++.......+............... ..+......++..... ......+.+... .....|. ....+
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~l 760 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGE--TSASNKNDIEAGEVLG-----STDLTDESDDVN-DEKDMEKESGEDIF 760 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhccc--ccccccccccccccCC-----CCcccccccccc-ccccccccCCCceE
Confidence 999988654433322211100000000000 0000000000000000 000000000000 0000011 12347
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC-eEEEEEEEcCccCC
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKK 926 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~ 926 (1445)
+|+|++|.++.+ .+++.+|+|||+.++|||++|||||||||||||||+|+|+.+++ +.+|+|.+||.+..
T Consensus 761 ~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 761 HWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831 (1394)
T ss_pred EEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 899999987532 12457999999999999999999999999999999999997644 45799999999875
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000523 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006 (1445)
Q Consensus 927 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1445)
. .+++.+|||+|+|.+++.+||+|+|.|++.+|.+.+.+.++++++++++++.++|.++.|+.+|.++ .+||||||||
T Consensus 832 ~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqR 909 (1394)
T TIGR00956 832 S-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKR 909 (1394)
T ss_pred h-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhH
Confidence 3 4678899999999999999999999999998876656666777889999999999999999998764 3899999999
Q ss_pred HHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCC
Q 000523 1007 LTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1007 l~iA~~L~~~p~-illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~ 1085 (1445)
|+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|+.+
T Consensus 910 l~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999999999997 9999999999999999999999999988899999999999977889999999999988999999999
Q ss_pred CchhhHHHHHHhCCCcccCCCCCCccceEEEeccchhhhhhcccHHHHHhhcHHHHHHHHHHHhhCCCCCCCC---CCCC
Q 000523 1086 RHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSK---DLYF 1162 (1445)
Q Consensus 1086 ~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~d~~~~~~~S~~~~~~~~~~~~~~~~~~~~~---~~~~ 1162 (1445)
++++++++||+++ |.++||+++|||||+||+++.+.+.....||++.|++|+++++..+.++++..+..... +...
T Consensus 990 ~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1394)
T TIGR00956 990 ENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDA 1068 (1394)
T ss_pred cccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccccc
Confidence 9999999999997 55679999999999999998654444456899999999998887766655443322111 1112
Q ss_pred CCccCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCHhhHHHHHhHHHHHHHHHHHHhh
Q 000523 1163 PTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYC 1242 (1445)
Q Consensus 1163 ~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~ 1242 (1445)
.++|+.|+|+|++.|++|+++++||||.|+.+|+++++++|+++|++||++++ +++++++++|++|+++++.++.+
T Consensus 1069 ~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~- 1144 (1394)
T TIGR00956 1069 LSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI- 1144 (1394)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-
Confidence 24689999999999999999999999999999999999999999999999986 57899999999999888877764
Q ss_pred hhcchhhhhhhhHH-HhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhhheecccCcccchhH-------HHHHHHHHH
Q 000523 1243 SSVQPIVSVERTVF-YREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAK-------FFWYIFFMY 1314 (1445)
Q Consensus 1243 ~~~~~~~~~er~v~-~rE~~~g~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~f~~~~~ 1314 (1445)
.+.+|.+..||.+| +|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.+ |++|+++++
T Consensus 1145 ~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~ 1224 (1394)
T TIGR00956 1145 QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLST 1224 (1394)
T ss_pred HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHH
Confidence 45567777788775 8999999999999999999999999999999999999999999988876 999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhcccHHHHHHHHHHHHHhCCCccccc
Q 000523 1315 FTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKM 1394 (1445)
Q Consensus 1315 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~ 1394 (1445)
++.++++++|+++++++||.++|+.+++++++++++||||++|+++||.||+|+||+||++|+++|++.|||+|.+..|.
T Consensus 1225 ~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~ 1304 (1394)
T TIGR00956 1225 MFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCK 1304 (1394)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887662
Q ss_pred C---------CCCcH--------------------------------HHHHHhhcCCccCchhHHHHHHHHHHHHHHHHH
Q 000523 1395 D---------TGETV--------------------------------KQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLF 1433 (1445)
Q Consensus 1395 ~---------~g~~~--------------------------------~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~ 1433 (1445)
. +|+|| .+|+. .+|+++++.|+|++++++|++++ +++
T Consensus 1305 ~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~~~w~~~~i~~~~~~~~-~~~ 1382 (1394)
T TIGR00956 1305 VKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYSGRWRNFGIFIAFIFFN-IIA 1382 (1394)
T ss_pred ccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCcccccccchhhhhHHHHHH-HHH
Confidence 1 23344 44544 57899999999999999999999 777
Q ss_pred HHHHHhh
Q 000523 1434 ALGIKMF 1440 (1445)
Q Consensus 1434 ~~~l~~~ 1440 (1445)
++++.++
T Consensus 1383 ~~~l~~~ 1389 (1394)
T TIGR00956 1383 TVFFYWL 1389 (1394)
T ss_pred HHhhheE
Confidence 7888775
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-95 Score=920.44 Aligned_cols=564 Identities=29% Similarity=0.502 Sum_probs=500.5
Q ss_pred ceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000523 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987643 3589999999987666677889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsg 1028 (1445)
+||+.|++.++.+.+...+++++.++++++.+||.+++|+.+|.++ .++|||||||||+||+||+++|+++||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999887766777778889999999999999999999764 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCCchhhHHHHHHhCCCcccCCCCC
Q 000523 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGY 1108 (1445)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~ 1108 (1445)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|+||. +++.+||+++| . +||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g-~-~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG-H-PCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC-C-CCCCCC
Confidence 999999999999999988899999999999988999999999998 5899999997 68999999995 3 699999
Q ss_pred CccceEEEeccchhhhh-----hcccHHHHHhhcHHHHHHHHHHHhhCCCCCC---CCCCCCCCccCCcHHHHHHHHHHH
Q 000523 1109 NPATWMLEVSAASQELA-----LGIDFTEHYKRSDLYRRNKALIEDLSRPPPG---SKDLYFPTQFSQSSWIQFVACLWK 1180 (1445)
Q Consensus 1109 npad~~l~v~~~~~~~~-----~~~d~~~~~~~S~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Q~~~l~~R 1180 (1445)
|||||++|+++...+.. ...++.+.|++|+.+++..+.......+.++ .......++|..+++.|+..|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 99999999987543211 1135677788887776655443322111111 111112346788999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCHhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhh
Q 000523 1181 QHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREK 1260 (1445)
Q Consensus 1181 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~ 1260 (1445)
+++++||||.+..+|+++++++|+++|++||++++ ++++++++.|++|++++++++.++..+.+.++.||.+|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999985 468899999999999999999888888899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000523 1261 AAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIV 1340 (1445)
Q Consensus 1261 ~~g~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~f~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1340 (1445)
.+|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.++++++|+++++++|+..+|+.+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCccchhhhhhcccHHHHHHHHHHHHHhCCCcc-cccCC---C---CcHHHHHHhhcCCccC
Q 000523 1341 STLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDD-KKMDT---G---ETVKQFLKDYFDFKHD 1413 (1445)
Q Consensus 1341 ~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~-~~~~~---g---~~~~~~~~~~~g~~~~ 1413 (1445)
+++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. +|..+ + .++ +++.+.||++.+
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~~ 585 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999998775 45311 1 134 566678999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000523 1414 FLGVVAAVLVVFAVLFGFLFALGIKMFNFQRR 1445 (1445)
Q Consensus 1414 ~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1445 (1445)
+.|.+++++++|+++|+++++++|++....+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999998766655
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-95 Score=909.72 Aligned_cols=576 Identities=32% Similarity=0.577 Sum_probs=505.3
Q ss_pred CCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC-eEEEEEEEc
Q 000523 843 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 921 (1445)
Q Consensus 843 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~ 921 (1445)
.+..+.|+|+++....+.. ..+++|+||||.++|||++|||||||||||||||+|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3557899999988764321 3468999999999999999999999999999999999998764 789999999
Q ss_pred CccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 922 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 922 g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
|++.+.+.+++.+|||+|+|.+.|++||+|+|.|+|.+|++.+.+.++++++|+++++.+||.+++|+++|+++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999988899999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
||||||+||.+|+.||+||||||||||||+.++..++++|+++|++|+|||||+|||+.+++++||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 699999
Q ss_pred cCCCCchhhHHHHHHhCCCcccCCCCCCccceEEEeccch-hhhhhcccHHHH------HhhcHHHHHHH-HHHHhhCCC
Q 000523 1082 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAAS-QELALGIDFTEH------YKRSDLYRRNK-ALIEDLSRP 1153 (1445)
Q Consensus 1082 G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~-~~~~~~~d~~~~------~~~S~~~~~~~-~~~~~~~~~ 1153 (1445)
|+. +++.+||+++| . +||+++|||||++|+.+.. ..... .+..+. ++..+...+.. ...+.+...
T Consensus 253 G~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS 325 (613)
T ss_pred cCH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhcccc
Confidence 997 68999999995 4 5999999999999998842 11000 011111 11011111111 001111111
Q ss_pred CCCCCCCCCCCccCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCHhhHHHHHhHHHHH
Q 000523 1154 PPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTA 1233 (1445)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~ 1233 (1445)
+ ..+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.
T Consensus 326 ----~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 326 ----K--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFI 396 (613)
T ss_pred ----c--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHH
Confidence 1 1111127899999999999999999999999999999999999999999999975 456777999999999
Q ss_pred HHHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhhheecccCcccchhHHHHHHHHH
Q 000523 1234 VLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFM 1313 (1445)
Q Consensus 1234 ~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~f~~~~ 1313 (1445)
+.+..+..+...++.++.||++|.||+.+|+|+.++|++|+.++++|+.++.+++|.+|+|||+|++++..+|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhcccHHHHHHHHHHHHHhCCCcccc
Q 000523 1314 YFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKK 1393 (1445)
Q Consensus 1314 ~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~ 1393 (1445)
++..+.++++|++++++.||...|..++++++..+++|+||+++.++||.||+|++|+|+++|++||++.|||++....|
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~ 556 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRC 556 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998733333
Q ss_pred c-----CCCCcHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000523 1394 M-----DTGETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNFQR 1444 (1445)
Q Consensus 1394 ~-----~~g~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1444 (1445)
. +...++.++++ +++++.++.|.++.+++++.++|++++++++++.-..+
T Consensus 557 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 557 FLSGNLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred ccCcCCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 12345666665 58999999999999999999999999999999765443
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-94 Score=913.85 Aligned_cols=582 Identities=24% Similarity=0.410 Sum_probs=485.4
Q ss_pred CCceeEEecceeeeecchhhh--------------hcc--ccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHh
Q 000523 843 EPHSLTFDEVVYSVDMPEEMK--------------VQG--VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 843 ~~~~l~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~ 906 (1445)
.+..+.|.+++|++....... ..+ ...+++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 357899999999986542100 000 1123467999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000523 907 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986 (1445)
Q Consensus 907 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 986 (1445)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999886532 345689999999999999999999999887765555566667789999999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhh
Q 000523 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1066 (1445)
Q Consensus 987 ~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~f 1066 (1445)
.|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999997799999
Q ss_pred ceEeEEecCcEEEEEcCCCCchhhHHHHHHhCCCcccCCCCCCccceEEEeccchhhh------h---hcccHHHHHhhc
Q 000523 1067 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQEL------A---LGIDFTEHYKRS 1137 (1445)
Q Consensus 1067 D~v~~l~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~~~npad~~l~v~~~~~~~------~---~~~d~~~~~~~S 1137 (1445)
|++++|++ |+++|.|+. +++++||+++| . +||+++|||||++|+++...+. . ...+..+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999997 68999999995 3 6999999999999998753210 0 001233455432
Q ss_pred HHHHHHHHHHHh--hCC-CCC-----CCCCCC-CCCccCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 000523 1138 DLYRRNKALIED--LSR-PPP-----GSKDLY-FPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGS 1208 (1445)
Q Consensus 1138 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1208 (1445)
. .+...+.++. ... +.+ ..+... ..+.+..+||+|+++|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 111 000 000000 11235578999999999999988 99999999999999999999999
Q ss_pred hhccCCCCCCCHhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhh
Q 000523 1209 LFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVV 1288 (1445)
Q Consensus 1209 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~eiP~~~~~~~~ 1288 (1445)
+||+++ ..+++++.|++|+++++.++.+++++++.++.||+||+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 467999999999999999988888888999999999999999999999999999999999999999999
Q ss_pred hhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 000523 1289 YGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWY 1368 (1445)
Q Consensus 1289 ~~~i~Y~~~g~~~~~~~f~~f~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~ 1368 (1445)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|+.++++++.++++||||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hcccHHHHHHHHHHHHHhCCCcc-----cccCC-C--CcHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000523 1369 YWANPIAWTLYGLVASQFGDMDD-----KKMDT-G--ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMF 1440 (1445)
Q Consensus 1369 ~~~sp~~y~~~~l~~~~~~~~~~-----~~~~~-g--~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1440 (1445)
+|+||++|++++++.|||++.+. +|+.+ + .....++. ..++++...|.++++|++|+++|+++++++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987543 34311 0 01112222 2344455689999999999999999999999988
Q ss_pred cc
Q 000523 1441 NF 1442 (1445)
Q Consensus 1441 ~~ 1442 (1445)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 76
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-92 Score=954.73 Aligned_cols=562 Identities=25% Similarity=0.414 Sum_probs=496.4
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC--CeEEEEEEEcCccCCc--ccccceEEEeccCCCCCC
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ--ETFARISGYCEQNDIHSP 945 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~ 945 (1445)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+..+ ..+++.++|++|+|.|++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999998632 2468999999987643 234567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCC----CCCHHHHHH-HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEE
Q 000523 946 FVTIYESLLFSAWLRLSP----EVDSETRKM-FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020 (1445)
Q Consensus 946 ~lTv~E~l~f~~~lr~~~----~~~~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~il 1020 (1445)
.+||+|+|.|++.++.+. ..+.+++++ .++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998887643 223344333 357789999999999999999888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCCchhhHHHHHHhCC
Q 000523 1021 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIP 1099 (1445)
Q Consensus 1021 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~~~~~~~~yF~~~~ 1099 (1445)
||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+||. +++++||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999874 999999999998889999999999986 799999997 68999999995
Q ss_pred CcccCCCCCCccceEEEeccchhhh----------hhcccHHHHHhhcHHHHHHHHHHHhhCCCC---------------
Q 000523 1100 GVQKIKDGYNPATWMLEVSAASQEL----------ALGIDFTEHYKRSDLYRRNKALIEDLSRPP--------------- 1154 (1445)
Q Consensus 1100 g~~~~~~~~npad~~l~v~~~~~~~----------~~~~d~~~~~~~S~~~~~~~~~~~~~~~~~--------------- 1154 (1445)
. +||+++|||||++|+++++... ....||++.|++|+.+++..+.+++.....
T Consensus 307 -~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 -F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred -C-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 4 6999999999999998864311 123479999999999887766554322110
Q ss_pred CCCCCCCCCCccCCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCHhhHHHHHhHHHHHH
Q 000523 1155 PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAV 1234 (1445)
Q Consensus 1155 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1234 (1445)
..++.....+.|..|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011122334688999999999999999999999999999999999999999999999985 4678999999999999
Q ss_pred HHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhhheecccCcccchhHHHHHHHHHH
Q 000523 1235 LFLGVQYCSSVQPIVSVERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMY 1314 (1445)
Q Consensus 1235 ~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~f~~~~~ 1314 (1445)
++.++.++..+ +.+..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887776 44557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhcccHHHHHHHHHHHHHhCCCccccc
Q 000523 1315 FTLLFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKM 1394 (1445)
Q Consensus 1315 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~ 1394 (1445)
++.++++++|+++++++||..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|++.|||++.+.+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887663
Q ss_pred ------------------C------CC---CcHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000523 1395 ------------------D------TG---ETVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1442 (1445)
Q Consensus 1395 ------------------~------~g---~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1442 (1445)
| +| .++.+|+...|||+++++|+|++|+++|+++|++++++++++++.
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 11 256799988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-91 Score=937.84 Aligned_cols=592 Identities=24% Similarity=0.402 Sum_probs=501.0
Q ss_pred cCCCceeEEecceeeeec-------chhh----------h-hcc---ccCCceEEeecceEEeeCCcEEEEEcCCCCChH
Q 000523 841 PFEPHSLTFDEVVYSVDM-------PEEM----------K-VQG---VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899 (1445)
Q Consensus 841 ~~~~~~l~~~~~~~~~~~-------~~~~----------~-~~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKS 899 (1445)
+.+...+.|+|+++..+. |.-. . ..+ ..+.++.+|+|||+.|+|||+++|+||||||||
T Consensus 126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 334567899999887652 1100 0 001 122356799999999999999999999999999
Q ss_pred HHHHhHhCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHH-
Q 000523 900 TLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETR- 970 (1445)
Q Consensus 900 TLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~-------~~~~~~- 970 (1445)
||||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.|++.+||+|+|.|++.++.... ...+++
T Consensus 206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~ 285 (1470)
T PLN03140 206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD 285 (1470)
T ss_pred HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence 9999999987532 3589999999987554446789999999999999999999999988764211 111111
Q ss_pred -----------------------HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000523 971 -----------------------KMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1445)
Q Consensus 971 -----------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTs 1027 (1445)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+++||||||+
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs 365 (1470)
T PLN03140 286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365 (1470)
T ss_pred ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence 123578999999999999999998899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCCchhhHHHHHHhCCCcccCCC
Q 000523 1028 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKD 1106 (1445)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~~~~~ 1106 (1445)
|||+.++..+++.|+++++ .|+|||+++|||+.+++++||++++|++ |+++|+||. +++++||+++| . +||+
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG-f-~cP~ 438 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG-F-KCPE 438 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC-C-CCCC
Confidence 9999999999999999986 5899999999998899999999999985 899999997 68999999995 4 6999
Q ss_pred CCCccceEEEeccchhh-h-----------hhcccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCCcHHHHH
Q 000523 1107 GYNPATWMLEVSAASQE-L-----------ALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQF 1174 (1445)
Q Consensus 1107 ~~npad~~l~v~~~~~~-~-----------~~~~d~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ 1174 (1445)
++|||||++|+++.... . ....+|++.|++|+.+++..+.++.-.......+.....++|..++|.|+
T Consensus 439 ~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~ 518 (1470)
T PLN03140 439 RKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELL 518 (1470)
T ss_pred CCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHH
Confidence 99999999999986432 1 11246899999999887765443321100011111112346889999999
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCHhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhh
Q 000523 1175 VACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERT 1254 (1445)
Q Consensus 1175 ~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~ 1254 (1445)
+.|++|+++..||||.++..|+++.+++|+++|++||+++.+..+..+.+...|++||++++..++++..+ +.+..||+
T Consensus 519 ~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~ 597 (1470)
T PLN03140 519 KACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLP 597 (1470)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccc
Confidence 99999999999999999999999999999999999999986654555677889999999998888776554 66778999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 000523 1255 VFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVALTPNH 1334 (1445)
Q Consensus 1255 v~~rE~~~g~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~f~~~~~~~~~~~~~~g~~~~~~~p~~ 1334 (1445)
||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+.
T Consensus 598 vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~ 677 (1470)
T PLN03140 598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677 (1470)
T ss_pred hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhcccHHHHHHHHHHHHHhCCCccc-ccCCC---CcHHHHHHhhcCC
Q 000523 1335 HIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDK-KMDTG---ETVKQFLKDYFDF 1410 (1445)
Q Consensus 1335 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~-~~~~g---~~~~~~~~~~~g~ 1410 (1445)
.+|+.++++++.++++|+||+||+++||+||+|++|+||++|+++|+++|||.+.... +.+++ .++.+|+ +.|||
T Consensus 678 ~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~ 756 (1470)
T PLN03140 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDV 756 (1470)
T ss_pred HHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCc
Confidence 9999999999999999999999999999999999999999999999999999776543 11122 2455666 78999
Q ss_pred ccC--chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000523 1411 KHD--FLGVVAAVLVVFAVLFGFLFALGIKMFN 1441 (1445)
Q Consensus 1411 ~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1441 (1445)
+.+ +.|+++++|++|+++|++++++++++++
T Consensus 757 ~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 757 FTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 754 5699999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-86 Score=829.59 Aligned_cols=563 Identities=26% Similarity=0.465 Sum_probs=502.8
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 948 (1445)
.+.++|+|+|+.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.++..-++.++|++|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999975432 235799999999876545788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000523 949 IYESLLFSAWLRLSPE----VDSETRK-MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1445)
Q Consensus 949 v~E~l~f~~~lr~~~~----~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLD 1023 (1445)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++|+|++||+...+|+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2578999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCCchhhHHHHHHhCCCcc
Q 000523 1024 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQ 1102 (1445)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~~~~~~~~yF~~~~g~~ 1102 (1445)
|+|+|||+.++.++.+.||++++ .+.|+++++|||+.+++++||+|++|.+ |++||+||. +++++||+++| .
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G-f- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG-F- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC-c-
Confidence 99999999999999999999986 4889999999999999999999999996 899999998 68999999995 3
Q ss_pred cCCCCCCccceEEEeccchhhh-----------hhc-ccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCCcH
Q 000523 1103 KIKDGYNPATWMLEVSAASQEL-----------ALG-IDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSS 1170 (1445)
Q Consensus 1103 ~~~~~~npad~~l~v~~~~~~~-----------~~~-~d~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1445)
+||+..++|||+.+|++...+. ... .||++.|.+|+.+++....++.-......++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999999832211 111 4799999999999887654432211122333344456899999
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCCCCHhhHHHHHhHHHHHHHHHHHHhhhhcchhhh
Q 000523 1171 WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVS 1250 (1445)
Q Consensus 1171 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1250 (1445)
|.|++.|+.|.++.+.||..|...++++.+++|+++|++|++... ++..+.+.+.|++||++++..++++..+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999982 5677899999999999999999888887 4456
Q ss_pred hhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000523 1251 VERTVFYREKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTLLFFTFYGMMAVAL 1330 (1445)
Q Consensus 1251 ~er~v~~rE~~~g~Y~~~~y~~a~~l~eiP~~~~~~~~~~~i~Y~~~g~~~~~~~f~~f~~~~~~~~~~~~~~g~~~~~~ 1330 (1445)
+.|+||+|||...+|+++||.++..+.++|+.++.+++|.+|+||++||.+++++||.|+++++++..|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhcccHHHHHHHHHHHHHhCCCcccccC---------------
Q 000523 1331 TPNHHIAAIVSTLFYGLWNVFSGFIIPRPRIPIWWRWYYWANPIAWTLYGLVASQFGDMDDKKMD--------------- 1395 (1445)
Q Consensus 1331 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~~--------------- 1395 (1445)
+|+..+|+.++++.+....+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|.+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888751
Q ss_pred ------CCC---cHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000523 1396 ------TGE---TVKQFLKDYFDFKHDFLGVVAAVLVVFAVLFGFLFALGIKMFNF 1442 (1445)
Q Consensus 1396 ------~g~---~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1442 (1445)
.|. .+.+|++..|+|++.|.|++++|++||.++|.+++.+++.|+|.
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p 731 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKP 731 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCc
Confidence 121 34678889999999999999999999999999999999999985
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=769.52 Aligned_cols=583 Identities=30% Similarity=0.497 Sum_probs=491.3
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHH
Q 000523 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1445)
Q Consensus 114 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1445)
...++++|+|++++.... .+ ..+++|+||||+++|||++||+||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 356889999999997541 11 4567999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHc
Q 000523 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1445)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1445)
||++|+|+.++..+.+|+|++||++.+....++.+|||.|+|.+++++||+|++.|+++++-+.. .
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~------- 137 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------L------- 137 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------C-------
Confidence 99999999987667899999999887766678899999999999999999999999998875421 0
Q ss_pred CCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCC
Q 000523 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1445)
Q Consensus 274 ~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsg 353 (1445)
..++.+.++|++++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 138 -----------------~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 138 -----------------SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -----------------CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 112345679999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHH
Q 000523 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1445)
Q Consensus 354 LD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl 433 (1445)
||+.++.++++.|+++|+. ++|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||+..||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999985 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCch--hhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCcccccccccccccccccCcHHHHHHHHHHH
Q 000523 434 QEVTSRK--DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISR 511 (1445)
Q Consensus 434 ~ev~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R 511 (1445)
.++.+.. .+..... ....+..+.++..+...+.......... + ..........++|.|+..+.+|
T Consensus 280 l~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEKSLS----T-SKKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhhhcc----c-ccccccccCCcHHHHHHHHHHH
Confidence 9987742 1110000 0000011111100000000000000000 0 0000111167899999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHHHHHHHHHHHhHHH-HHHHHhhhchhHHHhh
Q 000523 512 ELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQR 590 (1445)
Q Consensus 512 ~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~l~~~~~~~~vf~kqr 590 (1445)
.+..+.|++..+..|.++.+++++++|++|++.+.... ......|++|+.+.+..+..+. .++.+..++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999998754332 2335678888888888666555 6889999999999999
Q ss_pred hcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 000523 591 DFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTF 670 (1445)
Q Consensus 591 ~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~ 670 (1445)
..++|+.++|++++.+.++|+.++.+++|.+++|||+|++++..+|+.+.++.++..+++.+++.++++..++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCccccccc--CCccccHHHHHhhcCccccchh
Q 000523 671 GSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYW 748 (1445)
Q Consensus 671 ~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~--~~~~~~G~~~L~~~g~~~~~~~ 748 (1445)
++++++.+++++||+++.++||.||+|+.|+|+++|++++++.|+|.+....|... ..+...|.++++..++.. ..
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFED--SS 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcc--cc
Confidence 99999999999999999999999999999999999999999999999744444332 345677889999888754 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000523 749 YWLGLGALFGFVLLLNFAYTLALTFLD 775 (1445)
Q Consensus 749 ~w~~~g~l~~~~~~~~~~~~l~L~~l~ 775 (1445)
.|.++.++++++++|.++.+++|++..
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999998754
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=769.50 Aligned_cols=609 Identities=21% Similarity=0.325 Sum_probs=470.6
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHH
Q 000523 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1445)
Q Consensus 114 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1445)
.++++++|.|+++.+.......+...+ ...+..-. .......+..++++|+|+|++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNI----KRILGHKP-KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCccccccc----cccccccc-ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 457999999999997532101111100 00000000 0000111223467999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHc
Q 000523 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1445)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1445)
||++|+|+++|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++..... .
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~------ 174 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------T------ 174 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------C------
Confidence 999999999874 3589999999987532 235699999999999999999999998765421100 0
Q ss_pred CCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCC
Q 000523 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1445)
Q Consensus 274 ~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsg 353 (1445)
.++...+++++++.+||++++||.||++..++|||||||||+||++|+.+|++|+|||||+|
T Consensus 175 ------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 175 ------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 01122356789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHH
Q 000523 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1445)
Q Consensus 354 LD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl 433 (1445)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999875 5788888888888789999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC---Cccccc-----cccc-ccccccccCcHHHH
Q 000523 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT---PFDKSK-----SHRA-ALTTETYGVGKREL 504 (1445)
Q Consensus 434 ~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~~-~l~~~~~~~~~~~~ 504 (1445)
.++++...+.......+.+ ...+++.+.|++... ++..++... ...... ..+. ......+..+++.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998754321100000011 112334444432111 111111100 000000 0000 00112245679999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHHHHHHHHHHH-hHHHHHHHHhhhc
Q 000523 505 LKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKL 583 (1445)
Q Consensus 505 ~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~l~~~~~~~ 583 (1445)
+..+++|.++. +|+......|+++.+++|+++|++|++.+ ..+.+.+.|++||.+++.++ ..++.++.+..++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78887788999999999999999999653 23456678999999877555 5567888889999
Q ss_pred hhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 000523 584 PVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663 (1445)
Q Consensus 584 ~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~~~~~~~~~~~~l~~~ia~~~~~ 663 (1445)
++|+|||..++|++++|++|+++.++|+.++.+++|++|+|||+|+++++++||.+++++++...++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCcc-----cccccCCccccHHHHHh
Q 000523 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-----KKFTQDSSETLGVQVLK 738 (1445)
Q Consensus 664 ~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~-----~~~~~~~~~~~G~~~L~ 738 (1445)
+.+|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+.+. .|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 79999999999999999999999999976542 34221110111112222
Q ss_pred hcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000523 739 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (1445)
Q Consensus 739 ~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~ 775 (1445)
...+. ....|.+++++++++++|+++.+++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 234788999999999999999999997653
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-79 Score=773.08 Aligned_cols=569 Identities=25% Similarity=0.416 Sum_probs=481.1
Q ss_pred cccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCC
Q 000523 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1445)
+.++++|+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34567999999999999999999999999999999999998875456899999999876544567899999999999999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccc-
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM- 320 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (1445)
||+|||.|+++++.+.... .++...+++++++.+||++++||.||+++
T Consensus 115 TV~e~l~f~~~~~~~~~~~-------------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVT-------------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCC-------------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 9999999998775321100 01123457889999999999999999864
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
.++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .+.|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 689999999999999999999999999999999999999999999999875 5789999999999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000523 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480 (1445)
Q Consensus 401 G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1445)
|+++|+|+++++.+||+++||+||+..|++||+.++.+.....+. . .....+++.+.|++++..++..++...
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998764322110 0 112234566667666555444333221
Q ss_pred Cccccc---ccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchh
Q 000523 481 PFDKSK---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (1445)
Q Consensus 481 ~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~ 557 (1445)
...... ..........+..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111000 00001122356788999999999999999999999999999999999999999999765432 344556
Q ss_pred hHHHHHHHHHHHHhHH-HHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHH
Q 000523 558 AGATFFAITMVNFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRF 636 (1445)
Q Consensus 558 ~g~lff~~~~~~~~~~-~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf 636 (1445)
.|++|+.++...+.++ ..+..+..++++|+|||..++|++++|++++.+.++|+.++.+++|.+++|||+|+++++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 7889999888777754 556777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHh
Q 000523 637 FKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716 (1445)
Q Consensus 637 f~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef 716 (1445)
|.+++++++...++.+++.++++++++..+|..+++++++++++++||+++.++||+||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccccCC---ccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000523 717 LGHSW-KKFTQDS---SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (1445)
Q Consensus 717 ~~~~~-~~~~~~~---~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l 774 (1445)
.+..+ .|...+. +...|..+|+.+|+..+ +.|.++++++++.++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 4432111 23458999999988654 458999999999999999999999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-76 Score=740.41 Aligned_cols=836 Identities=22% Similarity=0.264 Sum_probs=454.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHH-hhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRI-DRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1445)
...++....+++++++..+. +...- ...-..-.+.+|+|+||++++.
T Consensus 314 f~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYP--------------------------- 361 (1228)
T KOG0055|consen 314 FAKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYP--------------------------- 361 (1228)
T ss_pred HhccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCC---------------------------
Confidence 56778888899998887766 32221 1112233578999999999973
Q ss_pred hcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 000523 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1445)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 233 (1445)
++ ++..||+|+|+.|++|+.++|+|||||||||++++|.+.++|+ +|+|++||++++++.. +.++|.|+|
T Consensus 362 ---sR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 362 ---SR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQ 434 (1228)
T ss_pred ---CC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeee
Confidence 22 3456999999999999999999999999999999999999999 9999999999988765 478999999
Q ss_pred CCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
+|.+ +..||+||+.|+. ++...+...++++... ..--+..|++..|
T Consensus 435 ePvl-F~~tI~eNI~~G~----~dat~~~i~~a~k~an-----------------------------a~~fi~~lp~g~~ 480 (1228)
T KOG0055|consen 435 EPVL-FATTIRENIRYGK----PDATREEIEEAAKAAN-----------------------------AHDFILKLPDGYD 480 (1228)
T ss_pred chhh-hcccHHHHHhcCC----CcccHHHHHHHHHHcc-----------------------------HHHHHHhhHHhhc
Confidence 9855 5579999999974 1222233333333221 1122456889999
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
|.||++++. ||||||||++|||||+.+|+|||||||||+||+.++..+.+.|++.. .++|+|+. .|. -++.+.+|
T Consensus 481 T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivV-aHR-LStIrnaD 555 (1228)
T KOG0055|consen 481 TLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVV-AHR-LSTIRNAD 555 (1228)
T ss_pred ccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEE-eee-hhhhhccC
Confidence 999998885 99999999999999999999999999999999999999999999864 45566663 344 44555599
Q ss_pred eEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHH--HhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhch--
Q 000523 394 DIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL--QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFH-- 469 (1445)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl--~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 469 (1445)
+|++|++|+|++.|+|+|+++. ..-.++.. |+..+..+. ..+ +.. ..++.....+.+.
T Consensus 556 ~I~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~---~~~----~~~~~~~s~~~s~~~ 617 (1228)
T KOG0055|consen 556 KIAVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEE---EES----LKEERSRSLKSSSSS 617 (1228)
T ss_pred EEEEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-ccc---ccc----hhhhhhhcccccccc
Confidence 9999999999999999999862 11112221 222221110 000 000 0000000000000
Q ss_pred --hhhh-hHHhh--cCCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-------HHHHH
Q 000523 470 --VGQK-ISDEL--RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAF-------VAVVY 537 (1445)
Q Consensus 470 --~~~~-~~~~l--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i-------~ali~ 537 (1445)
..+. ..... ..+.++....+. .......+.+ |-+...+.++.+.+.-.+..++ .+.++
T Consensus 618 ~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~s~~--------~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~ 687 (1228)
T KOG0055|consen 618 PSLSRGSNRSNLLSVKPEGEDPEEPV--SEEDEKVSFW--------RIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVF 687 (1228)
T ss_pred ccccCCcccccccccccccccccccc--ccccccccHH--------HHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 0000 00000 000000000000 0011122333 3333333333333333332222 23333
Q ss_pred HHHHhcccC-CCccccccchhhHHHHHHHHHHHHhH--HHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHH
Q 000523 538 MTLFLRTKM-HKDTVTDGGIFAGATFFAITMVNFNG--FSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 614 (1445)
Q Consensus 538 gt~f~~~~~-~~~~~~~~~~~~g~lff~~~~~~~~~--~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~ 614 (1445)
+.++--... +.+..........++|.++....+.. +......+..-. +..++
T Consensus 688 s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~--------------------Lt~R~----- 742 (1228)
T KOG0055|consen 688 SQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEK--------------------LTKRL----- 742 (1228)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHH-----
Confidence 332211111 11111111111223333222211110 000000000000 00000
Q ss_pred HHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH------HHH
Q 000523 615 EVAVWVFLSYYVVGYDSN---AGRFFKQYALLLG-----VNQMASALFRFIAVTGRNMVVANTFGSFALLV------LLS 680 (1445)
Q Consensus 615 ~~~i~~~i~Y~~~g~~~~---~~rff~~~~~~~~-----~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~------~~l 680 (1445)
-...|..+.+.-+++-.+ .++...++..... +..-.+.+...++++.-.+.+|..+++-+.++ ++.
T Consensus 743 R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~ 822 (1228)
T KOG0055|consen 743 RSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLI 822 (1228)
T ss_pred HHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222222222111 1333333221111 11112222333334444444454444433222 222
Q ss_pred HhhcccCccchhHHHHHHHHHcH---HHHHHHHHHHHHhcCCcccccccCCccccHHHHHhhcCc-----c--ccchhHH
Q 000523 681 LGGFILSREDIKKWWKWAYWCSP---LTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGF-----F--AHEYWYW 750 (1445)
Q Consensus 681 ~~Gf~i~~~~ip~~~~W~~~isP---~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~-----~--~~~~~~w 750 (1445)
++++.-. +++.-.+. -.|.-.+.+++|-..+-.... .......+++.+.- . ......|
T Consensus 823 ~~~~~~~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~----al~~e~~~~~~y~~~l~~p~~~~~~~~~i 890 (1228)
T KOG0055|consen 823 LSGYLQK--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTVA----ALCAEEKFMELYKEELEKPRKSSFKRGLI 890 (1228)
T ss_pred HHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222110 00000000 001111111111111000000 00000111110000 0 0001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCCccccccCCCCCCccccccccchhhhhhhhh-
Q 000523 751 LGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAE- 829 (1445)
Q Consensus 751 ~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 829 (1445)
.+++.-+...+ ..+.++++++|...+..............-..-..+............+-.+...+........+..
T Consensus 891 ~gl~f~~sqs~-~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~ 969 (1228)
T KOG0055|consen 891 SGLGFGFSQSL-LFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP 969 (1228)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC
Confidence 33322222211 1233444444432221111111000000000000000000000000000000000000000000000
Q ss_pred -cCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCC
Q 000523 830 -ASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 830 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~ 908 (1445)
.+.....+...|.-...++++||++.|+.. ++.++|+|+|++|++|+.+||+|||||||||.+.+|-+.
T Consensus 970 ~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf 1039 (1228)
T KOG0055|consen 970 TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERF 1039 (1228)
T ss_pred CCCCCCCCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 011111222334445679999999999754 346799999999999999999999999999999999976
Q ss_pred CCCCeEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc----
Q 000523 909 KTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV---- 981 (1445)
Q Consensus 909 ~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l---- 981 (1445)
.+ +..|.|.|||.+++. ..+|+++|.|.|+|.+|. -|++||+.|+. .+++.++ +.++++.-
T Consensus 1040 Yd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~e----Ii~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1040 YD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEE----IIEAAKLANAHN 1107 (1228)
T ss_pred cC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHH----HHHHHHHhhhHH
Confidence 65 568999999998765 457889999999999986 69999999981 1234333 33333332
Q ss_pred ---CCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Q 000523 982 ---ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058 (1445)
Q Consensus 982 ---~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp 1058 (1445)
+|.+-.||.+|..|. .||||||||++||||+++||+||+|||.||.||+++.+.|+++|.+.. .|+|.|+++|++
T Consensus 1108 FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRL 1185 (1228)
T ss_pred HHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecch
Confidence 455667899998764 799999999999999999999999999999999999999999999874 589999999998
Q ss_pred cHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1059 SIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1059 s~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
| ....+|.+.++++ |+++..|.-
T Consensus 1186 S--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1186 S--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred h--hhhcCCEEEEEEC-CEEEecccH
Confidence 7 4678999999985 899999974
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=719.23 Aligned_cols=814 Identities=20% Similarity=0.259 Sum_probs=457.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.-++..+++|+-+.+..+... .+...+.+.+.+...+.++|.+++=+.
T Consensus 483 ~vqa~VS~~Ri~~fl~~~e~~-----~~~~~~~~~~~~~~~i~i~~~sfsW~~--------------------------- 530 (1381)
T KOG0054|consen 483 LVQAKVSLKRLKEFLLSEELD-----PDSVERSPDEAGENAIEIKNGSFSWDS--------------------------- 530 (1381)
T ss_pred HHHHHHHHHHHHHHhcCcccC-----ccccccCCCCCCCceEEEeeeeEecCC---------------------------
Confidence 346788889988888765431 111122344455667888888877432
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~ 237 (1445)
....+.|+|||++|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .++||+|++ |
T Consensus 531 ----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~p-W 592 (1381)
T KOG0054|consen 531 ----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQP-W 592 (1381)
T ss_pred ----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEecccc-H
Confidence 11223899999999999999999999999999999999999976 99999998 499999987 5
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
+.+.||||||.|+..+. .++|+.+.++|..+++.++.|++| .|.||
T Consensus 593 I~ngTvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIG 638 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIG 638 (1381)
T ss_pred hhCCcHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceec
Confidence 66679999999998764 478999999999999988888887 49999
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~-~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
++++ +||||||||+++|||++++++|++||+|.|++|+++..+|++ +++.+. +++|+|+ ++| ..+....+|.|+
T Consensus 639 ErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~IL-VTH-ql~~L~~ad~Ii 713 (1381)
T KOG0054|consen 639 ERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVIL-VTH-QLQFLPHADQII 713 (1381)
T ss_pred CCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEE-EeC-chhhhhhCCEEE
Confidence 9998 599999999999999999999999999999999999999995 775542 3455555 444 567888999999
Q ss_pred EecCCeEEEecChhHHHH---HHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhh
Q 000523 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK 473 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1445)
+|++|+|+..|+++|+.+ .|+++ . .+... ++... .....+.......+. +. +.......
T Consensus 714 vl~~G~I~~~Gty~el~~~~~~~~~l-~------------~~~~~--~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~ 775 (1381)
T KOG0054|consen 714 VLKDGKIVESGTYEELLKSGGDFAEL-A------------HEEES--EQEEE-ASEKDLESGESSRES-ES-RSLESLSS 775 (1381)
T ss_pred EecCCeEecccCHHHHHhcchhHHHH-h------------hccch--hhccc-cccccccccccccch-hh-hhhhhhcc
Confidence 999999999999999984 23322 0 00000 00000 000000000000000 00 00000000
Q ss_pred hHHhhcCCccccccccccccc---ccccCcHHHHHHHHHHHHHHHhhcchHHHHH--HHHHHHH-HHHHHHHHHhcccCC
Q 000523 474 ISDELRTPFDKSKSHRAALTT---ETYGVGKRELLKANISRELLLMKRNSFVYIF--KLIQIAF-VAVVYMTLFLRTKMH 547 (1445)
Q Consensus 474 ~~~~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~--~~~~~~i-~ali~gt~f~~~~~~ 547 (1445)
..++ ....+.. +..... ...+.-.|.-. ..+.... ..+.... -+..... +..+....|+..+.+
T Consensus 776 ~~~~--~~~~~~~--~~~~~~~ee~~~G~v~~~vY-----~~Y~~a~-~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~ 845 (1381)
T KOG0054|consen 776 EEEK--SKDEKEE--EDKLVQEEERETGKVSWSVY-----KKYIKAA-GGFLLVLLILLLFVLTQVLQIASNYWLSYWTD 845 (1381)
T ss_pred cccc--cccccch--hhHHHHHHHHhcCEeeHHHH-----HHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000 0000000 000000 00000011100 1111110 1111111 1111111 122223334333322
Q ss_pred Ccc---c--cccchhhH----HHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHH
Q 000523 548 KDT---V--TDGGIFAG----ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAV 618 (1445)
Q Consensus 548 ~~~---~--~~~~~~~g----~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i 618 (1445)
... . .+...+.+ ..+...++.++.++......+.....++. .+-+.+++.|++|+++
T Consensus 846 ~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~------------~ml~~Ilrapm~FFdt-- 911 (1381)
T KOG0054|consen 846 DGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHD------------KLLNSILRAPMSFFDT-- 911 (1381)
T ss_pred CcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhCcchhcCC--
Confidence 211 0 11222221 11111122222222222222211111111 1345677888888764
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHH-----HHHHHHHH-HHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchh
Q 000523 619 WVFLSYYVVGYDSNAGRFFKQYALLLGVN-----QMASALFR-FIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIK 692 (1445)
Q Consensus 619 ~~~i~Y~~~g~~~~~~rff~~~~~~~~~~-----~~~~~l~~-~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip 692 (1445)
.+.||.+++|...+... .....+.. ++..++--.+++.....+++.+..+...
T Consensus 912 ------------TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~--------- 970 (1381)
T KOG0054|consen 912 ------------TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVI--------- 970 (1381)
T ss_pred ------------CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH---------
Confidence 46789999887555431 11111111 1111111112222222222111111111
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHhcCCcccccccCC-ccccHHHHHhhcCccc--------------------cchhHHH
Q 000523 693 KWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS-SETLGVQVLKSRGFFA--------------------HEYWYWL 751 (1445)
Q Consensus 693 ~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~-~~~~G~~~L~~~g~~~--------------------~~~~~w~ 751 (1445)
||.--..|...+--.....+...++..... ....|...++.++-.. ...-.|+
T Consensus 971 ------~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 971 ------YYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred ------HHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 111111222222222222222111111000 0112333333332110 0111344
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhcCCCCCCCcc--eeccccccccccc-cCCccccccCCCCCCccccccccchhhhhhh
Q 000523 752 GLGA-LFGFVLLLNFAYTLALTFLDPFEKPRAV--ITEEIESNEQDDR-IGGNVQLSTLGGSTDDIRGQQSSSQSLSLAE 827 (1445)
Q Consensus 752 ~~g~-l~~~~~~~~~~~~l~L~~l~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1445)
++-. ++|..+++..+....+........+..- ++....-....+. .....+.+....+.+++.. .....
T Consensus 1045 a~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~e-------Y~~~~ 1117 (1381)
T KOG0054|consen 1045 AVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLE-------YTDIP 1117 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHH-------HhcCC
Confidence 4322 1112222211111111111100000000 0000000000000 0000000001111111110 00001
Q ss_pred hhcCCCCCCCCcccCCC--ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhH
Q 000523 828 AEASRPKKKGMVLPFEP--HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 905 (1445)
Q Consensus 828 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L 905 (1445)
.+.+...+.....+.+| ..++|+|++.+|.. +-..+|||||+.|+|||++||+|++|||||||+++|
T Consensus 1118 ~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1118 SEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred CCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHH
Confidence 11111111111223344 57999999877753 223699999999999999999999999999999999
Q ss_pred hCCCCCCeEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC
Q 000523 906 AGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 982 (1445)
Q Consensus 906 ~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~ 982 (1445)
.+... +.+|+|.|||.++.+ ..+|++++.+||||.+|. -|+|. |.|+..+..++.+++++|.++
T Consensus 1187 FRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~----------NLDPf~e~sD~~IW~ALe~~~ 1253 (1381)
T KOG0054|consen 1187 FRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRF----------NLDPFDEYSDDEIWEALERCQ 1253 (1381)
T ss_pred HHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Ccccc----------ccCcccccCHHHHHHHHHHhC
Confidence 99876 468999999999765 467888999999998764 35555 446667777888999999999
Q ss_pred Cccccccccc------CCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000523 983 LNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056 (1445)
Q Consensus 983 L~~~~~~~vg------~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 1056 (1445)
|.+...++.+ .++..++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+..+ ++|||++.|
T Consensus 1254 Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAH 1332 (1381)
T KOG0054|consen 1254 LKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAH 1332 (1381)
T ss_pred hHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEee
Confidence 9876544332 235678999999999999999999999999999999999999999999999864 799999999
Q ss_pred CccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1057 QPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1057 qps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
+.+. +. .+|||+||++ |+++.+|.+
T Consensus 1333 Rl~T-Vm-d~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1333 RLNT-VM-DSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred ccch-hh-hcCeEEEeeC-CeEeecCCh
Confidence 9873 44 5799999996 799999987
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-70 Score=731.18 Aligned_cols=224 Identities=28% Similarity=0.412 Sum_probs=192.6
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.++. +++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|++.
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 4788999877631 12569999999999999999999999999999999999876 4589999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 926 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 926 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+..|..+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998777653 233444566889999999998888774 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
||||+||+||+.+|+||||||||+|||+.+++.+++.|+++.++|+|||+|||+++ ++..+|||+++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999985 89999998
Q ss_pred CCCchhhHHHHHH
Q 000523 1084 LGRHSCHLISYFE 1096 (1445)
Q Consensus 1084 ~~~~~~~~~~yF~ 1096 (1445)
. +++..-|.
T Consensus 2154 ~----q~Lk~~~g 2162 (2272)
T TIGR01257 2154 I----QHLKSKFG 2162 (2272)
T ss_pred H----HHHHHHhC
Confidence 6 45555553
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-68 Score=729.15 Aligned_cols=211 Identities=22% Similarity=0.304 Sum_probs=178.4
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 46999999998852 12359999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1445)
+.+ ..+|+.++||||++.++.. |++|||.+.. +.+ ++.++++++..++.+. .|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 764 4577889999999998874 9999996531 122 3347788888877643 34555553
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
..+||||||||++|||||+++|+||+||||||+||+.+...|+++|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999885 4899999999986 3566899999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++.+|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 899999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=721.85 Aligned_cols=211 Identities=20% Similarity=0.278 Sum_probs=178.2
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++|+|++++++. +.+.+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46999999999842 12359999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1445)
+.+ ..+++.++||||++.+++ -|++|||.+.. +.+ ++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 457788999999999887 49999996531 222 33477888888876543 4555554
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4899999999985 4566999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 899999986
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=707.10 Aligned_cols=217 Identities=20% Similarity=0.322 Sum_probs=179.4
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC------------
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 912 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~------------ 912 (1445)
..++|+||+|+|+.. ++..+|+|+|++|+||+++||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999998531 1236999999999999999999999999999999999976541
Q ss_pred ----------------------------------------eEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCH
Q 000523 913 ----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 913 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
+.+|+|.+||.++.+ ..+++.+|||+|++.+|+ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 148999999998754 457889999999998874 899
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illL 1022 (1445)
+|||.|+. ++.+.+ .++++++..++.+ -.|+.+|..| ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~e----eI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATRE----DVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCHH----HHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 233332 3667777766654 3477788554 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhceEeEEecC---cE-EEEEcCC
Q 000523 1023 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQ-EIYVGPL 1084 (1445)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hqps~~i~~~fD~v~~l~~g---G~-~~y~G~~ 1084 (1445)
|||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|++++|++| |+ ++..|+-
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999985 46789999999973 66 4578874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=705.12 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=178.5
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++|+|++++++.. ...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 469999999998531 1359999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1445)
+.+ ..+++.++||||++.+++. |++|||.... +.+ ++.++++++.+++.+. .|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 4577889999999999875 9999995211 222 2347788888887654 35556553
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
..+||||||||+||||||+++|+||+||||||+||+++...|+++|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4899999999985 4667899999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 899999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-65 Score=606.74 Aligned_cols=491 Identities=26% Similarity=0.323 Sum_probs=374.0
Q ss_pred eEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHH
Q 000523 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1445)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1445)
=++.+||++++... + ....+++||||++.+||+++|+|.|||||||+.++
T Consensus 5 lL~V~nL~v~~~~~-~-----------------------------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~ 54 (539)
T COG1123 5 LLEVENLTVEFATD-G-----------------------------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALA 54 (539)
T ss_pred eEEEeceEEEEecC-C-----------------------------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHH
Confidence 47889999998642 1 22469999999999999999999999999999999
Q ss_pred HhCCCCCC-CCceeEEEEcCccCCCcCc-------cceEEEEcCCC--CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHH
Q 000523 198 LAGKLDPT-LKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267 (1445)
Q Consensus 198 L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~ 267 (1445)
|.|.+++. ...+|+|.++|.++..... .+.++||+|++ .+-|-+||.+-+.=..+.++...
T Consensus 55 i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~--------- 125 (539)
T COG1123 55 LMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS--------- 125 (539)
T ss_pred HhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcccc---------
Confidence 99999987 4568999999997755443 26799999986 46677898888865544432111
Q ss_pred HHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCcccee
Q 000523 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347 (1445)
Q Consensus 268 ~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllL 347 (1445)
.++...++.++|+..||++.... +++++.|||||||||.||+||+.+|++|++
T Consensus 126 ------------------------~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIa 178 (539)
T COG1123 126 ------------------------RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIA 178 (539)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEE
Confidence 12334567889999999987654 568889999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCC
Q 000523 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRK 427 (1445)
Q Consensus 348 DEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~ 427 (1445)
||||++||..++.+|.+.|+++.+ ..++.++.++|+..-+.++||||+||.+|++|+.|+.+++.+.+ .
T Consensus 179 DEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p--------~-- 247 (539)
T COG1123 179 DEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNP--------Q-- 247 (539)
T ss_pred CCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhcc--------C--
Confidence 999999999999999999999876 56777888999999999999999999999999999999886411 0
Q ss_pred ChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCcccccccccccccccccCcHHHHHHH
Q 000523 428 GVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKA 507 (1445)
Q Consensus 428 ~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 507 (1445)
.||.. .+.++ .|.
T Consensus 248 -----------------------hpYT~----~Ll~a---------------~p~------------------------- 260 (539)
T COG1123 248 -----------------------HPYTR----GLLAA---------------VPR------------------------- 260 (539)
T ss_pred -----------------------CcccH----HHHhh---------------CCC-------------------------
Confidence 01100 00000 000
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHHHHHHHHHHHhHHHHHHHHhhhchhHH
Q 000523 508 NISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFY 587 (1445)
Q Consensus 508 ~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ 587 (1445)
..... ..
T Consensus 261 --------------------------------------~~~~~--~~--------------------------------- 267 (539)
T COG1123 261 --------------------------------------LGDEK--II--------------------------------- 267 (539)
T ss_pred --------------------------------------ccccc--cc---------------------------------
Confidence 00000 00
Q ss_pred HhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 000523 588 KQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVA 667 (1445)
Q Consensus 588 kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA 667 (1445)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCcccccccCCccccHHHHHhhcCccccch
Q 000523 668 NTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEY 747 (1445)
Q Consensus 668 ~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~ 747 (1445)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCCccccccCCCCCCccccccccchhhhhhh
Q 000523 748 WYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAE 827 (1445)
Q Consensus 748 ~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1445)
.. .. .
T Consensus 268 --------------------------------------------------------------~~-~~--------~---- 272 (539)
T COG1123 268 --------------------------------------------------------------RL-PR--------R---- 272 (539)
T ss_pred --------------------------------------------------------------cc-cc--------c----
Confidence 00 00 0
Q ss_pred hhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhC
Q 000523 828 AEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g 907 (1445)
.. .+ ...-++++|++..+..++.+. ....+...+++||||.+++||++||+|.||||||||.++|+|
T Consensus 273 --~~--------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 273 --GP--------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred --cc--------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 00 00 001244455544443322110 000133579999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCccC--Cc---ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 000523 908 RKTGGYITGNITISGYPK--KQ---ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 980 (1445)
Q Consensus 908 ~~~~~~~~G~i~i~g~~~--~~---~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~ 980 (1445)
..++ ..|.|.++|.+. .. ...++.+-+++||+ .+.|.+||++.+.-....... ....++++++.++++.
T Consensus 340 L~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~ 415 (539)
T COG1123 340 LLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLEL 415 (539)
T ss_pred CCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHH
Confidence 8874 589999999762 11 22345566667764 578999999999876544332 2245667789999999
Q ss_pred cCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCc
Q 000523 981 VELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1058 (1445)
Q Consensus 981 l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp 1058 (1445)
++|.. ..+.. +..||||||||++|||||+.+|++|++|||||.||+..+..|.++|+++.++ |.|.|+++||.
T Consensus 416 VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 416 VGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred cCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 99985 34443 5689999999999999999999999999999999999999999999999765 99999999998
Q ss_pred cHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1059 SIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1059 s~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
+. +.+.|||+.+|++ |++|..||.
T Consensus 491 ~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 491 AV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 74 7889999999985 899999985
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=627.80 Aligned_cols=457 Identities=21% Similarity=0.293 Sum_probs=347.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.+++
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 499999999999999999999999999999999999986 6 9999999998865432 356999999988899
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.++......+.. . ..+....++++++.+||++..+..+
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~-~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 141 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIM-D------------------------------YDAMYLRAQKLLAQLKLDINPATPV--- 141 (506)
T ss_pred CCcHHHHhhhcccccccCCc-C------------------------------HHHHHHHHHHHHHHcCCCCCcccch---
Confidence 99999999986432100000 0 0011224677899999987666555
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+.||+|++|+
T Consensus 142 --~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 142 --GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVIR 217 (506)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEEE
Confidence 46999999999999999999999999999999999999999999998854 3 4556668889999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000523 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1445)
+|++++.|+.+++.. .+..+.
T Consensus 218 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 238 (506)
T PRK13549 218 DGRHIGTRPAAGMTE--------------------------------------------DDIITM--------------- 238 (506)
T ss_pred CCEEeeecccccCCH--------------------------------------------HHHHHH---------------
Confidence 999998886432200 000000
Q ss_pred CCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhH
Q 000523 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1445)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g 559 (1445)
+. + .. .
T Consensus 239 -------------------------------------------------------------~~--~--~~-~-------- 244 (506)
T PRK13549 239 -------------------------------------------------------------MV--G--RE-L-------- 244 (506)
T ss_pred -------------------------------------------------------------hh--C--cC-c--------
Confidence 00 0 00 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 000523 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1445)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~ 639 (1445)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCC
Q 000523 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1445)
Q Consensus 640 ~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~ 719 (1445)
+
T Consensus 245 ----------------------------------------------------~--------------------------- 245 (506)
T PRK13549 245 ----------------------------------------------------T--------------------------- 245 (506)
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred cccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCC
Q 000523 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1445)
Q Consensus 720 ~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1445)
. . .+
T Consensus 246 ---~-------------------------------------------------~-~~----------------------- 249 (506)
T PRK13549 246 ---A-------------------------------------------------L-YP----------------------- 249 (506)
T ss_pred ---c-------------------------------------------------c-cc-----------------------
Confidence 0 0 00
Q ss_pred ccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecce
Q 000523 800 NVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVS 879 (1445)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs 879 (1445)
. . . ... ...-++++|+++.++.. +++.+|+|||
T Consensus 250 ----------~------------~---~----~~~--------~~~~l~~~~l~~~~~~~----------~~~~vl~~vs 282 (506)
T PRK13549 250 ----------R------------E---P----HTI--------GEVILEVRNLTAWDPVN----------PHIKRVDDVS 282 (506)
T ss_pred ----------c------------c---c----cCC--------CCceEEEecCccccccc----------ccccccccee
Confidence 0 0 0 000 00025566666544210 1235899999
Q ss_pred EEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc----ccccceEEEeccCC---CCCCCCCHHHH
Q 000523 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPFVTIYES 952 (1445)
Q Consensus 880 ~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~E~ 952 (1445)
++|++||++||+||||||||||+++|+|..++ +.+|+|.++|.+... ...++.+||++|++ .+++.+||.|+
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~ 361 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKN 361 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHH
Confidence 99999999999999999999999999998641 248999999976532 12245689999985 46788999999
Q ss_pred HHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000523 953 LLFSAWLRLS--PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1445)
Q Consensus 953 l~f~~~lr~~--~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgL 1029 (1445)
+.+....... ...+....++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|++|+|||||+||
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~L 436 (506)
T PRK13549 362 ITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436 (506)
T ss_pred hhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCc
Confidence 9875321111 0012233445688999999996 4666653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCC
Q 000523 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1086 (1445)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~ 1086 (1445)
|+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..+
T Consensus 437 D~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 437 DVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 999999999999999888999999999986 57889999999986 79999988754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-64 Score=627.20 Aligned_cols=457 Identities=21% Similarity=0.296 Sum_probs=346.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 24699999998889999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.++..... ..+.. +..+ ..+...+++++++.+||++..|+.++
T Consensus 96 tv~e~l~~~~~~~~--~~~~~--------------~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~---- 144 (510)
T PRK09700 96 TVLENLYIGRHLTK--KVCGV--------------NIID-----------WREMRVRAAMMLLRVGLKVDLDEKVA---- 144 (510)
T ss_pred cHHHHhhhcccccc--ccccc--------------cccC-----------HHHHHHHHHHHHHHcCCCCCcccchh----
Confidence 99999987532100 00000 0000 00112346778999999877776554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.++||++++|++|
T Consensus 145 -~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 145 -NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999864 3 455666889999999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 000523 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1445)
Q Consensus 402 ~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1445)
++++.|+++++.. .+..+.
T Consensus 222 ~i~~~g~~~~~~~--------------------------------------------~~~~~~----------------- 240 (510)
T PRK09700 222 SSVCSGMVSDVSN--------------------------------------------DDIVRL----------------- 240 (510)
T ss_pred EEeeecchhhCCH--------------------------------------------HHHHHH-----------------
Confidence 9999887654210 000000
Q ss_pred cccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHH
Q 000523 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1445)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1445)
.. + .. ..
T Consensus 241 -----------------------------------------------------------~~--~--~~-~~--------- 247 (510)
T PRK09700 241 -----------------------------------------------------------MV--G--RE-LQ--------- 247 (510)
T ss_pred -----------------------------------------------------------hc--C--CC-cc---------
Confidence 00 0 00 00
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000523 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1445)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~ 641 (1445)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCcc
Q 000523 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1445)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~ 721 (1445)
...
T Consensus 248 -----------------------------------------------------------------------------~~~ 250 (510)
T PRK09700 248 -----------------------------------------------------------------------------NRF 250 (510)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred cccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCCcc
Q 000523 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1445)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1445)
. . . .+
T Consensus 251 ~----~--------------~--------------------------------~~------------------------- 255 (510)
T PRK09700 251 N----A--------------M--------------------------------KE------------------------- 255 (510)
T ss_pred c----c--------------c--------------------------------cc-------------------------
Confidence 0 0 0 00
Q ss_pred ccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecceEE
Q 000523 802 QLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGA 881 (1445)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~ 881 (1445)
. . . ... .+.-+.++|++... ..+|+|+|++
T Consensus 256 --------~------------~------~--~~~-------~~~~l~~~~l~~~~---------------~~~l~~isl~ 285 (510)
T PRK09700 256 --------N------------V------S--NLA-------HETVFEVRNVTSRD---------------RKKVRDISFS 285 (510)
T ss_pred --------c------------c------c--cCC-------CCcEEEEeCccccC---------------CCcccceeEE
Confidence 0 0 0 000 00135667766431 1279999999
Q ss_pred eeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc----ccccceEEEeccC---CCCCCCCCHHHHHH
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQN---DIHSPFVTIYESLL 954 (1445)
Q Consensus 882 i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---d~~~~~lTv~E~l~ 954 (1445)
|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|+ ..+++.+||.|++.
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMA 363 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhc
Confidence 99999999999999999999999999875 458999999976532 1234568999998 45788899999998
Q ss_pred HHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000523 955 FSAWLR---LSP--E-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1445)
Q Consensus 955 f~~~lr---~~~--~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTs 1027 (1445)
+....+ ... . ......++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|+||+|||||+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 438 (510)
T PRK09700 364 ISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTR 438 (510)
T ss_pred cccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 753221 000 0 11222334578899999996 6666653 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|||+.++..+++.|++++++|.|||+++||+. .+.+.+|++++|++ |+++..++.
T Consensus 439 ~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 439 GIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999999999999878999999999986 57889999999986 788888865
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-64 Score=624.22 Aligned_cols=449 Identities=21% Similarity=0.326 Sum_probs=344.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 4999999999999999999999999999999999999998 9999999988754321 35699999998889999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.|+.......... + ..+...+++++++.+||++..|..++
T Consensus 95 tv~e~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRI-------------------D-----------WKKMYAEADKLLARLNLRFSSDKLVG---- 140 (501)
T ss_pred cHHHHhhhccccccccCcc-------------------C-----------HHHHHHHHHHHHHHcCCCCCccCchh----
Confidence 9999999864321000000 0 00112345678999999887765554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.. . +++|+.++|+..++.++||+|++|++|
T Consensus 141 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 141 -ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 5999999999999999999999999999999999999999999998754 3 455666889999999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 000523 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1445)
Q Consensus 402 ~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1445)
+++..|+.+++.. ++..+.
T Consensus 218 ~i~~~~~~~~~~~--------------------------------------------~~~~~~----------------- 236 (501)
T PRK10762 218 QFIAEREVADLTE--------------------------------------------DSLIEM----------------- 236 (501)
T ss_pred EEEEecCcCcCCH--------------------------------------------HHHHHH-----------------
Confidence 9998775432100 000000
Q ss_pred cccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHH
Q 000523 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1445)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1445)
++ . .
T Consensus 237 -----------------------------------------------------------~~--~---~------------ 240 (501)
T PRK10762 237 -----------------------------------------------------------MV--G---R------------ 240 (501)
T ss_pred -----------------------------------------------------------hc--C---C------------
Confidence 00 0 0
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000523 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1445)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~ 641 (1445)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCcc
Q 000523 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1445)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~ 721 (1445)
+.
T Consensus 241 ------------------------------------------------------------------------------~~ 242 (501)
T PRK10762 241 ------------------------------------------------------------------------------KL 242 (501)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 00
Q ss_pred cccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCCcc
Q 000523 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1445)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1445)
... .+
T Consensus 243 ~~~--------------------------------------------------~~------------------------- 247 (501)
T PRK10762 243 EDQ--------------------------------------------------YP------------------------- 247 (501)
T ss_pred ccc--------------------------------------------------cc-------------------------
Confidence 000 00
Q ss_pred ccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecceEE
Q 000523 802 QLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGA 881 (1445)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~ 881 (1445)
. . . .. + .+..++++|++. .+|+|+|++
T Consensus 248 --------~------------~---~-----~~------~-~~~~l~~~~l~~------------------~~l~~vsl~ 274 (501)
T PRK10762 248 --------R------------L---D-----KA------P-GEVRLKVDNLSG------------------PGVNDVSFT 274 (501)
T ss_pred --------c------------c---c-----cC------C-CCcEEEEeCccc------------------CCcccceEE
Confidence 0 0 0 00 0 001245555541 269999999
Q ss_pred eeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHH
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTIYESLL 954 (1445)
Q Consensus 882 i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~ 954 (1445)
|++||+++|+|||||||||||++|+|... +.+|+|.++|.+.... ..++.+||++|++ .+++.+||.|++.
T Consensus 275 i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 352 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 (501)
T ss_pred EcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence 99999999999999999999999999875 4589999999775421 2345699999995 4678899999998
Q ss_pred HHHHhcCC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000523 955 FSAWLRLS---PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1445)
Q Consensus 955 f~~~lr~~---~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD 1030 (1445)
+....... .....++.++.++++++.+++. +..+.. +..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD 427 (501)
T PRK10762 353 LTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427 (501)
T ss_pred hhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCC
Confidence 75321110 0012233345688999999995 566665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCC
Q 000523 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1086 (1445)
Q Consensus 1031 ~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~ 1086 (1445)
+.++..+.+.|++++++|.|||+++|++. .+.+.+|++++|++ |++++.|+..+
T Consensus 428 ~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 428 VGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 99999999999999878999999999986 57889999999985 79999988753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=630.58 Aligned_cols=487 Identities=21% Similarity=0.244 Sum_probs=352.3
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCC----------CcC------c-cce
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----------EFV------P-QRT 227 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----------~~~------~-~~~ 227 (1445)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 45999999999999999999999999999999999999998 999999986431 111 1 246
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHhHHhc-CCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHH
Q 000523 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1445)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1445)
++||+|++ .+++.+||+||+.++.+.. +.. ..+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------------------------------REEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 99999987 5788899999999876432 110 0011234677899
Q ss_pred HcCCcc---cccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 000523 305 VLGLDV---CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381 (1445)
Q Consensus 305 ~lgL~~---~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i 381 (1445)
.+||++ ..+ +.+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+ ..+++||.+
T Consensus 152 ~~gL~~~~~~~~-----~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~-~~g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILS-----RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQK-EMSMGVIFI 225 (623)
T ss_pred HCCCCChhhHHh-----CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHH-hcCCEEEEE
Confidence 999964 234 34557999999999999999999999999999999999999999999999865 334556778
Q ss_pred ecCchhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHH
Q 000523 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEF 461 (1445)
Q Consensus 382 ~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (1445)
+|+..++.++||+|++|++|++++.|+++++.. -|.+. +. ..+
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~----~~-------------------------~~l 268 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHP----YT-------------------------RAL 268 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCCh----hh-------------------------hhh
Confidence 999999999999999999999999998776521 00000 00 000
Q ss_pred HHHHHhchhhhhhHHhhcCCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 000523 462 AEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLF 541 (1445)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f 541 (1445)
.+.. +. ..
T Consensus 269 ~~~~---------------~~------~~--------------------------------------------------- 276 (623)
T PRK10261 269 LAAV---------------PQ------LG--------------------------------------------------- 276 (623)
T ss_pred hhcc---------------Cc------cc---------------------------------------------------
Confidence 0000 00 00
Q ss_pred hcccCCCccccccchhhHHHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHH
Q 000523 542 LRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVF 621 (1445)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~ 621 (1445)
.+..... |
T Consensus 277 ---~~~~~~~----------------------------------------------------------~----------- 284 (623)
T PRK10261 277 ---AMKGLDY----------------------------------------------------------P----------- 284 (623)
T ss_pred ---ccccccC----------------------------------------------------------C-----------
Confidence 0000000 0
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHH
Q 000523 622 LSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWC 701 (1445)
Q Consensus 622 i~Y~~~g~~~~~~rff~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~i 701 (1445)
T Consensus 285 -------------------------------------------------------------------------------- 284 (623)
T PRK10261 285 -------------------------------------------------------------------------------- 284 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHhcCCcccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000523 702 SPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781 (1445)
Q Consensus 702 sP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~ 781 (1445)
..... . .
T Consensus 285 -----------------~~~~~--------~----------------------------------------------~-- 291 (623)
T PRK10261 285 -----------------RRFPL--------I----------------------------------------------S-- 291 (623)
T ss_pred -----------------ccccc--------c----------------------------------------------c--
Confidence 00000 0 0
Q ss_pred cceeccccccccccccCCccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchh
Q 000523 782 AVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEE 861 (1445)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 861 (1445)
. . .. . . .. +. . . .. ... + ...-++++|+++.+.....
T Consensus 292 ---~-~---~~--~---~----------~~--~~-------~---~--~~-~~~-----~-~~~~L~~~~l~~~y~~~~~ 328 (623)
T PRK10261 292 ---L-E---HP--A---K----------QE--PP-------I---E--QD-TVV-----D-GEPILQVRNLVTRFPLRSG 328 (623)
T ss_pred ---c-c---cc--c---c----------cC--cc-------c---c--cc-ccc-----C-CCceEEEeeeEEEEcCCCc
Confidence 0 0 00 0 0 00 00 0 0 00 000 0 0113778888877642100
Q ss_pred hhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc------cccceEE
Q 000523 862 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------TFARISG 935 (1445)
Q Consensus 862 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~g 935 (1445)
. .. .....+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... .+++.++
T Consensus 329 ~-~~-~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~ 404 (623)
T PRK10261 329 L-LN-RVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQ 404 (623)
T ss_pred c-cc-ccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeE
Confidence 0 00 00012469999999999999999999999999999999999876 4589999999865321 2356799
Q ss_pred EeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHH
Q 000523 936 YCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVE 1012 (1445)
Q Consensus 936 yv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~ 1012 (1445)
|++|++ .+++.+||.|++.+....+. ....++.++.+.++++.++|. +..+.. +..|||||||||+|||+
T Consensus 405 ~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAra 477 (623)
T PRK10261 405 FIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARA 477 (623)
T ss_pred EEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHH
Confidence 999996 57889999999987654321 112334456788999999996 455655 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1013 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1013 L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++ .+.+.+|++++|++ |++++.|+.
T Consensus 478 L~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 478 LALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999765 899999999987 57788999999985 799999986
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=669.54 Aligned_cols=210 Identities=19% Similarity=0.233 Sum_probs=178.0
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++|+||+++++. +.+.+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999999863 12469999999999999999999999999999999999864 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1445)
+.+ ..+++.++||||++.+++ -||+|||.... .. .++.++++++.++|.+. .|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 457788999999999987 49999994321 11 23457889999988654 35555543
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
..+||||||||+||||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4799999999985 4567999999986
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++.+|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 799999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=619.06 Aligned_cols=464 Identities=22% Similarity=0.277 Sum_probs=345.4
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCcCc-------cceEEEEcCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1445)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 359999999999999999999999999999999999998610 128999999998755321 24699999986
Q ss_pred C--CCCCCCHHHHHHHhHHhc-CCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccc-
Q 000523 236 N--HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC- 311 (1445)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 311 (1445)
. +.+.+||+|++.+..... +.. ..+...+++++++.+||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 100 00112346778999999752
Q ss_pred --ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHH
Q 000523 312 --ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (1445)
Q Consensus 312 --~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~ 389 (1445)
.|. .+..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.+. .+.+||.++|+..++.
T Consensus 148 ~~~~~-----~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTD-----YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhh-----CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHH
Confidence 344 34569999999999999999999999999999999999999999999997653 3455666889999999
Q ss_pred hhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhch
Q 000523 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFH 469 (1445)
Q Consensus 390 ~~~D~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1445)
++||+|++|++|++++.|+.+++.+. |.
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------------------------- 249 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------------------------- 249 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CC--------------------------------------------
Confidence 99999999999999999977654210 00
Q ss_pred hhhhhHHhhcCCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 000523 470 VGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549 (1445)
Q Consensus 470 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~ 549 (1445)
+. . . +.+ +...
T Consensus 250 ------------------~~-----------~---~-----~~~----------------------------~~~~---- 260 (529)
T PRK15134 250 ------------------HP-----------Y---T-----QKL----------------------------LNSE---- 260 (529)
T ss_pred ------------------CH-----------H---H-----HHH----------------------------HHhC----
Confidence 00 0 0 000 0000
Q ss_pred cccccchhhHHHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCC
Q 000523 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGY 629 (1445)
Q Consensus 550 ~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~ 629 (1445)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHH
Q 000523 630 DSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQN 709 (1445)
Q Consensus 630 ~~~~~rff~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~ 709 (1445)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCcccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceecccc
Q 000523 710 AIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIE 789 (1445)
Q Consensus 710 al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~ 789 (1445)
. . . .+
T Consensus 261 -------------~---~-----~-----------------------------------------~~------------- 265 (529)
T PRK15134 261 -------------P---S-----G-----------------------------------------DP------------- 265 (529)
T ss_pred -------------c---c-----c-----------------------------------------cc-------------
Confidence 0 0 0 00
Q ss_pred ccccccccCCccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccC
Q 000523 790 SNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLE 869 (1445)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 869 (1445)
. . . . .. .+.-++++|+++.+....+. .+ ...
T Consensus 266 ---------------------~-----------~---~---~-~~--------~~~~l~~~~l~~~~~~~~~~-~~-~~~ 296 (529)
T PRK15134 266 ---------------------V-----------P---L---P-EP--------ASPLLDVEQLQVAFPIRKGI-LK-RTV 296 (529)
T ss_pred ---------------------c-----------c---c---C-CC--------CCCcccccCcEEEeecCccc-cc-ccc
Confidence 0 0 0 0 00 00024566666655311000 00 000
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc------cccceEEEeccCC--
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------TFARISGYCEQND-- 941 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d-- 941 (1445)
+.+.+|+|||++|++||++||+||||||||||+++|+|..+ .+|+|.++|.++... .+++.+||++|+.
T Consensus 297 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 373 (529)
T PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNS 373 (529)
T ss_pred ccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchh
Confidence 12469999999999999999999999999999999999863 479999999765321 1245689999996
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEE
Q 000523 942 IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020 (1445)
Q Consensus 942 ~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~il 1020 (1445)
.+++.+||.|++.+....+.. .....+.++.++++++.++|. +..+.. +..|||||||||+||++|+.+|++|
T Consensus 374 ~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 447 (529)
T PRK15134 374 SLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLI 447 (529)
T ss_pred hcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEE
Confidence 477889999999886543211 122334456688999999997 455654 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1021 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1021 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
+|||||+|||+.++..+++.|++++++ |+|||+++|++. .+.+.+|++++|++ |+++..|+.
T Consensus 448 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred EeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999865 899999999986 57788999999986 799999875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=618.16 Aligned_cols=444 Identities=23% Similarity=0.317 Sum_probs=340.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEEcC-----------------------ccCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNG-----------------------HDMD 220 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G-----------------------~~~~ 220 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++.
T Consensus 14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 90 (520)
T TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLE 90 (520)
T ss_pred EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccccccccccccccccccccc
Confidence 4999999999999999999999999999999999997 677 99999972 2221
Q ss_pred -------Cc------CccceEEEEcCC-CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHH
Q 000523 221 -------EF------VPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286 (1445)
Q Consensus 221 -------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~ 286 (1445)
.. ..++.++|++|+ +.+++.+||+||+.|+....+.. .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~-~--------------------------- 142 (520)
T TIGR03269 91 PEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE-G--------------------------- 142 (520)
T ss_pred ccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC-H---------------------------
Confidence 00 013568999997 57888899999999865432210 0
Q ss_pred HHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH
Q 000523 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366 (1445)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L 366 (1445)
.+...+++++++.+||++..+..+ +.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|
T Consensus 143 ------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 211 (520)
T TIGR03269 143 ------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL 211 (520)
T ss_pred ------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH
Confidence 011234677899999987666444 469999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhh
Q 000523 367 RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYW 446 (1445)
Q Consensus 367 ~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~ 446 (1445)
+++++.. +.+|+.++|+...+.++||+|++|++|++++.|+++++.+.+..
T Consensus 212 ~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~---------------------------- 262 (520)
T TIGR03269 212 EEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME---------------------------- 262 (520)
T ss_pred HHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh----------------------------
Confidence 9986533 45566688999999999999999999999988865533110000
Q ss_pred hccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHH
Q 000523 447 AHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFK 526 (1445)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~ 526 (1445)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccccccchhhHHHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHH
Q 000523 527 LIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 606 (1445)
Q Consensus 527 ~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i 606 (1445)
... .
T Consensus 263 ------------------~~~--~-------------------------------------------------------- 266 (520)
T TIGR03269 263 ------------------GVS--E-------------------------------------------------------- 266 (520)
T ss_pred ------------------hch--h--------------------------------------------------------
Confidence 000 0
Q ss_pred HhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhccc
Q 000523 607 LKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFIL 686 (1445)
Q Consensus 607 ~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i 686 (1445)
T Consensus 267 -------------------------------------------------------------------------------- 266 (520)
T TIGR03269 267 -------------------------------------------------------------------------------- 266 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCcccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHH
Q 000523 687 SREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFA 766 (1445)
Q Consensus 687 ~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~ 766 (1445)
+ ...
T Consensus 267 ----~------------------------------~~~------------------------------------------ 270 (520)
T TIGR03269 267 ----V------------------------------EKE------------------------------------------ 270 (520)
T ss_pred ----h------------------------------ccc------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHhcCCCCCCCcceeccccccccccccCCccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCce
Q 000523 767 YTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHS 846 (1445)
Q Consensus 767 ~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (1445)
.. . +. ...-
T Consensus 271 --------~~----------------------------------------------~---------~~--------~~~~ 279 (520)
T TIGR03269 271 --------CE----------------------------------------------V---------EV--------GEPI 279 (520)
T ss_pred --------cc----------------------------------------------c---------CC--------CCce
Confidence 00 0 00 0012
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEc-Ccc-
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 924 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~- 924 (1445)
++++|+++.+.... .+.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISVD--------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccCC--------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 56677776653100 012469999999999999999999999999999999999875 458999996 532
Q ss_pred --CCc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccc
Q 000523 925 --KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-----LRQSLV 991 (1445)
Q Consensus 925 --~~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~v 991 (1445)
... ...++.+||++|++.+++.+||.|++.+...+. ...+..++.++++++.++|.+ ..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999988889999999998754321 122333456788999999975 34444
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEe
Q 000523 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1070 (1445)
Q Consensus 992 g~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~ 1070 (1445)
+..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |.|||+++|++. .+.+.+|+++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 4679999999999999999999999999999999999999999999999764 899999999986 5778899999
Q ss_pred EEecCcEEEEEcCC
Q 000523 1071 LMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1071 ~l~~gG~~~y~G~~ 1084 (1445)
+|++ |+++..|+.
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 789988875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-63 Score=616.33 Aligned_cols=452 Identities=20% Similarity=0.278 Sum_probs=342.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 24699999998899999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.|+.... + +....++++++.+||++..+..++
T Consensus 102 tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 139 (510)
T PRK15439 102 SVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSAG---- 139 (510)
T ss_pred cHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCChh----
Confidence 9999998753100 0 011235678899999877766554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ . +.+|+.++|+..++.++||+|++|++|
T Consensus 140 -~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 140 -SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999998754 3 455666889999999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 000523 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1445)
Q Consensus 402 ~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1445)
++++.|+.+++... +. .+.+..
T Consensus 217 ~i~~~g~~~~~~~~---------------~~-----------------------------~~~~~~-------------- 238 (510)
T PRK15439 217 TIALSGKTADLSTD---------------DI-----------------------------IQAITP-------------- 238 (510)
T ss_pred EEEEecChHHcCHH---------------HH-----------------------------HHHHhC--------------
Confidence 99999987653210 00 000000
Q ss_pred cccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHH
Q 000523 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1445)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1445)
+ ... ......
T Consensus 239 ------------------------------------~--------------------------~~~-~~~~~~------- 248 (510)
T PRK15439 239 ------------------------------------A--------------------------ARE-KSLSAS------- 248 (510)
T ss_pred ------------------------------------c--------------------------ccc-cccccc-------
Confidence 0 000 000000
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000523 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1445)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~ 641 (1445)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCcc
Q 000523 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1445)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~ 721 (1445)
. ..
T Consensus 249 --------------------------------------------------~---------------------------~~ 251 (510)
T PRK15439 249 --------------------------------------------------Q---------------------------KL 251 (510)
T ss_pred --------------------------------------------------c---------------------------cc
Confidence 0 00
Q ss_pred cccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCCcc
Q 000523 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1445)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1445)
. ..+ +
T Consensus 252 ~-----------------~~~---------------------------------~------------------------- 256 (510)
T PRK15439 252 W-----------------LEL---------------------------------P------------------------- 256 (510)
T ss_pred c-----------------ccc---------------------------------c-------------------------
Confidence 0 000 0
Q ss_pred ccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecceEE
Q 000523 802 QLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGA 881 (1445)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~ 881 (1445)
. . . . .. +..+.-+.++|++. .+|+|||++
T Consensus 257 -------------~-------~---~--~--~~------~~~~~~l~~~~l~~------------------~~l~~isl~ 285 (510)
T PRK15439 257 -------------G-------N---R--R--QQ------AAGAPVLTVEDLTG------------------EGFRNISLE 285 (510)
T ss_pred -------------c-------c---c--c--cc------CCCCceEEEeCCCC------------------CCccceeEE
Confidence 0 0 0 0 00 00011255666641 158999999
Q ss_pred eeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHH
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTIYESLL 954 (1445)
Q Consensus 882 i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~ 954 (1445)
|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++.
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 286 VRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 99999999999999999999999999865 4589999999865421 1234689999984 4778899999986
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000523 955 FSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033 (1445)
Q Consensus 955 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~ 1033 (1445)
.....+..........++.++++++.+++. +..+.. ++.|||||||||+||++|+.+|+||+|||||+|||+.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~ 438 (510)
T PRK15439 364 ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438 (510)
T ss_pred hhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhH
Confidence 421111110011222345678999999996 566665 35799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCC
Q 000523 1034 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1034 ~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~ 1085 (1445)
+..+++.|++++++|.|||+++|++. .+.+.+|++++|++ |++++.|..+
T Consensus 439 ~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 439 RNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999888999999999997 58889999999985 7999888654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=669.74 Aligned_cols=211 Identities=23% Similarity=0.261 Sum_probs=178.9
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..+.|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999999852 12359999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1445)
+.. ..+++.+|||||++.++. -||+|||... .+.+ ++.++++++.+++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 457889999999999887 4999999531 1222 3457889999888764 35566654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 995 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
..+||||||||++|||||+++ |+||+||||||+||+.+...|+++|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 367999999999999999996 89999999999999999999999999874 4799999999985 567899999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 5 899999985
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=613.60 Aligned_cols=457 Identities=19% Similarity=0.270 Sum_probs=343.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.+++
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 499999999999999999999999999999999999986 5 8999999998765432 356999999988899
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccc-cccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMVGD 318 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~ 318 (1445)
.+||+||+.++......+.... ..+...+++++++.+||++.. +..
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMA------------------------------YNAMYLRAKNLLRELQLDADNVTRP--- 138 (500)
T ss_pred CCcHHHHHHhhccccccccccC------------------------------HHHHHHHHHHHHHHcCCCCCcccCc---
Confidence 9999999988643210000000 001123466789999997654 333
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
++.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.. . +++|+.++|+..++.+.||+|++|
T Consensus 139 --~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 139 --VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred --hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEE
Confidence 446999999999999999999999999999999999999999999998754 3 455666889999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhh
Q 000523 399 SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDEL 478 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 478 (1445)
++|++++.|+.+++.. .+.
T Consensus 215 ~~G~i~~~~~~~~~~~--------------------------------------------~~~----------------- 233 (500)
T TIGR02633 215 RDGQHVATKDMSTMSE--------------------------------------------DDI----------------- 233 (500)
T ss_pred eCCeEeeecCcccCCH--------------------------------------------HHH-----------------
Confidence 9999987664321000 000
Q ss_pred cCCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhh
Q 000523 479 RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFA 558 (1445)
Q Consensus 479 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~ 558 (1445)
. . .+. + .
T Consensus 234 --------------------------~-----~----------------------------~~~--~---~--------- 240 (500)
T TIGR02633 234 --------------------------I-----T----------------------------MMV--G---R--------- 240 (500)
T ss_pred --------------------------H-----H----------------------------HHh--C---c---------
Confidence 0 0 000 0 0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 000523 559 GATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFK 638 (1445)
Q Consensus 559 g~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~ 638 (1445)
+
T Consensus 241 ---------------------------------------------------~---------------------------- 241 (500)
T TIGR02633 241 ---------------------------------------------------E---------------------------- 241 (500)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcC
Q 000523 639 QYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLG 718 (1445)
Q Consensus 639 ~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~ 718 (1445)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccC
Q 000523 719 HSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 798 (1445)
Q Consensus 719 ~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1445)
. . .. .+
T Consensus 242 ----~--~--------------~~--------------------------------~~---------------------- 247 (500)
T TIGR02633 242 ----I--T--------------SL--------------------------------YP---------------------- 247 (500)
T ss_pred ----c--c--------------cc--------------------------------cc----------------------
Confidence 0 0 00 00
Q ss_pred CccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecc
Q 000523 799 GNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGV 878 (1445)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 878 (1445)
.. . ... .+.-++++|+++.+.. .+++.+|+|+
T Consensus 248 -----------~~---------------~----~~~--------~~~~l~~~~l~~~~~~----------~~~~~~l~~i 279 (500)
T TIGR02633 248 -----------HE---------------P----HEI--------GDVILEARNLTCWDVI----------NPHRKRVDDV 279 (500)
T ss_pred -----------cc---------------c----cCC--------CCceEEEeCCcccccc----------cccccccccc
Confidence 00 0 000 0012556666654310 0123589999
Q ss_pred eEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc----ccccceEEEeccCC---CCCCCCCHHH
Q 000523 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPFVTIYE 951 (1445)
Q Consensus 879 s~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~E 951 (1445)
|++|++||+++|+|||||||||||++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .+++.+||+|
T Consensus 280 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~ 358 (500)
T TIGR02633 280 SFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGK 358 (500)
T ss_pred eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHH
Confidence 999999999999999999999999999998752 147999999987632 12345689999995 4788899999
Q ss_pred HHHHHHH--hcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000523 952 SLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1445)
Q Consensus 952 ~l~f~~~--lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsg 1028 (1445)
++.++.. ............++.++++++.+++.+ ..+.. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~ 433 (500)
T TIGR02633 359 NITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG 433 (500)
T ss_pred HhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 9987532 111011122334456889999999964 45655 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCC
Q 000523 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~ 1085 (1445)
||+.++..+++.|++++++|.|||++|||++ ++.+.+|++++|++ |+++..++..
T Consensus 434 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 434 VDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred cCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999888999999999986 57889999999985 7888877653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=612.35 Aligned_cols=451 Identities=21% Similarity=0.308 Sum_probs=341.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++.+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 4999999999999999999999999999999999999998 9999999988754321 35799999998889999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.++......+.. + ..+....++++++.+||++..+..+
T Consensus 95 tv~~~l~~~~~~~~~~~~--------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~----- 138 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIV--------------------N-----------RRLLNYEAREQLEHLGVDIDPDTPL----- 138 (501)
T ss_pred CHHHHHHhcccccccCCC--------------------C-----------HHHHHHHHHHHHHHcCCCCCcCCch-----
Confidence 999999985321000000 0 0011234567899999986665544
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.++||+|++|++|
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 3 455666888889999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 000523 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1445)
Q Consensus 402 ~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1445)
+++..++..+. .+.++..+.
T Consensus 217 ~i~~~~~~~~~-------------------------------------------~~~~~~~~~----------------- 236 (501)
T PRK11288 217 RYVATFDDMAQ-------------------------------------------VDRDQLVQA----------------- 236 (501)
T ss_pred EEEeecCcccc-------------------------------------------CCHHHHHHH-----------------
Confidence 99865421000 000000000
Q ss_pred cccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhHHH
Q 000523 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1445)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1445)
+. . .. .
T Consensus 237 -----------------------------------------------------------~~--~--~~-~---------- 242 (501)
T PRK11288 237 -----------------------------------------------------------MV--G--RE-I---------- 242 (501)
T ss_pred -----------------------------------------------------------hc--C--CC-c----------
Confidence 00 0 00 0
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000523 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1445)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~~ 641 (1445)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCCcc
Q 000523 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1445)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~ 721 (1445)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCCcc
Q 000523 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1445)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1445)
. .. ..
T Consensus 243 ~------------------~~--------------------------------~~------------------------- 247 (501)
T PRK11288 243 G------------------DI--------------------------------YG------------------------- 247 (501)
T ss_pred c------------------cc--------------------------------cc-------------------------
Confidence 0 00 00
Q ss_pred ccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecceEE
Q 000523 802 QLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGA 881 (1445)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~ 881 (1445)
.. + .. ..+..+.++|+++. .+++|+|++
T Consensus 248 --------~~--~-------------------~~------~~~~~l~~~~~~~~-----------------~~l~~isl~ 275 (501)
T PRK11288 248 --------YR--P-------------------RP------LGEVRLRLDGLKGP-----------------GLREPISFS 275 (501)
T ss_pred --------cc--c-------------------cC------CCCcEEEEeccccC-----------------CcccceeEE
Confidence 00 0 00 00113555665421 379999999
Q ss_pred eeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc----ccccceEEEeccCC---CCCCCCCHHHHHH
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPFVTIYESLL 954 (1445)
Q Consensus 882 i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~E~l~ 954 (1445)
|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .+++.+|+.|++.
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 353 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN 353 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhc
Confidence 99999999999999999999999999875 458999999976532 12245689999985 4788899999998
Q ss_pred HHHHhcCCC-C--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000523 955 FSAWLRLSP-E--VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1445)
Q Consensus 955 f~~~lr~~~-~--~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD 1030 (1445)
+........ . ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD 428 (501)
T PRK11288 354 ISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428 (501)
T ss_pred cccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCC
Confidence 753221100 0 01222345678899999994 5666664 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCCc
Q 000523 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 1087 (1445)
Q Consensus 1031 ~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~~ 1087 (1445)
+.++..+++.|+++++.|.|||+++||+. ++.+.+|++++|++ |++++.|..++.
T Consensus 429 ~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 429 VGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 99999999999999888999999999986 58889999999985 789999987643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=599.26 Aligned_cols=450 Identities=18% Similarity=0.285 Sum_probs=340.0
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1445)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35999999999999999999999999999999999999998 9999999998754322 3569999999888899
Q ss_pred CCHHHHHHHhHH-hcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
+||+||+.++.. ..+.... ..+....++++++.+||++..+..+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 132 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVD--------------------------------QDKMYRDTKAIFDELDIDIDPRAKV--- 132 (491)
T ss_pred CCHHHHhhcccccccccccC--------------------------------HHHHHHHHHHHHHHcCCCCCccCch---
Confidence 999999987531 1110000 0001124567889999987666554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++. . +.+|+.++|+..++.+.||+|++|+
T Consensus 133 --~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 133 --ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-R-GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 4456668889999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000523 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1445)
+|+++..|+.+++.. .+..+.
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 229 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAM--------------- 229 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHH---------------
Confidence 999998876532100 000000
Q ss_pred CCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhH
Q 000523 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1445)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g 559 (1445)
+. + ..
T Consensus 230 -------------------------------------------------------------~~--~--~~---------- 234 (491)
T PRK10982 230 -------------------------------------------------------------MV--G--RS---------- 234 (491)
T ss_pred -------------------------------------------------------------Hh--C--CC----------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 000523 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1445)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~ 639 (1445)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCC
Q 000523 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1445)
Q Consensus 640 ~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~ 719 (1445)
.
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred cccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCC
Q 000523 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1445)
Q Consensus 720 ~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1445)
.. . + +
T Consensus 236 --~~-----------------~-------------------------------~--~----------------------- 240 (491)
T PRK10982 236 --TQ-----------------R-------------------------------F--P----------------------- 240 (491)
T ss_pred --cc-----------------c-------------------------------c--c-----------------------
Confidence 00 0 0 0
Q ss_pred ccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecce
Q 000523 800 NVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVS 879 (1445)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs 879 (1445)
. . ... + .+..+.++|+++.. +.+|+|||
T Consensus 241 ----------~----------------~-----~~~-----~-~~~~i~~~~l~~~~---------------~~~l~~vs 268 (491)
T PRK10982 241 ----------D----------------K-----ENK-----P-GEVILEVRNLTSLR---------------QPSIRDVS 268 (491)
T ss_pred ----------c----------------c-----cCC-----C-CCcEEEEeCccccc---------------Ccccceee
Confidence 0 0 000 0 01136677776541 13899999
Q ss_pred EEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCCC---CCCCCCHHHH
Q 000523 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDI---HSPFVTIYES 952 (1445)
Q Consensus 880 ~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~---~~~~lTv~E~ 952 (1445)
+.|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+.. +++.+|+.++
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHh
Confidence 9999999999999999999999999999875 4589999999776431 12455899999853 5778888777
Q ss_pred HHHHHH--hcCCCC-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000523 953 LLFSAW--LRLSPE-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1445)
Q Consensus 953 l~f~~~--lr~~~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsg 1028 (1445)
..+... ...... ......++.++++++.+++. +..+.. +..|||||||||+||++|+.+|+||+|||||+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 347 SLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred eehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 433211 000001 11223345678889999985 344554 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCC
Q 000523 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~ 1085 (1445)
||+.++..+++.|+++.+.|+|||++||+++ ++.+.+|++++|++ |+++..++..
T Consensus 422 LD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 422 IDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999888999999999986 57889999999986 7888777654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=591.95 Aligned_cols=214 Identities=19% Similarity=0.302 Sum_probs=166.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|..+. ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 377888887763 23599999999999999999999999999999999996531 1479999999764
Q ss_pred Cc----ccccceEEEeccCCCCCC--CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000523 926 KQ----ETFARISGYCEQNDIHSP--FVTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 996 (1445)
Q Consensus 926 ~~----~~~~~~~gyv~Q~d~~~~--~lTv~E~l~f~~~l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1445)
.. ...++.+||++|++.+.. ..|+++++.+.... ....... ...++.++++++.++|.+ ..+.. +
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~ 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----F 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----h
Confidence 21 123467999999875543 35677766543211 1111111 223456889999999986 66665 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHH-hhceEeEEec
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 1074 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~Hqps~~i~~-~fD~v~~l~~ 1074 (1445)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++| .|||+++|+++ ++.+ .+|++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5799999999999999999999999999999999999999999999998765 46999999986 4655 5899999986
Q ss_pred CcEEEEE
Q 000523 1075 GGQEIYV 1081 (1445)
Q Consensus 1075 gG~~~y~ 1081 (1445)
|+++..
T Consensus 479 -G~i~~~ 484 (490)
T PRK10938 479 -GDIYRY 484 (490)
T ss_pred -CceEEe
Confidence 666654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-58 Score=575.88 Aligned_cols=201 Identities=20% Similarity=0.283 Sum_probs=163.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-+.++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 478889887763 2469999999999999999999999999999999999875 4589999854 1
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000523 926 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1003 (1445)
..+||++|+. .+++.+||.|++.+....+. .... ....+++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 67788999999987643221 1111 122456899999964 44554 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEE-EEc
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1082 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~-y~G 1082 (1445)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. .|||++||++. .+.+.+|++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 48999999986 5778899999998767776 555
Q ss_pred C
Q 000523 1083 P 1083 (1445)
Q Consensus 1083 ~ 1083 (1445)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-58 Score=509.60 Aligned_cols=470 Identities=24% Similarity=0.323 Sum_probs=362.5
Q ss_pred ccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCCCcCcc-------ceEEEEcC
Q 000523 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFVPQ-------RTAAYISQ 233 (1445)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 233 (1445)
....++++|||.+++||.+||+|.||||||-..+.+.|+++.. ...+|+|.++|+++-....+ ..|+.++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3456999999999999999999999999999999999999763 35589999999997544322 47999999
Q ss_pred CC--CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccc
Q 000523 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1445)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1445)
++ .+.|-.|+..-+.-..+++.. .....++.++-++|+..|+++.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------------------------------~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------------------------------LSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------------------------------ccHHHHHHHHHHHHHHcCCCch
Confidence 97 466767777766555444310 1112234567788999999876
Q ss_pred ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000523 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1445)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1445)
...+ +.++..|||||||||.||.||+.+|++|+-||||++||.....+|.+.|+++-. .-+..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~-~~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA-ELGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH-HhCcEEEEEeccHHHHHHh
Confidence 5432 467788999999999999999999999999999999999999999999999865 4567777899999999999
Q ss_pred cCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhh
Q 000523 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVG 471 (1445)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1445)
+|+|+||.+|+++++|+.+++.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999998876632 1110 000
Q ss_pred hhhHHhhcCCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q 000523 472 QKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551 (1445)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~ 551 (1445)
|.++. ..+.
T Consensus 255 ---------------------------------------r~Ll~-----------------------------aeP~--- 263 (534)
T COG4172 255 ---------------------------------------RKLLA-----------------------------AEPS--- 263 (534)
T ss_pred ---------------------------------------HHHHh-----------------------------cCCC---
Confidence 00000 0000
Q ss_pred cccchhhHHHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCC
Q 000523 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631 (1445)
Q Consensus 552 ~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~ 631 (1445)
T Consensus 264 -------------------------------------------------------------------------------- 263 (534)
T COG4172 264 -------------------------------------------------------------------------------- 263 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHH
Q 000523 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 711 (1445)
Q Consensus 632 ~~~rff~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al 711 (1445)
T Consensus 264 -------------------------------------------------------------------------------- 263 (534)
T COG4172 264 -------------------------------------------------------------------------------- 263 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCcccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceecccccc
Q 000523 712 VANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791 (1445)
Q Consensus 712 ~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~ 791 (1445)
|
T Consensus 264 -----------------------------g-------------------------------------------------- 264 (534)
T COG4172 264 -----------------------------G-------------------------------------------------- 264 (534)
T ss_pred -----------------------------C--------------------------------------------------
Confidence 0
Q ss_pred ccccccCCccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCc
Q 000523 792 EQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 871 (1445)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1445)
. . .+ ..+..|.-+..+|+...++.++.+-.. ..+.
T Consensus 265 -------~----------~--~p------------------------~~~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~ 299 (534)
T COG4172 265 -------D----------P--PP------------------------LPEDAPVLLEVEDLRVWFPIKGGFLRR--TVDH 299 (534)
T ss_pred -------C----------C--CC------------------------CCCCCCceEEecceEEEEecCCccccc--cchh
Confidence 0 0 00 000011223444444333332211000 1123
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc------ccccceEEEeccCCC--C
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETFARISGYCEQNDI--H 943 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~--~ 943 (1445)
..++++||++.++||.+||+|.||||||||=.+|.+... .+|+|.++|.++.. ..+++.+-.|+||+. +
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 569999999999999999999999999999999999875 35999999988753 235677889999975 7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 000523 944 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1445)
Q Consensus 944 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illL 1022 (1445)
.|.+||.|-+.-+.....+ ..+..++++++.++|+.+||++- ++.. +..+|||||||++|||||+-+|++++|
T Consensus 377 sPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 8999999988877665543 46778899999999999999864 2322 578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1023 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|||||.||-.-+.+|.++|+++.+ .|.+-++++||... +-.+||+|++|++ |++|..||.
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-CEEeeeCCH
Confidence 999999999999999999999965 48999999999874 7889999999985 899999996
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=577.09 Aligned_cols=198 Identities=18% Similarity=0.261 Sum_probs=164.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488899988763 2359999999999999999999999999999999999865 45899999873
Q ss_pred CcccccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 000523 926 KQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 1002 (1445)
+.+||++|+.. +.+.+|++|++.+. ... . ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~---~~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQW---RQE-G----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHh---ccC-C----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 45679999998642 111 1 1134577899999984 555655 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEE-EE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1081 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~-y~ 1081 (1445)
||||++||++|+.+|+||+|||||+|||+.+...+++.|+++ +.|||++||++. .+.+.+|++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999986 459999999986 57788999999986 5666 87
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=569.67 Aligned_cols=201 Identities=18% Similarity=0.273 Sum_probs=163.6
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.+. ++.+|+|||+.|++||+++|+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 478888887763 2469999999999999999999999999999999999865 4589999854 1
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000523 926 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1003 (1445)
..+||++|+. .+++.+||.|++.+...... .... +..+.++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 47788999999988642211 1111 123457899999864 44554 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEE-EEc
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1082 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~-y~G 1082 (1445)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. .|||++||++. .+...+|++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999986 5778899999998767776 555
Q ss_pred C
Q 000523 1083 P 1083 (1445)
Q Consensus 1083 ~ 1083 (1445)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=556.22 Aligned_cols=197 Identities=22% Similarity=0.346 Sum_probs=160.3
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 478889887763 2469999999999999999999999999999999999875 45899998741
Q ss_pred CcccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHH
Q 000523 926 KQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 1002 (1445)
..+||++|+. .+.+..|+.+++.- . .. ...+..+.++++.+++.+ ..+.. +..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHH
Confidence 2589999974 34456677776531 1 11 112345788999999963 45555 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEE-EE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1081 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~-y~ 1081 (1445)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||+++||+. .+...+|++++|++ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999986 47788999999986 6776 88
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-55 Score=557.03 Aligned_cols=202 Identities=23% Similarity=0.326 Sum_probs=163.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478888887763 2469999999999999999999999999999999999865 45899998 4321
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHH
Q 000523 926 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGq 1003 (1445)
.+||++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..+.. ++.|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTP-----VKALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHH
Confidence 489999975 5788899999998753211 0111 123467888888885 345554 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe-cCcEEEEEc
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-RGGQEIYVG 1082 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~-~gG~~~y~G 1082 (1445)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...+|++++|+ +|.-..|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999986 4778899999997 554456666
Q ss_pred CC
Q 000523 1083 PL 1084 (1445)
Q Consensus 1083 ~~ 1084 (1445)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 64
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-55 Score=546.48 Aligned_cols=211 Identities=20% Similarity=0.235 Sum_probs=172.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|+++.++ + ..|+++|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 367788876652 1 24899999999999999999999999999999999876 458999885
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..+.. +..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHH
Confidence 1489999998888899999999875211 111 12467899999998877766 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 4778899999996 377777764
Q ss_pred CCc---hhhHHHHHHhC
Q 000523 1085 GRH---SCHLISYFEAI 1098 (1445)
Q Consensus 1085 ~~~---~~~~~~yF~~~ 1098 (1445)
... ...+-.|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 321 12345566766
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-54 Score=508.04 Aligned_cols=449 Identities=23% Similarity=0.370 Sum_probs=348.1
Q ss_pred ccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCC
Q 000523 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (1445)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1445)
...++|+|||+++++||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++..-..++ .-|+.|.|+..+.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 3456999999999999999999999999999999999999999 99999999988765553 4689999999999
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
|++||.||+-++...... ... .+..+.+..+..+|+.+|++...++.|++
T Consensus 96 p~LsVaeNifLgre~~~~---~g~---------------------------id~~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 96 PNLSVAENIFLGREPTRR---FGL---------------------------IDRKAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CCccHHHHhhcccccccC---CCc---------------------------cCHHHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 999999999887543220 000 01122334567789999997557888775
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
||+||||-|.|||||..++++++|||||++|+...+..+++.++++. ..+..+|.|+|..+|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999975 45777788999999999999999999
Q ss_pred cCCeEEEecCh-hHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHh
Q 000523 399 SDGQIVYQGPR-ELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477 (1445)
Q Consensus 399 ~~G~iv~~G~~-~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1445)
.||+.+..++. .+.- .+++.
T Consensus 219 RDG~~v~~~~~~~~~~--------------------------------------------~~~lv--------------- 239 (500)
T COG1129 219 RDGRVVGTRPTAAETS--------------------------------------------EDELV--------------- 239 (500)
T ss_pred eCCEEeeecccccCCC--------------------------------------------HHHHH---------------
Confidence 99999876652 2110 00000
Q ss_pred hcCCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchh
Q 000523 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (1445)
Q Consensus 478 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~ 557 (1445)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 000523 558 AGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637 (1445)
Q Consensus 558 ~g~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff 637 (1445)
-.|+|
T Consensus 240 ------------------------------------------------------------------~~MvG--------- 244 (500)
T COG1129 240 ------------------------------------------------------------------RLMVG--------- 244 (500)
T ss_pred ------------------------------------------------------------------HHhhC---------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhc
Q 000523 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717 (1445)
Q Consensus 638 ~~~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~ 717 (1445)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceecccccccccccc
Q 000523 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRI 797 (1445)
Q Consensus 718 ~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 797 (1445)
..... . | +
T Consensus 245 -r~~~~------------------~------------------------------~--~--------------------- 252 (500)
T COG1129 245 -RELED------------------L------------------------------F--P--------------------- 252 (500)
T ss_pred -cchhh------------------h------------------------------c--c---------------------
Confidence 00000 0 0 0
Q ss_pred CCccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeec
Q 000523 798 GGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNG 877 (1445)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 877 (1445)
. . ... ...+..+++++++.. ..++|
T Consensus 253 -----------------------------~--~-~~~------~~~~~~l~v~~l~~~-----------------~~~~d 277 (500)
T COG1129 253 -----------------------------E--P-PEE------GIGEPVLEVRNLSGG-----------------GKVRD 277 (500)
T ss_pred -----------------------------c--c-ccc------CCCCcEEEEecCCCC-----------------CceeC
Confidence 0 0 000 000112444444211 15789
Q ss_pred ceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHH
Q 000523 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTIY 950 (1445)
Q Consensus 878 vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~ 950 (1445)
|||++++||++||-|-=|||+|-|+++|.|... ...|+|.+||.+.... ..+.-++|||.|. -++..++|.
T Consensus 278 vSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~ 355 (500)
T COG1129 278 VSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIA 355 (500)
T ss_pred ceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHH
Confidence 999999999999999999999999999999654 3589999999976542 3455689999984 467889999
Q ss_pred HHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000523 951 ESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1445)
Q Consensus 951 E~l~f~~~lr~~~--~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTs 1027 (1445)
||+.++...+... -.+....++.+++..+.+++... .+.. +..||||++|||.|||.|..+|+||+|||||.
T Consensus 356 ~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTR 430 (500)
T COG1129 356 ENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430 (500)
T ss_pred HheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCc
Confidence 9998873323221 24455556678889999887532 2222 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
|+|..+..+|.++|++++++|++||+++-+.. |+..+||||++|++ |+++-.
T Consensus 431 GIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e 482 (500)
T COG1129 431 GIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGE 482 (500)
T ss_pred CcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999875 79999999999985 787653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-53 Score=536.13 Aligned_cols=200 Identities=18% Similarity=0.260 Sum_probs=157.8
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.+. +++.+|+|+|+.|++|++++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 478899988763 12359999999999999999999999999999999999875 45799998652
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 1004 (1445)
..+||++|+. ...+++.++..+......+ ... ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 2445666654322111111 111 234678999999974 44444 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEE-EEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~-y~G~ 1083 (1445)
|||+||++|+.+|++|+|||||+|||+.+...+++.|++. +.|||++||++. .+...+|++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 349999999986 47788999999985 6777 7776
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=511.50 Aligned_cols=218 Identities=27% Similarity=0.322 Sum_probs=172.2
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
+++|+|+|+++.+|+.++|||+||||||||||+|+|.+.|+ +|+|...+. -.++|++|++...+..||.
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKTVL 84 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCccHH
Confidence 45999999999999999999999999999999999999999 999998652 3699999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHH---HHHHH-HhhhhhhHhHHHHHHHHHcCCcccccccccccc
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID---VYMKA-IATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~---~~~~~-~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1445)
+.+.-+..- .++...+..... ...++++.. .+... ...++.+.+.+++.+|..||++.. ++.++
T Consensus 85 ~~v~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~--- 152 (530)
T COG0488 85 DYVIEGFGE-----LRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS--- 152 (530)
T ss_pred HHHHhhhHH-----HHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh---
Confidence 999865421 122222221111 112222111 11111 233456677889999999999876 65555
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
.||||||.||+||++|+.+|++|+||||||+||..+..++.+.|++ ..+ ++|.++|++..+.+.|++|+-++.
T Consensus 153 --~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 153 --SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred --hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 5999999999999999999999999999999999999999999986 234 666689999999999999999999
Q ss_pred CeE-EEecChhHH
Q 000523 401 GQI-VYQGPRELV 412 (1445)
Q Consensus 401 G~i-v~~G~~~~~ 412 (1445)
|++ .|.|.++..
T Consensus 226 g~l~~y~Gny~~~ 238 (530)
T COG0488 226 GKLTPYKGNYSSY 238 (530)
T ss_pred CceeEecCCHHHH
Confidence 987 577766644
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=461.52 Aligned_cols=457 Identities=22% Similarity=0.315 Sum_probs=354.2
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1445)
...+++|||+++++||+.||+|.||||||||+++|.|.++|+ +|+|.++|+++.-..|+ .-||.|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 456999999999999999999999999999999999999999 99999999998655553 46899999999999
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
++||.||+..+..-... .+ .+..+...+++++.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~------------------------------~~~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GL------------------------------IDRRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-cc------------------------------cCHHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999987632100 00 00112334577888999999888888876
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
||=||||||.|-++|+.+|++|+|||||+-|-+....++++.|+++.. .+.+||.|+|-..|+.+.|||+.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999864 35566669999999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000523 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1445)
+|+++-.-++ . .+ .+.+++++.
T Consensus 215 ~Gkvvgt~~~--~--------------~~---------------------------~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP--V--------------AE---------------------------TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC--C--------------CC---------------------------CCHHHHHHH---------------
Confidence 9998633210 0 00 000000000
Q ss_pred CCcccccccccccccccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccchhhH
Q 000523 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1445)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gt~f~~~~~~~~~~~~~~~~~g 559 (1445)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhHHHhhhcCCcCchhHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 000523 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1445)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~ 639 (1445)
|+|
T Consensus 237 ------------------------------------------------------------------MvG----------- 239 (501)
T COG3845 237 ------------------------------------------------------------------MVG----------- 239 (501)
T ss_pred ------------------------------------------------------------------hcC-----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHcHHHHHHHHHHHHHhcCC
Q 000523 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1445)
Q Consensus 640 ~~~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~ 719 (1445)
.
T Consensus 240 -------------------------------------------------------------------------------~ 240 (501)
T COG3845 240 -------------------------------------------------------------------------------R 240 (501)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred cccccccCCccccHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeccccccccccccCC
Q 000523 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1445)
Q Consensus 720 ~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~~~~~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1445)
. +.. +
T Consensus 241 ~---------------v~~-------------------------------------~----------------------- 245 (501)
T COG3845 241 E---------------VVL-------------------------------------R----------------------- 245 (501)
T ss_pred c---------------ccc-------------------------------------c-----------------------
Confidence 0 000 0
Q ss_pred ccccccCCCCCCccccccccchhhhhhhhhcCCCCCCCCcccCCCceeEEecceeeeecchhhhhccccCCceEEeecce
Q 000523 800 NVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVS 879 (1445)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs 879 (1445)
.. . .... | .+..++++|++...+. ....+++||
T Consensus 246 ----------~~---------------~----~~~~-----p-g~~vL~V~~L~v~~~~------------~~~~v~~vs 278 (501)
T COG3845 246 ----------VV---------------K----PPST-----P-GEVVLEVEDLSVKDRR------------GVTAVKDVS 278 (501)
T ss_pred ----------cc---------------c----CCCC-----C-CCeEEEEeeeEeecCC------------CCceeeeee
Confidence 00 0 0000 0 0124666776644321 135799999
Q ss_pred EEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC-C---cc-cccceEEEeccCCC---CCCCCCHHH
Q 000523 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK-K---QE-TFARISGYCEQNDI---HSPFVTIYE 951 (1445)
Q Consensus 880 ~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~-~---~~-~~~~~~gyv~Q~d~---~~~~lTv~E 951 (1445)
|++++||++||.|..|-|-+.|+.+|+|..+. ..|+|.++|.+. . .. ..+.-+||||+|.. +.+.+|+.|
T Consensus 279 ~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~e 356 (501)
T COG3845 279 FEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAE 356 (501)
T ss_pred eEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHH
Confidence 99999999999999999999999999997653 359999999986 2 22 23346899999864 467899999
Q ss_pred HHHHHHHhcC----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000523 952 SLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1445)
Q Consensus 952 ~l~f~~~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTs 1027 (1445)
|+.+...-+. ..-.+....+++..++++.++........ ..+.||||++||+-+||+|..+|++|+..+||.
T Consensus 357 N~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTr 432 (501)
T COG3845 357 NLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTR 432 (501)
T ss_pred HhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCc
Confidence 9987654221 11245566777889999999886322111 146899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCC
Q 000523 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~ 1085 (1445)
|||..+.+.|.+.|.+.++.|+.|++++-+.+ ++++++||+.+|.+ |+++...+..
T Consensus 433 GLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred cccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 99999999999999999999999999999997 79999999999985 7998877764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=370.98 Aligned_cols=220 Identities=26% Similarity=0.419 Sum_probs=187.6
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc----CccceEEEEcCCCCCCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----VPQRTAAYISQHDNHIG 239 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~d~~~~ 239 (1445)
..++|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|+++... ..++.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 456999999999999999999999999999999999999999 99999999765321 23578999999999999
Q ss_pred CCCHHHHHHHhHHh-cCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 240 EMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
++||.||+..+... ++ ...++++.++.++|+.+||.+.+|.+
T Consensus 91 HlTvleNv~lap~~v~~----------------------------------~~k~eA~~~A~~lL~~VGL~~ka~~y--- 133 (240)
T COG1126 91 HLTVLENVTLAPVKVKK----------------------------------LSKAEAREKALELLEKVGLADKADAY--- 133 (240)
T ss_pred cchHHHHHHhhhHHHcC----------------------------------CCHHHHHHHHHHHHHHcCchhhhhhC---
Confidence 99999999987421 11 11223445677889999999998865
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+..|||||||||+|||||+.+|+++++|||||+|||....++.+.+++++. . +.+.+.++|.+..+.+.+|||+.|
T Consensus 134 --P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-e-GmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 134 --PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred --ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-c-CCeEEEEechhHHHHHhhheEEEe
Confidence 456999999999999999999999999999999999999999999999985 3 455555889999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHh
Q 000523 399 SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~e 435 (1445)
++|+++.+|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999876 345666666677654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=368.51 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=189.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|++.++ +...+|+|||++|++||+++|+|||||||||||+||.+... +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 5677777665 35689999999999999999999999999999999999876 56899999996543
Q ss_pred ----cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 927 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 927 ----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
-...|+.+|+|+|+..+||++||.||+..+...- ...++++.++...+.|+.+||.+.+|.. +..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2346788999999999999999999999875432 2345667777788999999999999887 4679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
|||||+|||||+.+|+++++|||||.|||+...++.+.+++++++|.|.||+||.... .-+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999875 6788999999985 8999999
Q ss_pred CC
Q 000523 1083 PL 1084 (1445)
Q Consensus 1083 ~~ 1084 (1445)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 76
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=402.16 Aligned_cols=203 Identities=20% Similarity=0.260 Sum_probs=156.7
Q ss_pred CceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCc
Q 000523 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 923 (1445)
Q Consensus 844 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1445)
|..+.++|+++.++. +..++++++|-|.+++.+|++||||+|||||||++.|... +..|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 345788999887752 2258999999999999999999999999999999999876 45677654332
Q ss_pred cCCcccccceEEEeccC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 924 PKKQETFARISGYCEQN--DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 924 ~~~~~~~~~~~gyv~Q~--d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
. .+++..|+ +.+.-..++-|+++=. ...+.+.+.+..++..+||+...+... .+.||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVP----MSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccc----hhhccc
Confidence 2 12233333 2222335666655421 111234455778999999985444331 578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
|||+||..|+.++..|.||+|||||+|||..+...+-++|.+. ..+||+++||-.. |-...+++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999999876 4689999999864 78889999999999999999
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=373.18 Aligned_cols=224 Identities=29% Similarity=0.375 Sum_probs=194.2
Q ss_pred ccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCC
Q 000523 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDN 236 (1445)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1445)
...++|+|||++|++|++.+|+|+||||||||++++.++..|+ +|+|.++|.++..+.. ++.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999999 9999999988876543 478999999999
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1445)
++...||.||+.|..+..+.. ..+.+.++.++|+.+||++.+|.+
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccC-
Confidence 999999999999998776531 123345788899999999888754
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
+.+|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++-++ -+.+|+.++|.++-+-+.||||.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~-lglTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH-cCCEEEEEechHHHHHHHhhhhe
Confidence 4569999999999999999999999999999999999999999999998664 46666668999999999999999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhhc
Q 000523 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVT 437 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~ 437 (1445)
+|++|+++++|+..++. ..|.+.-...|+.+..
T Consensus 214 vm~~G~lvE~G~v~~vF--------~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEVF--------ANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHhh--------cCcchHHHHHHHHhhc
Confidence 99999999999998873 4566555556665544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=389.58 Aligned_cols=223 Identities=30% Similarity=0.430 Sum_probs=193.4
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|++..+. .++.+|+||||+|++||++||+||||||||||||+|+|... +.+|+|.++|.+..
T Consensus 5 i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCc
Confidence 45666665552 13679999999999999999999999999999999999887 46899999998865
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 927 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 927 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. ...+++++++++.++|.+..+.. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 4567889999999999999999999999999987543 44556799999999999855544 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+||+||+++|+++||||||+|||+.++..+++.|++++++| +||+++||+++ ++...||++++|++ |++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999997 68888999999985 89999997
Q ss_pred CCCchhhHHHHHHh
Q 000523 1084 LGRHSCHLISYFEA 1097 (1445)
Q Consensus 1084 ~~~~~~~~~~yF~~ 1097 (1445)
. .++...+..
T Consensus 221 ~----~~l~~~~~~ 230 (293)
T COG1131 221 P----EELKEKFGG 230 (293)
T ss_pred H----HHHHHhhcc
Confidence 5 455555544
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=360.11 Aligned_cols=210 Identities=27% Similarity=0.413 Sum_probs=185.2
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGE 240 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1445)
.+.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.++ ++.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 345999999999999999999999999999999999999999 9999999999887654 6899999999999999
Q ss_pred CCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccc
Q 000523 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1445)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1445)
+||.||+.+--.+++.. .++.+.+++++|+.+||+.. ...++.
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 99999999877666532 12334578999999999752 123577
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
+..|||||+|||.+||||+.+|++++||||+++||+-++.++.+-++++-+. -+++||.++|+.+|++.++|||.+|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~-l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE-LGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH-hCCEEEEEecCHHHHHhhhceEEEecC
Confidence 7889999999999999999999999999999999999999999998887554 455666689999999999999999999
Q ss_pred CeEEEecChhHHHH
Q 000523 401 GQIVYQGPRELVLE 414 (1445)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1445)
|+++..+++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=411.71 Aligned_cols=255 Identities=22% Similarity=0.379 Sum_probs=209.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC---CcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL---PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1445)
..+..-..+|+++.+|..|. +. .-|... .+.+|+|+||+|.|..
T Consensus 431 lmkgvGAs~rvFel~dr~P~-----i~----~~G~~~p~~~~G~IeF~~VsFaYP~------------------------ 477 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPR-----IP----LTGTLAPDHLQGVIEFEDVSFAYPT------------------------ 477 (716)
T ss_pred HHHhcchHHHHHHHhccCCC-----CC----CCCccccccccceEEEEEeeeecCC------------------------
Confidence 45566677899998887775 32 224433 4678999999999843
Q ss_pred hhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 000523 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1445)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv 231 (1445)
+++.+||+|+|++|+|||.|||||||||||||+.++|..+++|+ +|+|++||+|++++++ ++.+|+|
T Consensus 478 -------Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 478 -------RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred -------CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeee
Confidence 23456999999999999999999999999999999999999999 9999999999998876 4889999
Q ss_pred cCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccc
Q 000523 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1445)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1445)
.|+|.+|. .||+|||.|+.. ....+.+.++++...+++ -+.+++++
T Consensus 548 ~QEPvLFs-~sI~eNI~YG~~----~~t~e~i~~AAk~ANah~-----------------------------FI~~~p~g 593 (716)
T KOG0058|consen 548 GQEPVLFS-GSIRENIAYGLD----NATDEEIEAAAKMANAHE-----------------------------FITNFPDG 593 (716)
T ss_pred eccceeec-ccHHHHHhcCCC----CCCHHHHHHHHHHhChHH-----------------------------HHHhCccc
Confidence 99998776 599999999864 122333333333322211 15679999
Q ss_pred ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000523 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1445)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1445)
+||.||+++. .||||||||++|||||+++|+||||||.||+||+.++..+.+.|.+..+ ++|+++ |.| +-++.+.
T Consensus 594 Y~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IAH-RLSTV~~ 668 (716)
T KOG0058|consen 594 YNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IAH-RLSTVRH 668 (716)
T ss_pred cccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Eeh-hhhHhhh
Confidence 9999999887 5999999999999999999999999999999999999999999988653 344444 444 5688899
Q ss_pred cCeEEEecCCeEEEecChhHHHH
Q 000523 392 FDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1445)
+|+|+++++|++++.|+++|+++
T Consensus 669 Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 669 ADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred ccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999975
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=372.34 Aligned_cols=210 Identities=34% Similarity=0.468 Sum_probs=180.8
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc---ceEEEEcCCCCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEM 241 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1445)
+++|+|+|+++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ +.+|||||.....+.+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 35999999999999999999999999999999999999998 99999999999877653 7899999998888999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+|-+.++..-.. +. .. ...++....++..|+.+|+.+.++..+.
T Consensus 92 tV~d~V~~GR~p~~-~~-----------------~~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~---- 137 (258)
T COG1120 92 TVYELVLLGRYPHL-GL-----------------FG------------RPSKEDEEIVEEALELLGLEHLADRPVD---- 137 (258)
T ss_pred EEeehHhhcCCccc-cc-----------------cc------------CCCHhHHHHHHHHHHHhCcHHHhcCccc----
Confidence 99999998853210 00 00 0111223367888999999998886654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
.|||||||||.|||||+++|++|+||||||+||...+.++++.++++.+.. +.+||.+.|+...+.++||++++|++|
T Consensus 138 -~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 138 -ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred -ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999999998644 555566788999999999999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
+++.+|++++++
T Consensus 216 ~i~a~G~p~evl 227 (258)
T COG1120 216 KIVAQGTPEEVL 227 (258)
T ss_pred eEEeecCcchhc
Confidence 999999998875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=367.02 Aligned_cols=218 Identities=23% Similarity=0.332 Sum_probs=190.9
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+++++++..+... ..+...+|+|||++|++||++||+|.||||||||++++.+... +.+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 4567776444311 1123579999999999999999999999999999999999876 56999999997654
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
. ...|+.+|+++|+..++...||+||+.|...+.. .++++++++|.++++.+||.+..+.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 2467889999999999999999999999987764 56788899999999999999888876 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
|||||||+|||||+.+|+||++|||||.|||.+...|.+.|+++.++ |.||+++||+++. +.+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999764 9999999999974 8889999999985 8999
Q ss_pred EEcCC
Q 000523 1080 YVGPL 1084 (1445)
Q Consensus 1080 y~G~~ 1084 (1445)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99986
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=365.22 Aligned_cols=217 Identities=26% Similarity=0.428 Sum_probs=185.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.++ .+ .+|+|||++|++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 578999999885 22 59999999999999999999999999999999999776 4689999999886
Q ss_pred CcccccceEEEeccCCCC--CCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQETFARISGYCEQNDIH--SPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~--~~~lTv~E~l~f~~~lr~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.+..-+..+|||||...+ ..-+||+|-+..+..-+.. .... ++.++.++++|+.+|+.+++|..+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 654435679999996422 2348999999887443321 1122 3346779999999999999999865 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
||+|||.|||||+++|++|+|||||+|+|+.++..++++|+++.++|+||++++||++ .+.+.||+++.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999998 5899999999997 589999
Q ss_pred cCCCC
Q 000523 1082 GPLGR 1086 (1445)
Q Consensus 1082 G~~~~ 1086 (1445)
||+.+
T Consensus 220 G~~~~ 224 (254)
T COG1121 220 GPPEE 224 (254)
T ss_pred cChhh
Confidence 99854
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=353.96 Aligned_cols=231 Identities=26% Similarity=0.376 Sum_probs=198.6
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+++++++.+. +.+.+|+|||++|++||+++||||||+||||||+.|.|..+ +.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 47788887665 45789999999999999999999999999999999999887 5689999999886
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCc
Q 000523 926 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSG 998 (1445)
Q Consensus 926 ~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 998 (1445)
.+ ...++.+|+++|+-.+|..+||+||+.|.. |...+.+++..++.+..-++.+||... .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 53 135678999999999999999999999864 333456677778888888999999876 5544 578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
||||+|||++||||++.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999875 999999999987 59999999999996 89
Q ss_pred EEEEcCCCC----chhhHHHHHHhCCC
Q 000523 1078 EIYVGPLGR----HSCHLISYFEAIPG 1100 (1445)
Q Consensus 1078 ~~y~G~~~~----~~~~~~~yF~~~~g 1100 (1445)
+++.|+..+ .---+.+||....+
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 999999742 11236778877643
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=406.22 Aligned_cols=216 Identities=22% Similarity=0.358 Sum_probs=186.9
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++++|++..++. +++.+|+|+|+.+++||+++|+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46888998877631 23569999999999999999999999999999999999876 458999999988
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 925 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 925 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.++|.+..+..+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999876653 223344566899999999998887764 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
|||||+||+||+.+|+||+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999986 57788999999986 7999999
Q ss_pred CC
Q 000523 1083 PL 1084 (1445)
Q Consensus 1083 ~~ 1084 (1445)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 85
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=381.55 Aligned_cols=217 Identities=30% Similarity=0.440 Sum_probs=193.3
Q ss_pred eeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc-ceEEEEcCCCCCCCCCCHHH
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1445)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999999 99999999999998875 88999999999999999999
Q ss_pred HHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCC
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1445)
|+.|+.+.++.. .++.+.+++++.+.|+|++..|.. +++||
T Consensus 95 Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 999999876531 122345688899999999888754 55799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1445)
Q Consensus 326 GGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1445)
|||||||++||||+.+|++++||||+|.||...+..+..-|+++.+ .-++++|.++|+..|+..++|||.+|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~-~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH-hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999988644 455666678999999999999999999999999
Q ss_pred ecChhHHHHHHHhcCCCCCCCCChhHHHH
Q 000523 406 QGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (1445)
Q Consensus 406 ~G~~~~~~~~f~~lG~~cp~~~~~adfl~ 434 (1445)
.|++.++. ..|...-+|+|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4577777777754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=367.99 Aligned_cols=218 Identities=27% Similarity=0.402 Sum_probs=189.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++.+|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367889988874 4679999999999999999999999999999999999776 4589999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. +.+++.++|+||.......+||+|.+.++..-.... ....++.++.++++++.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 457889999999998888999999999875432211 1122334457899999999999999874 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||+.|||||+++|+||+||||||+||...+.+++++++++++ +|+|||+++||++. ...++|++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999984 59999999999985 7789999999985 89999
Q ss_pred EcCCC
Q 000523 1081 VGPLG 1085 (1445)
Q Consensus 1081 ~G~~~ 1085 (1445)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99974
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=382.99 Aligned_cols=223 Identities=30% Similarity=0.436 Sum_probs=196.8
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCH
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1445)
..+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+..+||+|||
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 45999999999999999999999999999999999999999 9999999999998877 4789999999999999999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.|+.+.++... ..+.+.+++++|+.++|++.++ +.+..
T Consensus 95 ~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~-----R~p~q 136 (352)
T COG3842 95 EENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFAD-----RKPHQ 136 (352)
T ss_pred HHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhh-----hChhh
Confidence 999999987432110 1123457888999999998766 44557
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
|||||||||+|||||+.+|++|+||||.|+||..-+.++..-|+++.+.. +.+.|.++|+..|+..++|||.+|++|+|
T Consensus 137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCce
Confidence 99999999999999999999999999999999999999999999887655 56666689999999999999999999999
Q ss_pred EEecChhHHHHHHHhcCCCCCCCCChhHHHHhhc
Q 000523 404 VYQGPRELVLEFFASMGFRCPKRKGVADFLQEVT 437 (1445)
Q Consensus 404 v~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev~ 437 (1445)
...|+++++ |..|...-+|+|+.+..
T Consensus 216 ~Q~gtP~ei--------Y~~P~~~fVA~FiG~~N 241 (352)
T COG3842 216 EQVGTPEEI--------YERPATRFVADFIGESN 241 (352)
T ss_pred eecCCHHHH--------hhCcchHHHHHHhCcce
Confidence 999999998 45788888899987543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=357.21 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=180.3
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++++++++. ...+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 356777777663 2579999999999999999999999999999999999887 5689999999887
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
.. ....+|||+|++.++|.+||+||+.++...+. .++++++++++++++.+||.+..+.. +..|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 34568999999999999999999999877654 34556667899999999999999887 5689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
||+|||||+.+|+||+||||++.||+.|+..+++.|.++.+ .++|||++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999865 5899999999997 677889999999864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=355.16 Aligned_cols=194 Identities=27% Similarity=0.404 Sum_probs=170.7
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
..+|+|+|++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++ ..+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHH
Confidence 45999999999999999999999999999999999999999 99999999987 34567899999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+...++... .+...+++++|+..||.+..|. .+..|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~-----~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDK-----YPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhc-----Ccccc
Confidence 99999987654211 1122357888999999988774 55679
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC--Ce
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQ 402 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~--G~ 402 (1445)
||||||||+|||||+.+|++|+||||+++||.-|+.++.+.|.++.+.. +.+|+.++|+-+|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999998888754 55666689999999999999999998 44
Q ss_pred E
Q 000523 403 I 403 (1445)
Q Consensus 403 i 403 (1445)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 4
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=348.22 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=179.3
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1445)
+.||+|||++|++||+++|+|||||||||||++|.|+++|+ +|+|.++|+++.+... ++++|+++|+-.+|
T Consensus 21 ~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALF 97 (263)
T COG1127 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97 (263)
T ss_pred EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccc
Confidence 45999999999999999999999999999999999999999 9999999999876543 46799999999999
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
..+||+||+.|..+-... +|+ ...+..+..-|+..||+.. +.+
T Consensus 98 ssltV~eNVafplre~~~-------------------lp~--------------~~i~~lv~~KL~~VGL~~~----~~~ 140 (263)
T COG1127 98 SSLTVFENVAFPLREHTK-------------------LPE--------------SLIRELVLMKLELVGLRGA----AAD 140 (263)
T ss_pred cccchhHhhheehHhhcc-------------------CCH--------------HHHHHHHHHHHHhcCCChh----hhh
Confidence 999999999997643210 111 1122345556788899754 345
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
.++..||||+|||+++|||++.+|+++|+||||+||||.++..+.+.++++.... +.++++++|+.++++..+|++++|
T Consensus 141 ~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 141 LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhhhceEEEE
Confidence 6777899999999999999999999999999999999999999999999887654 555666899999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000523 399 SDGQIVYQGPRELVLE 414 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1445)
.+|+|+..|+++++.+
T Consensus 220 ~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 220 ADGKVIAEGTPEELLA 235 (263)
T ss_pred eCCEEEEeCCHHHHHh
Confidence 9999999999999864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=350.70 Aligned_cols=213 Identities=26% Similarity=0.366 Sum_probs=189.4
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++|+|++..+. ++.+++|+|++|++||+++++|||||||||+|++|.+..+ +.+|+|.|||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 46777776553 4579999999999999999999999999999999999887 56999999999875
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 000523 927 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSg 1001 (1445)
. ..+||.+|||-|.-.+||++||.||+.+--.+. ..++++.+++++|+|+.+||.+ +.+.. +..|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457899999999999999999999998866554 4677888899999999999975 66665 578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
||+|||.+||||+++|+||+||||++.|||-++..+++-++++.++ |+|||++|||.+ +.+.+.||+.+|+ +|+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999998764 999999999987 6889999999998 578888
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
+|++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 8875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=354.03 Aligned_cols=193 Identities=28% Similarity=0.440 Sum_probs=168.1
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc------ccc-cceEEEeccCCCCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETF-ARISGYCEQNDIHS 944 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~-~~~~gyv~Q~d~~~ 944 (1445)
..+|++||++|++||+++|||||||||||||++|.|...+ .+|.|.++|.+... ..+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998764 68999999976542 123 45699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000523 945 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1445)
Q Consensus 945 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLD 1023 (1445)
|.+||+||+.+...+.... ...+++.++++++.+||.+..+ .. +..|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999877665432 2245667889999999987665 44 4679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
|||.+||+.++..|++.+++++++ |+|||++|||| ++...+||++.|++|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999865 89999999998 4788999999999753
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=348.99 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=185.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|++-.++ +++++|+|||+.|++||++||+|+|||||||||++|.|... +..|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 467888876653 35689999999999999999999999999999999999765 5689999999764
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000523 926 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994 (1445)
Q Consensus 926 ~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 994 (1445)
.. ..+++.+||++|+..+.+.+||.||++.+..-+.+ -....++.+..+-++++.+|+.+.+-...
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 34678899999999999999999999876422211 11223344555678999999998877764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
..|||||+|||+|||+|+.+|+||+.|||+++|||.++..||+.|+++++ .|.|||++.||.+. ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 46999999999999999999999999999999999999999999999985 59999999999875 678999999998
Q ss_pred cCcEEEEEcCCCC
Q 000523 1074 RGGQEIYVGPLGR 1086 (1445)
Q Consensus 1074 ~gG~~~y~G~~~~ 1086 (1445)
. |+++|.||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 5 89999999854
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=359.66 Aligned_cols=224 Identities=30% Similarity=0.461 Sum_probs=189.3
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCc---cCCCcCc-cceEEEEcCCCCCCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEFVP-QRTAAYISQHDNHIG 239 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~d~~~~ 239 (1445)
...+++|||+.|+.||+++++|||||||||||++|||+..|+ +|+|.+||. |.+.... .|.+|||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 445899999999999999999999999999999999999999 999999999 6666433 488999999999999
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
+|||.+||.|+.+++.. .|+ ..+.+.+++++|+...|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhh-----c
Confidence 99999999999876521 011 1123456788899999987655 6
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
++.+|||||||||++||||+..|++|+||||+++||...+..+.+.|+++.... +.+.+.++|+..|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhcceEEEec
Confidence 677899999999999999999999999999999999999999999999875533 5555568999999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhh
Q 000523 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev 436 (1445)
+|+|...||++++. ..|...-+..|+-++
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~~ 241 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGEV 241 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceecccccc
Confidence 99999999999984 345555555555443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=377.31 Aligned_cols=212 Identities=34% Similarity=0.497 Sum_probs=184.7
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1445)
.+.+|+|||+++++|++++|+||||||||||||+|+|++.|+ +|+|.++|++.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 357999999999999999999999999999999999999998 99999999987652 3357899999999999999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+|||.|.+++.+... .....+++++++.+||++..+ +.+
T Consensus 94 T~~e~l~~~~~l~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~-----~~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSK----------------------------------EEAEERIEELLELFGLEDKAN-----KKV 134 (293)
T ss_pred cHHHHHHHHHHHhCCCh----------------------------------hHHHHHHHHHHHHcCCchhhC-----cch
Confidence 99999999998875321 011235788999999998444 445
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
++||+||||||+||.||+++|++|||||||+|||+.++.++.+.|++++. .++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~-~g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK-EGGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHh-CCCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999876 34456666788899999999999999999
Q ss_pred eEEEecChhHHHHHHHh
Q 000523 402 QIVYQGPRELVLEFFAS 418 (1445)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (1445)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=355.81 Aligned_cols=208 Identities=27% Similarity=0.443 Sum_probs=176.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCC--CCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (1445)
++|+|||+++++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+..+...+..+|||||.. .+-+.+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 3999999999999999999999999999999999999998 999999999887776677999999953 34445799
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+|.+..+..-+. + ..... ..+.+..++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~-g----~~~~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK-G----WFRRL-------------------------NKKDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc-c----ccccc-------------------------cHHHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999998742211 0 01100 111235688999999999999988875
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.+. +.+|++++|+...+.+.||+|+.|++ ++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-HL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-ee
Confidence 9999999999999999999999999999999999999999999998753 56666689999999999999999965 78
Q ss_pred EEecChhHHHH
Q 000523 404 VYQGPRELVLE 414 (1445)
Q Consensus 404 v~~G~~~~~~~ 414 (1445)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999988753
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=412.96 Aligned_cols=258 Identities=27% Similarity=0.365 Sum_probs=209.3
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.|+.+...+|+.++++.++|.=..+. ....+....+++|+|+++.+...
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~~-------------------------- 484 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGPD-------------------------- 484 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCCC--------------------------
Confidence 78999999999999999888211110 12334446789999999998531
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
...+|+|+|++|+|||.++|+|+||||||||+|+|+|+++|+ +|+|.+||+|+++.++ ++.++||+|+
T Consensus 485 ------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 485 ------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred ------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 114999999999999999999999999999999999999999 9999999999887765 5899999997
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+ ++++.||+||+.++. +....+.+.++++....+ -.+..++.++||
T Consensus 556 ~-~Lf~gSI~eNi~l~~----p~~~~e~i~~A~~~ag~~-----------------------------~fI~~lP~gy~t 601 (709)
T COG2274 556 P-FLFSGSIRENIALGN----PEATDEEIIEAAQLAGAH-----------------------------EFIENLPMGYDT 601 (709)
T ss_pred c-hhhcCcHHHHHhcCC----CCCCHHHHHHHHHHhCcH-----------------------------HHHHhccccccc
Confidence 6 556679999999864 222233333333322111 124578999999
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.||+.+. +||||||||++|||||+++|+||+||||||+||+.++..|.+.|++.. .++|+|+.. | +..+.+.||+
T Consensus 602 ~v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~Ia-H-Rl~ti~~adr 676 (709)
T COG2274 602 PVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIA-H-RLSTIRSADR 676 (709)
T ss_pred ccccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEE-c-cchHhhhccE
Confidence 9997665 799999999999999999999999999999999999999999999864 345655544 3 4578899999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+|+.+|+++++++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999986
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=355.28 Aligned_cols=205 Identities=29% Similarity=0.448 Sum_probs=185.2
Q ss_pred ceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCc---cCCc-ccccceEEEeccCCCCCCC
Q 000523 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSPF 946 (1445)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~d~~~~~ 946 (1445)
...+++|||+.|+.||++||+|||||||||||++|||..+ +..|.|.+||. +.++ ....|.+|||+|+-.+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4568999999999999999999999999999999999987 56899999998 5444 3346889999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000523 947 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1445)
Q Consensus 947 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPT 1026 (1445)
+||.+|+.|+..++ ...++..+++.+++++|+.++|+++.+.. +..|||||||||++||||+.+|++|+||||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998877 33455667788899999999999999887 5689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCC
Q 000523 1027 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1027 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~ 1085 (1445)
++||+.-+..+.+.|+++.+. |.|+|++|||+. ++++.+|||++|++ |++.-.||..
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999999865 999999999986 79999999999986 7999889873
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=336.35 Aligned_cols=200 Identities=28% Similarity=0.369 Sum_probs=183.5
Q ss_pred EEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCHH
Q 000523 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTIY 950 (1445)
Q Consensus 873 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv~ 950 (1445)
++++||||+++.||++||+|+|||||||+|++|++... +.+|.|.+||.+... ...++.+|.++.+--++..+|++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 58999999999999999999999999999999999887 568999999998643 45678899999888889999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000523 951 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1445)
Q Consensus 951 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD 1030 (1445)
|||.|.+.+.. ....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 99999988863 4556678889999999999999999975 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1031 ~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
..+...+.+.++++.+.|++||+++|.++ ++.++||++++|++ |++++.|..
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 99999999999999888999999999986 78889999999996 799999986
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=337.34 Aligned_cols=220 Identities=25% Similarity=0.389 Sum_probs=178.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|||+.|+++++||++|||||||||||++|....+. ..+++|+|.++|+++-+. ..|+.+|.|+|.+..|
T Consensus 21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF 100 (253)
T COG1117 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF 100 (253)
T ss_pred hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence 499999999999999999999999999999999988654 457899999999997543 2368999999999999
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcc-ccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVG 317 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg 317 (1445)
| +|++||+.|+.|++|... +.+ +.+++..|+.-+|-+ ..|.+ .
T Consensus 101 p-~SIydNVayG~r~~g~~~--~~l--------------------------------deiVe~sLk~AaLWdEVKDrL-~ 144 (253)
T COG1117 101 P-MSIYDNVAYGLRLHGIKD--KEL--------------------------------DEIVESSLKKAALWDEVKDRL-H 144 (253)
T ss_pred C-chHHHHHHHhHHhhccch--HHH--------------------------------HHHHHHHHHHhHhHHHhHHHh-h
Confidence 9 999999999999887532 111 122333333333322 11211 1
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1445)
+...+|||||+||++|||+|+-+|+||+||||||+|||.++..|.+.+.++. ..-+|+.++|.+.++.+..|+..+
T Consensus 145 -~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRvSD~taF 220 (253)
T COG1117 145 -KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARVSDYTAF 220 (253)
T ss_pred -CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHHhHhhhh
Confidence 2344699999999999999999999999999999999999999999999874 345566689999999999999999
Q ss_pred ecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHH
Q 000523 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1445)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl 433 (1445)
+..|++++.|+.+++ |..|..+...||+
T Consensus 221 f~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 221 FYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 999999999999987 3457766666665
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=340.14 Aligned_cols=215 Identities=26% Similarity=0.383 Sum_probs=179.9
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1445)
.++|+|||+.|++||+++|+|||||||||||++|.|..+|+ +|+|.+||.++..... ++.+||++|+..+.
T Consensus 17 ~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 45999999999999999999999999999999999999998 9999999988765542 46899999999999
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.+||.+|+..+..-.. .... .-.+..+ ++.+..+-+.|+.+|+.+.+.+..+
T Consensus 94 ~r~sv~~NVl~grl~~~--s~~~---------slfglfs---------------k~dk~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 94 PRLSVLENVLLGRLGYT--STWR---------SLFGLFS---------------KEDKAQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred cccHHHHHHHhhhcccc--hHHH---------HHhCCCC---------------HHHHHHHHHHHHHcCcHHHHHHHhc-
Confidence 99999999998753211 0100 1111111 1223455677999999988887665
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
.|||||+|||+|||+|+.+|++++-|||+++||+.++.++++.|++.....+.|+|+ .+|..+-+.++||||+-|
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~-nLH~vdlA~~Y~~Riigl 221 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIV-NLHQVDLAKKYADRIIGL 221 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE-EechHHHHHHHHhhheEe
Confidence 499999999999999999999999999999999999999999999998766556555 556678899999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000523 399 SDGQIVYQGPRELVLE 414 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1445)
++|+|+|.||++++.+
T Consensus 222 ~~G~ivfDg~~~el~~ 237 (258)
T COG3638 222 KAGRIVFDGPASELTD 237 (258)
T ss_pred cCCcEEEeCChhhhhH
Confidence 9999999999988654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=333.00 Aligned_cols=206 Identities=32% Similarity=0.377 Sum_probs=182.9
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1445)
.++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+..+.. .++.+|.++.+-.++..||
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhh
Confidence 34899999999999999999999999999999999999999 999999999875432 3578999997778999999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
++|||.|.+++.+.. ..+.+.+++++.+.|+|.+|.|+.+|+
T Consensus 92 ~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~~---- 133 (245)
T COG4555 92 ARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVGE---- 133 (245)
T ss_pred HHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHhh----
Confidence 999999998775431 122345678899999999999998885
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
+|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++. ..+.+|+..+|.++|+..+||+|++|++|+
T Consensus 134 -~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 134 -FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred -hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 99999999999999999999999999999999999999999999863 346667778999999999999999999999
Q ss_pred EEEecChhHHHH
Q 000523 403 IVYQGPRELVLE 414 (1445)
Q Consensus 403 iv~~G~~~~~~~ 414 (1445)
+++.|+.+.+.+
T Consensus 211 vv~~gs~~~l~~ 222 (245)
T COG4555 211 VVLEGSIEALDA 222 (245)
T ss_pred EEEcCCHHHHHH
Confidence 999999988754
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=326.87 Aligned_cols=213 Identities=25% Similarity=0.326 Sum_probs=183.3
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.|++|+..|. ..+++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 46777765554 23569999999999999999999999999999999999766 56899999999865
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. -++|.+|.|+||..+.+..||+||+.|...... .+..+.+++|.++|+.+||.+..+.+ +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 31 257899999999999999999999999876654 34566778899999999999988876 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHH-hhceEeEEecCcEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~-~fD~v~~l~~gG~~~ 1079 (1445)
|||+|||+||||++.+|++|+.||||.+|||..+..||+++.++.+.|.|||+.||+.. +.+ .-.|++.|.+ |+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~--lv~~~~~rvl~l~~-Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE--LVNRMRHRVLALED-GRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH--HHHhccCcEEEEeC-CEEE
Confidence 99999999999999999999999999999999999999999999989999999999854 444 4467888875 7888
Q ss_pred EEcCC
Q 000523 1080 YVGPL 1084 (1445)
Q Consensus 1080 y~G~~ 1084 (1445)
.....
T Consensus 217 ~d~~~ 221 (223)
T COG2884 217 RDESR 221 (223)
T ss_pred ecccc
Confidence 76543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=372.71 Aligned_cols=229 Identities=24% Similarity=0.362 Sum_probs=193.4
Q ss_pred cCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCC
Q 000523 110 VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189 (1445)
Q Consensus 110 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 189 (1445)
..+..+.-+|+|+||++++.+ +++||+++||+|+.||.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~~---------------------------------k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYGP---------------------------------KRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeCC---------------------------------CCceecceeEEecCCCEEEEECCCCC
Confidence 467778889999999999842 22499999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHH
Q 000523 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266 (1445)
Q Consensus 190 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (1445)
||||+|++|.++++ . +|+|.+||.++++..+ |+.+|||||+ .++++.||.+||.++. +...++.+.++
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd-~~LFndTIl~NI~YGn----~sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQD-SVLFNDTILYNIKYGN----PSASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCc-ccccchhHHHHhhcCC----CCcCHHHHHHH
Confidence 99999999999998 5 9999999999887655 5789999995 5566679999999985 33455666666
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccce
Q 000523 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (1445)
Q Consensus 267 ~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vll 346 (1445)
|++...++ -+..|+++++|.||+++.. |||||||||++||+++.+|+|++
T Consensus 461 ~k~a~~hd-----------------------------~i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAGLHD-----------------------------VISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcCcHH-----------------------------HHHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 66543211 1456889999999998875 99999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHHH
Q 000523 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 347 LDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1445)
+|||||+||+.|+.++++.+.+. ..++|+|+. .|. ..+..-||+|++|++|++.+.|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~I-vH~-l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMI-VHR-LDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEE-Eec-chhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999873 245666654 444 46778899999999999999999999976
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=363.79 Aligned_cols=214 Identities=28% Similarity=0.399 Sum_probs=191.3
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|++..+. ...+|+|||++|+.||.++|+|||||||||||++|||... +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 467777776653 1129999999999999999999999999999999999886 5689999999987
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 926 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
+. ...+|.+++|+|+..++|++||+||+.|+.+++. .++++.+++|+++.+.|+|+++.|.. ++.||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 65 3456889999999999999999999999987764 45677888999999999999999987 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. |.+.++||+.+|+ +|++.-.|.
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998754 899999999974 7999999999998 589999988
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 6
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=366.28 Aligned_cols=214 Identities=27% Similarity=0.408 Sum_probs=186.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|++..+. ++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 578888887763 2469999999999999999999999999999999999876 4689999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 926 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 926 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
.. ...++.+|||+|++.+++.+||+|++.|.+.++. .+..+.+++++++++.++|.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2346789999999999999999999998766542 233444556789999999988887764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||++||+||+++|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999987 68889999999986 79999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 6
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=330.48 Aligned_cols=217 Identities=23% Similarity=0.324 Sum_probs=187.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCC---CCCeEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 922 (1445)
.++++|++..+. .+++|+|||+.|++++++||+|||||||||||++|.+.. ++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 577888887773 467999999999999999999999999999999998843 3446889999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 996 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1445)
.++.. ..+|+.+|.|+|.+.-|| +|++||+.|+.++....+ ++.++.|++.|+...|++ .+|.+..+ .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 87643 357889999999999999 999999999988765433 566788999999999975 44544333 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
.+|||||+|||||||+|+.+|+||+||||||+|||.+...|.+++.++. +.-|||++||.+. ......|+...+.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 5799999999999999999999999999999999999999999999997 4689999999986 47788999999986 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
+++.+|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999997
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=366.97 Aligned_cols=257 Identities=20% Similarity=0.339 Sum_probs=216.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.|..-.-+|+.+++++|++| ++|.....++..++..|+|+||++.+++
T Consensus 502 iQ~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p--------------------------- 549 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYDP--------------------------- 549 (790)
T ss_pred HHHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecCC---------------------------
Confidence 45666678999999999999 8888888888889999999999999853
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~ 234 (1445)
.+++|+||||++.||+.+|++||||+||||++++|.+..+.+ +|.|++||+|++... .++.||.||||
T Consensus 550 ------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 550 ------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred ------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 245999999999999999999999999999999999999988 999999999986543 46789999996
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
..+| +.|+..|+.|+. ++...+.+.++++... ---++++++++++|
T Consensus 621 tvLF-NdTI~yNIryak----~~AsneevyaAAkAA~-----------------------------IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 621 TVLF-NDTILYNIRYAK----PSASNEEVYAAAKAAQ-----------------------------IHDRILQFPEGYNT 666 (790)
T ss_pred ceee-cceeeeheeecC----CCCChHHHHHHHHHhh-----------------------------HHHHHhcCchhhhh
Confidence 5554 569999999864 3333333333322211 11247899999999
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.||+++.+ |||||||||+|||++++.|.+++|||.||+||..++++|..+|.+++. ++|+|+.. |+.++.-.+|.
T Consensus 667 ~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ 741 (790)
T KOG0056|consen 667 RVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADL 741 (790)
T ss_pred hhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccE
Confidence 99999997 999999999999999999999999999999999999999999999874 34544433 45667778999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|+++++|+|++.|.++|++.
T Consensus 742 ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999875
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=367.78 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=177.4
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1445)
.++|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+ ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 45999999999999999999999999999999999999998 9999999999876532 45799999999999
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.+||+||+.|+.+..+... .+...++.++++.+||.+..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998765432110 011234677899999988777554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+.|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.+.. +.+|+.++|+...+.+.||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986533 455566888999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=341.70 Aligned_cols=196 Identities=30% Similarity=0.450 Sum_probs=166.4
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1445)
.++|++||++|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.++..+.. ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999998876543 3579999999999
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
+|++||+||+.+...+.+.... .....++.+++.+||.+..+.
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~--- 137 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLK--- 137 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhcc---
Confidence 9999999999988766543211 112346778899999866551
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1445)
..+..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++.+.. +++|+.++|+ +++...|||++.
T Consensus 138 -~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd-~~lA~~~dr~i~ 214 (226)
T COG1136 138 -KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHD-PELAKYADRVIE 214 (226)
T ss_pred -CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCC-HHHHHhCCEEEE
Confidence 3345699999999999999999999999999999999999999999999987644 4444546665 577889999999
Q ss_pred ecCCeE
Q 000523 398 LSDGQI 403 (1445)
Q Consensus 398 L~~G~i 403 (1445)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=404.90 Aligned_cols=258 Identities=24% Similarity=0.401 Sum_probs=212.3
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCC--cceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1445)
...++....++++++|..+. +... +..+...| +.+|+|+||++.|+
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~-----i~~~-~~~~~~~~~~~G~I~~~~V~F~YP-------------------------- 998 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPT-----IDPD-STSGGKLPNVKGDIEFRNVSFAYP-------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCC-----CCCC-CCCCCccccceeEEEEeeeEeeCC--------------------------
Confidence 45677888889998888764 2211 13443333 46799999999983
Q ss_pred hhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEc
Q 000523 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1445)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~ 232 (1445)
+ ++..+||+|+|+++++|+.+||||||||||||...+|-+.++|+ +|.|.+||+++++++. |+++|.|+
T Consensus 999 ----s-RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVs 1070 (1228)
T KOG0055|consen 999 ----T-RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVS 1070 (1228)
T ss_pred ----C-CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceec
Confidence 2 24567999999999999999999999999999999999999999 9999999999998876 58899999
Q ss_pred CCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccc
Q 000523 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1445)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1445)
|+|.+|. .|+||||.||.. ....+.+.++++...++++ +.+|++++
T Consensus 1071 QEP~LF~-~TIrENI~YG~~----~vs~~eIi~Aak~ANaH~F-----------------------------I~sLP~Gy 1116 (1228)
T KOG0055|consen 1071 QEPVLFN-GTIRENIAYGSE----EVSEEEIIEAAKLANAHNF-----------------------------ISSLPQGY 1116 (1228)
T ss_pred cCchhhc-ccHHHHHhccCC----CCCHHHHHHHHHHhhhHHH-----------------------------HhcCcCcc
Confidence 9987665 599999999821 1234445555544433222 56899999
Q ss_pred cccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000523 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1445)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~ 392 (1445)
||.||+++. +||||||||++||||+++||+||||||.||+||+++++-+.+.|.+.. .++|+|+.. |+..+.+.+
T Consensus 1117 DT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIA--HRLSTIqna 1191 (1228)
T KOG0055|consen 1117 DTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIA--HRLSTIQNA 1191 (1228)
T ss_pred cCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEe--cchhhhhcC
Confidence 999999887 599999999999999999999999999999999999999999999864 345555543 567899999
Q ss_pred CeEEEecCCeEEEecChhHHHH
Q 000523 393 DDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~~ 414 (1445)
|.|+|+++|+|+++|+|+++++
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999976
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=368.86 Aligned_cols=206 Identities=28% Similarity=0.406 Sum_probs=178.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|++||+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 4899999999999999999999999999999999999998 9999999998876544 47899999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+.+.++.. ..+....++++++.+||++..|.. ++.|
T Consensus 95 eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~L~~~~~~~-----~~~L 135 (353)
T TIGR03265 95 DNIAYGLKNRGMG----------------------------------RAEVAERVAELLDLVGLPGSERKY-----PGQL 135 (353)
T ss_pred HHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhCC-----hhhC
Confidence 9999986543211 011223567889999998877754 4569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+. .+++++.++|+..++..++|+|++|++|+++
T Consensus 136 SgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987653 3455666888999999999999999999999
Q ss_pred EecChhHHHH
Q 000523 405 YQGPRELVLE 414 (1445)
Q Consensus 405 ~~G~~~~~~~ 414 (1445)
+.|+++++.+
T Consensus 215 ~~g~~~~~~~ 224 (353)
T TIGR03265 215 QVGTPQEIYR 224 (353)
T ss_pred EEcCHHHHHh
Confidence 9999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=369.10 Aligned_cols=205 Identities=25% Similarity=0.368 Sum_probs=177.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|++.+++++||+
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 4999999999999999999999999999999999999998 9999999999876544 37899999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+.+..+.. ..+...+++++++.+||++..+..+ +.|
T Consensus 95 eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 135 (356)
T PRK11650 95 ENMAYGLKIRGMP----------------------------------KAEIEERVAEAARILELEPLLDRKP-----REL 135 (356)
T ss_pred HHHHhHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 9999986543210 0011234678899999987776544 569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ ..+++++.++|+..++..++|+|++|++|+++
T Consensus 136 SgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR-RLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998765 33456666888999999999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
..|+++++.
T Consensus 215 ~~g~~~~~~ 223 (356)
T PRK11650 215 QIGTPVEVY 223 (356)
T ss_pred EECCHHHHH
Confidence 999999874
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=367.43 Aligned_cols=205 Identities=24% Similarity=0.386 Sum_probs=178.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++++||+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999999876555 37899999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+.+.++... .+...+++++++.+||.+..|.. ++.|
T Consensus 97 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~L 137 (351)
T PRK11432 97 ENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQI 137 (351)
T ss_pred HHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 99999875432110 11223567889999998766544 4569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+|||||+.+|++|+|||||++||+.++.++.+.|+++.+ ..+++++.++|+..++.+++|+|++|++|+++
T Consensus 138 SgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 138 SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ-QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765 33455666889999999999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
..|+++++.
T Consensus 217 ~~g~~~~~~ 225 (351)
T PRK11432 217 QIGSPQELY 225 (351)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=363.23 Aligned_cols=215 Identities=27% Similarity=0.383 Sum_probs=191.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|++-.+. ...+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 577888776653 4679999999999999999999999999999999999887 5689999999987
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 926 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
... ..+|.+|+|+|+-.+||++||+||+.|+.+++. ...+++.+++|+++++.++|.+..+.. +..||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 653 457889999999999999999999999977442 344566788999999999999998887 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+|||||+.+|++|+||||.|.||..-+..+..-++++.+ .|.|.|++|||.. +.+.+.||+.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 999999999999999999999999999999999999999875 4999999999986 78899999999985 89988887
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
+
T Consensus 221 P 221 (352)
T COG3842 221 P 221 (352)
T ss_pred H
Confidence 6
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=367.64 Aligned_cols=207 Identities=23% Similarity=0.349 Sum_probs=179.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCce--eEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS--GTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ + |+|.++|+++....+ ++.++||+|+..+++++|
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 4899999999999999999999999999999999999998 8 999999998866544 467999999999999999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.|+.+..+... .+...+++++++.+||++..|..+ +
T Consensus 96 v~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~-----~ 136 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP-----A 136 (362)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----h
Confidence 9999999865432110 011234678899999988777554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999987653225566668899999999999999999999
Q ss_pred EEEecChhHHHH
Q 000523 403 IVYQGPRELVLE 414 (1445)
Q Consensus 403 iv~~G~~~~~~~ 414 (1445)
++..|+++++.+
T Consensus 217 i~~~g~~~~~~~ 228 (362)
T TIGR03258 217 LAAHGEPQALYD 228 (362)
T ss_pred EEEEcCHHHHHh
Confidence 999999998843
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=363.79 Aligned_cols=217 Identities=23% Similarity=0.297 Sum_probs=186.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+... .....+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5678888776421 012469999999999999999999999999999999999876 46899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. ..++.+||++|+..+++..||+||+.+...... .+.++.++++.++++.+||.+..+.. ++.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 235679999999999999999999998765432 34455566789999999999887766 45799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999865 899999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000523 1080 YVGPL 1084 (1445)
Q Consensus 1080 y~G~~ 1084 (1445)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=360.56 Aligned_cols=205 Identities=27% Similarity=0.407 Sum_probs=177.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1445)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+||
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 24679999999999999999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.|.++..+... .+...+++++++.+||.+..++.++ +
T Consensus 98 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 138 (306)
T PRK13537 98 RENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG-----E 138 (306)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----h
Confidence 999998665443110 0112245678899999988887665 5
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|...++.++||+|++|++|++
T Consensus 139 LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~i 216 (306)
T PRK13537 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGRK 216 (306)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 55666688999999999999999999999
Q ss_pred EEecChhHHHH
Q 000523 404 VYQGPRELVLE 414 (1445)
Q Consensus 404 v~~G~~~~~~~ 414 (1445)
++.|+.+++.+
T Consensus 217 ~~~g~~~~l~~ 227 (306)
T PRK13537 217 IAEGAPHALIE 227 (306)
T ss_pred EEECCHHHHHh
Confidence 99999998864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=348.66 Aligned_cols=213 Identities=24% Similarity=0.352 Sum_probs=180.2
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4677776653 2469999999999999999999999999999999999876 458999999987543
Q ss_pred ------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 928 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 928 ------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
..+++.++|++|++.+++.+||.|++.+...... ....++.++.++++++.++|.+..+.. +..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 2345679999999999999999999988643321 123344456688899999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 57788999999985 79999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 9875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=332.05 Aligned_cols=205 Identities=27% Similarity=0.334 Sum_probs=177.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCC--CCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHD--NHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 239 (1445)
++|+|||+++.+||+.+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 5999999999999999999999999999999999999999 999999998765542 357789999987 5789
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
..||++.|.-+.+..+.+ +...++.++|+.+||+... -++
T Consensus 98 ~~tv~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~----l~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSF----LDR 137 (252)
T ss_pred chhHHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHH----Hhc
Confidence 999999997665443221 1112356789999998543 346
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
.+..|||||||||+|||||..+|++|++|||||+||++.+.+|++.|.++.+ ..+.+++.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheeeee
Confidence 6778999999999999999999999999999999999999999999998765 567778889999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000523 400 DGQIVYQGPRELVLE 414 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1445)
+|++++.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998865
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=366.36 Aligned_cols=205 Identities=27% Similarity=0.374 Sum_probs=177.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.++|++||+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999999876544 46799999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+.+..+... .+....++++++.+||++..|..+ ..|
T Consensus 105 eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~L 145 (375)
T PRK09452 105 ENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQL 145 (375)
T ss_pred HHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 99999865332110 011234677899999987777544 569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+|||||+.+|++|+||||+++||..++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999886533 455666889999999999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
..|+++++.
T Consensus 225 ~~g~~~~i~ 233 (375)
T PRK09452 225 QDGTPREIY 233 (375)
T ss_pred EEcCHHHHH
Confidence 999998874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=363.95 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=187.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 377888887763 2468999999999999999999999999999999999876 5689999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 926 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..+..+.++.++++++.++|.++.+.. +..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 224577999999999999999999999986543 234455667899999999999988876 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 68899999999986 79999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 6
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=364.36 Aligned_cols=214 Identities=24% Similarity=0.356 Sum_probs=186.3
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|++..++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67788877662 12469999999999999999999999999999999999876 46899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 927 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 927 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+..+.++.++++++.++|.+..+.. +..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHH
Confidence 32 23478999999999999999999999986543 234455567789999999999888876 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 899999999986 68899999999985 899999986
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=395.82 Aligned_cols=255 Identities=27% Similarity=0.427 Sum_probs=203.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.+......||+.+++++.++ +++..+. .+.+..+++|+|+++.++.
T Consensus 295 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~~--------------------------- 340 (567)
T COG1132 295 LQRASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYPG--------------------------- 340 (567)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcCC---------------------------
Confidence 56788888999999988655 3332222 3445677999999999842
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
++++|+|+|++++|||.+||+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 341 ------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 341 ------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred ------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 234999999999999999999999999999999999999998 9999999999887765 5789999997
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.+|. .||+|||.++.. ....+.+.++++... ..+. +..|+++.||
T Consensus 412 ~~LF~-~TI~~NI~~g~~----~at~eei~~a~k~a~---------------------------~~d~--I~~lp~g~dt 457 (567)
T COG1132 412 PLLFS-GTIRENIALGRP----DATDEEIEEALKLAN---------------------------AHEF--IANLPDGYDT 457 (567)
T ss_pred ceeec-ccHHHHHhcCCC----CCCHHHHHHHHHHhC---------------------------hHHH--HHhCcccccc
Confidence 65555 899999999742 122233444333321 1112 2345888999
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.||+++. .||||||||++||||++++|++|+||||||+||+.++..|.+.++++. +++|+++ +.|.. .+...+|+
T Consensus 458 ~vge~G~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRl-sti~~aD~ 532 (567)
T COG1132 458 IVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRL-STIKNADR 532 (567)
T ss_pred eecCCCc-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccH-hHHHhCCE
Confidence 9997655 599999999999999999999999999999999999999999998764 3456666 56655 44555999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|++++.|+++++++
T Consensus 533 IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 533 IIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999999976
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=346.47 Aligned_cols=206 Identities=30% Similarity=0.395 Sum_probs=172.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4999999999999999999999999999999999999998 999999999876532 2457999999998899
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.++.+... +.. ..+....++++++.+||++..++.+
T Consensus 91 ~~tv~~~l~~~~~~~~-~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (235)
T cd03261 91 SLTVFENVAFPLREHT-RLS--------------------------------EEEIREIVLEKLEAVGLRGAEDLYP--- 134 (235)
T ss_pred CCcHHHHHHHHHhhcc-CCC--------------------------------HHHHHHHHHHHHHHcCCchhhcCCh---
Confidence 9999999988643210 000 0011224567789999987666554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|+
T Consensus 135 --~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l~ 211 (235)
T cd03261 135 --AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVLY 211 (235)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEEE
Confidence 469999999999999999999999999999999999999999999987642 24556667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (235)
T cd03261 212 DGKIVAEGTPEELR 225 (235)
T ss_pred CCeEEEecCHHHHc
Confidence 99999999987753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=342.02 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=180.6
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCC----CcCccceEEEEcCCC-CCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFVPQRTAAYISQHD-NHIG 239 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1445)
..+|+|+|+.+++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 45999999999999999999999999999999999999998 999999999865 223468899999996 4677
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.-||.|.++|+.+..+... ++...+++.+++.+||.+.++.
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r----- 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDR----- 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccC-----
Confidence 8899999999987765421 1234568889999999988764
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
.+..|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++++.. .++.++|.++|+...+..++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 4556999999999999999999999999999999999999999999999865 445566668999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000523 400 DGQIVYQGPRELVLE 414 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1445)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=361.66 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=188.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|++..+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478888887763 2468999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 926 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
... ..+|.+|||+|+..++|++||+||+.|+...+. .+..+.+++++++++.++|.++.+.. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 532 235789999999999999999999999875442 34456667899999999999888766 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68899999999986 79999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 6
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=395.07 Aligned_cols=255 Identities=23% Similarity=0.340 Sum_probs=194.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC-CcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL-PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1445)
.++.+...+|+.++++.+++. ........+. ...+|+|+||++.+..
T Consensus 314 ~~~~~~~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~i~~~~vsf~~~~-------------------------- 361 (588)
T PRK11174 314 KAQAVGAAESLVTFLETPLAH------PQQGEKELASNDPVTIEAEDLEILSPD-------------------------- 361 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcc------cCCCccccCCCCCceEEEEeeEEeccC--------------------------
Confidence 467778888988888765431 0000111111 1347999999986521
Q ss_pred hcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 000523 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1445)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 233 (1445)
+.++|+|+|++++||+.++|+||||||||||+++|+|.+ |+ +|+|.+||+++++... ++.++||+|
T Consensus 362 -------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 430 (588)
T PRK11174 362 -------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQ 430 (588)
T ss_pred -------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecC
Confidence 124899999999999999999999999999999999999 87 9999999999887754 478999999
Q ss_pred CCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
++.+| +.||+|||.++.. ....+.+.++++... .++. +-.|+++.|
T Consensus 431 ~~~LF-~~TI~eNI~~g~~----~~~~eei~~al~~a~---------------------------l~~~--i~~lp~G~d 476 (588)
T PRK11174 431 NPQLP-HGTLRDNVLLGNP----DASDEQLQQALENAW---------------------------VSEF--LPLLPQGLD 476 (588)
T ss_pred CCcCC-CcCHHHHhhcCCC----CCCHHHHHHHHHHhC---------------------------HHHH--HHhcccccc
Confidence 77555 5699999998631 112222222222111 1111 234778889
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
|.||+++. .||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++. .++|+|+. +|.. ++.+.||
T Consensus 477 T~vge~G~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiI-tHrl-~~i~~aD 551 (588)
T PRK11174 477 TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMV-THQL-EDLAQWD 551 (588)
T ss_pred cccccCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEE-ecCh-HHHHhCC
Confidence 99998765 599999999999999999999999999999999999999999998863 34565554 4443 5677899
Q ss_pred eEEEecCCeEEEecChhHHHH
Q 000523 394 DIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1445)
+|++|++|+++++|+++++.+
T Consensus 552 ~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 552 QIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=359.98 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=186.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|++..+. ++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 588899987763 3469999999999999999999999999999999999876 4589999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 926 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 926 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
.. ...++.+||++|+..+++.+||.|++.+.+.++. .+..+.++.++++++.++|.+..++.+ +.|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2345679999999999999999999987665442 223334456788999999998877764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||++||++|+++|++|+|||||+|||+.++..+++.|+++.+.|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999877999999999986 68889999999986 79999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 6
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=362.19 Aligned_cols=208 Identities=21% Similarity=0.310 Sum_probs=179.3
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1445)
.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 345999999999999999999999999999999999999998 9999999999876544 468999999999
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1445)
+++++||+||+.|+.+..+... .+...++.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999999865543210 011234677899999987766554
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
+ .|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+ ..+.+|+.++|+..++..++|+|+
T Consensus 128 ~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~-~~~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 D-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA-TLQKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 6999999999999999999999999999999999999999999998754 334556668899999999999999
Q ss_pred EecCCeEEEecChhHHHH
Q 000523 397 LLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1445)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=361.57 Aligned_cols=209 Identities=28% Similarity=0.407 Sum_probs=177.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|+++|+++....+ ++.++||+|++.+++++||+
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998865444 36799999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+.+..+.... + ...+...+++++++.+||++..|.. +..|
T Consensus 93 eni~~~~~~~~~~~~-----------------~-------------~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~L 137 (353)
T PRK10851 93 DNIAFGLTVLPRRER-----------------P-------------NAAAIKAKVTQLLEMVQLAHLADRY-----PAQL 137 (353)
T ss_pred HHHHhhhhhcccccC-----------------C-------------CHHHHHHHHHHHHHHcCCchhhhCC-----hhhC
Confidence 999997643210000 0 0011223567889999998776654 4569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+.+++.++|+..++..++|+|++|++|+++
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765 33555666889999999999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
+.|+++++.
T Consensus 217 ~~g~~~~i~ 225 (353)
T PRK10851 217 QAGTPDQVW 225 (353)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=361.64 Aligned_cols=214 Identities=24% Similarity=0.334 Sum_probs=187.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEE--EEEEEcCc
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 923 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~ 923 (1445)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 477888887763 2469999999999999999999999999999999999876 457 99999998
Q ss_pred cCCc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 924 PKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 924 ~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
+... ...++.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++. ++.||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHH
Confidence 7643 223567999999999999999999999986543 234455566789999999999988876 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999875 799999999986 68899999999985 79999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9986
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=315.50 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=175.5
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1445)
..+|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++..... +|++|+|+|+.-++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 34999999999999999999999999999999999999999 9999999999865532 58999999999999
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+..||.||++|+.+..|... .+.+.++.++|+..||.+.++..
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~l--- 134 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARAL--- 134 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcC---
Confidence 99999999999987765321 23345678899999999888744
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+..|||||||||+||||++.+|++|+-||||-.||+.++..|++.+.++-. .+|+|+..+|+..-+..+-.+++.|
T Consensus 135 --P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 135 --PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred --ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 456999999999999999999999999999999999999999999998743 4666666788988888899999999
Q ss_pred cCCeEEEecC
Q 000523 399 SDGQIVYQGP 408 (1445)
Q Consensus 399 ~~G~iv~~G~ 408 (1445)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=338.98 Aligned_cols=210 Identities=28% Similarity=0.394 Sum_probs=176.3
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4567776653 2469999999999999999999999999999999999875 458999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000523 928 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006 (1445)
Q Consensus 928 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1445)
. ..++.++|++|++.+++.+|++|++.+...... ......++.++++++.+++.+..+.. +..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHH
Confidence 2 234579999999988889999999988654321 22334455678999999998777665 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1007 l~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
++||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999986 57788999999986 7887655
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=313.02 Aligned_cols=201 Identities=24% Similarity=0.382 Sum_probs=172.8
Q ss_pred cceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000523 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1445)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1445)
..++.|++||++||+||||||||||||+|+|+..|. +|+|.+||.+.....| +|-++.++|+..+|.++||++|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 477899999999999999999999999999999998 9999999999887766 478999999999999999999999
Q ss_pred HhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhh
Q 000523 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1445)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1445)
++.. ++-+.. .+....++.++...||..+.+.+. ..|||||
T Consensus 94 LGl~---P~LkL~-------------------------------a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKLN-------------------------------AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQ 134 (231)
T ss_pred ccCC---cccccC-------------------------------HHHHHHHHHHHHHhChhhHhhhCc-----cccCchH
Confidence 8752 211100 011235677889999998877554 4699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecC
Q 000523 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1445)
Q Consensus 329 rqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1445)
||||++||+|+++-+||+||||+|+||+.-+.+....+.+++...+.| ++.++|+.+++...+|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~T-llmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMT-LLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCE-EEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999988755445 4556677789999999999999999999999
Q ss_pred hhHHH
Q 000523 409 RELVL 413 (1445)
Q Consensus 409 ~~~~~ 413 (1445)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=361.58 Aligned_cols=205 Identities=25% Similarity=0.340 Sum_probs=177.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|++.+++++||.
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998866544 47899999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+.+.++... .+...+++++++.+||.+..+.. +.+|
T Consensus 110 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~-----~~~L 150 (377)
T PRK11607 110 QNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRK-----PHQL 150 (377)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 99999865432110 01223467889999998766644 4569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+|||||+.+|++|+||||+++||..++.++.+.|+++.+.. +.+++.++|+..++..++|+|++|++|+++
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999998876543 455666889999999999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
..|+++++.
T Consensus 230 ~~g~~~~~~ 238 (377)
T PRK11607 230 QIGEPEEIY 238 (377)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=324.44 Aligned_cols=206 Identities=24% Similarity=0.411 Sum_probs=171.7
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1445)
.++|++||+++++||+++|+||||+||||||++|+|..++. +|+|.++|+|++...+. +-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 56999999999999999999999999999999999999987 99999999999887663 568999999999999
Q ss_pred CCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcC-Cccccccccccc
Q 000523 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDE 319 (1445)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1445)
|||+|||..++..... .. . ...+ .|.+.+.+- |.+..+..-|
T Consensus 93 LTVeENL~~g~~~~~~-~~----------~------~~~~------------------~e~v~~lFP~Lker~~~~aG-- 135 (237)
T COG0410 93 LTVEENLLLGAYARRD-KE----------A------QERD------------------LEEVYELFPRLKERRNQRAG-- 135 (237)
T ss_pred CcHHHHHhhhhhcccc-cc----------c------cccc------------------HHHHHHHChhHHHHhcCccc--
Confidence 9999999987643210 00 0 0000 122222222 3333344433
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
.|||||||-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+ .++.+|+.+.|+...+.+.+|+.++|.
T Consensus 136 ---~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~-~~g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 136 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK-EGGMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred ---CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHH-cCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence 5999999999999999999999999999999999999999999999865 445677889999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000523 400 DGQIVYQGPRELVLE 414 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1445)
+|+|++.|+.+++.+
T Consensus 212 ~Griv~~G~~~eL~~ 226 (237)
T COG0410 212 NGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999998864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=339.47 Aligned_cols=214 Identities=23% Similarity=0.330 Sum_probs=187.7
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.+++++|.+.. +..+|+|+|+.|++||.++|+|+||||||||+++|+|... +.+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 567888888742 2479999999999999999999999999999999999876 45799999998855
Q ss_pred ----cccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 927 ----QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 927 ----~~~~~~~~gyv~Q~d~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
...+++.+|||+|++.. +..-||.|.+.|+..-. ..+.++.+++++++++.+++.+.++.. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 34578889999999765 45679999999986432 345566888999999999999998876 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++..+ |.|||++|||.. .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999876 689999999986 58888999999986 79999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=356.52 Aligned_cols=201 Identities=27% Similarity=0.380 Sum_probs=176.7
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCH
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
+.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 569999999999999999999999999999999999876 458999999987643 2345679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgL 1029 (1445)
+|++.+.+.++. ......++.++++++.++|.+..+..+ +.|||||||||+||+||+.+|++|+|||||+||
T Consensus 84 ~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999998765542 223344556889999999988777764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|+.++..+++.|+++.++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999877999999999986 68889999999985 799999985
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=311.45 Aligned_cols=196 Identities=25% Similarity=0.344 Sum_probs=172.3
Q ss_pred cceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc-cccceEEEeccCCCCCCCCCHHHHHHH
Q 000523 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLF 955 (1445)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f 955 (1445)
..+..|.+||++||+||||||||||||.|+|... +.+|+|.|||.+.... ...|-++.++|+..+|.++||++|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678899999999999999999999999999887 4589999999886542 356778999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000523 956 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1445)
Q Consensus 956 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~ 1035 (1445)
+..-.+ ... .+.+++++.++..+||.++.+.+. ..|||||||||++||+|+++-+|++||||+|.|||.-+.
T Consensus 95 Gl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 642111 122 344567899999999999998884 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1036 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1036 ~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
++..++.++++ ++.|++++||+|+ |+....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999986 5899999999997 79999999999986 899999986
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=361.97 Aligned_cols=205 Identities=26% Similarity=0.387 Sum_probs=175.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998865443 46799999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+.+..+... .+...+++++++.+||++..+..+ ..|
T Consensus 94 eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~L 134 (369)
T PRK11000 94 ENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KAL 134 (369)
T ss_pred HHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hhC
Confidence 99999765332100 011234677899999987766554 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++
T Consensus 135 SgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 455666788889999999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
..|+++++.
T Consensus 214 ~~g~~~~i~ 222 (369)
T PRK11000 214 QVGKPLELY 222 (369)
T ss_pred EEcCHHHHH
Confidence 999998874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=359.15 Aligned_cols=216 Identities=25% Similarity=0.382 Sum_probs=185.6
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. .+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56778877653 2469999999999999999999999999999999999876 45899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 927 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 927 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
.. ..++.+|||+|+..++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 32 2346799999999999999999999997654211 1234455566789999999998887776 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68899999999985 79999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 6
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=372.08 Aligned_cols=217 Identities=29% Similarity=0.437 Sum_probs=180.6
Q ss_pred ccCCCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEE
Q 000523 840 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 919 (1445)
Q Consensus 840 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~ 919 (1445)
.|.-+..++++|++|.+... ...+|+|+|++|+|||.+||+|+||||||||+|+|+|..+ +..|+|.
T Consensus 465 ~~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 34445689999999998632 2369999999999999999999999999999999999877 5689999
Q ss_pred EcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccc
Q 000523 920 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQS 989 (1445)
Q Consensus 920 i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~ 989 (1445)
+||+++++ ..+|+.+|||+|++.++. -|++||+.++. ++.+.++ +.++++..|..+ -.++
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhccccccc
Confidence 99998754 567899999999988765 69999998752 3333332 334444444332 3456
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceE
Q 000523 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1069 (1445)
Q Consensus 990 ~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v 1069 (1445)
.+|.. ..+||||||||++|||+|+++|+||+||||||+||+.+.+.|++.|.++. .|+|+|+++|+++ ....+|++
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 66654 46899999999999999999999999999999999999999999999985 4799999999986 57889999
Q ss_pred eEEecCcEEEEEcCC
Q 000523 1070 FLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1070 ~~l~~gG~~~y~G~~ 1084 (1445)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99985 899999996
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=335.71 Aligned_cols=209 Identities=24% Similarity=0.417 Sum_probs=176.9
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4667776652 2469999999999999999999999999999999999865 458999999987643
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000523 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1007 (1445)
Q Consensus 928 ~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1007 (1445)
..++.++|++|++.+++.+|++|++.+....+. ......++.++++++.+++.+..+.. +..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHH
Confidence 345679999999988889999999988655432 22333445678999999998776665 357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1008 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1008 ~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
+||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998877899999999986 57788999999986 7887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=357.66 Aligned_cols=206 Identities=27% Similarity=0.375 Sum_probs=175.6
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1445)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 45999999999999999999999999999999999999998 9999999998865432 35799999999899
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.+||+||+.++.+..+... .+....++++++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998764432100 011224567889999987766554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999987653 3455666888889999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=337.76 Aligned_cols=208 Identities=23% Similarity=0.318 Sum_probs=174.9
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 467788777631 12369999999999999999999999999999999999875 45899999998753
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. .+++.++|++|++.+++.+||.|++.+....+. ......++.++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999988999999999988754432 223344556889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+.+.+|++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999777899999999986 57778999999986 44
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=337.01 Aligned_cols=200 Identities=26% Similarity=0.397 Sum_probs=172.6
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHH
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 951 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 951 (1445)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999865 458999999987642 3567999999998888899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000523 952 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031 (1445)
Q Consensus 952 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~ 1031 (1445)
++.+....+. ......++.++++++.++|.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988754432 22334455688999999998776665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEec-CcEEEEEcCC
Q 000523 1032 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1084 (1445)
Q Consensus 1032 ~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~-gG~~~y~G~~ 1084 (1445)
.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ .|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 57788999999985 4899888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=353.05 Aligned_cols=214 Identities=27% Similarity=0.373 Sum_probs=182.8
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.+. ++.+|+|||++|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887763 2469999999999999999999999999999999999875 4589999999875
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 926 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 926 ~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
.. ...++.+||++|++.+++.+||+|++.+.+..+. .+....++.++++++.++|.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2245679999999999999999999987554331 233334456788999999988777764 5799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 57788999999985 79999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=336.90 Aligned_cols=212 Identities=29% Similarity=0.377 Sum_probs=179.6
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
.++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 4677776653 2469999999999999999999999999999999999865 458999999976532
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 928 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 928 --~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
...++.++|++|++.+++.+||+|++.+....+. ...++.++.++++++.++|.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 2334679999999989999999999988754432 223334556889999999987777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999986 57788999999985 799988874
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=356.44 Aligned_cols=205 Identities=27% Similarity=0.392 Sum_probs=176.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1445)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|++.+++.+||
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 24679999999989999999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.+.....+... .+....++++++.+||++..++.++ +
T Consensus 132 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~-----~ 172 (340)
T PRK13536 132 RENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS-----D 172 (340)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----h
Confidence 999997654432100 0011235667889999988877665 5
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++.. . +++|+.++|+..++.++||+|++|++|++
T Consensus 173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~i 250 (340)
T PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGRK 250 (340)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999854 3 45566688999999999999999999999
Q ss_pred EEecChhHHHH
Q 000523 404 VYQGPRELVLE 414 (1445)
Q Consensus 404 v~~G~~~~~~~ 414 (1445)
+++|+.+++.+
T Consensus 251 ~~~g~~~~l~~ 261 (340)
T PRK13536 251 IAEGRPHALID 261 (340)
T ss_pred EEEcCHHHHHh
Confidence 99999998865
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=358.80 Aligned_cols=214 Identities=22% Similarity=0.323 Sum_probs=187.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478889887763 2469999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 926 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
.. ...+|.+||++|+..++|.+||.||+.|+...+. .+..+.++.++++++.++|.+..+.. +..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 43 2235779999999999999999999999865432 33445566789999999999888876 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999764 899999999986 68899999999985 89999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 6
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=335.25 Aligned_cols=210 Identities=26% Similarity=0.389 Sum_probs=177.0
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 4677776653 2369999999999999999999999999999999999865 458999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000523 928 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006 (1445)
Q Consensus 928 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1445)
. ..++.++|++|++.+++..|++|++.+....+. ...++.++.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 2 224579999999988889999999988654331 223344556788999999987777653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1007 l~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
++||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++++|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999764 899999999986 57788999999985 7888776
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=318.03 Aligned_cols=205 Identities=26% Similarity=0.365 Sum_probs=182.2
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCccc----ccceEEEeccCCCCCC
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 945 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~d~~~~ 945 (1445)
++++++++||+.|++||++||+|||||||||.+.++.|... +.+|.|.+||.++.... -+.-+||.||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 45689999999999999999999999999999999999876 45899999999876532 2335899999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000523 946 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1445)
Q Consensus 946 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEP 1025 (1445)
.+||+||++.....+.. +....+++++++++++.+++.++++... ..||||||+|+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999877666542 2233466677899999999999999873 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1026 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
++|+||-+-..|.++++.+.+.|..|++|-|+-. +....+||.+++.+ |+++..|.+
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 9999999999999999999999999999999987 78999999999986 799999986
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=329.21 Aligned_cols=221 Identities=29% Similarity=0.421 Sum_probs=189.0
Q ss_pred ccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCC
Q 000523 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (1445)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1445)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4567999999999999999999999999999999999999999 99999999999888764 4578899999999
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
++|||.||+..++..+.. ... . .. .|. ...+..+...++.++|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~---~------l~-~~~---------~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSG---L------LG-RPR---------ARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhh---h------hc-ccc---------chhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999998654321 000 0 00 000 0011223455678899999999999988875
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ .++.+|+.|.|++.-+..+||||+||
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999865 45677888999999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000523 399 SDGQIVYQGPRELVLE 414 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1445)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=340.42 Aligned_cols=215 Identities=26% Similarity=0.354 Sum_probs=179.1
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4567766652 2469999999999999999999999999999999999875 458999999987643
Q ss_pred c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000523 928 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996 (1445)
Q Consensus 928 ~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1445)
. . .++.++|++|++.+++.+||+|++.+....+.... ......++.++++++.+++.+..+.. +
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----A 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----h
Confidence 2 1 23458999999999999999999988754332110 11233445688999999998776665 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999877899999999987 57788999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 99998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=325.50 Aligned_cols=217 Identities=26% Similarity=0.337 Sum_probs=179.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++.+|++..+.... ....+|+|||++|.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 367788877664321 11259999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCc
Q 000523 926 KQE----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSG 998 (1445)
Q Consensus 926 ~~~----~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 998 (1445)
... .+.+.+.+|+||+. +.|..||++.|.=.... ...++.+ +++.++++.+||.+- .+.. +..
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chh
Confidence 543 36788999999975 67899999988655433 1222222 238999999999753 3333 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
||||||||++|||||+.+|++|+||||||.||+..+++|++.|.++.++ +.|.|+++||.+. +..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999764 7899999999874 8889999999996 79
Q ss_pred EEEEcCCC
Q 000523 1078 EIYVGPLG 1085 (1445)
Q Consensus 1078 ~~y~G~~~ 1085 (1445)
++..+|.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999974
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=348.27 Aligned_cols=218 Identities=27% Similarity=0.402 Sum_probs=177.1
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCC-CC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDN-HI 238 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1445)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999886532 2467999999863 44
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc--ccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMV 316 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1445)
+.+||+||+.|+....+.. .++....++++++.+||+ +..|+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~-- 140 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDK-- 140 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccC--
Confidence 5689999999865432210 011223467789999996 44454
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
.++.||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ ..+++|+.++|+..++.++||+|+
T Consensus 141 ---~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 ---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK-EYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ---CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 4457999999999999999999999999999999999999999999998865 335566668888899999999999
Q ss_pred EecCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000523 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~lG~~cp~ 425 (1445)
+|++|+++++|+.+++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23344555443
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=335.62 Aligned_cols=199 Identities=29% Similarity=0.448 Sum_probs=166.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998764332 35799999998888899999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.++....+.. . .+....++++++.+||++..++.+ ..|
T Consensus 91 ~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03259 91 ENIAFGLKLRGVP-K---------------------------------AEIRARVRELLELVGLEGLLNRYP-----HEL 131 (213)
T ss_pred HHHHhHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 9998864322100 0 001123566788999987666554 459
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.++||+|++|++|+++
T Consensus 132 SgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 132 SGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987643 3455666888888999999999999999998
Q ss_pred Eec
Q 000523 405 YQG 407 (1445)
Q Consensus 405 ~~G 407 (1445)
+.|
T Consensus 211 ~~g 213 (213)
T cd03259 211 QVG 213 (213)
T ss_pred ecC
Confidence 765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=356.04 Aligned_cols=217 Identities=22% Similarity=0.294 Sum_probs=183.9
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|++++++.. ..++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678888776411 013569999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. ..++.+||++|++.+++.+||+||+.+....+. .+..+.++.++++++.++|.+..+.. ++.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRY-----PAQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 235679999999999999999999998755432 23344456788999999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57788999999985 8999
Q ss_pred EEcCC
Q 000523 1080 YVGPL 1084 (1445)
Q Consensus 1080 y~G~~ 1084 (1445)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=315.54 Aligned_cols=207 Identities=30% Similarity=0.456 Sum_probs=175.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc---ceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 242 (1445)
.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|+|.+||.+++++.+. +.-+..+|+..+-+..|
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 4999999999999999999999999999999999999999 99999999999888764 56789999988888889
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+|-+.+++.-.+.+.. | .+...+++.+|...++.+.+. +..+
T Consensus 92 v~eVV~mGr~p~~~g~~-----------------~---------------~e~~~i~~~ala~~d~~~la~-----R~y~ 134 (259)
T COG4559 92 VQEVVQMGRIPHRSGRE-----------------P---------------EEDERIAAQALAATDLSGLAG-----RDYR 134 (259)
T ss_pred HHHHHHhcccccccCCC-----------------c---------------hhhHHHHHHHHHHcChhhhhc-----cchh
Confidence 99999998743322111 0 012234666777777776554 3456
Q ss_pred cCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 323 GISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~------~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
.|||||||||.+||.|+. ++++||||||||+||...+..+++..|++++. + ..|+.+.|+..-+..+||+|+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhheee
Confidence 799999999999999985 45689999999999999999999999999873 3 556668899999999999999
Q ss_pred EecCCeEEEecChhHHHH
Q 000523 397 LLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1445)
+|++||++..|++++++.
T Consensus 213 ll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 213 LLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeCCeEeecCCHHHhcC
Confidence 999999999999998763
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=338.54 Aligned_cols=212 Identities=26% Similarity=0.361 Sum_probs=179.0
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
.++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4667776653 2469999999999999999999999999999999999876 458999999987542
Q ss_pred c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 928 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 928 ~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
. . .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.+++.+..+.. +..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 1 1 23468999999999999999999987643322 22333445678899999998776665 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999999877899999999986 58889999999985 79999887
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=338.81 Aligned_cols=216 Identities=27% Similarity=0.393 Sum_probs=180.4
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67788887763 2469999999999999999999999999999999999875 45899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 927 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 927 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
.. ..++.++|++|++.+++.+||+|++.+....+... .......++.++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHH
Confidence 32 22456999999998888999999998865432110 012233345678899999998776665 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999765 899999999986 57788999999985 78999987
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 5
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=335.80 Aligned_cols=215 Identities=27% Similarity=0.409 Sum_probs=179.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+... .....+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 4567777766311 011269999999999999999999999999999999999875 45899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 927 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 927 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
. ..+++.++|++|++.+++.+||+|++.+....+. ....+..+.++++++.+++.+..+.. +..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHH
Confidence 3 2345679999999988899999999987654432 23344456788999999998777765 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999986 7877654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=356.01 Aligned_cols=214 Identities=24% Similarity=0.358 Sum_probs=186.7
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|++..+. +..+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488888887663 2469999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 926 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
.. ...+|.+||++|+..++|++||.||+.|+...+. .+..+.+++++++++.++|.+..+.. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 2346789999999999999999999999765432 33455566789999999999887776 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 68899999999985 79999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 6
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=358.16 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=184.6
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887763 2469999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 926 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
... ..++.+||++|+..+++.+||+||+.|....+. .+..+.++.++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 431 234679999999999999999999998765432 23344556789999999998877766 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 68889999999985 89999998
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 6
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=346.74 Aligned_cols=204 Identities=20% Similarity=0.218 Sum_probs=152.2
Q ss_pred CceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCc
Q 000523 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 923 (1445)
Q Consensus 844 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1445)
|..+.+.+|.+.++.. .-+++.+++..++.-...+++|+||+||||++|++.|..+ +..|-+.+++
T Consensus 360 ~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 3457777777665421 1268899999999999999999999999999999998655 3466665544
Q ss_pred cCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 924 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 924 ~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
++.++|-.|..+-+-.+.|.+- .+-...+. .... +.+++-+..+||..-.- ...+.+|||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~p--G~~~----ee~r~hl~~~Gl~g~la----~~si~~LSGGQ 487 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSFP--GKTE----EEIRRHLGSFGLSGELA----LQSIASLSGGQ 487 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHH-HHHHHhCC--CCCH----HHHHHHHHhcCCCchhh----hccccccCCcc
Confidence 4568999998665544454432 23223331 2222 22556778888865321 11257899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
|-||++|.....+|.+|+|||||+.||..+-..+-++|++. +..||+++|+-+. +-..|+++.+.++|.-.-+.|.
T Consensus 488 KsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 488 KSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred hhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeecc
Confidence 99999999999999999999999999999999999999876 4689999999764 7788999999997655555554
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=335.18 Aligned_cols=204 Identities=29% Similarity=0.384 Sum_probs=171.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1445)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 4999999999999999999999999999999999999998 999999998764321 23579999999888999999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.+..+..+... .+....++++++.+||++..++.++ .
T Consensus 91 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 131 (220)
T cd03265 91 WENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK-----T 131 (220)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----h
Confidence 999998654322100 0112245678999999876666554 5
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+..++.+.+|++++|++|++
T Consensus 132 LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE-EFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999998765 3245566688888999999999999999999
Q ss_pred EEecChhHH
Q 000523 404 VYQGPRELV 412 (1445)
Q Consensus 404 v~~G~~~~~ 412 (1445)
++.|+.+++
T Consensus 211 ~~~~~~~~~ 219 (220)
T cd03265 211 IAEGTPEEL 219 (220)
T ss_pred EEeCChHHc
Confidence 999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=352.68 Aligned_cols=206 Identities=28% Similarity=0.395 Sum_probs=176.6
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1445)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 45999999999999999999999999999999999999998 999999998875421 2357999999999999999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.+.++..+... .+....++++++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998765433110 0012245778999999887776654
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998754 3 4556668889999999999999999999
Q ss_pred EEEecChhHHHH
Q 000523 403 IVYQGPRELVLE 414 (1445)
Q Consensus 403 iv~~G~~~~~~~ 414 (1445)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=359.23 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=184.5
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. ++.+|+|+|+.|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~ 68 (402)
T PRK09536 4 IDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVE 68 (402)
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcC
Confidence 67788887763 3579999999999999999999999999999999999876 45899999998764
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 927 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
. ..+++.+||++|+..+++.+||+|++.++...... ........++.++++++.+++.+..++. ++.||||
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHH
Confidence 3 34567899999999998999999999886432110 0111233456689999999999888776 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||||+.|||+|+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G 221 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999999999999999999999999999999877899999999987 57889999999985 7999999
Q ss_pred CCC
Q 000523 1083 PLG 1085 (1445)
Q Consensus 1083 ~~~ 1085 (1445)
+..
T Consensus 222 ~~~ 224 (402)
T PRK09536 222 PPA 224 (402)
T ss_pred CHH
Confidence 863
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=354.60 Aligned_cols=202 Identities=25% Similarity=0.304 Sum_probs=177.9
Q ss_pred ceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc---cc----cceEEEeccCCCC
Q 000523 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDIH 943 (1445)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~d~~ 943 (1445)
.+.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4569999999999999999999999999999999999876 4689999999886532 22 5689999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000523 944 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1445)
Q Consensus 944 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLD 1023 (1445)
+|.+||+||+.|...+. ..+.+++++++.++++.++|.+..+.. +..|||||||||+|||||+.+|+||+||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999976543 234555667789999999998877776 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|||++||+.++..+++.++++.++ |+|||++||++. ++...+|++++|++ |+++..|+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999998754 899999999986 57889999999985 799999985
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=359.24 Aligned_cols=255 Identities=27% Similarity=0.398 Sum_probs=194.4
Q ss_pred HhhHHHHHHhhhccccchHHHHHHHHHHHhh-cCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDR-VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
+...+..|++....+.+++. .+.-.+ .-...|.++++.+||++.++.
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~-----~~~~~~~~~~~~~~~ei~~~~l~~~y~~--------------------------- 332 (559)
T COG4988 285 AAGEAAADKLFTLLESPVAT-----PGSGEKAEVANEPPIEISLENLSFRYPD--------------------------- 332 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCC-----CCCccccccccCCCceeeecceEEecCC---------------------------
Confidence 34456666666666665541 111111 112346789999999999753
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
.+++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+.++..+ +++++||+|+
T Consensus 333 ------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 333 ------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred ------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCC
Confidence 114899999999999999999999999999999999999998 9999999999887764 5899999998
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.++ ..|+|||+.++.. ....+.+.++.++. .+.+.+.-+++.||
T Consensus 404 p~lf-~gTireNi~l~~~----~~s~e~i~~al~~a------------------------------~l~~~v~~p~GLdt 448 (559)
T COG4988 404 PYLF-AGTIRENILLARP----DASDEEIIAALDQA------------------------------GLLEFVPKPDGLDT 448 (559)
T ss_pred Cccc-cccHHHHhhccCC----cCCHHHHHHHHHHh------------------------------cHHHhhcCCCcccc
Confidence 7554 5699999998742 11112222211111 11222233667899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+ ++|||||+|||++||||+.+++++++||||++||.+|+..|.+.|.++++ ++|+++ ++| +.+...-+|+
T Consensus 449 ~ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itH-rl~~~~~~D~ 523 (559)
T COG4988 449 VIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITH-RLEDAADADR 523 (559)
T ss_pred hhccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEc-ChHHHhcCCE
Confidence 999765 57999999999999999999999999999999999999999999998764 355555 444 3566777999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+++++|.++++.+
T Consensus 524 I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 524 IVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEEecCCceeccCCHHHHhh
Confidence 99999999999999999854
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=355.43 Aligned_cols=257 Identities=22% Similarity=0.322 Sum_probs=197.1
Q ss_pred ChHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhh
Q 000523 77 GLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1445)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1445)
..++...+..|+-++.++++|. + .+.-..+.+...++++||+++++.
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~-----~--~~~~~~~~~~~~l~~~~vsF~y~~-------------------------- 348 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEV-----T--FPDEQTATTGQALELRNVSFTYPG-------------------------- 348 (573)
T ss_pred HhhHHHHHHHHHhhhccCCccc-----C--CCccccCCccceeeeccceeecCC--------------------------
Confidence 3566778888888888888772 1 111112222226999999999864
Q ss_pred hcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 000523 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1445)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 233 (1445)
++.++|+|+|+++++||.+||+|+||||||||+++|+|-++|+ +|+|+.||.++.+... ++.+++++|
T Consensus 349 ------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q 419 (573)
T COG4987 349 ------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ 419 (573)
T ss_pred ------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc
Confidence 1234999999999999999999999999999999999999999 9999999999877765 468999999
Q ss_pred CCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
. .|++..|+|+||.++.. ....+.+.++.++ .+ .++. ..+.+++.|
T Consensus 420 r-~hlF~~Tlr~NL~lA~~----~AsDEel~~aL~q---------------------vg------L~~l--~~~~p~gl~ 465 (573)
T COG4987 420 R-VHLFSGTLRDNLRLANP----DASDEELWAALQQ---------------------VG------LEKL--LESAPDGLN 465 (573)
T ss_pred c-hHHHHHHHHHHHhhcCC----CCCHHHHHHHHHH---------------------cC------HHHH--HHhChhhhh
Confidence 4 67778899999987641 1121211111110 00 0111 123456788
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
|.+|+.+. +||||||||++|||+|++++++++|||||.|||+.|+.++++.|.+-+ .++|+++ ++|+... .+.||
T Consensus 466 t~lge~G~-~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~-vTHrL~~-le~~d 540 (573)
T COG4987 466 TWLGEGGR-RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLM-VTHRLRG-LERMD 540 (573)
T ss_pred chhccCCC-cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEE-Eeccccc-HhhcC
Confidence 99997654 699999999999999999999999999999999999999999998643 4555555 5666554 45689
Q ss_pred eEEEecCCeEEEecChhHHHH
Q 000523 394 DIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1445)
+|++|++|+++++|++.++++
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999875
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=337.96 Aligned_cols=209 Identities=30% Similarity=0.421 Sum_probs=171.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 4999999999999999999999999999999999999998 9999999988754432 35799999998888899999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.++....+...+ + + ..+....++.+++.+||++..++.+ ..|
T Consensus 93 e~l~~~~~~~~~~~~-----------------~--~-----------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 137 (239)
T cd03296 93 DNVAFGLRVKPRSER-----------------P--P-----------EAEIRAKVHELLKLVQLDWLADRYP-----AQL 137 (239)
T ss_pred HHHhhhhhhcccccc-----------------C--C-----------HHHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 999986533211000 0 0 0001123567788999976666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.... +.+|+.++|+..++.+.+|++++|++|+++
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-HVTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999999999999876532 445555778888899999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
+.|+.+++.
T Consensus 217 ~~~~~~~~~ 225 (239)
T cd03296 217 QVGTPDEVY 225 (239)
T ss_pred EecCHHHHh
Confidence 999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=349.17 Aligned_cols=212 Identities=23% Similarity=0.364 Sum_probs=183.5
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|++.++. ++.+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56778877663 2469999999999999999999999999999999999876 46899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 927 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 927 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
. ...++.+||++|++.+++.+||.|++.+.+.++. ...++..+.++++++.++|.+..+..+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998776542 223444556889999999998887764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
||++||+||+++|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999986 68889999999985 899999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=332.45 Aligned_cols=206 Identities=30% Similarity=0.397 Sum_probs=174.5
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 4667766652 2469999999999999999999999999999999999875 458999999987543
Q ss_pred -ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000523 928 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006 (1445)
Q Consensus 928 -~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1445)
...++.++|++|++.+++..||+|++.+....+. . .++.++++++.+++.+..+.. +..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHH
Confidence 2335679999999988889999999988654321 1 134478899999998877665 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1007 l~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998877899999999986 47778999999985 7888765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=336.75 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=176.5
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCC-----CCCeEEEEEEEcC
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITISG 922 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~-----~~~~~~G~i~i~g 922 (1445)
+++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4667766652 236999999999999999999999999999999999986 4 4689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.+... ..+++.++|++|++.++ .+||+||+.+....+.. ......++.++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87542 23456799999998877 79999999886544321 1122234567889999999876655421 25
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|+++ .+.+.+|++++|++ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 79999999999999999999999999999999999999999999999876 99999999986 57788999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 218 i~~~g~~ 224 (227)
T cd03260 218 LVEFGPT 224 (227)
T ss_pred EEEecCc
Confidence 9999875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=334.48 Aligned_cols=221 Identities=35% Similarity=0.603 Sum_probs=180.5
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC-CCeEEEEEEEcCccC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPK 925 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~~~ 925 (1445)
+.|+|+++.+... +..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4577777776321 013579999999999999999999999999999999999764 123589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
.....++.++|++|++.+++.+||+||+.+................+.+++ .++.+++.+..+.. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544556789999999999999999999998765433222122222334555 88889988776654 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985468899999999986 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=349.05 Aligned_cols=205 Identities=28% Similarity=0.405 Sum_probs=173.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 4999999999999999999999999999999999999998 999999998874322 24679999999888899999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.+..+..+... .+....++.+++.+||++..++.++ .
T Consensus 95 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~-----~ 135 (303)
T TIGR01288 95 RENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA-----L 135 (303)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----h
Confidence 999987543322100 0011234567889999887776654 5
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.++||+|++|++|++
T Consensus 136 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 45566688889999999999999999999
Q ss_pred EEecChhHHHH
Q 000523 404 VYQGPRELVLE 414 (1445)
Q Consensus 404 v~~G~~~~~~~ 414 (1445)
++.|+.+++.+
T Consensus 214 ~~~g~~~~~~~ 224 (303)
T TIGR01288 214 IAEGRPHALID 224 (303)
T ss_pred EEEcCHHHHHh
Confidence 99999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=392.20 Aligned_cols=253 Identities=24% Similarity=0.330 Sum_probs=195.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.+..++|+.++++.++|. .. +....+....+++|+||++.++.
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~-----~~--~~~~~~~~~~~I~~~nvsf~Y~~--------------------------- 463 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEV-----DE--AKTDPGKLSGAIEVDRVTFRYRP--------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHHhcCCccc-----cc--CcCCCCCCCceEEEEEEEEEcCC---------------------------
Confidence 567788888888887765541 00 00001112347999999999842
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
...++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++..+ ++.++||+|+
T Consensus 464 -----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 464 -----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred -----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 1134899999999999999999999999999999999999998 9999999999987765 4789999997
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.+| +.|++|||.++.. ...+.+.++++. .++ ++. .-.++++.||
T Consensus 536 ~~lf-~gTI~eNi~~~~~-----~~~e~i~~al~~---a~l------------------------~~~--i~~lp~G~dt 580 (686)
T TIGR03797 536 GRLM-SGSIFENIAGGAP-----LTLDEAWEAARM---AGL------------------------AED--IRAMPMGMHT 580 (686)
T ss_pred CccC-cccHHHHHhcCCC-----CCHHHHHHHHHH---cCc------------------------HHH--HHhccccccc
Confidence 7655 5699999998632 111222222211 110 111 2246778899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+ .+||||||||++|||||+++|++|+||||||+||+.++.++.+.|++. ++|+|+ ++|.. ++.+.+|+
T Consensus 581 ~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~ 653 (686)
T TIGR03797 581 VISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADR 653 (686)
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCE
Confidence 999876 469999999999999999999999999999999999999999999873 345555 55543 66678999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+++++|+++++++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=346.93 Aligned_cols=218 Identities=24% Similarity=0.356 Sum_probs=175.3
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCC-
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDN- 236 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~- 236 (1445)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 34999999999999999999999999999999999999998 99999999987531 11357999999852
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-cccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1445)
.+...||+||+.|+.+..+... .+....++++++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 4446799999998754322100 01123467789999996 445544
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|+.++|+..++.+.||+|
T Consensus 143 -----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~-~~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 -----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-EKGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEE
Confidence 456999999999999999999999999999999999999999999998765 33456666888999999999999
Q ss_pred EEecCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000523 396 ILLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~---~f~~lG~~cp~ 425 (1445)
++|++|+++++|+.+++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999888742 23344444443
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=336.77 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=180.8
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.++.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4567777765310 011369999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. ..++.++|++|++.+++.+|+.|++.+....+. .......+.++++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 235679999999999999999999988654332 23334455688999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999985 7999
Q ss_pred EEcCC
Q 000523 1080 YVGPL 1084 (1445)
Q Consensus 1080 y~G~~ 1084 (1445)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 98874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=337.36 Aligned_cols=214 Identities=27% Similarity=0.394 Sum_probs=173.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 24599999999999999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.++....+.. . ..+. . ... ...+....++++++.+||++..++.+
T Consensus 91 tv~~~l~~~~~~~~~~-~------~~~~---~---~~~-----------~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 91 TVLENVMVAAQARTGS-G------LLLA---R---ARR-----------EEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CHHHHHHHHHhhcccc-c------cccc---c---ccc-----------cHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 9999999875432100 0 0000 0 000 00111234677889999987666544
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.. . +.+|+.++|+..++.+.+|++++|++|
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999998764 3 445666788888999999999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
++++.|+++++.
T Consensus 220 ~i~~~~~~~~~~ 231 (236)
T cd03219 220 RVIAEGTPDEVR 231 (236)
T ss_pred EEEeecCHHHhc
Confidence 999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=336.27 Aligned_cols=205 Identities=30% Similarity=0.412 Sum_probs=172.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 5999999999999999999999999999999999999998 9999999998765321 357999999998888
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+|++||+.+.....+.. . .+....++++++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVP-K---------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 999999998865332110 0 001123567889999987666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+..++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR-ELGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 334556667788888899999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=333.69 Aligned_cols=207 Identities=29% Similarity=0.407 Sum_probs=171.6
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.+... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 467777665310 011469999999999999999999999999999999999875 458999999987543
Q ss_pred cc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 928 ET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 928 ~~-------~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.++|.+..+.. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcC
Confidence 11 24579999999999999999999998765432 22333445688999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++. + +.+|++++|++|
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G 216 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDG 216 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCC
Confidence 9999999999999999999999999999999999999999999976 58999999999863 5 489999999863
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=339.09 Aligned_cols=204 Identities=28% Similarity=0.329 Sum_probs=170.7
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc------ccccceEEEeccCCCCCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETFARISGYCEQNDIHSP 945 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~~ 945 (1445)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 469999999999999999999999999999999999875 458999999987542 124567999999998889
Q ss_pred CCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEE
Q 000523 946 FVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1020 (1445)
Q Consensus 946 ~lTv~E~l~f~~~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~il 1020 (1445)
.+||+|++.+...... .........++.++++++.+++.+..+.. +..||||||||++||++|+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 00111123345678899999998766654 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1021 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1021 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999999764 899999999987 57779999999985 799999875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=345.00 Aligned_cols=223 Identities=27% Similarity=0.375 Sum_probs=179.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCC-CC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-NH 237 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (1445)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 4999999999999999999999999999999999999998 99999999987521 1245799999985 24
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-ccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1445)
+...||.||+.|+.+..+... .+...++.++++.+||. ...+.
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccC--
Confidence 445799999998764332100 01122456778889995 34443
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.++||+|+
T Consensus 141 ---~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 ---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 4557999999999999999999999999999999999999999999998753 3 4556668888899999999999
Q ss_pred EecCCeEEEecChhHHHH---HHHhcCCCCCCCCChhHH
Q 000523 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPKRKGVADF 432 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~lG~~cp~~~~~adf 432 (1445)
+|++|+++++|+++++.+ .++..|+.+|.....++.
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 254 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQ 254 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHH
Confidence 999999999999998743 345667776654444433
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=336.39 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=180.3
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 45677776653 2469999999999999999999999999999999999865 46899999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 927 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 927 ~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
. ...++.++|++|++..++.+||.|++.+...... .....+.++.+.++++.+++.+..+.. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2335679999999988889999999987642111 123334455688999999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 799999
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 885
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=331.30 Aligned_cols=199 Identities=31% Similarity=0.434 Sum_probs=167.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998754432 35799999998888899999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.++.+..+... .+....++++++.+||++..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99988654321100 011124567788999987766555 459
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.... +.+|+.++|+..++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 445556778888999999999999999999
Q ss_pred Eec
Q 000523 405 YQG 407 (1445)
Q Consensus 405 ~~G 407 (1445)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=331.53 Aligned_cols=192 Identities=28% Similarity=0.380 Sum_probs=163.3
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCC-CCCCCCHH
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-HSPFVTIY 950 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~-~~~~lTv~ 950 (1445)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.+||++|++. .+...|+.
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 359999999999999999999999999999999999876 468999999987644344567999999974 34467999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000523 951 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1445)
Q Consensus 951 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD 1030 (1445)
||+.+...... . ..+.++++++.++|.+..+.. +..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD----A---GNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC----c---cHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543221 1 123578899999998877765 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1031 ~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999986 47778999999986 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=333.39 Aligned_cols=217 Identities=24% Similarity=0.327 Sum_probs=179.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-+.++|+++.+... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 37788888876411 011469999999999999999999999999999999999875 4689999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000523 926 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 998 (1445)
Q Consensus 926 ~~~~------~-~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1445)
.... . ++.++|++|++.+++.+|++||+.+....+ ....++.++.++++++.++|.+..+.. +..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4311 2 256999999998889999999998865432 122334456688999999998776665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++. + +.+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 58999999999863 4 44689999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9999886
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.94 Aligned_cols=214 Identities=26% Similarity=0.359 Sum_probs=180.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67788877763 2369999999999999999999999999999999999875 45899999998753
Q ss_pred c-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000523 927 Q-----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 995 (1445)
Q Consensus 927 ~-----------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1445)
. ...++.++|++|++.+++..|+.|++.+...... ....+..++.++++++.++|.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235679999999988889999999987543211 122334455688899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 996 ~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 4579999999999999999999999999999999999999999999999877999999999986 57788999999985
Q ss_pred cEEEEEcCC
Q 000523 1076 GQEIYVGPL 1084 (1445)
Q Consensus 1076 G~~~y~G~~ 1084 (1445)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 799999875
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=333.43 Aligned_cols=194 Identities=25% Similarity=0.384 Sum_probs=163.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 4999999999999999999999999999999999999998 999999999875432 2357999999988899
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.++.+..+... .+....++++++.+||++..+..+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 136 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP--- 136 (216)
T ss_pred cccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999998754322100 001224567889999987666554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..++.++||++++|+
T Consensus 137 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 137 --MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998753 3 4556668888889999999999999
Q ss_pred CCeE
Q 000523 400 DGQI 403 (1445)
Q Consensus 400 ~G~i 403 (1445)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.46 Aligned_cols=213 Identities=24% Similarity=0.387 Sum_probs=178.5
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
.++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 46677766531 11469999999999999999999999999999999999875 458999999987643
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 928 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 928 --~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
..+++.++|++|++.+++..|++||+.+....+. .......+.++++++.++|.+..++. +..|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHH
Confidence 2345679999999988889999999988654432 22333445678999999998776665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999875 599999999986 47778999999985 789988875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=331.29 Aligned_cols=206 Identities=25% Similarity=0.341 Sum_probs=173.3
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 45677777652 12369999999999999999999999999999999999865 45899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. .+++.++|++|++.+++.+|+.|++.+....+. ......++.++++++.+++.+..+.. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAF-----PEQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 245679999999988889999999988754331 22333455688999999998766655 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577789999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=334.77 Aligned_cols=204 Identities=22% Similarity=0.383 Sum_probs=171.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 4999999999999999999999999999999999999998 9999999998754332 24699999999899999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.+.....+.. . .+....++++++.+||++..++.+
T Consensus 91 tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 131 (232)
T cd03218 91 TVEENILAVLEIRGLS-K---------------------------------KEREEKLEELLEEFHITHLRKSKA----- 131 (232)
T ss_pred cHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 9999998764322110 0 001124567888999987666544
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+++|++++|++|
T Consensus 132 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 132 SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 3 455666788888999999999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
++++.|+.+++.
T Consensus 210 ~i~~~~~~~~~~ 221 (232)
T cd03218 210 KVLAEGTPEEIA 221 (232)
T ss_pred eEEEEeCHHHhh
Confidence 999999987753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=343.89 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=180.3
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67788887764210 011369999999999999999999999999999999999876 45899999998864
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCc
Q 000523 927 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSG 998 (1445)
Q Consensus 927 ~-----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 998 (1445)
. ...++.+||++|++. .+...||+|++.|..... ..+.++..+.++++++.+||. +..+.. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134568999999863 334579999999865432 234455566789999999996 555554 467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 57788999999986 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999985
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=331.47 Aligned_cols=200 Identities=30% Similarity=0.404 Sum_probs=167.9
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 35999999999999999999999999999999999999998 9999999988753 246799999998888889999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.++....+... .+....++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99988654322100 001123567888999987666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec--CCe
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~--~G~ 402 (1445)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|+..++.+.+|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET-GKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999875433 4455667888888999999999999 799
Q ss_pred EEEecCh
Q 000523 403 IVYQGPR 409 (1445)
Q Consensus 403 iv~~G~~ 409 (1445)
+++.++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9998865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=345.26 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=175.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 23679999999999999999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.|.++..+... ++....++++++.+||++..|+.++ .
T Consensus 93 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 133 (301)
T TIGR03522 93 REYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG-----Q 133 (301)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----h
Confidence 999998765433110 0112245678999999988776654 5
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
|||||||||+||+||+++|++|+|||||+|||+.++.++.+.|+++. .+ ++|+.++|...++.++||+|++|++|++
T Consensus 134 LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999873 34 5666688899999999999999999999
Q ss_pred EEecChhHHHH
Q 000523 404 VYQGPRELVLE 414 (1445)
Q Consensus 404 v~~G~~~~~~~ 414 (1445)
++.|+.+++..
T Consensus 211 ~~~g~~~~~~~ 221 (301)
T TIGR03522 211 VADKKLDELSA 221 (301)
T ss_pred EEeCCHHHHHH
Confidence 99999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=336.11 Aligned_cols=213 Identities=27% Similarity=0.374 Sum_probs=178.6
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
.++|+++.+.. .+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 45677766531 1359999999999999999999999999999999999875 458999999987542
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCHH
Q 000523 928 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 928 ---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgG 1002 (1445)
...++.++|++|++.+++.+||+||+.+...++. .+.+..++.++++++.+++.+ ..+.. ++.||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 2345678999999999999999999988654431 233344556889999999985 55554 4679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 899999999986 57788999999985 789998
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=388.06 Aligned_cols=258 Identities=25% Similarity=0.395 Sum_probs=197.7
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.+..++|+.++++.++|. .........+....+++|+||++.++.
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~-----~~~~~~~~~~~~~~~I~~~~vsf~Y~~--------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVER-----PEGTRFLHRPRLQGEIEFRNVSFAYPG--------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CCCCCCCCCCCccceEEEEEEEEEeCC---------------------------
Confidence 678888999999888876541 000000011112347999999999842
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
...++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 476 -----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 476 -----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred -----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 1124899999999999999999999999999999999999998 9999999999887654 5789999997
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.+| +.|++|||.++.. ....+.+.++++.. + .++. +-.|++..||
T Consensus 548 ~~lf-~~TI~eNi~~~~~----~~~~~~i~~a~~~~---~------------------------l~~~--i~~lp~gl~T 593 (694)
T TIGR03375 548 PRLF-YGTLRDNIALGAP----YADDEEILRAAELA---G------------------------VTEF--VRRHPDGLDM 593 (694)
T ss_pred hhhh-hhhHHHHHhCCCC----CCCHHHHHHHHHHc---C------------------------hHHH--HHhCcccccc
Confidence 7555 5699999987531 11112222221110 0 1111 2247788899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+. .||||||||++||||++++|++++||||||+||+.++..|.+.|++.. .++|+|+ ++|.. ++.+.||+
T Consensus 594 ~i~e~G~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~ii-ItHrl-~~~~~~D~ 668 (694)
T TIGR03375 594 QIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVL-VTHRT-SLLDLVDR 668 (694)
T ss_pred eecCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EecCH-HHHHhCCE
Confidence 9998764 699999999999999999999999999999999999999999998864 3455555 44443 56788999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+++++|+++++++
T Consensus 669 iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.18 Aligned_cols=194 Identities=26% Similarity=0.376 Sum_probs=166.5
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc------cccceEEEeccCCCCCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------TFARISGYCEQNDIHSP 945 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d~~~~ 945 (1445)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 369999999999999999999999999999999999865 4589999999875421 24567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000523 946 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1445)
Q Consensus 946 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEP 1025 (1445)
.+|+.||+.+....+. ...+..++.++++++.+++.+..+.. +..||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988754432 23334455678999999998776665 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 1026 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
|+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|++++|++ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999998777999999999986 46778999999986 44
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=332.55 Aligned_cols=199 Identities=29% Similarity=0.434 Sum_probs=168.1
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc---c-ccceEEEeccCCCCCCCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T-FARISGYCEQNDIHSPFV 947 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~l 947 (1445)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 369999999999999999999999999999999999876 4589999999875431 1 245699999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000523 948 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1026 (1445)
Q Consensus 948 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPT 1026 (1445)
|++||+.+...... ....++.+.++++.+ ++.+..+.. +..||||||||++|||+|+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988654321 122334466778877 466555554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1027 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1027 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
+|||+.++..+++.|+++++.|+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 999999999999999999877899999999986 57788999999985 799998875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=340.78 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=169.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1445)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 4899999999999999999999999999999999999998 9999999998865332 35799999986 367788
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.|+.+..+... .+....++++++.+||++..+..+
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP----- 138 (279)
T ss_pred cHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 99999998754322100 011234577899999987666544
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++ ..+|+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tilivtH~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999886533 45555567777777 579999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (279)
T PRK13650 217 QVESTSTPRELF 228 (279)
T ss_pred EEEEECCHHHHH
Confidence 999999998765
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=316.56 Aligned_cols=213 Identities=26% Similarity=0.392 Sum_probs=177.5
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|++..| ++.++|++||+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 5667776555 34689999999999999999999999999999999999876 34899999999876
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCH
Q 000523 927 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 927 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ..++-++||||....||.+||+|||..++..+.. ++..+..++++.+.+ .|.+.++...| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 3456699999999999999999999988765432 111122256777766 35556666543 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
||||.++|||||+++|++|+|||||.||-|.-..+|.++|+++.++ |.||+++-++.. ...+..||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 779999988876 47789999999985 89999
Q ss_pred EcCCC
Q 000523 1081 VGPLG 1085 (1445)
Q Consensus 1081 ~G~~~ 1085 (1445)
.|+..
T Consensus 218 ~G~~~ 222 (237)
T COG0410 218 SGTAA 222 (237)
T ss_pred ecCHH
Confidence 99963
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=313.11 Aligned_cols=211 Identities=22% Similarity=0.370 Sum_probs=180.9
Q ss_pred cccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCC
Q 000523 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNH 237 (1445)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~ 237 (1445)
.+++++++|||+.+++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.+++.+... .-+||+||++..
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchH
Confidence 34567999999999999999999999999999999999999999 99999999999887653 358999999999
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
|-.+||+|||.-..+.+.... ...+.+.+.+.+|+.+.|.+++|..-.
T Consensus 91 Fr~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr~~~a~ 138 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLRDSKAY 138 (243)
T ss_pred hhcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHhcCccc
Confidence 999999999987654332100 001123356789999999999886533
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1445)
.||||||+|+-|||||+.+|+.++||||++|+||-+..+|.+.++.+.. .+.-|+.+-|.-.|+...|||.++
T Consensus 139 -----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYI 211 (243)
T COG1137 139 -----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYI 211 (243)
T ss_pred -----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEE
Confidence 5999999999999999999999999999999999999999999998764 344455577888999999999999
Q ss_pred ecCCeEEEecChhHHHH
Q 000523 398 LSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1445)
+++|++..+|+++++.+
T Consensus 212 i~~G~vla~G~p~ei~~ 228 (243)
T COG1137 212 ISDGKVLAEGSPEEIVN 228 (243)
T ss_pred EecCeEEecCCHHHHhc
Confidence 99999999999998864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=339.93 Aligned_cols=202 Identities=25% Similarity=0.307 Sum_probs=172.9
Q ss_pred ceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc---c----ccceEEEeccCCCC
Q 000523 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDIH 943 (1445)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~d~~ 943 (1445)
.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 4579999999999999999999999999999999999876 4589999999875421 1 13569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000523 944 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1023 (1445)
Q Consensus 944 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLD 1023 (1445)
++.+||+|++.+...... ......++.++++++.++|.+..+..+ ..||||||||++||++|+.+|+||+||
T Consensus 114 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 989999999988654321 223344456889999999988777764 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1024 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999998754 899999999986 57788999999985 799998875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=338.50 Aligned_cols=215 Identities=19% Similarity=0.290 Sum_probs=181.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-+.++|+++.+. ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478889987763 2469999999999999999999999999999999999875 4589999999875
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000523 926 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 999 (1445)
Q Consensus 926 ~~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1445)
... ..++.++|++|+..+++.+||.||+.+...... ..+....++.+.++++.+++.+..+.. +..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 421 134569999999988899999999987643221 122333445678899999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 1000 SgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999985 799
Q ss_pred EEEcCC
Q 000523 1079 IYVGPL 1084 (1445)
Q Consensus 1079 ~y~G~~ 1084 (1445)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 999885
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=338.00 Aligned_cols=217 Identities=24% Similarity=0.281 Sum_probs=177.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 45677766552 02359999999999999999999999999999999999875 45899999998754
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000523 927 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 995 (1445)
Q Consensus 927 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1445)
. ..+++.++|++|++.+++.+||+||+.+...... .........+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999988999999999976421100 00011223345678899999998766654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEec
Q 000523 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 996 ~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ .+.+.+|++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 47788999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 789988875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=340.39 Aligned_cols=215 Identities=25% Similarity=0.340 Sum_probs=180.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|+++.++ ++..+|+|+|++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 367888887763 12359999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ...++.+||++|++. .++..||.|++.|..... .......++.++++++.++|.+..+.. +..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCH
Confidence 43 223567999999863 445689999998864322 233344455688999999998877766 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 46788999999985 799999
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 985
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=335.59 Aligned_cols=212 Identities=27% Similarity=0.368 Sum_probs=178.4
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 45677776652 2469999999999999999999999999999999999875 45899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000523 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006 (1445)
Q Consensus 927 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1445)
. ..+.+||++|++.+++.+||.|++.+....+. ....+.++.++++++.++|.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 23458999999988888999999987654321 23334455688999999998776654 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEec-CcEEEEEcCC
Q 000523 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1084 (1445)
Q Consensus 1007 l~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~-gG~~~y~G~~ 1084 (1445)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999987 57888999999985 5899888765
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=331.34 Aligned_cols=203 Identities=31% Similarity=0.434 Sum_probs=170.7
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1445)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 35999999999999999999999999999999999999998 999999999875421 2356999999988888999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.+..+..+... .+....++++++.+||++..++.++
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 9999988654332100 0011235677889999877766554
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .+|+.++|+..++.+.+|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998743 3 566667888888889999999999999
Q ss_pred EEEecChhHH
Q 000523 403 IVYQGPRELV 412 (1445)
Q Consensus 403 iv~~G~~~~~ 412 (1445)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=331.43 Aligned_cols=202 Identities=25% Similarity=0.416 Sum_probs=167.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4899999999999999999999999999999999999998 9999999988765432 35699999999899999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHc-CCcccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (1445)
||+||+.++....+ .. + ....++.+++.+ ++++..++.+
T Consensus 91 t~~~~l~~~~~~~~--~~-----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~---- 130 (222)
T cd03224 91 TVEENLLLGAYARR--RA-----K-----------------------------RKARLERVYELFPRLKERRKQLA---- 130 (222)
T ss_pred cHHHHHHHHhhhcC--ch-----h-----------------------------HHHHHHHHHHHHHhhhhhhhCch----
Confidence 99999988653221 00 0 011233455566 4655555443
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+.+|++++|++
T Consensus 131 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 131 -GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 46999999999999999999999999999999999999999999998754 3 45566678888889999999999999
Q ss_pred CeEEEecChhHHH
Q 000523 401 GQIVYQGPRELVL 413 (1445)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1445)
|++++.|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (222)
T cd03224 208 GRVVLEGTAAELL 220 (222)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=335.16 Aligned_cols=213 Identities=30% Similarity=0.416 Sum_probs=171.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 4999999999999999999999999999999999999998 999999999876543 1357999999988889
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.++..... . ..... .+. . .......++.+++.+||++..++.
T Consensus 92 ~~tv~~~l~~~~~~~~--~---~~~~~------~~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~---- 141 (241)
T cd03256 92 RLSVLENVLSGRLGRR--S---TWRSL------FGL-F--------------PKEEKQRALAALERVGLLDKAYQR---- 141 (241)
T ss_pred cCcHHHHHHhhhcccc--h---hhhhh------ccc-C--------------cHHHHHHHHHHHHHcCChhhhCCC----
Confidence 9999999987542110 0 00000 000 0 001123456788899997665544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.... +.+|+.++|+..++.+++|++++|+
T Consensus 142 -~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l~ 219 (241)
T cd03256 142 -ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYADRIVGLK 219 (241)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 44699999999999999999999999999999999999999999999876433 4556667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+++++.
T Consensus 220 ~G~i~~~~~~~~~~ 233 (241)
T cd03256 220 DGRIVFDGPPAELT 233 (241)
T ss_pred CCEEEeecCHHHhh
Confidence 99999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=338.44 Aligned_cols=206 Identities=21% Similarity=0.357 Sum_probs=171.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 4899999999999999999999999999999999999998 9999999988754321 356999999988888
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||.||+.++..... ... + .+....++.+++.+||++..+..+
T Consensus 98 ~~tv~enl~~~~~~~~-~~~--------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 141 (269)
T PRK11831 98 DMNVFDNVAYPLREHT-QLP--------A------------------------PLLHSTVMMKLEAVGLRGAAKLMP--- 141 (269)
T ss_pred CCCHHHHHHHHHHHcc-CCC--------H------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999987642210 000 0 001123566788999987777654
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+..++.+.+|++++|+
T Consensus 142 --~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiiivsH~~~~~~~~~d~v~~l~ 218 (269)
T PRK11831 142 --SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS-ALGVTCVVVSHDVPEVLSIADHAYIVA 218 (269)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCcEEEEEecCHHHHHHhhCEEEEEE
Confidence 46999999999999999999999999999999999999999999998764 334556667888899999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (269)
T PRK11831 219 DKKIVAHGSAQALQ 232 (269)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=381.24 Aligned_cols=257 Identities=22% Similarity=0.367 Sum_probs=192.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.+...+|+.+..+.+++. ..+....+.+..+|+++||++.++.
T Consensus 308 ~~~~~~~~~ri~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 353 (582)
T PRK11176 308 FQRGMAACQTLFAILDLEQEK-------DEGKRVIERAKGDIEFRNVTFTYPG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHhcCCCcC-------CCCCcCCCCCCCeEEEEEEEEecCC---------------------------
Confidence 345666777777766544330 0011111222346999999998742
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
...++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 354 -----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 425 (582)
T PRK11176 354 -----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQN 425 (582)
T ss_pred -----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccC
Confidence 1124999999999999999999999999999999999999998 9999999999877654 4789999998
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.+| +.|++|||.++..- ....+.+.++++.. + .++.+ -.|+++.||
T Consensus 426 ~~lf-~~Ti~~Ni~~~~~~---~~~~~~i~~al~~~---~------------------------l~~~i--~~lp~Gldt 472 (582)
T PRK11176 426 VHLF-NDTIANNIAYARTE---QYSREQIEEAARMA---Y------------------------AMDFI--NKMDNGLDT 472 (582)
T ss_pred ceee-cchHHHHHhcCCCC---CCCHHHHHHHHHHh---C------------------------cHHHH--HhcccccCc
Confidence 7655 47999999875310 01112222221110 0 11112 236788899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+ +.||||||||++|||+|+++|++++||||||+||+.++..+.+.|++.. .++|+|+ ++|.. +..+.||+
T Consensus 473 ~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~-VtHr~-~~~~~~D~ 547 (582)
T PRK11176 473 VIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEKADE 547 (582)
T ss_pred eeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCCE
Confidence 999875 4699999999999999999999999999999999999999999998753 3455555 45544 66788999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+++++|+++++.+
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999998864
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=338.71 Aligned_cols=203 Identities=26% Similarity=0.335 Sum_probs=169.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC-CCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1445)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4999999999999999999999999999999999999998 9999999998765432 357999999863 55678
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.|+.+..+.. ..+....++++++.+||.+..+..+
T Consensus 96 tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD----------------------------------KDEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 9999999865322110 0011224567889999987666554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.. . +.+|+.++|+..++.+.||+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 3 455666888888999999999999999
Q ss_pred eEEEecChhHH
Q 000523 402 QIVYQGPRELV 412 (1445)
Q Consensus 402 ~iv~~G~~~~~ 412 (1445)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.18 Aligned_cols=197 Identities=27% Similarity=0.415 Sum_probs=166.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 4999999999999999999999999999999999999998 9999999988754 23467999999988888999999
Q ss_pred HHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCC
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1445)
|+.+..+..+... .+....++++++.+||++..++.+ +.||
T Consensus 90 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (210)
T cd03269 90 QLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EELS 130 (210)
T ss_pred HHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhCC
Confidence 9988654322100 001124567888999987666544 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1445)
Q Consensus 326 GGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1445)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999998754 3 4566668888889999999999999999987
Q ss_pred ec
Q 000523 406 QG 407 (1445)
Q Consensus 406 ~G 407 (1445)
.|
T Consensus 209 ~~ 210 (210)
T cd03269 209 YG 210 (210)
T ss_pred cC
Confidence 65
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=339.64 Aligned_cols=208 Identities=25% Similarity=0.343 Sum_probs=174.5
Q ss_pred ccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCC
Q 000523 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (1445)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1445)
...++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 4456999999999999999999999999999999999999998 9999999988754322 24699999998
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
.+++.+||+||+.+.....+... .+....++++++.+||++..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCC
Confidence 88889999999988654322100 00112356788999998777765
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++.+++|++
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL-QKTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEE
Confidence 54 599999999999999999999999999999999999999999999876533 445666788888899999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|++|++++.|+.+++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=342.88 Aligned_cols=218 Identities=26% Similarity=0.300 Sum_probs=179.7
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+.... .....+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67888988874210 011359999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000523 927 Q-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 997 (1445)
Q Consensus 927 ~-------~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1445)
. ...++.+|||+|++. .+...||.||+.|+.... ..+.++.++.++++++.++|. +..+.. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999862 233479999999875432 233444456789999999996 555554 46
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999764 899999999987 57888999999985 8
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=333.87 Aligned_cols=205 Identities=28% Similarity=0.429 Sum_probs=171.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 4999999999999999999999999999999999999998 9999999998764332 357899999998999999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcc--cccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTMVGDEM 320 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~~ 320 (1445)
|+||+.++.+..+... .+....++++++.+||++ ..++ .
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~-----~ 132 (242)
T cd03295 92 VEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADR-----Y 132 (242)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhc-----C
Confidence 9999988654322100 001123567788999975 4443 4
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+..++.+++|+|++|++
T Consensus 133 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~g~tvii~sH~~~~~~~~~d~i~~l~~ 211 (242)
T cd03295 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ-ELGKTIVFVTHDIDEAFRLADRIAIMKN 211 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 456999999999999999999999999999999999999999999998765 3245566677888889999999999999
Q ss_pred CeEEEecChhHHH
Q 000523 401 GQIVYQGPRELVL 413 (1445)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1445)
|++++.|+.+++.
T Consensus 212 G~i~~~~~~~~~~ 224 (242)
T cd03295 212 GEIVQVGTPDEIL 224 (242)
T ss_pred CEEEEecCHHHHH
Confidence 9999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.71 Aligned_cols=208 Identities=32% Similarity=0.477 Sum_probs=174.6
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
.++|+++.+. ++.+|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 4667766652 236999999999999 999999999999999999999876 458999999987543
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 928 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 928 --~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
...++.++|++|++.+++.+||.|++.+....+. ...++.++.++++++.+++.+..++. +..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHH
Confidence 2345679999999999999999999988655432 22233345678999999998776665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |+++..|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999976 599999999986 46778999999986 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=333.21 Aligned_cols=203 Identities=25% Similarity=0.367 Sum_probs=168.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-----CCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL-----DPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d 235 (1445)
++|+|+|+++++||+++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 4999999999999999999999999999999999999 887 999999999875432 235799999998
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
.++ .+||+||+.++.+..+.... .+....++++++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhcc
Confidence 777 89999999886543211000 00112356778899998665543
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
+. +..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . ++|+.++|+..++.+.||++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEE
Confidence 20 357999999999999999999999999999999999999999999998754 3 56666888888999999999
Q ss_pred EEecCCeEEEecChhH
Q 000523 396 ILLSDGQIVYQGPREL 411 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (1445)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=390.32 Aligned_cols=261 Identities=22% Similarity=0.275 Sum_probs=195.7
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCC-CCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI-DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1445)
.++.+..++|+.++++.++|.-......+...... +.....++++||++.++.
T Consensus 436 ~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-------------------------- 489 (710)
T TIGR03796 436 LQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC--------------------------
Confidence 56788889999988877655200000000000000 112357999999999842
Q ss_pred hcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 000523 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1445)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 233 (1445)
...++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|
T Consensus 490 ------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 490 ------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred ------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 1124899999999999999999999999999999999999998 9999999999877654 578999999
Q ss_pred CCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
++.++ +.|++|||.++. +....+.+.++++.. + .++. +-.++.+.|
T Consensus 561 ~~~lf-~gTi~eNi~l~~----~~~~~~~i~~al~~~---~------------------------l~~~--i~~lp~gl~ 606 (710)
T TIGR03796 561 DIFLF-EGTVRDNLTLWD----PTIPDADLVRACKDA---A------------------------IHDV--ITSRPGGYD 606 (710)
T ss_pred CChhh-hccHHHHhhCCC----CCCCHHHHHHHHHHh---C------------------------CHHH--HHhCcCccc
Confidence 77555 579999998752 111122222222111 0 1111 224677889
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
|.+|+.+ .+||||||||++|||||+++|++++||||||+||+.++..+.+.|++ .++|+|+ ++|.. ++...+|
T Consensus 607 t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D 679 (710)
T TIGR03796 607 AELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCD 679 (710)
T ss_pred ceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCC
Confidence 9999876 47999999999999999999999999999999999999999999975 3455555 55544 5567799
Q ss_pred eEEEecCCeEEEecChhHHHH
Q 000523 394 DIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1445)
+|++|++|+++++|+++++++
T Consensus 680 ~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 680 EIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=344.87 Aligned_cols=216 Identities=22% Similarity=0.411 Sum_probs=173.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc-------------------Cccc
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------------------VPQR 226 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~~ 226 (1445)
++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.+. ..++
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHh
Confidence 4999999999999999999999999999999999999998 99999999887532 1246
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHH
Q 000523 227 TAAYISQHDN-HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305 (1445)
Q Consensus 227 ~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~ 305 (1445)
.++||+|++. .+...||+||+.|+....+.. . .+...+++++++.
T Consensus 117 ~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~ 162 (320)
T PRK13631 117 RVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLNK 162 (320)
T ss_pred cEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHHH
Confidence 7999999862 344569999998875322110 0 0112245678889
Q ss_pred cCCc-ccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 000523 306 LGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (1445)
Q Consensus 306 lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~ 384 (1445)
+||+ ...+ +.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+
T Consensus 163 ~gL~~~~~~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtHd 235 (320)
T PRK13631 163 MGLDDSYLE-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITHT 235 (320)
T ss_pred cCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecC
Confidence 9996 3344 34457999999999999999999999999999999999999999999998753 3 4556668888
Q ss_pred chhHHhhcCeEEEecCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000523 385 APETYDLFDDIILLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1445)
Q Consensus 385 ~~~~~~~~D~iilL~~G~iv~~G~~~~~~~---~f~~lG~~cp~ 425 (1445)
..++.+.||+|++|++|++++.|+++++.+ .++..|..+|.
T Consensus 236 ~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 236 MEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 888999999999999999999999988742 34445555443
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=352.47 Aligned_cols=208 Identities=27% Similarity=0.451 Sum_probs=175.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+|
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 4999999999999999999999999999999999999998 9999999998866443 467999999988889999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.++..-.. + +.. . ...+...+++++++.+||.+..++.+ +
T Consensus 94 v~e~v~~~~~~~~-~-~~~---------------~-------------~~~~~~~~v~~~le~vgl~~~~~~~~-----~ 138 (402)
T PRK09536 94 VRQVVEMGRTPHR-S-RFD---------------T-------------WTETDRAAVERAMERTGVAQFADRPV-----T 138 (402)
T ss_pred HHHHHHhccchhc-c-ccc---------------C-------------CCHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 9999998642110 0 000 0 00011235678899999987776554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||.|||+|+++|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.++||++++|++|+
T Consensus 139 ~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4456668899999999999999999999
Q ss_pred EEEecChhHHH
Q 000523 403 IVYQGPRELVL 413 (1445)
Q Consensus 403 iv~~G~~~~~~ 413 (1445)
+++.|++++++
T Consensus 217 iv~~G~~~ev~ 227 (402)
T PRK09536 217 VRAAGPPADVL 227 (402)
T ss_pred EEEecCHHHHh
Confidence 99999998864
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=343.47 Aligned_cols=204 Identities=25% Similarity=0.367 Sum_probs=169.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCC------------------------
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------------------------ 221 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------------------------ 221 (1445)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeccccccccccccccccccccccccccc
Confidence 4999999999999999999999999999999999999998 9999999876421
Q ss_pred ---cCccceEEEEcCCC-CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhH
Q 000523 222 ---FVPQRTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297 (1445)
Q Consensus 222 ---~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~ 297 (1445)
...++.++||+|++ ..++..||+||+.|+....+.. .++...
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~ 143 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------------------------------KEEAKK 143 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------------------------------HHHHHH
Confidence 01135799999985 3556689999999875433210 001123
Q ss_pred HHHHHHHHcCCc-ccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 000523 298 ITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376 (1445)
Q Consensus 298 ~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t 376 (1445)
+++++++.+||+ +..+. .+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.
T Consensus 144 ~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~ 216 (305)
T PRK13651 144 RAAKYIELVGLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-GK 216 (305)
T ss_pred HHHHHHHHcCCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CC
Confidence 467788999996 44554 4456999999999999999999999999999999999999999999998753 3 45
Q ss_pred EEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHH
Q 000523 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 377 ~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
+|+.++|+.+++.+.+|+|++|++|++++.|+++++.
T Consensus 217 tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5666889999999999999999999999999998874
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=330.64 Aligned_cols=195 Identities=29% Similarity=0.415 Sum_probs=161.7
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1445)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 35999999999999999999999999999999999999998 9999999998765431 3579999999888
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
++.+||+||+.++....+... .+....++++++.+||++..+..+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999998754322100 001123567889999987666544
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1445)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++. .||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA-GTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHh-hhcEEEE
Confidence 4699999999999999999999999999999999999999999999876423 445555777777776 9999999
Q ss_pred ecCCeE
Q 000523 398 LSDGQI 403 (1445)
Q Consensus 398 L~~G~i 403 (1445)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=330.38 Aligned_cols=201 Identities=25% Similarity=0.345 Sum_probs=166.0
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1445)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 35999999999999999999999999999999999999998 9999999998865432 2469999999888
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
++.+||+||+.+.....+... .+.+.+++++++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 889999999998653321100 001124567889999987666544
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1445)
+.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 469999999999999999999999999999999999999999999987543 34555557777777765 589999
Q ss_pred ecCCeEEEecCh
Q 000523 398 LSDGQIVYQGPR 409 (1445)
Q Consensus 398 L~~G~iv~~G~~ 409 (1445)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=377.94 Aligned_cols=253 Identities=19% Similarity=0.229 Sum_probs=194.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.....+|+.++++.+++. . +....+....+++|+|+++.++.
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~------~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 352 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQ------Y--GNDDRPLQSGRIDIDNVSFAYRD--------------------------- 352 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCcc------C--CCCccCCCCCeEEEEEEEEEeCC---------------------------
Confidence 467778888888877655431 0 00011112346999999998731
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
+ .++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|+
T Consensus 353 ---~---~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~ 423 (592)
T PRK10790 353 ---D---NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423 (592)
T ss_pred ---C---CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccC
Confidence 1 23899999999999999999999999999999999999998 9999999999887654 4789999998
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.+|+ .|++|||.++.. ...+.+.++++. .+ .++.++ .|+++.||
T Consensus 424 ~~lF~-~Ti~~NI~~~~~-----~~d~~i~~a~~~---~g------------------------l~~~i~--~lp~Gldt 468 (592)
T PRK10790 424 PVVLA-DTFLANVTLGRD-----ISEEQVWQALET---VQ------------------------LAELAR--SLPDGLYT 468 (592)
T ss_pred Ccccc-chHHHHHHhCCC-----CCHHHHHHHHHH---cC------------------------cHHHHH--hccccccc
Confidence 76666 599999998631 111222222111 11 111222 26778899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+. .||||||||++|||||+++|++++||||||+||+.++..|.+.|+++. .++|+|+. +|.. +....+|+
T Consensus 469 ~i~e~g~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiv-tHr~-~~l~~~D~ 543 (592)
T PRK10790 469 PLGEQGN-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVI-AHRL-STIVEADT 543 (592)
T ss_pred cccCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEE-ecch-HHHHhCCE
Confidence 9998654 699999999999999999999999999999999999999999998864 34566654 4443 66778999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|++++.|+++++.+
T Consensus 544 ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 544 ILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999864
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=318.67 Aligned_cols=206 Identities=27% Similarity=0.379 Sum_probs=179.8
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCccc----ccceEEEeccCCCCCC
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 945 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~d~~~~ 945 (1445)
+...+++|||+++++||++||+||||||||||+|+|+|..+ +..|+|.++|.++.... .+.-++..+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 45689999999999999999999999999999999999876 56899999999875422 2445788999999999
Q ss_pred CCCHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhC
Q 000523 946 FVTIYESLLFSAWLRL--------SPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1016 (1445)
Q Consensus 946 ~lTv~E~l~f~~~lr~--------~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~ 1016 (1445)
.+||.||+..++..+. +.. ...++..++..++++.+||.+.+|...| +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998755331 111 1234455678899999999999999854 6999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1017 p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|++|+||||.+||.+.....+.+.|+++.+ .|.||+++-|+++. ++.+||||++|+. |+++..|++
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P 234 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTP 234 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCH
Confidence 999999999999999999999999999987 47999999999985 9999999999986 799999997
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=334.68 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=180.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 477888887763 2469999999999999999999999999999999999876 4589999999765
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 000523 926 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-Q 988 (1445)
Q Consensus 926 ~~----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 988 (1445)
.. ..+++.++|++|++.+++.+||+||+.+...... .......++++.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1345679999999999999999999987542111 123344456688999999997653 4
Q ss_pred ccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhce
Q 000523 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1068 (1445)
Q Consensus 989 ~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~ 1068 (1445)
.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|+++ ++.+.+|+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 33 4679999999999999999999999999999999999999999999999877999999999986 57778999
Q ss_pred EeEEecCcEEEEEcCC
Q 000523 1069 LFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1069 v~~l~~gG~~~y~G~~ 1084 (1445)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 799999875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=328.40 Aligned_cols=208 Identities=24% Similarity=0.312 Sum_probs=174.1
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 45678877662 12369999999999999999999999999999999999875 45899999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. .+++.++|++|++.+++..|+.|++.+....+ ....++.++.++++++.+++.+..+.. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 13567999999998888999999998865443 123334445678899999998766655 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999777899999999986 47778999999986 565
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=377.91 Aligned_cols=256 Identities=24% Similarity=0.379 Sum_probs=192.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++..+.++|+.++++.+++ ..+..+ ........+++|+||++.++.
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~-----~~~~~~-~~~~~~~~~i~~~~v~f~y~~--------------------------- 350 (574)
T PRK11160 304 LGQVIASARRINEITEQKPE-----VTFPTT-STAAADQVSLTLNNVSFTYPD--------------------------- 350 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCC-----CCCCcc-cCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 45667788888887776554 111000 001122457999999999732
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
.+.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 351 -----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 422 (574)
T PRK11160 351 -----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQR 422 (574)
T ss_pred -----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEccc
Confidence 1124899999999999999999999999999999999999998 9999999999887654 4679999998
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.++ +.|++||+.++.. ....+.+.++.+. .+ .++. .-. +++.||
T Consensus 423 ~~lf-~~ti~~Ni~~~~~----~~~~~~i~~al~~---~~------------------------l~~~--i~~-p~GldT 467 (574)
T PRK11160 423 VHLF-SATLRDNLLLAAP----NASDEALIEVLQQ---VG------------------------LEKL--LED-DKGLNA 467 (574)
T ss_pred chhh-cccHHHHhhcCCC----ccCHHHHHHHHHH---cC------------------------CHHH--HcC-ccccCc
Confidence 7555 5699999988631 1111111111111 00 0111 123 677899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+. .||||||||++|||+++++|++|+|||||++||+.++..+.+.|++.. .++|+|+ ++|..+ ....+|+
T Consensus 468 ~vge~g~-~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tvii-itHr~~-~~~~~d~ 542 (574)
T PRK11160 468 WLGEGGR-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLM-ITHRLT-GLEQFDR 542 (574)
T ss_pred hhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEE-EecChh-HHHhCCE
Confidence 9998654 699999999999999999999999999999999999999999998863 3456555 444444 4567999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|++++.|+++++++
T Consensus 543 i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 543 ICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999865
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=389.22 Aligned_cols=257 Identities=24% Similarity=0.307 Sum_probs=196.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.+..++|+.++++.++|. .+..+....+....+|+|+||++.++.
T Consensus 438 ~~~~~~~~~ri~~~l~~~~e~-----~~~~~~~~~~~~~~~I~~~~vsf~y~~--------------------------- 485 (708)
T TIGR01193 438 LQAARVANNRLNEVYLVDSEF-----INKKKRTELNNLNGDIVINDVSYSYGY--------------------------- 485 (708)
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cccccccCCCCCCCcEEEEEEEEEcCC---------------------------
Confidence 567788889998888766551 100000111223457999999999731
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
..++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|+
T Consensus 486 ------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 486 ------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred ------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecC
Confidence 124899999999999999999999999999999999999998 9999999999877654 4789999998
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.+| +.||+|||.++.+. ....+.+.++++.. + .++. +..++.+.||
T Consensus 557 ~~lf-~gTI~eNi~l~~~~---~~~~~~i~~a~~~a---~------------------------l~~~--i~~lp~gldt 603 (708)
T TIGR01193 557 PYIF-SGSILENLLLGAKE---NVSQDEIWAACEIA---E------------------------IKDD--IENMPLGYQT 603 (708)
T ss_pred ceeh-hHHHHHHHhccCCC---CCCHHHHHHHHHHh---C------------------------CHHH--HHhcccccCc
Confidence 7655 56999999986311 11112222222111 0 1111 2247788899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.||+.+ .+||||||||++||||++++|++|+||||||+||+.++..+.+.|++. .++|+|+ ++|.. ++.+.+|+
T Consensus 604 ~i~e~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~Ii-itHr~-~~~~~~D~ 677 (708)
T TIGR01193 604 ELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIF-VAHRL-SVAKQSDK 677 (708)
T ss_pred EecCCC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEE-Eecch-HHHHcCCE
Confidence 999865 469999999999999999999999999999999999999999999863 3455554 55544 46688999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|++++.|+++++++
T Consensus 678 i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 678 IIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=333.15 Aligned_cols=214 Identities=27% Similarity=0.376 Sum_probs=180.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 66778877653 2469999999999999999999999999999999999875 45899999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 927 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 927 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
.. ..++.++|++|++.+++.+||.||+.+....+. ....++.+..++++++.+++.+..+.. ++.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 134679999999988888999999987643321 122334455688899999998766554 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||||++||++|+.+|++|+|||||+|||+.++..+.+.++++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998777999999999986 58889999999985 7999998
Q ss_pred CC
Q 000523 1083 PL 1084 (1445)
Q Consensus 1083 ~~ 1084 (1445)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 85
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=344.93 Aligned_cols=256 Identities=27% Similarity=0.395 Sum_probs=201.4
Q ss_pred hhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcC
Q 000523 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIP 159 (1445)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 159 (1445)
.++.+-+|+-+.+++.++ +.+++.++-|+..+..|++++-- +
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~--------~~~~m~LP~P~g~L~Ve~l~~~P-P----------------------------- 345 (580)
T COG4618 304 AARQSYKRLNELLAELPA--------AAERMPLPAPQGALSVERLTAAP-P----------------------------- 345 (580)
T ss_pred HHHHHHHHHHHHHHhCcc--------ccCCCCCCCCCceeeEeeeeecC-C-----------------------------
Confidence 344444555554444443 33467788899999999999731 1
Q ss_pred CccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCcc---ceEEEEcCCCC
Q 000523 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDN 236 (1445)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~ 236 (1445)
..++++|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||.+++++++. +.+||.||+ .
T Consensus 346 --g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQd-V 419 (580)
T COG4618 346 --GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQD-V 419 (580)
T ss_pred --CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCccc-c
Confidence 12356999999999999999999999999999999999999998 99999999999888764 789999995 4
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1445)
-++..||.|||. |+.. ....+.+.++++.... .+ =++.|++++||.|
T Consensus 420 eLF~GTIaeNIa---Rf~~-~~d~~kIieAA~lAgv---------------------------He--lIl~lP~GYdT~i 466 (580)
T COG4618 420 ELFDGTIAENIA---RFGE-EADPEKVIEAARLAGV---------------------------HE--LILRLPQGYDTRI 466 (580)
T ss_pred eecCCcHHHHHH---hccc-cCCHHHHHHHHHHcCh---------------------------HH--HHHhCcCCccCcc
Confidence 455579999995 3321 1122233333332211 11 1678999999999
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
|+.+. +||||||||+++||||+++|.+++||||-|.||+..+..+.+.|.+... .++++|+. + |++.+...+|+|+
T Consensus 467 G~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvvi-a-HRPs~L~~~Dkil 542 (580)
T COG4618 467 GEGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVI-A-HRPSALASVDKIL 542 (580)
T ss_pred CCCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEE-e-cCHHHHhhcceee
Confidence 98765 6999999999999999999999999999999999999999999988643 45555553 3 4678999999999
Q ss_pred EecCCeEEEecChhHHHHHH
Q 000523 397 LLSDGQIVYQGPRELVLEFF 416 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f 416 (1445)
+|++|++..+|+++|++...
T Consensus 543 vl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 543 VLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred eecCChHHhcCCHHHHHHHh
Confidence 99999999999999998754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=341.00 Aligned_cols=205 Identities=21% Similarity=0.324 Sum_probs=169.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCC-C
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDN-H 237 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~-~ 237 (1445)
++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++. .
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 4999999999999999999999999999999999999998 999999999875421 2457999999852 3
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-ccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1445)
+...||.||+.|+....+.. ..+....++++++.+||. +..++.
T Consensus 98 l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~- 142 (286)
T PRK13646 98 LFEDTVEREIIFGPKNFKMN----------------------------------LDEVKNYAHRLLMDLGFSRDVMSQS- 142 (286)
T ss_pred cchhhHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhCC-
Confidence 34469999999865322110 001122456788999996 455543
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.+.+|+|+
T Consensus 143 ----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvl~vtH~~~~~~~~~dri~ 217 (286)
T PRK13646 143 ----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT-DENKTIILVSHDMNEVARYADEVI 217 (286)
T ss_pred ----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHhCCEEE
Confidence 456999999999999999999999999999999999999999999998754 335666668888899999999999
Q ss_pred EecCCeEEEecChhHHH
Q 000523 397 LLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1445)
+|++|++++.|+++++.
T Consensus 218 ~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 218 VMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988764
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=340.76 Aligned_cols=217 Identities=25% Similarity=0.347 Sum_probs=179.7
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.++... ...+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56888888874110 011359999999999999999999999999999999999876 45899999998863
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000523 927 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 996 (1445)
Q Consensus 927 ~-------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1445)
. ..+++.+||++|++ .+++ .||.|++.|..... ..+.++.++++.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23456799999986 3444 69999999875432 233455566788999999996 455544 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 679999999999999999999999999999999999999999999999877999999999986 57788999999985 8
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999986
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=330.57 Aligned_cols=217 Identities=24% Similarity=0.280 Sum_probs=172.1
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+... .....+|+|+|++|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4567777765310 001369999999999999999999999999999999999875 45899999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000523 927 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 997 (1445)
Q Consensus 927 ~------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1445)
. ..+++.++|++|++ .+.+.+||+||+.+........ ...+..+..++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 4667899999998865433211 11111122235788999985 455544 35
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 56678999999985 7
Q ss_pred EEEEEc
Q 000523 1077 QEIYVG 1082 (1445)
Q Consensus 1077 ~~~y~G 1082 (1445)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=330.07 Aligned_cols=205 Identities=26% Similarity=0.382 Sum_probs=169.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc--cceEEEEcCCCCCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lTV 243 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+||
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 4999999999999999999999999999999999999998 9999999988754322 2579999999888889999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.+.....+... .+....++++++.+||++..++.++ .
T Consensus 92 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 132 (236)
T TIGR03864 92 RQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR-----E 132 (236)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 999987643321100 0011235667889999876665554 5
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +.+++.++|+..++. .+|++++|++|++
T Consensus 133 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~-~~d~i~~l~~G~i 210 (236)
T TIGR03864 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ-GLSVLWATHLVDEIE-ADDRLVVLHRGRV 210 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecChhhHh-hCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999876433 445555777777776 4999999999999
Q ss_pred EEecChhHHHH
Q 000523 404 VYQGPRELVLE 414 (1445)
Q Consensus 404 v~~G~~~~~~~ 414 (1445)
++.|+.+++.+
T Consensus 211 ~~~~~~~~~~~ 221 (236)
T TIGR03864 211 LADGAAAELRG 221 (236)
T ss_pred EEeCCHHHHHH
Confidence 99999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=342.44 Aligned_cols=218 Identities=25% Similarity=0.309 Sum_probs=179.6
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 67888888874210 011359999999999999999999999999999999999876 35799999986531
Q ss_pred ---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 000523 927 ---------------------------QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 978 (1445)
Q Consensus 927 ---------------------------~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l 978 (1445)
....++.+|||+|++ ..+...||+|++.|+.... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 3344579999999875432 234455566789999
Q ss_pred HHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000523 979 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057 (1445)
Q Consensus 979 ~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq 1057 (1445)
+.+||. +..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566654 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred ccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1058 PSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1058 ps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
++ .+.+.+|++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 57789999999985 799999986
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=314.04 Aligned_cols=202 Identities=24% Similarity=0.391 Sum_probs=185.4
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
+++.+++|+||.++||+++|++|+|||||||++++|.|... +.+|+|.++|.+.++. .+.++||.|.+.-++|.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhccCccCcH
Confidence 45789999999999999999999999999999999999887 5689999999988754 34568999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgL 1029 (1445)
.|.|.|-|.++. ++.++.++.++.+|+.+++....... ++.||.|++|++.+-.+++++|.+++||||+|||
T Consensus 90 ~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 999999998874 56677777899999999999888776 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
||.+.+.+.+.+.++.+.|.|||+++|++. .+-++||++++|++ |+.|.+|+.
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999986 68999999999985 799999986
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=327.18 Aligned_cols=206 Identities=24% Similarity=0.344 Sum_probs=172.8
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
.++|+++.++ ++.+|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4667776653 2469999999999999999999999999999999999875 458999999987632
Q ss_pred -----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 928 -----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 928 -----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
...++.++|++|++.+++.+|+.|++.+...... ....++.++.++++++.+++.+..+.. +..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHH
Confidence 2345679999999998999999999987643111 122334455678899999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877899999999986 57788999999986 44
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=335.29 Aligned_cols=212 Identities=27% Similarity=0.369 Sum_probs=170.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 4999999999999999999999999999999999999998 999999998875432 2457999999988899
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.++..... .. ..... +. ...+....++++++.+||.+..+..
T Consensus 93 ~~tv~~~l~~~~~~~~--~~---~~~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~---- 142 (243)
T TIGR02315 93 RLTVLENVLHGRLGYK--PT---WRSLL------GR---------------FSEEDKERALSALERVGLADKAYQR---- 142 (243)
T ss_pred cccHHHHHhhcccccc--cc---hhhhh------cc---------------ccHHHHHHHHHHHHHcCcHhhhcCC----
Confidence 9999999987532100 00 00000 00 0001123456788999998666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||++++|+
T Consensus 143 -~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~ 220 (243)
T TIGR02315 143 -ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGLK 220 (243)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 4469999999999999999999999999999999999999999999987643 34556667888888999999999999
Q ss_pred CCeEEEecChhHH
Q 000523 400 DGQIVYQGPRELV 412 (1445)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1445)
+|++++.|+++++
T Consensus 221 ~G~i~~~~~~~~~ 233 (243)
T TIGR02315 221 AGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEecCCHHHh
Confidence 9999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=344.51 Aligned_cols=208 Identities=23% Similarity=0.251 Sum_probs=174.0
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCC--C
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1445)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 46999999999999999999999999999999999999998 9999999998865432 35799999987 5
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-cccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1445)
+++.+||.||+.+..+..+.+.. ..+....++++++.+||+ +..+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~--------------------------------~~~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLS--------------------------------RQEVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC--------------------------------HHHHHHHHHHHHHHcCCChHHhc--
Confidence 78899999999886543210000 001123456788999994 3344
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
+.+..|||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+ ..+++++.++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR-EMGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEE
Confidence 44557999999999999999999999999999999999999999999998765 33566777899999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|.+|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=328.77 Aligned_cols=199 Identities=27% Similarity=0.421 Sum_probs=164.4
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCC--CCCCH
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTI 949 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~--~~lTv 949 (1445)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.++|++|++.+. ...||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999865 45899999997653 2456799999997663 34799
Q ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000523 950 YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1445)
Q Consensus 950 ~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsg 1028 (1445)
.||+.+....+.. .....+..++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 0011223345678999999998766665 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1029 LD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877899999999986 57788999999975 4 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=332.48 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=177.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcCc
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 923 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1445)
++++|+++.+. +..+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 46778877653 235999999999999999999999999999999999986531 12899999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000523 924 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGLP 994 (1445)
Q Consensus 924 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 994 (1445)
+... ...++.++|++|++.+++ .|++||+.+....+. .....+.++.++++++.++|. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999988888 999999988654431 122334455688999999997 444443
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999999876 489999999986 57788999999986
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 789999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=343.79 Aligned_cols=218 Identities=25% Similarity=0.342 Sum_probs=180.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 488999998875210 012359999999999999999999999999999999999876 4589999999765
Q ss_pred Cc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000523 926 KQ-------------------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984 (1445)
Q Consensus 926 ~~-------------------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~ 984 (1445)
.. ...++.+|||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13457799999986 3454 59999998864322 223444455688999999996
Q ss_pred -ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHH
Q 000523 985 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1063 (1445)
Q Consensus 985 -~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~ 1063 (1445)
+..+.. +..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 4579999999999999999999999999999999999999999999998777999999999986 477
Q ss_pred HhhceEeEEecCcEEEEEcCC
Q 000523 1064 EAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1064 ~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999986 799999985
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=339.21 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=181.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|+++.++ +++.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 478899988773 12359999999999999999999999999999999999876 4689999999876
Q ss_pred Cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000523 926 KQ-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 999 (1445)
Q Consensus 926 ~~-----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1445)
.. ..+++.+||++|++. .....||+|++.+..... ..+.++.++.++++++.++|.+..+.. ++.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 234567999999874 334579999998864322 223444456688999999998877765 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 1000 SgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
|||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999986 46678999999986 799
Q ss_pred EEEcCC
Q 000523 1079 IYVGPL 1084 (1445)
Q Consensus 1079 ~y~G~~ 1084 (1445)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999986
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=326.70 Aligned_cols=197 Identities=25% Similarity=0.358 Sum_probs=170.8
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHH
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 951 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 951 (1445)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 469999999999999999999999999999999999875 46899999998764322 256899999998888899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000523 952 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031 (1445)
Q Consensus 952 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~ 1031 (1445)
++.+....+. .. ++.+.++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654432 11 23467899999998877665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCC
Q 000523 1032 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1032 ~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~ 1085 (1445)
.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|+..
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999777899999999986 57788999999985 7999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=407.27 Aligned_cols=263 Identities=21% Similarity=0.290 Sum_probs=199.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCC-----CCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHH
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-----LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDIL 152 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 152 (1445)
.+.+++..+|+.++++..++ +..+ +.-+.+ ....+|+|+||++.|..
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~-----~~~~-~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---------------------- 1177 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSN-----IDVR-DNGGIRIKNKNDIKGKIEIMDVNFRYIS---------------------- 1177 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCc-----CCCC-CCcccccccCCCCCceEEEEEEEEECCC----------------------
Confidence 56778888998888876543 1100 111111 12357999999999842
Q ss_pred hhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---------------------------
Q 000523 153 NYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--------------------------- 205 (1445)
Q Consensus 153 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--------------------------- 205 (1445)
+ +..+||+|+|++|+||+.+||+||||||||||+++|+|+++|+
T Consensus 1178 --------~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1178 --------R-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred --------C-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 1 1235999999999999999999999999999999999999982
Q ss_pred ------------------------CCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCc
Q 000523 206 ------------------------LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1445)
Q Consensus 206 ------------------------~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1445)
...+|+|++||+++++... ++.++||+|++.+| +.||+|||.++.. ..
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~----~a 1323 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE----DA 1323 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC----CC
Confidence 0138999999999987764 57899999987555 6899999999731 12
Q ss_pred hhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHH
Q 000523 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1445)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL 338 (1445)
..+.+.++++.... ++. +-.|++++||.||+.+. .||||||||++|||||
T Consensus 1324 t~eeI~~A~k~A~l---------------------------~~f--I~~LP~GydT~VGe~G~-~LSGGQkQRIaIARAL 1373 (1466)
T PTZ00265 1324 TREDVKRACKFAAI---------------------------DEF--IESLPNKYDTNVGPYGK-SLSGGQKQRIAIARAL 1373 (1466)
T ss_pred CHHHHHHHHHHcCC---------------------------HHH--HHhCccccCCccCCCCC-cCCHHHHHHHHHHHHH
Confidence 22333333322111 111 33689999999998665 5999999999999999
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC----CeEE-EecChhHHH
Q 000523 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD----GQIV-YQGPRELVL 413 (1445)
Q Consensus 339 ~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~----G~iv-~~G~~~~~~ 413 (1445)
+++|+||+||||||+||+.++..|.+.|++.....++|+|+ +.|.. ++.+.||+|++|++ |+++ ++|++++++
T Consensus 1374 lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIi-IaHRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT-IAHRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEE-EechH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999998864223455555 45543 66788999999999 9955 899999986
Q ss_pred H
Q 000523 414 E 414 (1445)
Q Consensus 414 ~ 414 (1445)
+
T Consensus 1452 ~ 1452 (1466)
T PTZ00265 1452 S 1452 (1466)
T ss_pred h
Confidence 4
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=385.84 Aligned_cols=256 Identities=22% Similarity=0.344 Sum_probs=190.6
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.....+|+.+.++.+++. .+. .....+.....|+|+||++.++.
T Consensus 444 ~~~~~~a~~ri~~~l~~~~~~-----~~~-~~~~~~~~~~~I~~~nVsf~Y~~--------------------------- 490 (711)
T TIGR00958 444 MMQAVGASEKVFEYLDRKPNI-----PLT-GTLAPLNLEGLIEFQDVSFSYPN--------------------------- 490 (711)
T ss_pred HHHHHHHHHHHHHHhCCCCCC-----CCC-CCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 567777888888887765441 100 00000112346999999999842
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
+ +++++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 491 ---~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 563 (711)
T TIGR00958 491 ---R-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQE 563 (711)
T ss_pred ---C-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecC
Confidence 0 1235999999999999999999999999999999999999998 9999999999877654 4789999997
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.++ +.|++|||.++..- ...+.+.++++. ++ .++.+ -.|+++.||
T Consensus 564 ~~lF-~gTIreNI~~g~~~----~~~e~i~~al~~---a~------------------------l~~~i--~~lp~GldT 609 (711)
T TIGR00958 564 PVLF-SGSVRENIAYGLTD----TPDEEIMAAAKA---AN------------------------AHDFI--MEFPNGYDT 609 (711)
T ss_pred cccc-ccCHHHHHhcCCCC----CCHHHHHHHHHH---cC------------------------CHHHH--HhCCCccCC
Confidence 7555 57999999986321 111122221111 11 01112 236778899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+ ..||||||||++||||++++|+|++||||||+||+.++..+.+ ... ..++|+|+ ++|.. ++.+.+|+
T Consensus 610 ~ige~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIi-ItHrl-~~i~~aD~ 682 (711)
T TIGR00958 610 EVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLL-IAHRL-STVERADQ 682 (711)
T ss_pred cccCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEE-EeccH-HHHHhCCE
Confidence 999765 4699999999999999999999999999999999999999988 221 23445444 55554 45678999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+|+++|+++++.+
T Consensus 683 IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 683 ILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEEECCEEEEeeCHHHHHh
Confidence 99999999999999999865
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=329.38 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=176.5
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 45677776653 2469999999999999999999999999999999999875 45899999998754
Q ss_pred cc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 927 QE--TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 927 ~~--~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
.. ...+.++|++|++.+++.+|++|++.+.+..+ ........+.++++++.++|.+..+.. +..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 21 22357999999988888999999998765433 122333445678899999998776665 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++. + +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999975 58999999999863 4 45999999985 78998887
Q ss_pred C
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=325.38 Aligned_cols=194 Identities=27% Similarity=0.407 Sum_probs=164.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc-CccceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-VPQRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 4999999999999999999999999999999999999998 99999999887542 1235799999998888899999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.+.....+. ....++++++.+||++..++.+ +.|
T Consensus 91 e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 127 (208)
T cd03268 91 ENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KGF 127 (208)
T ss_pred HHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hhC
Confidence 999886432110 0113456788899987666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ . +.+++.++|+..++.+.+|++++|++|+++
T Consensus 128 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998764 3 445566788888999999999999999998
Q ss_pred Eec
Q 000523 405 YQG 407 (1445)
Q Consensus 405 ~~G 407 (1445)
+.|
T Consensus 206 ~~g 208 (208)
T cd03268 206 EEG 208 (208)
T ss_pred ecC
Confidence 765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=327.80 Aligned_cols=198 Identities=31% Similarity=0.454 Sum_probs=166.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999998 999999999875421 24679999999988888999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.+..+..+... .+....++++++.+||++..+..+ +.
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 999987643321100 011234567889999987666544 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+.+|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 44566678888899999999999999999
Q ss_pred EEec
Q 000523 404 VYQG 407 (1445)
Q Consensus 404 v~~G 407 (1445)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=339.76 Aligned_cols=217 Identities=22% Similarity=0.326 Sum_probs=179.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67888888874210 011359999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000523 927 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 996 (1445)
Q Consensus 927 ~-------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1445)
. ...++.+|||+|++ .+++ .||.|++.|..... ..+..+.++.++++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 13466799999986 3444 59999999865332 233445556788999999996 566654 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 67999999999999999999999999999999999999999999999975 4899999999986 57788999999985
Q ss_pred cEEEEEcCC
Q 000523 1076 GQEIYVGPL 1084 (1445)
Q Consensus 1076 G~~~y~G~~ 1084 (1445)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 799999985
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=306.17 Aligned_cols=216 Identities=27% Similarity=0.393 Sum_probs=182.6
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++.+|++|++. .+.+|++||++++|||++||+||||||||||||+|+|... +.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 45678888874 3579999999999999999999999999999999999876 45899999999876
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 927 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
+ ...++..+..||+..+....||+|-+.++..-... .....+..+.++++|...++.++.... ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 4 34567779999998887778999999997532211 112223344578899999999887765 35799999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 1004 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 1004 rqRl~iA~~L~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
||||.+||.|+. ++++||||||||.||...+..++++.|++++.|..|+++.||.+. ...++||+++|++ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999986 456999999999999999999999999999999999999999985 6678999999985 89
Q ss_pred EEEEcCCC
Q 000523 1078 EIYVGPLG 1085 (1445)
Q Consensus 1078 ~~y~G~~~ 1085 (1445)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999974
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=333.13 Aligned_cols=206 Identities=21% Similarity=0.277 Sum_probs=176.3
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999988773 2359999999999999999999999999999999999875 4589999999764
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 245679999999988888999999987421 0 1234578899999998776665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 47788999999985 789888774
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=361.91 Aligned_cols=217 Identities=26% Similarity=0.412 Sum_probs=183.1
Q ss_pred CCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcC
Q 000523 843 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 922 (1445)
Q Consensus 843 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g 922 (1445)
-...++|+||++.|+.. ++.++|+|+||+|+|||.|||+||||+||||+.++|.+..+ +.+|+|.+||
T Consensus 462 ~~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG 529 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDG 529 (716)
T ss_pred ccceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 34579999999999864 34679999999999999999999999999999999998776 5689999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCcccccccccCC
Q 000523 923 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----IDEVMELVELNPLRQSLVGLP 994 (1445)
Q Consensus 923 ~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~-----v~~~l~~l~L~~~~~~~vg~~ 994 (1445)
+|+.+ ..+++.+|+|.|+|.+|. -||+||+.|+.. ..+.++.... +.+-+ .++.+-.||.||..
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEK 601 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCc
Confidence 99765 456789999999999986 599999999753 3333332221 22222 25566789999987
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
|. .||||||||++|||||++||+||+|||.||.||+++...|.++|.+..+ ++|||++.|+.| ..+.+|+|+++++
T Consensus 602 G~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 602 GS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK 677 (716)
T ss_pred cc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC
Confidence 64 7999999999999999999999999999999999999999999988765 699999999986 5788999999986
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|.-
T Consensus 678 -G~V~E~G~h 686 (716)
T KOG0058|consen 678 -GRVVEMGTH 686 (716)
T ss_pred -CeEEecccH
Confidence 899999853
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=337.13 Aligned_cols=215 Identities=27% Similarity=0.399 Sum_probs=174.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC-CCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1445)
++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 4899999999999999999999999999999999999998 9999999998865432 357999999863 67778
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||.||+.++.+..+.. ..+....++++++.+||++..++.+
T Consensus 98 tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13635 98 TVQDDVAFGLENIGVP----------------------------------REEMVERVDQALRQVGMEDFLNREP----- 138 (279)
T ss_pred cHHHHHhhhHhhCCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCCc-----
Confidence 9999998865432110 0011234677889999987766554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|+.++|+..++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDLDEAA-QADRVIVMNKG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH-cCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 33455555677777776 59999999999
Q ss_pred eEEEecChhHHHH---HHHhcCCCCC
Q 000523 402 QIVYQGPRELVLE---FFASMGFRCP 424 (1445)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~lG~~cp 424 (1445)
++++.|+.+++.. .+...|..+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 217 EILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred EEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 9999999988753 2334444443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=326.47 Aligned_cols=211 Identities=25% Similarity=0.323 Sum_probs=172.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+... .+.+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4567777766311 012469999999999999999999999999999999999876 45899999998754
Q ss_pred cc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000523 927 QE---T---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 999 (1445)
Q Consensus 927 ~~---~---~~-~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1445)
.. . ++ +.++|++|++.+++.+|++|++.+....+. ....+..+.+.++++.+++.+..+.. +..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHR-----PSEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 21 1 22 569999999988889999999988654331 22233345678899999998776665 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 1000 SgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 55799999986 665
Q ss_pred E
Q 000523 1079 I 1079 (1445)
Q Consensus 1079 ~ 1079 (1445)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=330.42 Aligned_cols=204 Identities=21% Similarity=0.347 Sum_probs=170.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHIGE 240 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~~ 240 (1445)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 4999999999999999999999999999999999999998 999999999875421 13579999999888889
Q ss_pred CCHHHHHHHhHHh-cCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 241 MTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 241 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
+||+||+.++... .+.. ..+....++++++.+||++..|..+
T Consensus 92 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~--- 134 (240)
T PRK09493 92 LTALENVMFGPLRVRGAS----------------------------------KEEAEKQARELLAKVGLAERAHHYP--- 134 (240)
T ss_pred CcHHHHHHhHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChHHHhcCh---
Confidence 9999999875421 1100 0011123567888999986666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
+.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.. . +++++.++|+..++.+++|++++|+
T Consensus 135 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 210 (240)
T PRK09493 135 --SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLIFID 210 (240)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998753 3 4556667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (240)
T PRK09493 211 KGRIAEDGDPQVLI 224 (240)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=326.22 Aligned_cols=193 Identities=26% Similarity=0.380 Sum_probs=163.2
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc---ccccceEEEeccCCC-CCCCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFV 947 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 947 (1445)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999875 458999999987542 234567999999974 36678
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000523 948 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1445)
Q Consensus 948 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTs 1027 (1445)
|++|++.+....+ .......++.++++++.++|.+..+.. +..||||||||++|||+|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765332 122333345678899999998766655 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 577789999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=322.25 Aligned_cols=195 Identities=41% Similarity=0.733 Sum_probs=166.4
Q ss_pred eEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHH
Q 000523 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1445)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1445)
.+.|+||++.++.. +.++.+|+|+|+++++|++++|+|||||||||||++
T Consensus 3 ~~~~~~~~~~~~~~------------------------------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~ 52 (202)
T cd03233 3 TLSWRNISFTTGKG------------------------------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKA 52 (202)
T ss_pred eEEEEccEEEeccC------------------------------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHH
Confidence 47899999998541 133469999999999999999999999999999999
Q ss_pred HhCCCC---CCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHH
Q 000523 198 LAGKLD---PTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1445)
Q Consensus 198 L~G~~~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (1445)
|+|.++ |+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++.+..
T Consensus 53 l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------ 111 (202)
T cd03233 53 LANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------ 111 (202)
T ss_pred hcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------
Confidence 999998 66 999999999876532 2467999999998999999999998753210
Q ss_pred cCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCC
Q 000523 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (1445)
Q Consensus 273 ~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEpts 352 (1445)
.++.+..||||||||++||++|+.+|++++|||||+
T Consensus 112 --------------------------------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~ 147 (202)
T cd03233 112 --------------------------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147 (202)
T ss_pred --------------------------------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCc
Confidence 112334699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEec
Q 000523 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1445)
Q Consensus 353 gLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1445)
|||+.++..+.+.|+++....+.++|+++||+.+++.+.+|++++|++|++++.|
T Consensus 148 ~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 148 GLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999998765335677777788888999999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=333.03 Aligned_cols=204 Identities=25% Similarity=0.376 Sum_probs=170.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc-----------CccceEEEEcCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----------VPQRTAAYISQH 234 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~Q~ 234 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 4899999999999999999999999999999999999998 99999999887532 123579999999
Q ss_pred CCCCCCCCHHHHHHHhHHh-cCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 235 DNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
+.+++.+||+||+.++... .+. . ..+....++++++.+||++..|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGE--P--------------------------------KEEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC--C--------------------------------HHHHHHHHHHHHHHcCCcchhh
Confidence 8888899999999875421 110 0 0011223566788899987666
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+++|
T Consensus 140 ~~-----~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SY-----PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred CC-----hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcC
Confidence 54 446999999999999999999999999999999999999999999998754 3 4456667888889999999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 000523 394 DIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~ 413 (1445)
++++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=330.83 Aligned_cols=212 Identities=22% Similarity=0.335 Sum_probs=177.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-+.++|+++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 377888887763 2469999999999999999999999999999999999875 4589999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCC
Q 000523 926 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 926 ~~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 1000 (1445)
... ..++.++|++|+..+++.+||.||+.+..... .....++.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 23467999999998899899999998764221 1122234466777777 466555543 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 58889999999986 79999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9986
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=338.11 Aligned_cols=216 Identities=24% Similarity=0.312 Sum_probs=181.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|+++.++.. ..+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37788888877421 12359999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.++.++++++.++|.+..+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999973 567789999998865432 234445556789999999998877765 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 35 57999999985 79999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 9985
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=332.04 Aligned_cols=213 Identities=23% Similarity=0.312 Sum_probs=179.1
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5677777663 2469999999999999999999999999999999999876 458999999986532
Q ss_pred ----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000523 928 ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991 (1445)
Q Consensus 928 ----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 991 (1445)
...++.++|++|++.+++..|+.||+.++..... .......++.++++++.+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 1235679999999999999999999987542211 123344455688999999998776655
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEe
Q 000523 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1070 (1445)
Q Consensus 992 g~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~ 1070 (1445)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++...+|+++
T Consensus 144 ----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T TIGR03005 144 ----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVC 218 (252)
T ss_pred ----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 5778899999
Q ss_pred EEecCcEEEEEcCC
Q 000523 1071 LMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1071 ~l~~gG~~~y~G~~ 1084 (1445)
+|++ |++++.|+.
T Consensus 219 ~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 219 FFDK-GRIVEQGKP 231 (252)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 799998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.52 Aligned_cols=216 Identities=24% Similarity=0.280 Sum_probs=178.1
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcCc
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 923 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1445)
+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67788877653 246999999999999999999999999999999999986531 36899999998
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCCC
Q 000523 924 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGLPGV 996 (1445)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~~~ 996 (1445)
++.. ..+++.+||++|++.+++.+||.||+.+....+... ....+..+.++++++.++|.+. .+.. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV-KSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7642 234567999999998888999999998865432111 1223344567889999998642 2332 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999864 899999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 99999875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=325.38 Aligned_cols=191 Identities=28% Similarity=0.380 Sum_probs=160.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCC-CCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN-HIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV~ 244 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+||+
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4999999999999999999999999999999999999998 9999999988754333467999999864 35578999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.++....+ . ....++++++.+||++..++.+ +.|
T Consensus 91 e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 127 (205)
T cd03226 91 EELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERHP-----LSL 127 (205)
T ss_pred HHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCCc-----hhC
Confidence 99987542210 0 0123466788999987766554 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+++.++|+..++.+++|++++|++|+++
T Consensus 128 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 128 SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999999999998754 3 445666788888899999999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=349.38 Aligned_cols=207 Identities=24% Similarity=0.331 Sum_probs=175.7
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1445)
...+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 345899999999999999999999999999999999999998 9999999998865432 247999999999
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1445)
+++.+||+||+.|+.+..+... .+....++++++.+||++..+..+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999998765432110 001124567899999987666544
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.... +++|+.++|+..++.+++|+|+
T Consensus 163 -----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 163 -----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999875433 4556668888999999999999
Q ss_pred EecCCeEEEecChhHHH
Q 000523 397 LLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1445)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988774
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=342.06 Aligned_cols=214 Identities=21% Similarity=0.246 Sum_probs=175.8
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCC--
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD-- 235 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 235 (1445)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 459999999999999999999999999999999999998842238999999999865432 14799999987
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
.+.+.+||.+++.+.....+. .. ..+....+.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~-~~--------------------------------~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG-MS--------------------------------KAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC-CC--------------------------------HHHHHHHHHHHHHHcCCCChHHH-
Confidence 688999999999875433210 00 00112345677889999754322
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
. ++.+..|||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+ ..+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR-EFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEECCHHHHHHhCCEE
Confidence 2 356678999999999999999999999999999999999999999999998865 33566777899999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000523 396 ILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1445)
++|++|+|++.|+.+++.+
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=341.09 Aligned_cols=229 Identities=21% Similarity=0.233 Sum_probs=184.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|++.+++............+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 47888988777532100000000123569999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000523 926 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 996 (1445)
Q Consensus 926 ~~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1445)
... .+++.++||+|++ .++|.+||.|++.+...... ...+.++.++.+.++++.++|. +..+.. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2456799999997 57889999999988654321 1234455666788999999995 344444 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
..||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999764 899999999986 47788999999985
Q ss_pred cEEEEEcCC
Q 000523 1076 GQEIYVGPL 1084 (1445)
Q Consensus 1076 G~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 799999985
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=327.16 Aligned_cols=202 Identities=33% Similarity=0.522 Sum_probs=163.5
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1445)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 459999999999999999999999999999999999998 77 999999998875433457799999999899999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHH-HHHHcCCcccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLDVCADTMVGDEM 320 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~ 320 (1445)
||+||+.|+.......... .. .....++. .++.+++++..++ .
T Consensus 97 tv~enl~~~~~~~~~~~~~---~~----------------------------~~~~~~~~~~l~~~~l~~~~~~-----~ 140 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS---DA----------------------------IRKKRVEDVLLRDLALTRIGGN-----L 140 (226)
T ss_pred cHHHHHHHHHHhhcccccc---hH----------------------------HHHHHHHHHHHHhhcchhhhcc-----c
Confidence 9999999875432210000 00 00011233 6778888765554 4
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCc-hhHHhhcCeEEEec
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-PETYDLFDDIILLS 399 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~-~~~~~~~D~iilL~ 399 (1445)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+. .++.+.+|++++|+
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVIL-TIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE-EecCCCHHHHHhCCEEEEEe
Confidence 456999999999999999999999999999999999999999999998754 3455555 45554 68999999999999
Q ss_pred CCeEEEec
Q 000523 400 DGQIVYQG 407 (1445)
Q Consensus 400 ~G~iv~~G 407 (1445)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=324.79 Aligned_cols=196 Identities=30% Similarity=0.452 Sum_probs=165.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1445)
++|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 4999999999999 99999999999999999999999998 999999998875432 24679999999988999999
Q ss_pred HHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccccc
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1445)
+||+.+..+..+... .+....++++++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKI-----GS 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCch-----hh
Confidence 999988654321100 001123567888999987666655 45
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~i 403 (1445)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. + ++++.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 5666688888889999999999999999
Q ss_pred EEec
Q 000523 404 VYQG 407 (1445)
Q Consensus 404 v~~G 407 (1445)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=332.63 Aligned_cols=217 Identities=22% Similarity=0.269 Sum_probs=179.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 377888887663 2469999999999999999999999999999999999865 4689999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC----------CCC--CHHHHHHHHHHHHHHcCCcccccc
Q 000523 926 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------PEV--DSETRKMFIDEVMELVELNPLRQS 989 (1445)
Q Consensus 926 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~----------~~~--~~~~~~~~v~~~l~~l~L~~~~~~ 989 (1445)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.++++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233489999999999999999999986431110 000 111233457888999999876666
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhce
Q 000523 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1068 (1445)
Q Consensus 990 ~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~ 1068 (1445)
. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 5 3579999999999999999999999999999999999999999999999775 899999999986 57788999
Q ss_pred EeEEecCcEEEEEcCC
Q 000523 1069 LFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1069 v~~l~~gG~~~y~G~~ 1084 (1445)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999985 799999986
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=330.82 Aligned_cols=221 Identities=24% Similarity=0.249 Sum_probs=178.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 367888887763 235999999999999999999999999999999999986532 3589999999
Q ss_pred ccCC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....+..++.++++++.+++.+........ .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 148 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLND-YPS 148 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhcc-Chh
Confidence 8763 123456799999999999999999999886543311 112333445678899999885321111111 146
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~ 225 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 699999999986 57788999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 226 i~~~~~~ 232 (253)
T PRK14267 226 LIEVGPT 232 (253)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=329.25 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=178.5
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 56788877663 2369999999999999999999999999999999999875 45899999998642
Q ss_pred ---------cccccceEEEeccCCCCCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000523 927 ---------QETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996 (1445)
Q Consensus 927 ---------~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~-~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1445)
....++.++|++|++.+++.+||.||+.+. .... .....+..+.+.++++.+|+.+..+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----P 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----h
Confidence 012345799999999999999999999753 2221 122333445678899999998776665 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999998777999999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 99999875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=336.70 Aligned_cols=206 Identities=26% Similarity=0.357 Sum_probs=170.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCC--c---CccceEEEEcCCCC-CCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (1445)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 4999999999999999999999999999999999999998 9999999998741 1 12367999999863 345
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
..||+||+.++....+... .+....++++++.+||.+..|+.
T Consensus 97 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~---- 138 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKP---- 138 (283)
T ss_pred cccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCC----
Confidence 6899999988653221100 01122467788999998766654
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.+.||++++|+
T Consensus 139 -~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 139 -THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4469999999999999999999999999999999999999999999987653 24556667888889999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000523 400 DGQIVYQGPRELVLE 414 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1445)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=337.39 Aligned_cols=218 Identities=24% Similarity=0.295 Sum_probs=179.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+.... ...+.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56788887764110 001359999999999999999999999999999999999876 46899999998753
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000523 927 Q-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 997 (1445)
Q Consensus 927 ~-------~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1445)
. ...++.+||++|++. .+..+||.|++.|..... ....++.+++++++++.++|. +..+.. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PF 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cc
Confidence 2 123457999999963 233589999998865432 123444556788999999997 566665 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~ 222 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GK 222 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999777999999999986 57889999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13641 223 LIKHASP 229 (287)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=335.92 Aligned_cols=213 Identities=23% Similarity=0.320 Sum_probs=178.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.++ +++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 45677776653 12359999999999999999999999999999999999876 46899999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 927 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 927 ~----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
. ...++.+||++|++. .+...|+.||+.+..... ..+..+.++.++++++.++|.+..+.. +..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCH
Confidence 2 234567999999975 356689999998865332 123444456688999999998877765 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 45 66999999986 799999
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 985
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=329.20 Aligned_cols=218 Identities=22% Similarity=0.250 Sum_probs=175.1
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 4677776653 246999999999999999999999999999999999974112468999999987543
Q ss_pred c---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCC--C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCc
Q 000523 928 E---TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSG 998 (1445)
Q Consensus 928 ~---~~-~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~--~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~ 998 (1445)
. .. +..++|++|++.+++.+|++|++.+....... . ..+..+..+.++++++.++|. +..+..++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 12 23489999999999999999999876432211 0 112233345678899999997 35554421 24
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-hceEeEEecCcE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQ 1077 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~-fD~v~~l~~gG~ 1077 (1445)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+... +|++++|++ |+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877899999999986 46666 799999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 223 i~~~g~~ 229 (243)
T TIGR01978 223 IVKSGDV 229 (243)
T ss_pred EEEecCH
Confidence 9999875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=330.84 Aligned_cols=215 Identities=21% Similarity=0.239 Sum_probs=176.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
-+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 578899988763 235999999999999999999999999999999999976532 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 993 (1445)
.++.. ...++.++|++|++..++ .||+||+.+....+.. ......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999987774 8999999886543211 12233445678889988874 233333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46799999999999999999999999999999999999999999999996 4799999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 799999875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=335.03 Aligned_cols=214 Identities=25% Similarity=0.366 Sum_probs=179.8
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++++.. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 567888877631 2359999999999999999999999999999999999876 46899999998764
Q ss_pred c---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 927 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
. ...++.+||++|++. .+...||.|++.+..... ..+.+..++.++++++.++|.+..++. +..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHH
Confidence 3 234567899999963 334679999998765422 233444456688999999998877766 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999986 57789999999986 799999
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 985
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=330.78 Aligned_cols=214 Identities=24% Similarity=0.288 Sum_probs=176.8
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.++++|+++.+. ++.+|+|+|++|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 578889887653 246999999999999999999999999999999999976531 3589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1445)
.++.. ..+++.++|++|++.+++ .|++||+.+....+ ....+..++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 124567999999988877 89999999875432 1233334456788999998843 23332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999864 799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 799999875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.42 Aligned_cols=200 Identities=26% Similarity=0.380 Sum_probs=167.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... .+.++|++|++.+++.+||+|
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHH
Confidence 4999999999999999999999999999999999999998 99999999987542 345899999988888899999
Q ss_pred HHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCC
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1445)
|+.++.+..+... .+....++++++.+||++..++.+ ..||
T Consensus 90 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 130 (255)
T PRK11248 90 NVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQLS 130 (255)
T ss_pred HHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhCC
Confidence 9987643221100 001124567889999987666544 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec--CCeE
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403 (1445)
Q Consensus 326 GGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~--~G~i 403 (1445)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.... +++|+.++|+..++..+||+|++|+ +|++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 999999999999999999999999999999999999999999875433 4556667888899999999999998 5999
Q ss_pred EEecChh
Q 000523 404 VYQGPRE 410 (1445)
Q Consensus 404 v~~G~~~ 410 (1445)
+..++.+
T Consensus 210 ~~~~~~~ 216 (255)
T PRK11248 210 VERLPLN 216 (255)
T ss_pred EEEecCC
Confidence 9988654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=325.88 Aligned_cols=201 Identities=27% Similarity=0.364 Sum_probs=162.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--CC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--NH 237 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999998 999999999876543 235799999987 46
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-ccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1445)
++.+||+||+.+..+..+.....+ .....++++++.++|. ...+..
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~- 142 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKKE--------------------------------ARKEAVLLLLVGVGLPEEVLNRY- 142 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHHH--------------------------------HHHHHHHHHHHHCCCChhHhhCC-
Confidence 678999999988654321100000 0011124567888885 344443
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+.+|+.++|+..++.+.+|+++
T Consensus 143 ----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 143 ----PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEE
Confidence 446999999999999999999999999999999999999999999998764 324455567788888888999999
Q ss_pred EecCCeEEEec
Q 000523 397 LLSDGQIVYQG 407 (1445)
Q Consensus 397 lL~~G~iv~~G 407 (1445)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=345.39 Aligned_cols=208 Identities=25% Similarity=0.312 Sum_probs=175.9
Q ss_pred ccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCc----cCCCcCc-------cceEEEE
Q 000523 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH----DMDEFVP-------QRTAAYI 231 (1445)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~~~-------~~~~~yv 231 (1445)
....+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|+++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3433221 2479999
Q ss_pred cCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccc
Q 000523 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1445)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1445)
+|++.+++.+||+||+.|+....+... .+....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865432210 0112346778999999877
Q ss_pred ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000523 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1445)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1445)
.|..++ .|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.. ..+.+|+.++|+..++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~-~~~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA-KLNKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 766554 5999999999999999999999999999999999999999999998754 3345666688999999999
Q ss_pred cCeEEEecCCeEEEecChhHHH
Q 000523 392 FDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.41 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=178.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. ++.+|+|+|++|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56778877663 2469999999999999999999999999999999999865 45899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 927 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
. ...++.++|++|++.+++.+||+|++.+...... ...+..++.++++++.+++.+..+.. +..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHH
Confidence 2 2234578999999888788999999987543211 11223345678899999998777665 35799999
Q ss_pred HHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 1004 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 1004 rqRl~iA~~L~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++. ++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 56899999999986 57789999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 89998885
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=328.24 Aligned_cols=215 Identities=25% Similarity=0.315 Sum_probs=177.8
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.++ ++.+|+|+|++|++||+++|+|+|||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56777776653 2469999999999999999999999999999999999865 45899999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 927 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P---EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 927 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~--~---~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..++.++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 31 1234699999999999999999999886432110 0 011223445688999999998776665 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999876 789999999986 57788999999986 78
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 9988875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=322.66 Aligned_cols=194 Identities=25% Similarity=0.345 Sum_probs=164.3
Q ss_pred cceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc-cccceEEEeccCCCCCCCCCHHHHHHH
Q 000523 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLF 955 (1445)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f 955 (1445)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 4589999999876431 234679999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000523 956 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1445)
Q Consensus 956 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~ 1035 (1445)
....+. .. .+..++.++++++.++|.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 123345678999999998777765 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1036 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1036 ~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
.+++.|+++++ .|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999875 4899999999986 57788999999985 7877654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.97 Aligned_cols=205 Identities=20% Similarity=0.355 Sum_probs=170.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++.+
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 4999999999999999999999999999999999999998 9999999998765432 35699999998888889
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.+..+..+. .. ..+....++++++.+||++..+.. .
T Consensus 94 tv~enl~~~~~~~~~-~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~ 135 (241)
T PRK10895 94 SVYDNLMAVLQIRDD-LS--------------------------------AEQREDRANELMEEFHIEHLRDSM-----G 135 (241)
T ss_pred cHHHHHhhhhhcccc-cC--------------------------------HHHHHHHHHHHHHHcCCHHHhhcc-----h
Confidence 999999875432110 00 001123456778899997655543 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+.+|++++|++|
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S-GLGVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999988753 3 445555778888999999999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
++++.|+++++.
T Consensus 214 ~i~~~~~~~~~~ 225 (241)
T PRK10895 214 HLIAHGTPTEIL 225 (241)
T ss_pred eEEeeCCHHHHh
Confidence 999999988764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=339.41 Aligned_cols=208 Identities=20% Similarity=0.259 Sum_probs=174.4
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCC--C
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1445)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999999987 9999999998865432 35799999987 5
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcc-ccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1445)
+.+.+||.+++....+.... .. ..+....+.++++.+||+. ..++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~-~~--------------------------------~~~~~~~~~~~l~~~gL~~~~~~~- 150 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS-LS--------------------------------AAERREKALAMMAKVGLRPEHYDR- 150 (327)
T ss_pred cCCccCHHHHHHHHHHHccC-CC--------------------------------HHHHHHHHHHHHHHCCCChHHhcC-
Confidence 88899999999875433210 00 0011234678899999963 4454
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
.+..|||||||||+||+||+.+|++|++||||++||..++.+|++.|+++.+ ..+++++.++|+...+.+++|+|
T Consensus 151 ----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 151 ----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ-ELGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhCCEE
Confidence 4457999999999999999999999999999999999999999999998765 33566777899999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000523 396 ILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1445)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=330.70 Aligned_cols=194 Identities=22% Similarity=0.322 Sum_probs=164.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 3899999999999999999999999999999999999998 9999999977543 2467999999988888899999
Q ss_pred HHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCC
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1445)
|+.++.. . . ....++++++.+||++..+.. +..||
T Consensus 101 nl~~~~~--~---~-----------------------------------~~~~~~~~l~~~gl~~~~~~~-----~~~LS 135 (257)
T PRK11247 101 NVGLGLK--G---Q-----------------------------------WRDAALQALAAVGLADRANEW-----PAALS 135 (257)
T ss_pred HHHhccc--c---h-----------------------------------HHHHHHHHHHHcCChhHhcCC-----hhhCC
Confidence 9987421 0 0 001245678889998766544 44699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1445)
Q Consensus 326 GGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1445)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++.+.+|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999875433 4455667888888999999999999999999
Q ss_pred ecChh
Q 000523 406 QGPRE 410 (1445)
Q Consensus 406 ~G~~~ 410 (1445)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=324.00 Aligned_cols=196 Identities=24% Similarity=0.361 Sum_probs=160.2
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1445)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 45999999999999999999999999999999999999998 9999999998765432 1469999999888
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
++.+||+||+.+......... .+....+.++++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 889999999988643211000 001123466788999986666544
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1445)
+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+..+ .+|+.++|+..++. .+|++++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN-TSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHh-hcCEEEE
Confidence 46999999999999999999999999999999999999999999998764334 44555677777765 4799999
Q ss_pred ecCCeEE
Q 000523 398 LSDGQIV 404 (1445)
Q Consensus 398 L~~G~iv 404 (1445)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=326.58 Aligned_cols=201 Identities=26% Similarity=0.358 Sum_probs=165.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 4999999999999999999999999999999999999998 9999999988765432 35699999999889999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcC-Ccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDEM 320 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~~ 320 (1445)
||+||+.++....+.. . ....+.+++.++ +++..++ .
T Consensus 91 tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~-----~ 128 (230)
T TIGR03410 91 TVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGR-----R 128 (230)
T ss_pred cHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhC-----C
Confidence 9999998865322100 0 001234455554 4443443 3
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
++.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.+ ..+++++.++|+..++.+++|+|++|++
T Consensus 129 ~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~v~~l~~ 207 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA-EGGMAILLVEQYLDFARELADRYYVMER 207 (230)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-cCCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 456999999999999999999999999999999999999999999998754 2345566678888899999999999999
Q ss_pred CeEEEecChhHH
Q 000523 401 GQIVYQGPRELV 412 (1445)
Q Consensus 401 G~iv~~G~~~~~ 412 (1445)
|++++.|+.+++
T Consensus 208 g~i~~~~~~~~~ 219 (230)
T TIGR03410 208 GRVVASGAGDEL 219 (230)
T ss_pred CEEEEECCHHHc
Confidence 999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=330.86 Aligned_cols=217 Identities=25% Similarity=0.342 Sum_probs=179.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 56778877653 2469999999999999999999999999999999999865 45899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 927 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
. ...++.++|++|+..+++.+|+.|++.++...... ........++.++++++.+++.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23445699999998888889999999875311000 0111122345578899999998777765 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777899999999986 58889999999985 7899998
Q ss_pred CCC
Q 000523 1083 PLG 1085 (1445)
Q Consensus 1083 ~~~ 1085 (1445)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 863
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=336.26 Aligned_cols=205 Identities=24% Similarity=0.354 Sum_probs=169.2
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCC-
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDN- 236 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~- 236 (1445)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 34999999999999999999999999999999999999998 99999999987532 11357999999862
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-cccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1445)
.+..+||+||+.|+.+..+.. .++....++++++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------------------------------EDEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHhhCC
Confidence 344689999998865322110 001122456788999996 445544
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+.||++
T Consensus 143 -----~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 -----PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 446999999999999999999999999999999999999999999998743 3 556666889999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=329.42 Aligned_cols=217 Identities=19% Similarity=0.246 Sum_probs=178.6
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.+.++|+++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367888887763 236999999999999999999999999999999999986532 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1445)
.++.. ...++.++|++|+..+++.+||+||+.+....+. .......++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999988654332 1123344556788999998842 22322
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 467999999999999999999999999999999999999999999999864 689999999986 5778899999997
Q ss_pred c-----CcEEEEEcCC
Q 000523 1074 R-----GGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~-----gG~~~y~G~~ 1084 (1445)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4899999885
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=327.80 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=175.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCC---CCCeEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 922 (1445)
.++++|+++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 367788877653 246999999999999999999999999999999999952 2112479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 234567999999988776 6999999886543311 12233345678899999986432111111 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4799999999987 57788999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999985
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.47 Aligned_cols=204 Identities=26% Similarity=0.374 Sum_probs=167.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 4899999999999999999999999999999999999998 999999999876432 2457999999863 67789
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.++....+.. .++....++++++.+||++..++.+
T Consensus 100 tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (271)
T PRK13632 100 TVEDDIAFGLENKKVP----------------------------------PKKMKDIIDDLAKKVGMEDYLDKEP----- 140 (271)
T ss_pred cHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCCc-----
Confidence 9999998864321110 0011224577889999987666554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .++++|+.++|+..++. .+|++++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~-~~d~v~~l~~G 218 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK-TRKKTLISITHDMDEAI-LADKVIVFSEG 218 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEEechhHHh-hCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 33345555666666764 79999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
++++.|+.+++.
T Consensus 219 ~i~~~g~~~~~~ 230 (271)
T PRK13632 219 KLIAQGKPKEIL 230 (271)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=321.22 Aligned_cols=222 Identities=26% Similarity=0.356 Sum_probs=191.3
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1445)
...-++|+|++|+.||+..|||=||||||||+++|.++.+|+ +|+|.++|.++..... ++.++.|+|+..
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345689999999999999999999999999999999999999 9999999999866543 367999999999
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1445)
++|+.||.||..|+.+.+|++.. +.+.++.+.|+..||+...+.++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCc
Confidence 99999999999999999886421 12345677899999998888654
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
++||||+||||.|||||..+|+||+||||+|+|||--+.++.+-|.++-... +.+|+.++|+.+|++++.|||.
T Consensus 163 -----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l-~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 -----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL-KKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred -----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh-CCeEEEEecCHHHHHhccceEE
Confidence 4699999999999999999999999999999999999999998887775544 4556669999999999999999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCCCCCCCChhHHHHhh
Q 000523 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~lG~~cp~~~~~adfl~ev 436 (1445)
+|.+|+|+..|+++|++. .|...-+++|..++
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999974 35554456666544
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=334.33 Aligned_cols=214 Identities=26% Similarity=0.303 Sum_probs=180.1
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 678888877631 12359999999999999999999999999999999999876 45899999998764
Q ss_pred c---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 927 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
. ...++.+||++|++. .++..||.||+.+..... ....++.++.++++++.++|.+..+..+ ..||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHH
Confidence 3 234567999999973 566789999998865432 1233444566899999999988777763 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++.. + ..+|++++|++ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999875 8999999999863 4 46999999985 799999
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|+.
T Consensus 222 g~~ 224 (279)
T PRK13635 222 GTP 224 (279)
T ss_pred CCH
Confidence 985
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=334.03 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=169.6
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCCC-CCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIG 239 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1445)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 35999999999999999999999999999999999999998 999999999875422 2467999999863 344
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
..||.||+.|+....+... .+....++++++.+||++..++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322100 011234677899999987777655
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEE
Confidence 469999999999999999999999999999999999999999999987643 34455556777777765 99999999
Q ss_pred CCeEEEecChhHHHH
Q 000523 400 DGQIVYQGPRELVLE 414 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1445)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999988753
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.09 Aligned_cols=194 Identities=27% Similarity=0.402 Sum_probs=162.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 4999999999999999999999999999999999999998 999999999876532 2357999999998999
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.+.....+.. . ++....++++++.+||++..++.+
T Consensus 92 ~~t~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (214)
T cd03292 92 DRNVYENVAFALEVTGVP--P--------------------------------REIRKRVPAALELVGLSHKHRALP--- 134 (214)
T ss_pred CCcHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcCCHHHhhCCh---
Confidence 999999998875432210 0 001123567788899987666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++++.++|+..++.+++|++++|+
T Consensus 135 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~ 210 (214)
T cd03292 135 --AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIALE 210 (214)
T ss_pred --hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998754 3 4556667888888999999999999
Q ss_pred CCeE
Q 000523 400 DGQI 403 (1445)
Q Consensus 400 ~G~i 403 (1445)
+|++
T Consensus 211 ~G~~ 214 (214)
T cd03292 211 RGKL 214 (214)
T ss_pred CCcC
Confidence 9974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=317.52 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=163.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC-eEEEEEEEcCcc
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 924 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1445)
.++|+|++|.++.+ .+++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999998643 13457999999999999999999999999999999999986532 568999999987
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 925 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 925 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
... ...++.++|++|++.+++.+||+|++.+....+ .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998753211 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777776654468889999999986 788876
Q ss_pred c
Q 000523 1082 G 1082 (1445)
Q Consensus 1082 G 1082 (1445)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=332.20 Aligned_cols=218 Identities=21% Similarity=0.274 Sum_probs=181.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 578889988773 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ...++.++|++|++..++..|++|++.+......+ .....+..++.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 43 22345799999999888889999999875211100 0001123345678999999998776665 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 58899999999985 79999
Q ss_pred EcCCC
Q 000523 1081 VGPLG 1085 (1445)
Q Consensus 1081 ~G~~~ 1085 (1445)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 99863
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=329.77 Aligned_cols=205 Identities=22% Similarity=0.318 Sum_probs=170.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC----------------ccceEE
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----------------PQRTAA 229 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~~~~ 229 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 4999999999999999999999999999999999999998 999999998875321 145799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhHHh-cCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCC
Q 000523 230 YISQHDNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1445)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1445)
|++|++.+++.+||.||+.++... .+.. ..+....++++++.+|+
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------------------------------RAEAEKRAMELLDMVGL 136 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCC
Confidence 999998889999999999875321 1100 00011235677889999
Q ss_pred cccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 000523 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1445)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~ 388 (1445)
++..+.. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. ..+++++.++|+..++
T Consensus 137 ~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 137 ADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLAS-EHDLTMLLVTHEMGFA 210 (252)
T ss_pred hhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHH
Confidence 8766543 456999999999999999999999999999999999999999999998765 3355666678888899
Q ss_pred HhhcCeEEEecCCeEEEecChhHHH
Q 000523 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 389 ~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
.+++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999988763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=329.43 Aligned_cols=219 Identities=21% Similarity=0.259 Sum_probs=179.0
Q ss_pred CCCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC--C-CeEEEEE
Q 000523 842 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNI 918 (1445)
Q Consensus 842 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i 918 (1445)
..+..+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|
T Consensus 9 ~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 3445688999988763 2359999999999999999999999999999999999754 1 1358999
Q ss_pred EEcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 000523 919 TISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQS 989 (1445)
Q Consensus 919 ~i~g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~ 989 (1445)
.++|.+... ..+++.++|++|+..+++ .|++||+.+...... ..+.+..++.++++++.+++.+ ..+.
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 999987632 234567999999988777 899999987653321 1233344456889999999843 2233
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceE
Q 000523 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1069 (1445)
Q Consensus 990 ~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v 1069 (1445)
. ...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.+.+|++
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i 225 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYT 225 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEE
Confidence 2 46799999999999999999999999999999999999999999999985 4789999999986 577889999
Q ss_pred eEEecCcEEEEEcCC
Q 000523 1070 FLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1070 ~~l~~gG~~~y~G~~ 1084 (1445)
++|++ |+++..|+.
T Consensus 226 ~~l~~-G~i~~~g~~ 239 (260)
T PRK10744 226 AFMYL-GELIEFGNT 239 (260)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 799999875
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=345.62 Aligned_cols=201 Identities=24% Similarity=0.300 Sum_probs=174.3
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc---c----ccceEEEeccCCCCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDIHS 944 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~d~~~ 944 (1445)
..+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... . .++.+||++|+..++
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 468999999999999999999999999999999999876 4589999999876431 1 135699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000523 945 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1445)
Q Consensus 945 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDE 1024 (1445)
+.+||+||+.+....+. ...++.++.++++++.++|.+..+.. ++.||||||||++|||+|+.+|++|+|||
T Consensus 119 ~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999998765432 23344456688999999998877766 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1025 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1025 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999875 4899999999986 57888999999985 799999875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=296.37 Aligned_cols=204 Identities=26% Similarity=0.407 Sum_probs=175.9
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
..+|+|+|+.|.+||.++++||||||||||||+++|..+|+ .|+|.+||.+++. |...-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 34899999999999999999999999999999999999998 9999999998764 334568999999999999999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.|+.++.|.+.. .| ..++.+.+...||++..+..+ -.|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~~~i-----~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEHKYI-----WQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccccce-----Eee
Confidence 999999999886421 11 234567888999997766544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec--CCe
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~--~G~ 402 (1445)
||||||||.|||||..+|+.|+||||+.+||.-++.++.+.|-++.+..+ .-++.++|+..|+.-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 99999999999999999999999999999999999999999988887554 455558999999999999999998 489
Q ss_pred EEEecChhHHH
Q 000523 403 IVYQGPRELVL 413 (1445)
Q Consensus 403 iv~~G~~~~~~ 413 (1445)
|+..=+.+-..
T Consensus 213 vv~~~~~df~r 223 (259)
T COG4525 213 VVERLPLDFAR 223 (259)
T ss_pred eeEecCCCHHH
Confidence 99877766433
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.11 Aligned_cols=213 Identities=25% Similarity=0.372 Sum_probs=176.7
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 45677777653 2359999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 Q-----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~-----~~~~~~~gyv~Q~d~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
. ...++.++|++|++.. ....|+.|++.+....+ ....++.++.++++++.+++.+..+.. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1235679999998753 34568999998764332 123334445678899999998777665 45799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777899999999986 47788999999985 79999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 9875
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=315.34 Aligned_cols=190 Identities=59% Similarity=0.947 Sum_probs=162.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 467888888774210 12469999999999999999999999999999999999743234689999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
. ..+++.++|++|++.+++.+|++|++.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 345567999999998899999999998743110 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887789999999998744678899999998658999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=327.72 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=176.8
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC---CCeEEEEEEEc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITIS 921 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~---~~~~~G~i~i~ 921 (1445)
..+.++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999988763 2359999999999999999999999999999999999742 11358999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000523 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996 (1445)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1445)
|.++.. ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+........ .+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987642 134567999999988887 5999999887543311 12233345678889999985422111111 14
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999985 4799999999986 57788999999986 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 89988875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.10 Aligned_cols=202 Identities=25% Similarity=0.381 Sum_probs=165.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 35699999998888889
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHc-CCcccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (1445)
||+||+.++..... . + + ....++.+++.+ ++.+..++.
T Consensus 96 tv~~~l~~~~~~~~---~-~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~----- 134 (237)
T PRK11614 96 TVEENLAMGGFFAE---R-D---Q-----------------------------FQERIKWVYELFPRLHERRIQR----- 134 (237)
T ss_pred cHHHHHHHhhhccC---h-h---H-----------------------------HHHHHHHHHHHHHHHHHHHhCc-----
Confidence 99999987542110 0 0 0 001123345555 354444433
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ .+|+.++|+..++.+.+|++++|++
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QG-MTIFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCcHHHHHhhCCEEEEEeC
Confidence 446999999999999999999999999999999999999999999998754 34 4555578888899999999999999
Q ss_pred CeEEEecChhHHH
Q 000523 401 GQIVYQGPRELVL 413 (1445)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1445)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (237)
T PRK11614 213 GHVVLEDTGDALL 225 (237)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999988774
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=322.03 Aligned_cols=193 Identities=30% Similarity=0.425 Sum_probs=161.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1445)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 4999999999999999999999999999999999999998 999999999876542 2357999999988888
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.++....+... .+....++++++.+||++..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP--- 135 (214)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999998754321100 001123567888999986655544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.++||++++|+
T Consensus 136 --~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 136 --EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred --hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEec
Confidence 46999999999999999999999999999999999999999999998753 3 4456667888889999999999999
Q ss_pred CCe
Q 000523 400 DGQ 402 (1445)
Q Consensus 400 ~G~ 402 (1445)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=338.05 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=173.0
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCC-ceeEEEEcCccCCCcCc-------cceEEEEcCCC-
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK-VSGTVTYNGHDMDEFVP-------QRTAAYISQHD- 235 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~-~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1445)
.++|+|||++|++||+++|+|+||||||||+++|+|++++... .+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 4599999999999999999999999999999999999975211 28999999998865432 13699999987
Q ss_pred -CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
.+.+.+||.+++....+... +. ...+....++++|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~-~~--------------------------------~~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQ-GG--------------------------------NKKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhc-CC--------------------------------CHHHHHHHHHHHHHHCCCCChHH-
Confidence 47889999999876543210 00 00112234677899999974221
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
+-++.+..|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++... .+.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 112455679999999999999999999999999999999999999999999998653 355677789999999999999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999988753
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=326.58 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=168.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 3899999999999999999999999999999999999863 12389999999987542 1246799999998888
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc----ccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1445)
+ +||+||+.+..+..+.... .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 7 9999999886543210000 00112356778899997 44443
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+++|+
T Consensus 141 -----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 -----SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 3456999999999999999999999999999999999999999999998753 3 4566678888899999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000523 395 IILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1445)
+++|++|+++++|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=329.90 Aligned_cols=223 Identities=23% Similarity=0.294 Sum_probs=178.6
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+......+ ..+++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56788887764210000 0013579999999999999999999999999999999999876 46899999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000523 927 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 997 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1445)
.. ..++.++|++|++ .+.+.+||+|++.+...... .......++.++++++.+++. +..+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 31 1345799999996 46678999999977543211 122333445688999999995 555554 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 57778999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=331.57 Aligned_cols=217 Identities=27% Similarity=0.373 Sum_probs=179.6
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478888887663 2469999999999999999999999999999999999865 4589999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ..+++.++|++|+..+++.+|+.|++.+....... ........++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456799999998888889999999875321110 00111223456789999999987666653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 57788999999985 78999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 9885
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=325.38 Aligned_cols=233 Identities=25% Similarity=0.324 Sum_probs=181.2
Q ss_pred EEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHH
Q 000523 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L 198 (1445)
|+.+|++.++....+ -+++.|...+.+ ..+...+++|+|+|+++++|++++|+|||||||||||++|
T Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i 67 (236)
T cd03267 1 IEVSNLSKSYRVYSK---EPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL 67 (236)
T ss_pred CceecchhhccCcCC---ccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 356788888865322 233334333322 1233446799999999999999999999999999999999
Q ss_pred hCCCCCCCCceeEEEEcCccCCCc--CccceEEEEc-CCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCC
Q 000523 199 AGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1445)
Q Consensus 199 ~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1445)
+|.++|+ +|+|.++|+++... ..++.++|++ |++.+++.+||+||+.+.....+...
T Consensus 68 ~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~----------------- 127 (236)
T cd03267 68 SGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP----------------- 127 (236)
T ss_pred hCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH-----------------
Confidence 9999998 99999999875432 1245799997 55667789999999988654322100
Q ss_pred CCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCC
Q 000523 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1445)
Q Consensus 276 ~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD 355 (1445)
++....++++++.+||++..|+.++ .||||||||++||++|+.+|++++|||||+|||
T Consensus 128 -----------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 128 -----------------ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred -----------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 0011235667888999888877654 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEec
Q 000523 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1445)
Q Consensus 356 ~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1445)
+.++..+.+.|+++.+ .++.+|+.++|+..++.+++|++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNR-ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998765 33445666788888899999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=332.23 Aligned_cols=205 Identities=25% Similarity=0.362 Sum_probs=170.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC-CCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1445)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 3899999999999999999999999999999999999998 9999999998754322 356899999863 35568
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.++....+.. ..+....++++++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLD----------------------------------EETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 9999998765322110 0011224567889999987766654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. ..+++|+.++|+.+++.+.||++++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE-TYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998765 33456666788888999999999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=328.73 Aligned_cols=205 Identities=33% Similarity=0.507 Sum_probs=170.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 4999999999999999999999999999999999999998 9999999988754332 356999999988878899
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.++....+. .. ++....++++++.+||++..++.+ .
T Consensus 93 v~e~l~~~~~~~~~--~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 133 (258)
T PRK13548 93 VEEVVAMGRAPHGL--SR--------------------------------AEDDALVAAALAQVDLAHLAGRDY-----P 133 (258)
T ss_pred HHHHHHhhhcccCC--Cc--------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----c
Confidence 99999885421110 00 001123567788999987666554 4
Q ss_pred cCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 323 GISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~------~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
.|||||||||+||++|+ .+|++++|||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++.+++|+|+
T Consensus 134 ~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 212 (258)
T PRK13548 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRIV 212 (258)
T ss_pred cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEEE
Confidence 69999999999999999 5999999999999999999999999999876333 4456667888889999999999
Q ss_pred EecCCeEEEecChhHHH
Q 000523 397 LLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1445)
+|++|++++.|+.+++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 213 LLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999987764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=330.28 Aligned_cols=220 Identities=26% Similarity=0.343 Sum_probs=180.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC-eEEEEEEEcCcc
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 924 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1445)
-+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 367888887663 246999999999999999999999999999999999987542 236999999987
Q ss_pred CCc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000523 925 KKQ--------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLV 991 (1445)
Q Consensus 925 ~~~--------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 991 (1445)
... ...++.++|++|++.+++.+||.|++.+......+ .....++.++.++++++.+++.+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~- 149 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR- 149 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-
Confidence 532 12345689999999989999999999875321000 0111233345688999999998777765
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEe
Q 000523 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELF 1070 (1445)
Q Consensus 992 g~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~ 1070 (1445)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ .|.|||+++|++. .+.+.+|+++
T Consensus 150 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 150 ----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred ----ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 357999999999999999999999999999999999999999999999975 4899999999986 4788899999
Q ss_pred EEecCcEEEEEcCCC
Q 000523 1071 LMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1071 ~l~~gG~~~y~G~~~ 1085 (1445)
+|++ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7899998863
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=332.33 Aligned_cols=203 Identities=27% Similarity=0.396 Sum_probs=168.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCC-CCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDN-HIGE 240 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~~ 240 (1445)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 3899999999999999999999999999999999999998 9999999998764322 357999999864 4677
Q ss_pred CCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccc
Q 000523 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1445)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1445)
.||+||+.|+.+..+.. ..+....++++++.+||++..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP----------------------------------PIEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 89999998865332110 0011224567788999987766554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998753 3 45555577887777 56999999999
Q ss_pred CeEEEecChhHHH
Q 000523 401 GQIVYQGPRELVL 413 (1445)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1445)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=334.60 Aligned_cols=255 Identities=24% Similarity=0.326 Sum_probs=199.7
Q ss_pred hhHHHHHHhhhccccchHHHHHHHHHHHhhcCCC-CCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhc
Q 000523 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (1445)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (1445)
+...-+|+.++..+...+ +.++.+...+. .....|.|+|+++.+++
T Consensus 228 q~ltdme~mfdLl~~~~~-----v~d~pda~~L~~~~~g~v~F~~V~F~y~~---------------------------- 274 (497)
T COG5265 228 QALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDP---------------------------- 274 (497)
T ss_pred HhhhhHHHHHHhhccchh-----hccCCCCccccccccceEEEEEEEeeccc----------------------------
Confidence 334445555555555544 44555544443 34567999999999854
Q ss_pred CCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC
Q 000523 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (1445)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d 235 (1445)
.+++|+++|+++++|++++++||+|+||||++++|-++++++ +|.|+++|+++.+... ++.+|.|||+.
T Consensus 275 -----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 275 -----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred -----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccc
Confidence 234999999999999999999999999999999999999999 9999999999876543 57899999965
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
. +++.|+..|+.++. +....+....+++..+.. . -+..|++++||.
T Consensus 347 v-LFNDti~yni~ygr----~~at~eev~aaa~~aqi~---------------------------~--fi~~lP~gy~t~ 392 (497)
T COG5265 347 V-LFNDTIAYNIKYGR----PDATAEEVGAAAEAAQIH---------------------------D--FIQSLPEGYDTG 392 (497)
T ss_pred e-ehhhhHHHHHhccC----ccccHHHHHHHHHHhhhh---------------------------H--HHHhCchhhhcc
Confidence 5 45569999999874 222233322222221111 1 134589999999
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
||+++.+ |||||||||+|||+++.+|+||++||.||+||+.|++.|...|++.+ .++|+++.. |+..+.--+|.|
T Consensus 393 Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlvia--hrlsti~~adei 467 (497)
T COG5265 393 VGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIA--HRLSTIIDADEI 467 (497)
T ss_pred cchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEe--ehhhhccCCceE
Confidence 9999997 99999999999999999999999999999999999999999999876 345555533 456677789999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000523 396 ILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1445)
++|++|+|++.|++++++.
T Consensus 468 ivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 468 IVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EEeeCCEEEecCcHHHHHH
Confidence 9999999999999999986
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=332.90 Aligned_cols=217 Identities=24% Similarity=0.327 Sum_probs=176.3
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 66788887764210 001359999999999999999999999999999999999875 45899999998754
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000523 927 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 996 (1445)
Q Consensus 927 ~-------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1445)
. ..+++.++|++|++ .+++ .||+||+.+..... ....++.++.++++++.++|.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 22456799999986 3444 69999998764332 1233344556788999999963 44544 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777899999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 99988875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=321.67 Aligned_cols=215 Identities=26% Similarity=0.337 Sum_probs=180.0
Q ss_pred cceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-C-CCCceeEEEEcCccCCCcCc-------cceEEEEcCC
Q 000523 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-P-TLKVSGTVTYNGHDMDEFVP-------QRTAAYISQH 234 (1445)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 234 (1445)
...+++||||++++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4569999999999999999999999999999999999998 4 33467999999998755543 2579999998
Q ss_pred C--CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccc
Q 000523 235 D--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1445)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1445)
+ .+.|.+||.+.+.-..+.+.... ..++...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 6 58899999988865543321000 0112344577889999998642
Q ss_pred cccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000523 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1445)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~ 392 (1445)
.+-+.++.+|||||||||.||.||+.+|++|+.||||++||...+.+|++.|+++.+ ..++.++.|+|+..-+.++|
T Consensus 145 --~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 --RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred --HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 234567788999999999999999999999999999999999999999999999876 56788888999999999999
Q ss_pred CeEEEecCCeEEEecChhHHH
Q 000523 393 DDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~ 413 (1445)
|||+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.89 Aligned_cols=198 Identities=23% Similarity=0.381 Sum_probs=167.1
Q ss_pred eecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000523 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 954 (1445)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 954 (1445)
|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||.|++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 45899999998764322 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000523 955 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034 (1445)
Q Consensus 955 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~ 1034 (1445)
+...... ......+.++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7632111 1223334455678899999998776665 357999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1035 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1035 ~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 57888999999986 788888764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=321.29 Aligned_cols=213 Identities=25% Similarity=0.349 Sum_probs=175.3
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.++... ....+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 478889887764210 11359999999999999999999999999999999999875 4589999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000523 926 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 998 (1445)
Q Consensus 926 ~~~~------~-~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1445)
.... . ++.++|++|++.+++.+|+.||+.+....+. ......++.++++++.+++.+..+.. +..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHL-----PAQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhh
Confidence 4311 1 2469999999988899999999988654331 22334456688999999998776665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999986 34 56999999985 67
Q ss_pred EEE
Q 000523 1078 EIY 1080 (1445)
Q Consensus 1078 ~~y 1080 (1445)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=324.27 Aligned_cols=210 Identities=25% Similarity=0.313 Sum_probs=173.0
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 4667776653 2469999999999999999999999999999999999876 458999999987543
Q ss_pred c----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCHH
Q 000523 928 E----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 928 ~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgG 1002 (1445)
. ..++.++|++|++.+++.+|+.|++.+....+. .. ..+..+++++.++ +.+..+.. ++.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHH
Confidence 1 124569999999999999999999988654321 11 1223567777776 45555554 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998764 899999999986 57778999999985 799999
Q ss_pred cCCC
Q 000523 1082 GPLG 1085 (1445)
Q Consensus 1082 G~~~ 1085 (1445)
|+..
T Consensus 214 ~~~~ 217 (230)
T TIGR03410 214 GAGD 217 (230)
T ss_pred CCHH
Confidence 9863
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=322.52 Aligned_cols=212 Identities=27% Similarity=0.395 Sum_probs=179.3
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
.++|+++.+. .+.+|+|+|++++|||+++|+|+||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677777653 2469999999999999999999999999999999999876 458999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000523 928 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006 (1445)
Q Consensus 928 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1445)
. ..++.++|++|++..++.+|+.||+.+....+. ......++.++++++.+++.+..+.. +..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 2 234678999999998888999999987654331 22333445678899999998877765 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1007 l~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999998764 899999999986 57888999999985 789988864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=329.28 Aligned_cols=216 Identities=28% Similarity=0.405 Sum_probs=177.8
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 45677776653 2469999999999999999999999999999999999875 45899999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 927 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
. ...++.++|++|++..++..||.||+.+....... ......+..+.++++++.+++.+..+.. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 3 23345689999998777889999999875311100 0011122344678899999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||||++||++|+.+|++++|||||+|||+.+...+++.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999777899999999997 57789999999985 7899998
Q ss_pred CC
Q 000523 1083 PL 1084 (1445)
Q Consensus 1083 ~~ 1084 (1445)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 86
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=330.00 Aligned_cols=204 Identities=24% Similarity=0.333 Sum_probs=167.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1445)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999998 999999999875432 2457999999874 67888
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
|+++|+.|.....+.. . .+....++.+++.+||.+..|+. +
T Consensus 100 ~v~~~~~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVP--Y--------------------------------DEMHRRVSEALKQVDMLERADYE-----P 140 (269)
T ss_pred cHHHHHHhhHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchhhhCC-----c
Confidence 9999998865332110 0 00112356778899998766654 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 324445556777777765 9999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=331.16 Aligned_cols=214 Identities=28% Similarity=0.356 Sum_probs=177.9
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 45778877663 12359999999999999999999999999999999999875 45899999998763
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~-----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
. ...++.++|++|++. .+...||.|++.+..... ....++..+.+.++++.++|.+..+.. ++.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCC
Confidence 1 124567999999963 334579999998764321 123344455688999999998877766 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 57788999999986 79999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 9985
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=328.79 Aligned_cols=220 Identities=23% Similarity=0.257 Sum_probs=177.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC---CeEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999997642 13689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++.. ..+++.++|++|++..++. ||.||+.+....+.. .....+.++.++++++.+++.+........ .+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHE-PGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhC-Ccc
Confidence 87642 2345679999999887774 999999987543321 112233345678899999996421111111 146
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|++ |+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 789999999986 47788999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9999874
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=325.41 Aligned_cols=211 Identities=23% Similarity=0.342 Sum_probs=171.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988755432 24699999999899999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.++..... ..+...... ...+....++++++.+|+++..++.+
T Consensus 93 tv~~nl~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (242)
T TIGR03411 93 TVFENLELALPRDK--SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLA----- 141 (242)
T ss_pred CHHHHHHHhhhccc--ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999988643110 000000000 00011234677889999987666554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.++||+|++|++|
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998743 3 45666788888999999999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
+++++|+.+++.
T Consensus 219 ~~~~~~~~~~~~ 230 (242)
T TIGR03411 219 SVLAEGSLDQVQ 230 (242)
T ss_pred eEEeeCCHHHHh
Confidence 999999987753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=327.14 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=164.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 38999999999999999999999999999999999998620 1289999999886421 1245799999987776
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc----ccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1445)
.+||+||+.|+....+.... .+....++..++.+|+. +..++
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 48999999986533211000 00112345567777763 33344
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+.+|+
T Consensus 147 -----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 -----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 33 5566678888899999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000523 395 IILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1445)
+++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=327.92 Aligned_cols=220 Identities=22% Similarity=0.296 Sum_probs=172.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.+
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 23589999999999999
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.++....... +...... + .+..+ ....+....++++++.+||++..+..+
T Consensus 96 tv~enl~~~~~~~~~~---~~~~~~~------~-~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 96 TVIENLLVAQHQQLKT---GLFSGLL------K-TPAFR---------RAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred cHHHHHHHhhhccccc---hhhhhhc------c-ccccc---------cchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 9999999864311000 0000000 0 00000 000011234667888999986666544
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ ..+++|+.++|+..++.+.+|++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 33456666788889999999999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
++++.|+.+++.
T Consensus 231 ~i~~~~~~~~~~ 242 (255)
T PRK11300 231 TPLANGTPEEIR 242 (255)
T ss_pred eEEecCCHHHHh
Confidence 999999988763
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=339.83 Aligned_cols=213 Identities=26% Similarity=0.425 Sum_probs=179.7
Q ss_pred CCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcC
Q 000523 843 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 922 (1445)
Q Consensus 843 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g 922 (1445)
.+..+..+|++|.++. .+++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 4556777799988752 2379999999999999999999999999999999999887 3689999999
Q ss_pred ccCC---cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc------ccccC
Q 000523 923 YPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ------SLVGL 993 (1445)
Q Consensus 923 ~~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~------~~vg~ 993 (1445)
.+.. ...++++++||+|++.+++ -|++||+.++. ++.++ +.+.++++..+|.+..+ +.+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 4568899999999998876 69999998752 22222 34678888888877654 34444
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
+.++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 3578999999999999999999999999999999999999999999999986 599999999985 466789999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 799998875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=327.52 Aligned_cols=224 Identities=23% Similarity=0.260 Sum_probs=181.3
Q ss_pred cCCCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC---CeEEEE
Q 000523 841 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGN 917 (1445)
Q Consensus 841 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~ 917 (1445)
|..+..+.++|+++.++ .+.+|+|+|+++++||+++|+|+|||||||||++|+|...+ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445689999988763 24699999999999999999999999999999999997642 146899
Q ss_pred EEEcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 000523 918 ITISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992 (1445)
Q Consensus 918 i~i~g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg 992 (1445)
|.++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.++++++.++|.+..+...+
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987632 123567999999988877 69999998864322 112233445567889999998643222222
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEE
Q 000523 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1445)
Q Consensus 993 ~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l 1072 (1445)
. .+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|+++ ++.+.+|++++|
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 2 256899999999999999999999999999999999999999999999985 4799999999987 578899999999
Q ss_pred ecCcEEEEEcCC
Q 000523 1073 KRGGQEIYVGPL 1084 (1445)
Q Consensus 1073 ~~gG~~~y~G~~ 1084 (1445)
++ |+++..|+.
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14237 236 YL-GDLIEYDKT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 799999986
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=330.86 Aligned_cols=204 Identities=23% Similarity=0.349 Sum_probs=166.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCC-C
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDN-H 237 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~-~ 237 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 4999999999999999999999999999999999999998 999999999875421 1356999999862 3
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcc-cccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (1445)
+...||+||+.|.....+... .+....++++++.+||.. ..+.
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-- 141 (280)
T PRK13649 98 LFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEK-- 141 (280)
T ss_pred hccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhC--
Confidence 445799999988643221100 001123566788899963 3444
Q ss_pred cccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000523 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ii 396 (1445)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+++|+++
T Consensus 142 ---~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 142 ---NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred ---CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEEE
Confidence 3456999999999999999999999999999999999999999999998753 3 4556667788888999999999
Q ss_pred EecCCeEEEecChhHHH
Q 000523 397 LLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1445)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 217 VLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=325.19 Aligned_cols=200 Identities=25% Similarity=0.398 Sum_probs=166.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4899999999999999999999999999999999999998 9999999988754322 457999999877765 69
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-cccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1445)
|+||+.++....+ . ....++++++.+||+ +..+. .+
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----DV 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 9999987532110 0 001245678888996 33443 34
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
..||||||||++||++++.+|++++|||||+|||..++..+.+.|+++.... +++|+.++|+..++.+.+|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM-NLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 5699999999999999999999999999999999999999999999875422 445666788888999999999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
++++.|+.+++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=365.88 Aligned_cols=256 Identities=23% Similarity=0.333 Sum_probs=194.3
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.....+|+.+.++.+++. . +....+.+...++++|+++.++.
T Consensus 284 ~~~~~~~~~ri~~~l~~~~~~-----~---~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 328 (544)
T TIGR01842 284 FSGARQAYKRLNELLANYPSR-----D---PAMPLPEPEGHLSVENVTIVPPG--------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHHhCCccc-----c---CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 478888899998888765541 0 01112223457999999998742
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
.+.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 329 -----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 400 (544)
T TIGR01842 329 -----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQD 400 (544)
T ss_pred -----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCC
Confidence 1124899999999999999999999999999999999999998 9999999999876543 4689999998
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.+++ .|++||+.++.. ....+.+.++++.. ..++.++ .|++..||
T Consensus 401 ~~lf~-~ti~~Ni~~~~~----~~~~~~~~~~~~~~---------------------------~~~~~i~--~l~~gl~t 446 (544)
T TIGR01842 401 VELFP-GTVAENIARFGE----NADPEKIIEAAKLA---------------------------GVHELIL--RLPDGYDT 446 (544)
T ss_pred ccccc-ccHHHHHhccCC----CCCHHHHHHHHHHh---------------------------ChHHHHH--hCcccccc
Confidence 76665 599999985421 11111111111110 1122333 35666789
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+ ..||||||||++||||++++|++++|||||+|||+.++..+.+.|+++.. .++|+++ ++|..+ ..+.||+
T Consensus 447 ~~~~~g-~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~-ith~~~-~~~~~d~ 522 (544)
T TIGR01842 447 VIGPGG-ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVV-ITHRPS-LLGCVDK 522 (544)
T ss_pred ccCCCc-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEE-EeCCHH-HHHhCCE
Confidence 998754 56999999999999999999999999999999999999999999987642 3455555 455544 5678999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|++++.|+++++.+
T Consensus 523 i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEECCEEEeeCCHHHHhh
Confidence 99999999999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=323.96 Aligned_cols=220 Identities=21% Similarity=0.278 Sum_probs=177.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC--CC-eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 477888887763 2369999999999999999999999999999999999864 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++.. ..+++.++|++|+..+++..|++||+.+...... .....+.++.++++++.+++.+........ .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87632 2346679999999999999999999987643321 112233345678899999986421111111 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999986 57788999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9999985
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=327.79 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=169.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc----------------CccceEE
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------------VPQRTAA 229 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~~~~ 229 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 4999999999999999999999999999999999999998 99999999876421 1135799
Q ss_pred EEcCCCCCCCCCCHHHHHHHhHH-hcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCC
Q 000523 230 YISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1445)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1445)
|++|++.+++.+||+||+.++.. ..+.. ..+....+.++++.+||
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVGI 141 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcCC
Confidence 99999988889999999987532 11100 00112235678889999
Q ss_pred cccc-cccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 000523 309 DVCA-DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1445)
Q Consensus 309 ~~~~-dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1445)
++.. + +..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..+
T Consensus 142 ~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~~ 214 (257)
T PRK10619 142 DERAQG-----KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGF 214 (257)
T ss_pred Chhhhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHH
Confidence 7643 3 33457999999999999999999999999999999999999999999998754 3 4555667888888
Q ss_pred HHhhcCeEEEecCCeEEEecChhHHH
Q 000523 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
+..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 215 ARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999988764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=321.12 Aligned_cols=195 Identities=24% Similarity=0.335 Sum_probs=163.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1445)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 4999999999999999999999999999999999999998 999999999876432 1357999999988889
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.+.....+... ++....++.+++.+||++..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP--- 135 (222)
T ss_pred cccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc---
Confidence 9999999988654322100 001123456788899986655443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +++++.++|+..++...+|+|++|+
T Consensus 136 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 136 --IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 4566668888899999999999999
Q ss_pred CCeEE
Q 000523 400 DGQIV 404 (1445)
Q Consensus 400 ~G~iv 404 (1445)
+|+++
T Consensus 212 ~G~i~ 216 (222)
T PRK10908 212 DGHLH 216 (222)
T ss_pred CCEEc
Confidence 99985
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=328.76 Aligned_cols=206 Identities=26% Similarity=0.343 Sum_probs=169.9
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCC--C
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1445)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999998 9999999998765322 35699999986 4
Q ss_pred CCCCCCHHHHHHHhHHhc-CCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-ccccc
Q 000523 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1445)
+.+.+||+||+.+..... +.. ..+....++++++.+||+ ...+.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 667899999998754211 000 001122456788899995 45554
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+...+.+++|+
T Consensus 147 ~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 L-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ-AFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHHhcE
Confidence 3 456999999999999999999999999999999999999999999998764 3345566678888899999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000523 395 IILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1445)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998774
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=340.38 Aligned_cols=203 Identities=22% Similarity=0.318 Sum_probs=175.5
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc----CCc---cc---c-cceEEEec
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQ---ET---F-ARISGYCE 938 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~----~~~---~~---~-~~~~gyv~ 938 (1445)
+...+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.+ +.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34679999999999999999999999999999999999876 458999999952 211 11 1 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCC
Q 000523 939 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1018 (1445)
Q Consensus 939 Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~ 1018 (1445)
|+..++|.+||+||+.|+...+ ....+++++.++++++.++|.+..+..+ ..||||||||++|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 2344556667899999999988777763 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1019 illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999764 899999999987 57899999999985 799999986
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=318.51 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=167.4
Q ss_pred EeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc-ccccceEEEeccCCCCCCCCCHHHH
Q 000523 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 952 (1445)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 952 (1445)
.++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3579999999999999999999999999999999876 458999999987643 2345679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000523 953 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032 (1445)
Q Consensus 953 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~ 1032 (1445)
+.+...... ... ...++.++++++.+++.+..+.. ++.||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 111 22344578899999998777765 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcC
Q 000523 1033 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1033 ~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~ 1083 (1445)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999986 56788999999985 79988875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=324.60 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=175.6
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC-CeEEEEEEEcCccC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 925 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 925 (1445)
+.++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 45677777663 24699999999999999999999999999999999997532 24689999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
.. ..+++.++|++|++.+++ .|++||+.+....+.... .....++.++++++.++|.+........ ..+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 43 234567999999988887 699999988654432111 1223344578899999995322111111 24679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 57788999999985 7999998
Q ss_pred CC
Q 000523 1083 PL 1084 (1445)
Q Consensus 1083 ~~ 1084 (1445)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 75
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=326.30 Aligned_cols=209 Identities=20% Similarity=0.300 Sum_probs=165.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCcC-----ccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++.... .++.++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 48999999999999999999999999999999999987510 02899999998874321 235799999988777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ +||+||+.|+.+..+... + +....++++++.+|+........ +
T Consensus 106 ~-~tv~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 149 (258)
T PRK14268 106 P-MSIYDNVAYGPRIHGANK--K--------------------------------DLDGVVENALRSAALWDETSDRL-K 149 (258)
T ss_pred c-ccHHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCCcchhhhh-c
Confidence 7 899999998654322100 0 01123566778888742111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
..++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+.+|+|++|
T Consensus 150 ~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~-~tiiivsH~~~~~~~~~d~i~~l 226 (258)
T PRK14268 150 SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK--KD-YTIVIVTHNMQQAARISDYTGFF 226 (258)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--hC-CEEEEEECCHHHHHHhCCEEEEE
Confidence 3445699999999999999999999999999999999999999999999874 23 55666788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+++++.
T Consensus 227 ~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 227 LMGELIEFGQTRQIF 241 (258)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=322.44 Aligned_cols=212 Identities=26% Similarity=0.386 Sum_probs=178.9
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4667766653 2469999999999999999999999999999999999875 458999999987653
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000523 928 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006 (1445)
Q Consensus 928 ~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1445)
. ..++.++|++|++.+++..|+.||+.+....+. .......+.++++++.+++.+..+.. .+.||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHH
Confidence 2 234679999999988889999999987654331 22233345678899999998777765 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1007 l~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 899999999986 57888999999985 789999885
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=320.82 Aligned_cols=197 Identities=27% Similarity=0.335 Sum_probs=161.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 4999999999999999999999999999999999999998 9999999998765432 24699999998888
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.+||.||+.+.....+.. . .+....++++++.+||++..+..+
T Consensus 101 ~~~tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 144 (228)
T PRK10584 101 PTLNALENVELPALLRGES-S---------------------------------RQSRNGAKALLEQLGLGKRLDHLP-- 144 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCCHhHhhCCh--
Confidence 9999999998864322110 0 001224567889999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++...+ ++|+.++|+..++ +.+|++++|
T Consensus 145 ---~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG-TTLILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998764334 4555567777776 459999999
Q ss_pred cCCeEEEe
Q 000523 399 SDGQIVYQ 406 (1445)
Q Consensus 399 ~~G~iv~~ 406 (1445)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=320.87 Aligned_cols=205 Identities=28% Similarity=0.366 Sum_probs=171.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.+... ++.++|++|++..++.+|++
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998765432 46799999998888889999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.+.....+.. . ......++++++.+||++..++.+ ..|
T Consensus 91 ~nl~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (232)
T cd03300 91 ENIAFGLRLKKLP--K--------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQL 131 (232)
T ss_pred HHHHHHHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hhC
Confidence 9998865432210 0 001123567888999987666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
|||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.... +.+|+.++|+..++.+.+|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~-~~tiii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876422 445555777888899999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (232)
T cd03300 211 QIGTPEEIY 219 (232)
T ss_pred ecCCHHHHH
Confidence 999887664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=328.82 Aligned_cols=204 Identities=28% Similarity=0.378 Sum_probs=167.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCC--cC---ccceEEEEcCCCC-CCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--FV---PQRTAAYISQHDN-HIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~~---~~~~~~yv~Q~d~-~~~ 239 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.++|++|++. .++
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 3899999999999999999999999999999999999998 9999999998742 11 1357999999864 345
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
..|+.||+.+..+..+... .+....++++++.+||++..++.+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI--- 134 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc---
Confidence 6789999988643221100 001123566788899987666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+++|++++|+
T Consensus 135 --~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 135 --QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 4456667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=357.01 Aligned_cols=209 Identities=28% Similarity=0.368 Sum_probs=177.9
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++++|++|+++. .++.+|+|+|++|+|||++||+|+||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46999999999852 12469999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1445)
+.+ ..+++.+|||+|++.+++ -|++||+.++. + .+. +.++++++..++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCH----HHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 457788999999998876 59999998742 1 222 3467888888877543 5566654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3689999999999999999999999999999999999999999999886 589999999985 4677999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=324.97 Aligned_cols=212 Identities=24% Similarity=0.289 Sum_probs=168.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (1445)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 4899999999999999999999999999999999998741 012899999999875432 23579999999888899
Q ss_pred CCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccc
Q 000523 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1445)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1445)
+||+||+.++.+..+.... ..+....++++++.+||.+..+.. -+..
T Consensus 97 ~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-~~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDR-LDAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhh-hcCC
Confidence 9999999986533211000 001122356678888886421111 1234
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++++.++|+..++.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KD-MTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 55799999999999999999999999999999999999999999999874 33 5566678888888999999999999
Q ss_pred CeEEEecChhHHH
Q 000523 401 GQIVYQGPRELVL 413 (1445)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1445)
|++++.|+.+++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999988764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=330.67 Aligned_cols=208 Identities=25% Similarity=0.343 Sum_probs=168.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC-CCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1445)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 48999999999999999999999999999999999999871123999999998764322 357999999864 67789
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||+||+.|..+..+.. .++...+++.+++.+||++..++. +
T Consensus 101 tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~-----~ 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSE-----P 141 (282)
T ss_pred CHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCC-----c
Confidence 9999998864322110 001123456788999998766644 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
+.||||||||++||+||+.+|++|+|||||+|||..++..+.+.|+++.... +++|+.++|+..++ ..||++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN-NLTVISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999876432 44555567777777 579999999999
Q ss_pred eEEEecChhHHHH
Q 000523 402 QIVYQGPRELVLE 414 (1445)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1445)
++++.|+++++.+
T Consensus 220 ~i~~~g~~~~~~~ 232 (282)
T PRK13640 220 KLLAQGSPVEIFS 232 (282)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=333.97 Aligned_cols=223 Identities=18% Similarity=0.224 Sum_probs=179.8
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC-C-eEEEEEEEcCcc
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGYP 924 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~~ 924 (1445)
++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888776421 1124699999999999999999999999999999999997642 2 368999999987
Q ss_pred CCcc---cc----cceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000523 925 KKQE---TF----ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 995 (1445)
Q Consensus 925 ~~~~---~~----~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1445)
+... .. ++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.++|.+..+.+- ..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~--~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLD--VY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh--CC
Confidence 6431 11 23699999997 47888999988866543321 1234555667899999999975322111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 996 ~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
+..|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+++ .+.+.+|++++|++
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999976 4899999999986 47788999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 230 -G~ive~g~~ 238 (326)
T PRK11022 230 -GQVVETGKA 238 (326)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=324.68 Aligned_cols=203 Identities=27% Similarity=0.351 Sum_probs=167.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCC------c---CccceEEEEcCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------F---VPQRTAAYISQHDN 236 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~d~ 236 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4999999999999999999999999999999999999998 9999999987631 1 11357999999998
Q ss_pred CCCCCCHHHHHHHhH-HhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 237 HIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
+++.+||+||+.+.. ...+... .+....++++++.+||+...+..
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 999999999997532 1111000 00112456788899998766654
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
+ +.|||||||||+|||+|+.+|++++|||||+|||..++..+.+.|+++.. . +++++.++|+..++.+.+|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999998753 3 455666788888988999999
Q ss_pred EEecCCeEEEecChhHH
Q 000523 396 ILLSDGQIVYQGPRELV 412 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1445)
++|++|+++++|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=335.43 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=168.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|.++... ..++.++||+|++.++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998631 01289999999998632 2356799999988766
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.||+||+.|+....+... .+ ..+..++.+++..+|.+..++.+++
T Consensus 176 -~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 176 -EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred -CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhhC
Confidence 5899999998653321100 00 0111244566777776555556654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
....|||||||||+|||||+.+|+||+|||||+|||+.+...+.++|+++.+ + .+++.++|....+.+.+|+|++|
T Consensus 222 -~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 222 -AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred -CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 4557999999999999999999999999999999999999999999998642 3 56666888888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999874
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=329.17 Aligned_cols=215 Identities=24% Similarity=0.309 Sum_probs=179.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.+.. +++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 4788898877631 12468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ..+++.+||++|++. .++.+||+||+.+..... ....++.++.++++++.++|.+..++. ++.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCH
Confidence 43 234667999999974 566789999998864322 123344455688999999998877766 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ ++|||+++|+++. + ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 5899999999863 4 47999999985 78998
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=327.65 Aligned_cols=204 Identities=28% Similarity=0.395 Sum_probs=168.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc--C---ccceEEEEcCCCC-CCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHDN-HIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (1445)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... . .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 4899999999999999999999999999999999999998 99999999987421 1 2357999999853 345
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+||+||+.++....+.. . .+....+.++++.+||.+..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS-K---------------------------------EEVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCchhhcCChh--
Confidence 679999998764221100 0 0111235678899999877776544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+.||++++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999998754 3 4556668888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=325.16 Aligned_cols=207 Identities=22% Similarity=0.313 Sum_probs=164.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCceeEEEEcCccCCCc--C---ccceEEEEcCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHD 235 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d 235 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+ +|+|.++|+++... . .++.++|++|++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 48999999999999999999999999999999999864 35 89999999887532 1 145799999988
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
.+++ .||+||+.++....+.... ++....++.+++.+||.+...+.
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 7777 5999999987543221000 00112345567778875422122
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
. ++.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+++|+|
T Consensus 143 ~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 143 L-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHhCCEE
Confidence 2 23456799999999999999999999999999999999999999999999873 33 45666788888999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 219 AFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999987763
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=334.06 Aligned_cols=225 Identities=24% Similarity=0.250 Sum_probs=183.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|+++.+...... . ...+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~-~--~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL-F--KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc-c--ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 47888998777432100 0 00123469999999999999999999999999999999999875 3589999999876
Q ss_pred Cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000523 926 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 996 (1445)
Q Consensus 926 ~~------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1445)
.. ..+++.++|++|++ .+.|.+||.+++........ .....+.++.+.++++.+||.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 43 12456799999997 57889999999877544321 2334455667899999999963 44544 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
..||||||||++||+||+.+|++|++||||++||..++..+++.|+++.++ |.|||++||+++ .+.+.+|++++|++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999999764 899999999986 46678999999985
Q ss_pred cEEEEEcCC
Q 000523 1076 GQEIYVGPL 1084 (1445)
Q Consensus 1076 G~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 899999985
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=322.32 Aligned_cols=200 Identities=29% Similarity=0.403 Sum_probs=168.6
Q ss_pred ceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc--ccccceEEEec-cCCCCCCCC
Q 000523 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPFV 947 (1445)
Q Consensus 871 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~d~~~~~l 947 (1445)
.+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++ |++.+++.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 4579999999999999999999999999999999999875 458999999976432 23456799997 556677889
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000523 948 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1445)
Q Consensus 948 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTs 1027 (1445)
|++|++.+...++. ...++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 111 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 111 PVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999988654432 223334456788999999988777663 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1028 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 99999999999999998764 899999999986 57788999999985 7887765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=376.25 Aligned_cols=257 Identities=24% Similarity=0.393 Sum_probs=196.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.+..++|+.++++.++|. .. .+....+.....++++||++.++.
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~-----~~-~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 467 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEP-----RS-AGLAALPELRGAITFENIRFRYAP--------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCc-----cC-CCCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 568888899999888776551 00 011111222457999999999742
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
....+|+|+|++++||+.++|+|+||||||||+|+|+|.++|+ +|+|++||+++++... ++.++||+|+
T Consensus 468 -----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 468 -----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred -----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 1124899999999999999999999999999999999999998 9999999999887654 4689999997
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.++ +.|++||+.++.. ....+.+.++++.. + .++.+ -.|+++.||
T Consensus 540 ~~lf-~~ti~eNi~~~~~----~~~~~~i~~a~~~~---~------------------------l~~~i--~~lp~gl~t 585 (694)
T TIGR01846 540 NVLF-SRSIRDNIALCNP----GAPFEHVIHAAKLA---G------------------------AHDFI--SELPQGYNT 585 (694)
T ss_pred Ceeh-hhhHHHHHhcCCC----CCCHHHHHHHHHHc---C------------------------hHHHH--HhCcCccCc
Confidence 6555 5799999987521 11112222221111 0 11122 236778899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+ .+||||||||++|||||+++|++++|||||++||+.++..+.+.|++.. .+.|+|+ ++|..+ ....||+
T Consensus 586 ~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~~~-~~~~~d~ 660 (694)
T TIGR01846 586 EVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVII-IAHRLS-TVRACDR 660 (694)
T ss_pred EecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCChH-HHHhCCE
Confidence 999765 5799999999999999999999999999999999999999999998863 3455555 555544 4567999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+++++|+++++.+
T Consensus 661 ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=324.51 Aligned_cols=212 Identities=26% Similarity=0.330 Sum_probs=168.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|++|++.+++
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 4899999999999999999999999999999999995 677 9999999998765432 234899999999999
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcc-cccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGD 318 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 318 (1445)
.+|++|++.+......... +.... ...+....++.+++.+||+. ..+..++
T Consensus 91 ~~t~~~~~~~~~~~~~~~~------------------~~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 142 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSAR------------------GEEPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN- 142 (243)
T ss_pred CcCHHHHHHHHHHHhhccc------------------ccccc---------cHHHHHHHHHHHHHHcCCchhhcccccc-
Confidence 9999999987643211000 00000 00111234677899999973 4454332
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh-cCeEEE
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~-~D~iil 397 (1445)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++... +|++++
T Consensus 143 ---~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~vsH~~~~~~~~~~d~i~~ 217 (243)
T TIGR01978 143 ---EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-P-DRSFLIITHYQRLLNYIKPDYVHV 217 (243)
T ss_pred ---cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CcEEEEEEecHHHHHhhcCCeEEE
Confidence 14999999999999999999999999999999999999999999998753 3 44566678888888888 899999
Q ss_pred ecCCeEEEecChhHHH
Q 000523 398 LSDGQIVYQGPRELVL 413 (1445)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1445)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 218 LLDGRIVKSGDVELAK 233 (243)
T ss_pred EeCCEEEEecCHHHhc
Confidence 9999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=338.24 Aligned_cols=212 Identities=27% Similarity=0.440 Sum_probs=177.7
Q ss_pred CCceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcC
Q 000523 843 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 922 (1445)
Q Consensus 843 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g 922 (1445)
.+..++|+||++++. +++++|++|||+|++||.+||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 455799999999885 23469999999999999999999999999999999998764 479999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 000523 923 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVG 992 (1445)
Q Consensus 923 ~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg 992 (1445)
.++++ +.+|+.+||||||..++. -||.+|+.|+. ++.+.++ |-++.+..++.+. .++.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhHh
Confidence 98754 567889999999887765 69999999862 3344333 4455555555543 455677
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEE
Q 000523 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1445)
Q Consensus 993 ~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l 1072 (1445)
..| .-|||||||||+|||+++++|+|+++|||||.||..+...+++.+++. ..|+|+|++.|+. +....||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEE
Confidence 664 469999999999999999999999999999999999999999999994 3589999999986 468889999999
Q ss_pred ecCcEEEEEcCC
Q 000523 1073 KRGGQEIYVGPL 1084 (1445)
Q Consensus 1073 ~~gG~~~y~G~~ 1084 (1445)
++ |++...|+-
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 96 789988885
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=358.90 Aligned_cols=220 Identities=20% Similarity=0.306 Sum_probs=184.4
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++++. ++.+|+|||++|++||+++|+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 6 l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 6 LEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred EEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 77888887763 24699999999999999999999999999999999998764336899999998764
Q ss_pred ccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 927 QET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 927 ~~~----~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
... .++.+||++|++.+++.+||+|++.+....+.....+.+..++.++++++.+++.+..+..+ ..||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHH
Confidence 321 24569999999988899999999988654321111223334456889999999987777653 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++. .+.+.+|++++|++ |++++.|
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~ 225 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeec
Confidence 999999999999999999999999999999999999999999877999999999986 57788999999985 7999999
Q ss_pred CCCC
Q 000523 1083 PLGR 1086 (1445)
Q Consensus 1083 ~~~~ 1086 (1445)
+..+
T Consensus 226 ~~~~ 229 (506)
T PRK13549 226 PAAG 229 (506)
T ss_pred cccc
Confidence 8754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=334.46 Aligned_cols=224 Identities=19% Similarity=0.288 Sum_probs=182.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC-eEEEEEEEcCcc
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 924 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 924 (1445)
-++++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47889988776421 12356999999999999999999999999999999999987531 238999999987
Q ss_pred CCc---cc---cc-ceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000523 925 KKQ---ET---FA-RISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 995 (1445)
Q Consensus 925 ~~~---~~---~~-~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 995 (1445)
+.. .. ++ +.++|++|++ .+.|.+|+.+++........ ....++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 643 11 22 4799999997 67889999999877654332 234445556788999999997533221 1 22
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEec
Q 000523 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 996 ~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
+..||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+.+|++++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999999765 899999999986 46778999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=328.40 Aligned_cols=219 Identities=26% Similarity=0.355 Sum_probs=177.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC------eEEEEEEE
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 920 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~------~~~G~i~i 920 (1445)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 46777776653 246999999999999999999999999999999999986532 12799999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000523 921 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996 (1445)
Q Consensus 921 ~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1445)
+|.+... ..+++.++|++|++..++.+||+|++.+....... ........++.++++++.+++.+..+.. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987642 23455689999998766679999999875321110 0111123345678899999998766654 4
Q ss_pred CcCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhh
Q 000523 997 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1066 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~f 1066 (1445)
..||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998765 899999999986 577889
Q ss_pred ceEeEEecCcEEEEEcCCC
Q 000523 1067 DELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1067 D~v~~l~~gG~~~y~G~~~ 1085 (1445)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 7999999863
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=312.63 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=152.6
Q ss_pred CceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCc
Q 000523 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 923 (1445)
Q Consensus 844 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1445)
|..+..+||+|.++ +.++++++++|-|.--..+||+||||-||||||++|.|..++ ..|+.+-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc--
Confidence 44678899988875 346799999999999999999999999999999999998763 45665432
Q ss_pred cCCcccccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 924 PKKQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 924 ~~~~~~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.+-.+|+..|+.. +...-|.-|.|.- . .+ .+.++ ....+-.+||...++++- +..|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr---~-FN--lpyq~----ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQR---K-FN--LPYQE----ARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHH---h-cC--CChHH----HHHHhhhhhhhhccceEe----eeecCC
Confidence 2335788877632 3344566665532 1 11 22222 345678889988888863 567999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
|||-||++|..-++.|+||+|||||++||..+...+-++|+++ ...||+++||-.. |.+--+.++++.+.|.---.
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9999999999999999999999999999999999999999887 4579999999764 55666778888776543344
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
|..
T Consensus 784 GdF 786 (807)
T KOG0066|consen 784 GDF 786 (807)
T ss_pred ccH
Confidence 443
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=332.32 Aligned_cols=205 Identities=20% Similarity=0.293 Sum_probs=166.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCC----c----CccceEEEEcCCCC-
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----F----VPQRTAAYISQHDN- 236 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~- 236 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 4999999999999999999999999999999999999998 9999999988642 1 12357999999863
Q ss_pred CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-cccccc
Q 000523 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1445)
.+...||+||+.|+....+.. . .+....++.+++.++|+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN-K---------------------------------QEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCChhHhcCC
Confidence 234569999998864322110 0 00112356678889995 445543
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.+.||++
T Consensus 148 -----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 -----PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred -----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE
Confidence 4469999999999999999999999999999999999999999999987653 3455666888888999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=328.11 Aligned_cols=216 Identities=24% Similarity=0.299 Sum_probs=179.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4788999887631 11358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ...++.++|++|++. +++..|+.+++.+..... ....+...+.++++++.+++.+..+.. ++.||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 677789999998864322 123344455678999999998777665 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.. +|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 3554 999999985 79999
Q ss_pred EcCCC
Q 000523 1081 VGPLG 1085 (1445)
Q Consensus 1081 ~G~~~ 1085 (1445)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99863
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=288.30 Aligned_cols=197 Identities=26% Similarity=0.388 Sum_probs=170.4
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc------c-ccceEEEeccCCC
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------T-FARISGYCEQNDI 942 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gyv~Q~d~ 942 (1445)
+...||++|++.|++||-+||+|||||||||||-+|+|... +.+|+|.+.|+++... . ..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 45789999999999999999999999999999999999876 4589999999886431 2 2467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 000523 943 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022 (1445)
Q Consensus 943 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illL 1022 (1445)
+.|++|..||+...+.++.....+ ......+.++.+||.+..+.. +..|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~~~---~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESSAD---SRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcccc---HHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEec
Confidence 999999999999998887643222 233456789999998876665 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1023 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
||||-+||..+...|.+++-.+.+ .|.|.|++||||. +..-|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 999999999999999999988865 5999999999985 6778999999986 6765
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=330.43 Aligned_cols=218 Identities=22% Similarity=0.299 Sum_probs=179.4
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.++.... ...+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecc
Confidence 678888887742100 012469999999999999999999999999999999999876 45899999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 927 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 927 ~----~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
. ...++.+||++|++. .+...||.|++.|..... .....+.++.++++++.++|.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 147 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSG 147 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 3 234567999999974 233469999998875432 2233445567899999999988877763 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++. +. .+|++++|++ |++++
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~-G~i~~ 224 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDS-GKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 9999999999873 54 4999999986 79999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 225 ~g~~ 228 (280)
T PRK13633 225 EGTP 228 (280)
T ss_pred ecCH
Confidence 9985
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=323.76 Aligned_cols=209 Identities=25% Similarity=0.348 Sum_probs=174.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367888887763 2359999999999999999999999999999999999865 4589999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 1001 (1445)
.. ...++.++|++|++.+++ .|++|++.+....+ . . ..+.++++++.+++. +..+.. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 42 234567999999988776 69999998754322 1 1 123567889999996 455543 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57788999999985 78998
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=316.39 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=161.6
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC---c----ccccceEEEeccCCCCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 944 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~d~~~ 944 (1445)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999876 45899999998742 1 12356799999999988
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000523 945 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1445)
Q Consensus 945 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDE 1024 (1445)
+..|++||+.+....+ ........+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8999999999865432 123334455688999999998777765 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEE
Q 000523 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1445)
Q Consensus 1025 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l 1072 (1445)
||+|||+.++..+.+.|+++.++|.|||+++|++. +.+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777899999999985 34679998875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=331.67 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=176.8
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.++... .....+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 478899988764210 001259999999999999999999999999999999999876 4589999999875
Q ss_pred C--------cccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000523 926 K--------QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPG 995 (1445)
Q Consensus 926 ~--------~~~~~~~~gyv~Q~d~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 995 (1445)
. ...+++.++|++|++.. ....|++||+.|..... ....+...+.++++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 3 12345679999999632 22469999998864322 123334445678899999994 555554
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 996 ~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999876 4899999999986 57889999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 799998875
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=366.91 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=165.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
++|+|+|++++||+.++|+|+||||||||+|+|+|+++|+ +|+|.+||.++++... ++.++||+|++.++ +.|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccc-ccc
Confidence 3899999999999999999999999999999999999998 9999999999887654 46899999987555 579
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
++||+.++.. ....+.+.++++.. ..+..++ .+++..||.+|+.+ +
T Consensus 425 i~~Ni~~~~~----~~~d~~i~~al~~~---------------------------~l~~~i~--~lp~gldt~i~~~g-~ 470 (588)
T PRK13657 425 IEDNIRVGRP----DATDEEMRAAAERA---------------------------QAHDFIE--RKPDGYDTVVGERG-R 470 (588)
T ss_pred HHHHHhcCCC----CCCHHHHHHHHHHh---------------------------CHHHHHH--hCcccccchhcCCC-C
Confidence 9999987531 11111111111110 0111122 36777899999764 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.||||||||++|||+|+++|++++||||||+||+.++..+.+.|++.. .++|+|+ ++|+. +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIi-itHr~-~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFI-IAHRL-STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEE-EEecH-HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998753 3455555 55544 5567899999999999
Q ss_pred EEEecChhHHHH
Q 000523 403 IVYQGPRELVLE 414 (1445)
Q Consensus 403 iv~~G~~~~~~~ 414 (1445)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999998864
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=317.73 Aligned_cols=195 Identities=24% Similarity=0.373 Sum_probs=162.9
Q ss_pred cceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000523 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1445)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1445)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999998 9999999998765432 357999999988888999999998
Q ss_pred HhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhh
Q 000523 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1445)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1445)
++..... ... .+.+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KLT---------------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-Ccc---------------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7542110 000 001123567888999987666554 4699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEec
Q 000523 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1445)
Q Consensus 329 rqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1445)
|||++||++|+.+|++++|||||+|||..++..+.+.|+++.. ..+.+|+.++|+..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA-ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999998754 33455666888889999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=318.91 Aligned_cols=196 Identities=26% Similarity=0.354 Sum_probs=166.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+|
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 4999999999999999999999999999999999999998 999999998775422 357999999988888899999
Q ss_pred HHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCC
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1445)
|+.+.....+.. ...+..+++.+||++..|..+ ..||
T Consensus 90 ~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS 126 (223)
T TIGR03740 90 NLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKA-----KQFS 126 (223)
T ss_pred HHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhH-----hhCC
Confidence 998765322100 012456778899987666544 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1445)
Q Consensus 326 GGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1445)
||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+.+|++++|++|++++
T Consensus 127 ~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999998753 3 4455557788888999999999999999999
Q ss_pred ecChh
Q 000523 406 QGPRE 410 (1445)
Q Consensus 406 ~G~~~ 410 (1445)
.|+..
T Consensus 205 ~~~~~ 209 (223)
T TIGR03740 205 QGKIN 209 (223)
T ss_pred ecChh
Confidence 99865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=328.25 Aligned_cols=209 Identities=24% Similarity=0.369 Sum_probs=170.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 4999999999999999999999999999999999999998 9999999988754322 357999999888889999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|.||+.++.... .... .. + . ......++.+++.+||++..++.++
T Consensus 102 v~e~l~~~~~~~-~~~~--------------~~-~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 146 (265)
T PRK10575 102 VRELVAIGRYPW-HGAL--------------GR-F-G-------------AADREKVEEAISLVGLKPLAHRLVD----- 146 (265)
T ss_pred HHHHHHhCcccc-cccc--------------cC-C-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc-----
Confidence 999998753110 0000 00 0 0 0012235678889999876665554
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.... +++|+.++|+..++.+.+|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~-~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER-GLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 599999999999999999999999999999999999999999999876432 4556667888889999999999999999
Q ss_pred EEEecChhHHH
Q 000523 403 IVYQGPRELVL 413 (1445)
Q Consensus 403 iv~~G~~~~~~ 413 (1445)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999887653
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=365.73 Aligned_cols=256 Identities=21% Similarity=0.292 Sum_probs=192.7
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.+...+|+.++++.+++. .+ +....+....+++++|+++.++.
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~-----~~--~~~~~~~~~~~I~~~~v~~~y~~--------------------------- 325 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVV-----KD--GSEPVPEGRGELDVNIRQFTYPQ--------------------------- 325 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cC--CCCCCCCCCCcEEEEEEEEECCC---------------------------
Confidence 556777888888877665431 00 00011112346999999998732
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
.+..+|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 326 -----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 326 -----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred -----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 1124899999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.++. .|++||+.++.. ....+.+.++++. .+. +. ....|+++.||
T Consensus 398 ~~lf~-~ti~~Ni~~~~~----~~~~~~~~~~~~~---~~l------------------------~~--~i~~lp~gl~t 443 (569)
T PRK10789 398 PFLFS-DTVANNIALGRP----DATQQEIEHVARL---ASV------------------------HD--DILRLPQGYDT 443 (569)
T ss_pred Ceecc-ccHHHHHhcCCC----CCCHHHHHHHHHH---cCC------------------------HH--HHHhCcCcccc
Confidence 76665 699999987531 1111111111110 000 00 12356788899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+ ..||||||||++|||+++++|++++|||||++||+.++..+.+.|+++. .++|+|+ ++|+. +..+.+|+
T Consensus 444 ~~~~~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~-itH~~-~~~~~~d~ 518 (569)
T PRK10789 444 EVGERG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVII-SAHRL-SALTEASE 518 (569)
T ss_pred eecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-hHHHcCCE
Confidence 999864 4699999999999999999999999999999999999999999998853 4556555 44444 45577999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+++.+|+++++.+
T Consensus 519 i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998864
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=326.71 Aligned_cols=219 Identities=21% Similarity=0.256 Sum_probs=175.4
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC---CeEEEEEEEc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 921 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 921 (1445)
..+.++|+++.++ .+.+|+|+|++|++||+++|+|||||||||||++|+|..+. .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999988763 24699999999999999999999999999999999997542 1368999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000523 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996 (1445)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1445)
|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. ... ..++.++++++.+++....+..... .+
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~-~~ 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNE-SG 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCC-Cc
Confidence 987531 234567999999988887 499999988764332 111 2234567788888874311111111 14
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec--
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR-- 1074 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~-- 1074 (1445)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~ 230 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEE 230 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccc
Confidence 67999999999999999999999999999999999999999999999854 789999999986 58889999999985
Q ss_pred --------CcEEEEEcCC
Q 000523 1075 --------GGQEIYVGPL 1084 (1445)
Q Consensus 1075 --------gG~~~y~G~~ 1084 (1445)
+|++++.|+.
T Consensus 231 ~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 231 VEGGSGGKVGYLVEFNET 248 (269)
T ss_pred cccccccccceEEEeCCH
Confidence 3678999886
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=324.29 Aligned_cols=212 Identities=21% Similarity=0.303 Sum_probs=167.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCC--CcC---ccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~ 238 (1445)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++. ... .++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 4899999999999999999999999999999999999862 012899999999875 221 235799999998889
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.+||.||+.++....+..... ++....++++++.+||....... -+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKKAALWDEVKDR-LN 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHHcCCccchhhh-hc
Confidence 9999999998865322110000 00112345677788874321111 12
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++...+|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998743 3 45666788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=327.00 Aligned_cols=209 Identities=23% Similarity=0.377 Sum_probs=170.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+|
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 4999999999999999999999999999999999999998 9999999998755332 356999999988888999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.++..-.. +. . ... .+.....++++++.+||++..++. ++
T Consensus 98 v~~~~~~~~~~~~-~~----~-------------~~~------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (265)
T PRK10253 98 VQELVARGRYPHQ-PL----F-------------TRW------------RKEDEEAVTKAMQATGITHLADQS-----VD 142 (265)
T ss_pred HHHHHHhCccccc-cc----c-------------cCC------------CHHHHHHHHHHHHHcCCHHHhcCC-----cc
Confidence 9999987521000 00 0 000 000112356788899998665554 45
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+..++.+++|++++|++|+
T Consensus 143 ~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 143 TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR-EKGYTLAAVLHDLNQACRYASHLIALREGK 221 (265)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998764 334556667888889999999999999999
Q ss_pred EEEecChhHHH
Q 000523 403 IVYQGPRELVL 413 (1445)
Q Consensus 403 iv~~G~~~~~~ 413 (1445)
+++.|+.+++.
T Consensus 222 i~~~g~~~~~~ 232 (265)
T PRK10253 222 IVAQGAPKEIV 232 (265)
T ss_pred EEEeCCHHHHh
Confidence 99999988764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=320.96 Aligned_cols=202 Identities=23% Similarity=0.408 Sum_probs=168.4
Q ss_pred cceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 000523 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1445)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1445)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999998 9999999998765432 357999999988899999999998
Q ss_pred HhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhh
Q 000523 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1445)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1445)
++... ..... ......++++++.+||++..++.+. .|||||
T Consensus 94 ~~~~~-~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKLN---------------------------------AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred ccccc-ccCCC---------------------------------HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 75321 00000 0012245678899999876666554 699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecC
Q 000523 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1445)
Q Consensus 329 rqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1445)
|||++||++++.+|++++|||||+|||..++..+.+.|+++.+.. +++++.++|+..++.+.+|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999876533 4455557888889999999999999999999999
Q ss_pred hhHHHH
Q 000523 409 RELVLE 414 (1445)
Q Consensus 409 ~~~~~~ 414 (1445)
.+++.+
T Consensus 214 ~~~~~~ 219 (232)
T PRK10771 214 TDELLS 219 (232)
T ss_pred HHHHHh
Confidence 887643
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=329.73 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=179.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCe-EEEEEEEcCcc
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 924 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~ 924 (1445)
.++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|..++.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4778888887631 12359999999999999999999999999999999999865321 13899999988
Q ss_pred CCc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 925 KKQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
... ...++.+||++|++. .++..||.|++.|....+ ....++.++.++++++.++|.+..+.. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 653 234567999999974 567789999998764322 233445556788999999998877765 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++. + +.+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 8999999999863 4 57999999985 7999
Q ss_pred EEcCC
Q 000523 1080 YVGPL 1084 (1445)
Q Consensus 1080 y~G~~ 1084 (1445)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99985
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=321.63 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=175.4
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.++. + ..|||+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 467788877631 1 138999999999999999999999999999999875 45899999998754
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 927 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 927 ~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+++.+..+..+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 12456999999999999999999998753211 111 1233456889999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999985 799999885
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.33 Aligned_cols=219 Identities=26% Similarity=0.293 Sum_probs=174.7
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC--CC-eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1445)
-+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 377888887763 2369999999999999999999999999999999999632 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+........ .+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHD-SAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhc-Ccc
Confidence 87632 134567999999988777 899999988654321 112233345677889998875321111111 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 57888999999985 78
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 225 i~~~g~~ 231 (252)
T PRK14239 225 LIEYNDT 231 (252)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=320.22 Aligned_cols=204 Identities=27% Similarity=0.425 Sum_probs=171.0
Q ss_pred eeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHH
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1445)
+|+|+|++++|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998765332 467999999988898999999
Q ss_pred HHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCC
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1445)
|+.++....+... .+....+.++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9987643221100 001123456788899987666554 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1445)
Q Consensus 326 GGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1445)
|||||||+||++++.+|++++|||||+|||..++.++.+.|+++....+ ++++.++|+.+++.+.+|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG-VTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998765334 455557778888999999999999999999
Q ss_pred ecChhHHH
Q 000523 406 QGPRELVL 413 (1445)
Q Consensus 406 ~G~~~~~~ 413 (1445)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=320.45 Aligned_cols=205 Identities=27% Similarity=0.410 Sum_probs=170.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1445)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998765433 36799999998888889999
Q ss_pred HHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccC
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1445)
||+.+..+..+... ......++++++.+++....++.+ +.|
T Consensus 91 enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGLGDRYP-----NQL 131 (237)
T ss_pred HHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh-----hhC
Confidence 99987654321100 001123466788899976666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv 404 (1445)
|||||||++||++|+.+|++++|||||+|||..++..+.+.|++... ..+.+|+.++|...++.+.+|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 32445555777778889999999999999999
Q ss_pred EecChhHHH
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 ~~G~~~~~~ 413 (1445)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=319.65 Aligned_cols=199 Identities=27% Similarity=0.391 Sum_probs=171.3
Q ss_pred EeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcc-cccceEEEeccCCCCCCCCCHHHH
Q 000523 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYES 952 (1445)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~ 952 (1445)
+|+|+|++|+|||+++|+|+||||||||+++|+|..+ +..|+|.++|.+.... ..++.++|++|++.+++.+|+.|+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999866 4589999999876532 234579999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000523 953 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032 (1445)
Q Consensus 953 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~ 1032 (1445)
+.+..... .......++.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999988777663 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1033 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1033 ~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998764 899999999986 47788999999985 799999875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=317.86 Aligned_cols=194 Identities=31% Similarity=0.459 Sum_probs=160.0
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC-CCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGE 240 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1445)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 35999999999999999999999999999999999999998 9999999988754322 357999999864 4678
Q ss_pred CCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccc
Q 000523 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1445)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1445)
+||+||+.++....+... .+....++++++.+||++..+..+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999987643221000 001123566788999986666544
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++..+||+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998764 3 45566688888899999999999999
Q ss_pred Ce
Q 000523 401 GQ 402 (1445)
Q Consensus 401 G~ 402 (1445)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.61 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=175.9
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
-+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 367888887663 246999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1445)
.++.. ...++.++|++|++.+++ .|++||+.|....... ......++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 123567999999988887 8999999886543211 122334456788999998753 22322
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
...||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 467999999999999999999999999999999999999999999999876 689999999986 5788899999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 799999885
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=334.57 Aligned_cols=217 Identities=18% Similarity=0.188 Sum_probs=171.3
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC-CceeEEEEcCccCCCcCc-------cceEEEEcCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1445)
..+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 459999999999999999999999999999999999987411 128999999998765432 246999999875
Q ss_pred --CCCCCCHHHHHHHhHHhcCC-CchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 237 --HIGEMTVRETLAFSARCQGV-GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
+.+.+||.+++.+....... +... ++ ..+....+.++|+.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~-------------~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QR-------------FGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------cc-------------HHHHHHHHHHHHHHCCCCChHH
Confidence 67889999999764221000 0000 00 0011234677899999975321
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
+.++.+..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.. ..+.+++.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCC
Confidence 12344567999999999999999999999999999999999999999999999764 335667778999999999999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 000523 394 DIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~ 413 (1445)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998774
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=324.06 Aligned_cols=219 Identities=19% Similarity=0.247 Sum_probs=176.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC--C-eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 922 (1445)
-+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478889887763 24699999999999999999999999999999999997642 1 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.+... ...++.+||++|++.+++. ||+||+.+....+. ....++.++.++++++.+++.+........ .+.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHT-QAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87632 2345679999999888875 99999988654321 112233445577889999885421111111 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 57888999999985 89
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9999885
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.96 Aligned_cols=218 Identities=18% Similarity=0.243 Sum_probs=173.8
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC--C-eEEEEEEEcCcc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISGYP 924 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~~ 924 (1445)
+++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 4667766652 24699999999999999999999999999999999997541 1 358999999987
Q ss_pred CCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000523 925 KKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 999 (1445)
Q Consensus 925 ~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 999 (1445)
+.. ...++.++|++|++.+++. |+.||+.+....+.. .......++.++++++.+++.+........ .+..|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhC
Confidence 532 1245679999999888775 999999886433311 112233445678899999986522111111 14679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1000 SgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |+++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~ 227 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIV 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999985 4899999999986 57788999999986 7999
Q ss_pred EEcCC
Q 000523 1080 YVGPL 1084 (1445)
Q Consensus 1080 y~G~~ 1084 (1445)
+.|+.
T Consensus 228 ~~~~~ 232 (251)
T PRK14244 228 EYNTT 232 (251)
T ss_pred EeCCH
Confidence 98875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=315.91 Aligned_cols=173 Identities=24% Similarity=0.296 Sum_probs=136.3
Q ss_pred eecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000523 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 954 (1445)
Q Consensus 875 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 954 (1445)
|.==.+.|..||+++++||||-||||+.++|+|..+ +.+|+ .. .-.++|=||--.-....||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 444457888999999999999999999999999776 34554 11 123678888655556789999775
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000523 955 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1034 (1445)
Q Consensus 955 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~ 1034 (1445)
-...-+... .-...++++-|+|.++.+..+ .+|||||.|||+||.+|.+++++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 433221111 112357888899999888874 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 1035 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 1035 ~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
..+-++||+... +++|.+++-||... +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999875 47899999999753 445678888775
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=367.60 Aligned_cols=257 Identities=22% Similarity=0.364 Sum_probs=194.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.+...+|+.+.++.+++. .. +....+.....++++||++.++.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 342 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEK-----DT--GTRAIERARGDVEFRNVTFRYPG--------------------------- 342 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CC--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 567788888888887665441 00 00011112346999999999742
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
. ..++|+|+|+++++||.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 343 --~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 343 --R---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred --C---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 1 124899999999999999999999999999999999999998 9999999999876653 4679999997
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+ ++++.|++|||.++..- ....+.+.++++.. + .++.+ -.|++..||
T Consensus 415 ~-~lf~~Ti~~Ni~~~~~~---~~~~~~i~~~l~~~---~------------------------l~~~i--~~lp~gldt 461 (571)
T TIGR02203 415 V-VLFNDTIANNIAYGRTE---QADRAEIERALAAA---Y------------------------AQDFV--DKLPLGLDT 461 (571)
T ss_pred c-ccccccHHHHHhcCCCC---CCCHHHHHHHHHHc---C------------------------hHHHH--HhCcCcccc
Confidence 7 45567999999876310 01111122111110 0 11112 236677899
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+.+ +.||||||||++|||+++++|++++||||||+||..++..+.+.|++.. .++|+|+ ++|+. +..+.||+
T Consensus 462 ~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIi-itH~~-~~~~~~D~ 536 (571)
T TIGR02203 462 PIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLV-IAHRL-STIEKADR 536 (571)
T ss_pred eecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eehhh-HHHHhCCE
Confidence 999875 4699999999999999999999999999999999999999999998753 3455555 44443 66788999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|+++..|+++++.+
T Consensus 537 ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999998864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=396.11 Aligned_cols=257 Identities=19% Similarity=0.230 Sum_probs=197.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHh-hcCCC-CC-cceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRID-RVGID-LP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1445)
.+....++||+.++.+.++|. ....+ ....+ -| ..+|+|+||++.|..
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~-----~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1249 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEA-----PLVIENNRPPPGWPSSGSIKFEDVVLRYRP------------------------ 1249 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCcc-----cccccCCCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 367788899999988766551 00000 00011 12 357999999999842
Q ss_pred hhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 000523 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1445)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv 231 (1445)
...++|+|+|++|+|||.+||+|++|||||||+++|.|.++|+ +|+|.+||.++++... ++.++||
T Consensus 1250 --------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1250 --------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred --------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEE
Confidence 1124999999999999999999999999999999999999998 9999999999987754 5789999
Q ss_pred cCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccc
Q 000523 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1445)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1445)
||++.+|. .||||||.++.. ...+.+.+++++. +. +.. +-.|+.+
T Consensus 1319 pQdp~LF~-GTIreNLd~~~~-----~tdeei~~Al~~a---~l------------------------~~~--I~~lp~G 1363 (1622)
T PLN03130 1319 PQAPVLFS-GTVRFNLDPFNE-----HNDADLWESLERA---HL------------------------KDV--IRRNSLG 1363 (1622)
T ss_pred CCCCcccc-ccHHHHhCcCCC-----CCHHHHHHHHHHc---Cc------------------------HHH--HHhCccc
Confidence 99876665 699999986421 1122222222221 10 111 2246778
Q ss_pred ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000523 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1445)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1445)
.||.||+.+. +||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. . +.+++++.|.. ++...
T Consensus 1364 Ldt~Vge~G~-nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~-~~TvI~IAHRL-~tI~~ 1438 (1622)
T PLN03130 1364 LDAEVSEAGE-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--K-SCTMLIIAHRL-NTIID 1438 (1622)
T ss_pred cCccccCCCC-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--C-CCEEEEEeCCh-HHHHh
Confidence 8999998655 699999999999999999999999999999999999999999999753 3 34555566655 45556
Q ss_pred cCeEEEecCCeEEEecChhHHHH
Q 000523 392 FDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1445)
||+|++|++|+|+++|+++++++
T Consensus 1439 ~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1439 CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=333.26 Aligned_cols=225 Identities=16% Similarity=0.198 Sum_probs=178.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC--CeEEEEEEEcCcc
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYP 924 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~ 924 (1445)
+.++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|.... .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788888776421 1235699999999999999999999999999999999997642 2468999999987
Q ss_pred CCc---cc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCccccccccc
Q 000523 925 KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVG 992 (1445)
Q Consensus 925 ~~~---~~----~~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~vg 992 (1445)
+.. .. .++.++||+|++. +.|.+||.+++........... ....+.++.+.++++.++|.+..+..
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-- 152 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM-- 152 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH--
Confidence 642 11 1246999999975 5788999999976422111000 11123455688999999997532211
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeE
Q 000523 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 1071 (1445)
Q Consensus 993 ~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~ 1071 (1445)
...+..|||||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 1114689999999999999999999999999999999999999999999999864 899999999986 57788999999
Q ss_pred EecCcEEEEEcCC
Q 000523 1072 MKRGGQEIYVGPL 1084 (1445)
Q Consensus 1072 l~~gG~~~y~G~~ 1084 (1445)
|++ |+++..|+.
T Consensus 232 m~~-G~ive~g~~ 243 (330)
T PRK15093 232 LYC-GQTVETAPS 243 (330)
T ss_pred EEC-CEEEEECCH
Confidence 985 899999985
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=310.29 Aligned_cols=190 Identities=49% Similarity=0.849 Sum_probs=162.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCC--CCCeEEEEEEEcCc
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 923 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~ 923 (1445)
.+.++|+++.++.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 4778888887742100 01246999999999999999999999999999999999986 5 56899999998
Q ss_pred cCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000523 924 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1003 (1445)
Q Consensus 924 ~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1003 (1445)
+......++.++|++|++.+++.+|++|++.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445677999999998888999999997642110 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1004 rqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986567788999999986 7887764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.07 Aligned_cols=219 Identities=21% Similarity=0.283 Sum_probs=175.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+.. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887763 235999999999999999999999999999999999965321 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKK-SAL 145 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhc-CCC
Confidence 87642 234567999999988777 8999999986543311 12233455678888888875311111111 146
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFLN-GE 222 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4799999999986 57788999999986 78
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
++..|+.
T Consensus 223 i~~~~~~ 229 (250)
T PRK14240 223 IVEFGDT 229 (250)
T ss_pred EEEeCCH
Confidence 9998874
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.10 Aligned_cols=218 Identities=23% Similarity=0.319 Sum_probs=175.5
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcCc
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 923 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1445)
++++|+++.+. ++.+|+|+|++|++||+++|+|+|||||||||++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888887663 236999999999999999999999999999999999975421 25899999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000523 924 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 998 (1445)
Q Consensus 924 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1445)
+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+.... ..+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhh
Confidence 7542 134567999999988887 899999988654321 11223344557888999988642111111 12468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 789999999986 57888999999986 789
Q ss_pred EEEcCC
Q 000523 1079 IYVGPL 1084 (1445)
Q Consensus 1079 ~y~G~~ 1084 (1445)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 998875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=325.37 Aligned_cols=208 Identities=26% Similarity=0.392 Sum_probs=169.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 4999999999999999999999999999999999999998 9999999988654322 356999999988888899
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|.||+.++..-.. .. .... ..+....++++++.+||++..++.+ +
T Consensus 93 v~~~i~~~~~~~~--~~----------------~~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 137 (255)
T PRK11231 93 VRELVAYGRSPWL--SL----------------WGRL------------SAEDNARVNQAMEQTRINHLADRRL-----T 137 (255)
T ss_pred HHHHHHhccchhh--hh----------------ccCC------------CHHHHHHHHHHHHHcCCHHHHcCCc-----c
Confidence 9999987531000 00 0000 0001223567788999987666554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+.+|++++|++|+
T Consensus 138 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 138 DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999998754 3 4556667888889999999999999999
Q ss_pred EEEecChhHHH
Q 000523 403 IVYQGPRELVL 413 (1445)
Q Consensus 403 iv~~G~~~~~~ 413 (1445)
+++.|+.+++.
T Consensus 216 i~~~~~~~~~~ 226 (255)
T PRK11231 216 VMAQGTPEEVM 226 (255)
T ss_pred EEEEcCHHHhc
Confidence 99999987763
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=326.50 Aligned_cols=223 Identities=21% Similarity=0.256 Sum_probs=179.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++++..+.. +...+.+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 778899887742110 000012469999999999999999999999999999999999876 45899999998764
Q ss_pred cc---cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCC
Q 000523 927 QE---TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~---~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LS 1000 (1445)
.. ..++.++|++|++. +.+.+|+.|++.+....+. ........+.++++++.++|. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 21 22356999999874 5678899999988654432 223334445688999999994 455544 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~ 1079 (1445)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57778999999985 7999
Q ss_pred EEcCC
Q 000523 1080 YVGPL 1084 (1445)
Q Consensus 1080 y~G~~ 1084 (1445)
+.|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=324.70 Aligned_cols=208 Identities=29% Similarity=0.430 Sum_probs=169.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 346999999987788899
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.++..... +.. . .+ ..+....++++++.+||.+..++.+ .
T Consensus 92 v~e~l~~~~~~~~---------~~~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 136 (256)
T TIGR03873 92 VRDVVALGRIPHR---------SLW------A-GD--------------SPHDAAVVDRALARTELSHLADRDM-----S 136 (256)
T ss_pred HHHHHHhcchhhh---------hhc------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCc-----c
Confidence 9999987531000 000 0 00 0001124567788999976666554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|+..++.+.+|+|++|++|+
T Consensus 137 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 137 TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 6999999999999999999999999999999999999999999998753 3 4556667888889999999999999999
Q ss_pred EEEecChhHHH
Q 000523 403 IVYQGPRELVL 413 (1445)
Q Consensus 403 iv~~G~~~~~~ 413 (1445)
+++.|+.+++.
T Consensus 215 i~~~g~~~~~~ 225 (256)
T TIGR03873 215 VVAAGPPREVL 225 (256)
T ss_pred EEEecCHHHhh
Confidence 99999987753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=325.82 Aligned_cols=215 Identities=24% Similarity=0.317 Sum_probs=171.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC--------ccceEEEEcCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--------PQRTAAYISQHDNH 237 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~d~~ 237 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 4999999999999999999999999999999999999875223599999998874321 13568999999888
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
++.+||+||+.++..... . ..... ... ...+....++++++.+||++..|..+
T Consensus 98 ~~~~tv~e~l~~~~~~~~-----~----~~~~~--~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~- 150 (262)
T PRK09984 98 VNRLSVLENVLIGALGST-----P----FWRTC--FSW---------------FTREQKQRALQALTRVGMVHFAHQRV- 150 (262)
T ss_pred ccCCcHHHHHHhhhcccc-----c----chhhh--ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc-
Confidence 999999999987542100 0 00000 000 00011234677899999987666554
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1445)
..|||||||||+|||+|+.+|++|+|||||+|||..++..+.+.|+++.+. .+++|+.++|+..++.+.+|+|++
T Consensus 151 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 151 ----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred ----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999987653 345666678888889999999999
Q ss_pred ecCCeEEEecChhHH
Q 000523 398 LSDGQIVYQGPRELV 412 (1445)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (1445)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999998764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=325.69 Aligned_cols=207 Identities=22% Similarity=0.261 Sum_probs=169.2
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC--CCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN--HIG 239 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1445)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +.+
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 35999999999999999999999999999999999999998 9999999988753221 246999999864 567
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-ccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1445)
.+||.|++.+..+...... ..+....++.+++.+||. +..+..
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 146 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------------------------------PEQREKQIIETLRQVGLLPDHASYY--- 146 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------------------------------HHHHHHHHHHHHHHcCCChHHHhcC---
Confidence 8899999987653321000 001112456788999994 444543
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+..++..+||++++|
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 147 --PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred --chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 346999999999999999999999999999999999999999999998764 33455666788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=323.85 Aligned_cols=229 Identities=17% Similarity=0.243 Sum_probs=177.7
Q ss_pred CCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHH
Q 000523 113 DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKT 192 (1445)
Q Consensus 113 ~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 192 (1445)
+.|...++++|+++.+. ..++|+|+|+++++|++++|+||||||||
T Consensus 8 ~~~~~~l~~~~l~~~~~----------------------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKS 53 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYG----------------------------------KFHALKNINLDIAKNQVTAFIGPSGCGKS 53 (260)
T ss_pred cCCCceEEEEEEEEEeC----------------------------------CeEEeeceeEEEcCCCEEEEECCCCCCHH
Confidence 45667789999998762 12489999999999999999999999999
Q ss_pred HHHHHHhCCCC--CCCCceeEEEEcCccCCCc--C---ccceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHH
Q 000523 193 TLLLALAGKLD--PTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTE 265 (1445)
Q Consensus 193 TLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 265 (1445)
||+++|+|.++ |....+|+|.++|.++... . .++.++|++|++.+++ +||+||+.++..... +...
T Consensus 54 TLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~-~~~~----- 126 (260)
T PRK10744 54 TLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE-KLSR----- 126 (260)
T ss_pred HHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC-CCCH-----
Confidence 99999999986 2101289999999887421 1 2457999999887776 899999988653221 0000
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccc
Q 000523 266 LARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345 (1445)
Q Consensus 266 ~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vl 345 (1445)
.+....++++++.+||........ ++....||||||||++||++|+.+|++|
T Consensus 127 ---------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~ll 178 (260)
T PRK10744 127 ---------------------------AEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVL 178 (260)
T ss_pred ---------------------------HHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 001123566788888743211111 2344579999999999999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHH
Q 000523 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 346 lLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
+|||||+|||..++..+.+.|+++. .+ ++|+.++|+..++.+++|++++|++|+++..|+.+++.
T Consensus 179 lLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 179 LLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999873 33 45666788888889999999999999999999988764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.50 Aligned_cols=219 Identities=22% Similarity=0.246 Sum_probs=175.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367788877663 246999999999999999999999999999999999976531 3589999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000523 923 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 998 (1445)
Q Consensus 923 ~~~~~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1445)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+..++.++++++.+++.+........ ....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 87531 234567999999988887 899999987643221 111233345577888888875421111111 1467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 689999999986 57888999999985 799
Q ss_pred EEEcCC
Q 000523 1079 IYVGPL 1084 (1445)
Q Consensus 1079 ~y~G~~ 1084 (1445)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 999875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=339.81 Aligned_cols=195 Identities=24% Similarity=0.362 Sum_probs=168.5
Q ss_pred cceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCCCCCCCC
Q 000523 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1445)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|+..+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999886531 12467999999999999999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.|+.+.. ....++++++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998853200 0123567788999987666544 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++..++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999987653 34556668889999999999999999999
Q ss_pred EEEecChhHHH
Q 000523 403 IVYQGPRELVL 413 (1445)
Q Consensus 403 iv~~G~~~~~~ 413 (1445)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999884
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=315.50 Aligned_cols=199 Identities=21% Similarity=0.347 Sum_probs=164.9
Q ss_pred eeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHH
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1445)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 357999999999999999999999999999999999998 999999999875432 2467999999998899999999
Q ss_pred HHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCC
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1445)
|+.+..... .... .+....++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~-~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPG-LKLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhcc-CCcc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 998753210 0000 001123566788999987666544 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1445)
Q Consensus 326 GGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1445)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.. ..+++|+.++|+..++.+.+|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998764 334556667888888899999999999999998
Q ss_pred ecC
Q 000523 406 QGP 408 (1445)
Q Consensus 406 ~G~ 408 (1445)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=325.68 Aligned_cols=204 Identities=22% Similarity=0.289 Sum_probs=168.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1445)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 4899999999999999999999999999999999999998 999999999875432 2467999999864 67788
Q ss_pred CHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccccc
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1445)
||.||+.++....+.. + .+....++++++.+||.+..++. +
T Consensus 98 tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 138 (277)
T PRK13642 98 TVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTRE-----P 138 (277)
T ss_pred CHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCC-----c
Confidence 9999998764321110 0 00112456778889997766654 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G 401 (1445)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+..++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDLDEAA-SSDRILVMKAG 216 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 32445555778888876 69999999999
Q ss_pred eEEEecChhHHH
Q 000523 402 QIVYQGPRELVL 413 (1445)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1445)
+++..|+.+++.
T Consensus 217 ~i~~~g~~~~~~ 228 (277)
T PRK13642 217 EIIKEAAPSELF 228 (277)
T ss_pred EEEEeCCHHHHh
Confidence 999999998874
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=337.11 Aligned_cols=190 Identities=23% Similarity=0.379 Sum_probs=167.0
Q ss_pred cceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000523 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgL 1029 (1445)
+||+.|+.. ...++.++++++.++|.+..+.. +..||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988532 11234578999999998877766 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999999765 899999999986 68889999999985 799999986
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=330.87 Aligned_cols=222 Identities=18% Similarity=0.215 Sum_probs=179.7
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC---CeEEEEEEEc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 921 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 921 (1445)
..++++|+++.+.. +.+.+|+|||++|++||++||+|||||||||||++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36889999988742 123599999999999999999999999999999999997542 2458999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000523 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996 (1445)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1445)
|.++.. ...++.++||+|++.+++ .|++||+.|+..... ..+.+..++.++++++.++|.+-.++.++.. .
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 998742 234677999999988775 799999998643221 1112223345678889888854333344433 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
.+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999875 699999999986 47778999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999986
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=337.59 Aligned_cols=194 Identities=23% Similarity=0.376 Sum_probs=168.9
Q ss_pred cceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000523 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgL 1029 (1445)
+||+.|+.... ...+.++.++++++.++|.+..+.. +..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 1223345688999999998877766 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999765 899999999986 57888999999985 799999885
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=324.30 Aligned_cols=208 Identities=22% Similarity=0.310 Sum_probs=166.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-----CCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~-----~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 235 (1445)
.+|+|+|++|++|++++|+|||||||||||++|+|.++| + +|+|+++|+++... ..++.++|++|++
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV---TGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---ceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 499999999999999999999999999999999999874 5 89999999987532 1245799999988
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
..++ .||.||+.++.+..+..... .+....++++++.+||.+.....
T Consensus 110 ~~~~-~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 110 NPFP-KSIYENVAYGPRIHGLARSK--------------------------------AELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred CCCC-CcHHHHHHHHHHhcccccch--------------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 7776 49999999875432210000 00112356678888886421111
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
. ++.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++..++|++
T Consensus 157 ~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v 232 (267)
T PRK14235 157 L-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRT 232 (267)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEE
Confidence 1 234557999999999999999999999999999999999999999999998743 3 45666788888999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|++|+++.+|+.+++.
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 233 AFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=314.95 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=162.8
Q ss_pred cceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000523 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 877 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
|+|++|++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999875 458999999987531 1235679999999988889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgL 1029 (1445)
.|++.+..... .....++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 1223345678899999998766654 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1030 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
|+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 47788999999985 7887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=354.58 Aligned_cols=210 Identities=26% Similarity=0.389 Sum_probs=176.7
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++++|++|+++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46999999999852 12469999999999999999999999999999999999876 458999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1445)
+.+ ..+++.+|||+|++.+++ .|++||+.++. ++.+. +.++++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 653 457889999999998875 69999997641 22332 336677777777653 35566654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 368999999999999999999999999999999999999999999986 4899999999985 4677999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=291.18 Aligned_cols=200 Identities=27% Similarity=0.390 Sum_probs=176.1
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHH
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 951 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 951 (1445)
..+|+|+|+.|.+||.++++||||||||||||+++|..+ +..|+|.+||.++.... ..-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 358999999999999999999999999999999999887 56899999999876432 22488999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000523 952 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031 (1445)
Q Consensus 952 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~ 1031 (1445)
|+.|+..++. +++.++.+.+.+.+..+||.+..+.. +-.||||||||+.|||||..+|+.|+||||.+.||+
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999998874 66788899999999999999887766 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecC-cEEEEEcCC
Q 000523 1032 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPL 1084 (1445)
Q Consensus 1032 ~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~g-G~~~y~G~~ 1084 (1445)
-+++.++++|-++.+ +|+.++++||+... ..-+.+++++|+.| |+++..=|+
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCC
Confidence 999999999998864 69999999999864 44467999999843 577776665
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=363.18 Aligned_cols=257 Identities=22% Similarity=0.346 Sum_probs=190.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1445)
.++.+..++|+.++.+.+++ ..+..+....+.+..+++++||++.++.
T Consensus 299 ~~~~~~~~~ri~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 346 (585)
T TIGR01192 299 IFEARAKLEDFFDLEDSVFQ-----REEPADAPELPNVKGAVEFRHITFEFAN--------------------------- 346 (585)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCccCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 35666777777777665433 1100010111122346999999998731
Q ss_pred cCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 000523 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1445)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1445)
+ .++|+|+|+++++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 347 ---~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 347 ---S---SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred ---C---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 1 13899999999999999999999999999999999999998 9999999998876543 4689999998
Q ss_pred CCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccc
Q 000523 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1445)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1445)
+.++ +.|++||+.++.. ....+.+.++++.. + .++. ...+++..||
T Consensus 418 ~~lf-~~ti~~Ni~~~~~----~~~~~~~~~a~~~~---~------------------------~~~~--i~~l~~g~~t 463 (585)
T TIGR01192 418 AGLF-NRSIRENIRLGRE----GATDEEVYEAAKAA---A------------------------AHDF--ILKRSNGYDT 463 (585)
T ss_pred CccC-cccHHHHHhcCCC----CCCHHHHHHHHHHh---C------------------------cHHH--HHhccccccc
Confidence 7655 5799999988531 11111111111110 0 0111 2235667789
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
.+|+. ..+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++.. .+.|+|+ ++|..+.+ ..+|+
T Consensus 464 ~~~~~-~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~-isH~~~~~-~~~d~ 538 (585)
T TIGR01192 464 LVGER-GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFI-IAHRLSTV-RNADL 538 (585)
T ss_pred hhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEE-EEcChHHH-HcCCE
Confidence 99875 45699999999999999999999999999999999999999999998753 3455544 56655554 67999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 000523 395 IILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1445)
|++|++|++++.|+++++.+
T Consensus 539 i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 539 VLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EEEEECCEEEEECCHHHHHH
Confidence 99999999999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=338.79 Aligned_cols=199 Identities=25% Similarity=0.410 Sum_probs=169.3
Q ss_pred cceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCCCCCCCC
Q 000523 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1445)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999998 999999998875321 2467999999999999999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.|+.+... . .+....++++++.+||++..|..+ .
T Consensus 92 v~enl~~~~~~~~--~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------------------------------SERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h----------------------------------hHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998653210 0 001123567889999987766554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999876533 4556667888899999999999999999
Q ss_pred EEEecChhHHH
Q 000523 403 IVYQGPRELVL 413 (1445)
Q Consensus 403 iv~~G~~~~~~ 413 (1445)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988774
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=317.25 Aligned_cols=194 Identities=24% Similarity=0.394 Sum_probs=160.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGE 240 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~~ 240 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 4999999999999999999999999999999999999998 99999999887421 123679999999888889
Q ss_pred CCHHHHHHHhHH-hcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
+||+||+.++.. ..+.. ..+....++++++.+||++..++.+
T Consensus 91 ~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 133 (213)
T cd03262 91 LTVLENITLAPIKVKGMS----------------------------------KAEAEERALELLEKVGLADKADAYP--- 133 (213)
T ss_pred CcHHHHHHhHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhhCc---
Confidence 999999988642 11100 0001123566788899987666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|++++|+
T Consensus 134 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 134 --AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVADRVIFMD 209 (213)
T ss_pred --cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998764 3 4456667888899999999999999
Q ss_pred CCeE
Q 000523 400 DGQI 403 (1445)
Q Consensus 400 ~G~i 403 (1445)
+|++
T Consensus 210 ~g~i 213 (213)
T cd03262 210 DGRI 213 (213)
T ss_pred CCcC
Confidence 9974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=322.49 Aligned_cols=220 Identities=21% Similarity=0.283 Sum_probs=177.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC-e--EEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g 922 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 477888887763 235999999999999999999999999999999999976532 2 479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. .+....++.++++++.+++.+....... ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 149 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLN-KSAL 149 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87532 234567999999988887 8999999886543321 1223334567788998888431111111 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec---
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1074 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~--- 1074 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+.
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~ 227 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDES 227 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999865 699999999997 58889999999973
Q ss_pred -CcEEEEEcCC
Q 000523 1075 -GGQEIYVGPL 1084 (1445)
Q Consensus 1075 -gG~~~y~G~~ 1084 (1445)
.|++++.|+.
T Consensus 228 ~~G~i~~~~~~ 238 (259)
T PRK14260 228 RIGQMVEFGVT 238 (259)
T ss_pred CCceEEEeCCH
Confidence 4899999986
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=319.80 Aligned_cols=207 Identities=24% Similarity=0.301 Sum_probs=167.6
Q ss_pred eeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC----CCCceeEEEEcCccCCCcCcc-ceEEEEcCCCC--CCC
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDN--HIG 239 (1445)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~--~~~ 239 (1445)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++.....+ +.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999998 7 99999999987654332 57999999874 556
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.+|+.||+.+.....+.. . .+....++++++.+||++.. ...++
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCchH--HHHhC
Confidence 789999998754321100 0 00122456788999997420 11223
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
.+..|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++.+ ..+++|+.++|+..++..++|++++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4456999999999999999999999999999999999999999999998754 334556667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|+++..|+.+++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=322.16 Aligned_cols=221 Identities=20% Similarity=0.261 Sum_probs=178.3
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.++++|+++.+. +..+|+|+|+++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478899988763 235999999999999999999999999999999999976531 2369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++.. ...++.++|++|+..+++ .|+.||+.+....... ....+.++.+.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 234567999999988887 8999999876433211 12223345678899999886432222222 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecC-
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1075 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~g- 1075 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 588899999999864
Q ss_pred ---cEEEEEcCC
Q 000523 1076 ---GQEIYVGPL 1084 (1445)
Q Consensus 1076 ---G~~~y~G~~ 1084 (1445)
|+++++|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999986
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=323.03 Aligned_cols=229 Identities=20% Similarity=0.273 Sum_probs=179.6
Q ss_pred CCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHH
Q 000523 113 DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKT 192 (1445)
Q Consensus 113 ~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 192 (1445)
+.+...++++||++.+. .+++|+|+|+++++||+++|+||||||||
T Consensus 15 ~~~~~~l~~~nl~~~~~----------------------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKS 60 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG----------------------------------KKEAIKGIDMQFEKNKITALIGPSGSGKS 60 (267)
T ss_pred CCCCeEEEEeeEEEEEC----------------------------------CeeeEeeeEEEEcCCCEEEEECCCCCCHH
Confidence 44455789999998762 12489999999999999999999999999
Q ss_pred HHHHHHhCCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHH
Q 000523 193 TLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTE 265 (1445)
Q Consensus 193 TLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 265 (1445)
|||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++.+..+....
T Consensus 61 TLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~------ 133 (267)
T PRK14237 61 TYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDK------ 133 (267)
T ss_pred HHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCH------
Confidence 9999999998641 01299999999987532 12457999999887776 6999999886532211000
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhcCCccc
Q 000523 266 LARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345 (1445)
Q Consensus 266 ~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vl 345 (1445)
++....++++++.++|.+..++.. ++.++.||||||||++|||+|+.+|+++
T Consensus 134 ---------------------------~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~ll 185 (267)
T PRK14237 134 ---------------------------KVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDIL 185 (267)
T ss_pred ---------------------------HHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 001123556788888864332222 3456679999999999999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhHHH
Q 000523 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 346 lLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
+|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.++||++++|++|++++.|+.+++.
T Consensus 186 lLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 186 LMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999873 33 45666778888999999999999999999999988764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=323.55 Aligned_cols=220 Identities=22% Similarity=0.248 Sum_probs=177.4
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC---CeEEEEEEEc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 921 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 921 (1445)
..++++|+++.+. ++.+|+|+|+.|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3588999988763 23699999999999999999999999999999999998642 1358999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000523 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996 (1445)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1445)
|.+... ..+++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+......+. .+
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Cc
Confidence 987642 2345679999999888875 99999987654321 111223345578889998886421111111 14
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|+++ ++.+.+|++++|++ |
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-G 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999975 789999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
+++..|+.
T Consensus 244 ~i~~~g~~ 251 (272)
T PRK14236 244 KLVEYGDT 251 (272)
T ss_pred EEEecCCH
Confidence 99999875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=320.12 Aligned_cols=202 Identities=27% Similarity=0.322 Sum_probs=165.8
Q ss_pred eecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHH
Q 000523 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (1445)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1445)
|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999998 9999999998765432 248999999889999999999
Q ss_pred HHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChh
Q 000523 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1445)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1445)
.++.+....+.. ..+....++++++.+||++..++.+ +.||||
T Consensus 76 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDLS--------------------------------KSERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 876321000000 0011223567888999987666554 469999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEec
Q 000523 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1445)
Q Consensus 328 qrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1445)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+.+|+.++|+..++.+.+|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999987653 3445666788888999999999999999999988
Q ss_pred ChhHH
Q 000523 408 PRELV 412 (1445)
Q Consensus 408 ~~~~~ 412 (1445)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=318.94 Aligned_cols=201 Identities=24% Similarity=0.315 Sum_probs=166.7
Q ss_pred EeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC--eEEEEEEEcCccCCcccc-cceEEEeccCCC--CCCCCC
Q 000523 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 948 (1445)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~d~--~~~~lT 948 (1445)
+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987531 158999999987654322 357999999974 556789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000523 949 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1445)
Q Consensus 949 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEP 1025 (1445)
+.|++.+....... .....++.++++++.+++.+ ..+.. +..|||||||||+|||+|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999775433211 12333456889999999973 34443 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1026 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1026 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999987 57788999999985 799998875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.93 Aligned_cols=216 Identities=23% Similarity=0.277 Sum_probs=174.6
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCe---EEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 922 (1445)
-+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 366788877663 2469999999999999999999999999999999999865322 379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1445)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 2345679999999999999999999987643321 1122333445667777777642 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999864 799999999987 5777899999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 799999885
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.89 Aligned_cols=211 Identities=22% Similarity=0.335 Sum_probs=166.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 48999999999999999999999999999999999987410 1289999999887421 1235799999998889
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.+||+||+.++....+.... .+....++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 999999999886543210000 001123566778888742111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+.+|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK--QD-YTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 23 45666788888999999999999
Q ss_pred c------CCeEEEecChhHHH
Q 000523 399 S------DGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~------~G~iv~~G~~~~~~ 413 (1445)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 6 79999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=320.36 Aligned_cols=209 Identities=19% Similarity=0.274 Sum_probs=165.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCC---CCCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK---LDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNH 237 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~---~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|. .+|. ..+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 499999999999999999999999999999999997 3331 12899999999875421 23579999998877
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
++ .||+||+.++.+..+.... ......++++++.+||.+...+..
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh-
Confidence 76 6999999886543211000 001123566788888864322222
Q ss_pred ccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000523 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iil 397 (1445)
+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+.+|++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhCCEEEE
Confidence 23455799999999999999999999999999999999999999999999873 34 4566678888899999999999
Q ss_pred ecCCeEEEecChhHHH
Q 000523 398 LSDGQIVYQGPRELVL 413 (1445)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1445)
|++|++++.|+++++.
T Consensus 218 l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 218 FYMGEMVEYDDTKKIF 233 (250)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998874
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=395.07 Aligned_cols=259 Identities=19% Similarity=0.232 Sum_probs=195.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCC-cceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1445)
.+....++||+.+..+.++|.-. ..+ .......-| ..+|+|+||++.|..
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~~--~~~-~~~~~~~~p~~g~I~f~nVsf~Y~~-------------------------- 1246 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEATA--IIE-NNRPVSGWPSRGSIKFEDVHLRYRP-------------------------- 1246 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCccccc--ccc-CCCCCCCCCCCCcEEEEEEEEEECC--------------------------
Confidence 45667888999998876655100 000 000000112 357999999999842
Q ss_pred hcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 000523 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1445)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 233 (1445)
...++|+|+|++|+|||.++|+||+|||||||+++|.|.++|+ +|+|.+||.|+++... ++.++||||
T Consensus 1247 ------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQ 1317 (1495)
T PLN03232 1247 ------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQ 1317 (1495)
T ss_pred ------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECC
Confidence 1124999999999999999999999999999999999999998 9999999999987654 578999999
Q ss_pred CCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
++.+|. .||||||.++.. ...+.+.++.++. +. ++. +-.+++..|
T Consensus 1318 dp~LF~-gTIr~NL~~~~~-----~sdeei~~al~~a---~l------------------------~~~--I~~lp~GLd 1362 (1495)
T PLN03232 1318 SPVLFS-GTVRFNIDPFSE-----HNDADLWEALERA---HI------------------------KDV--IDRNPFGLD 1362 (1495)
T ss_pred CCeeeC-ccHHHHcCCCCC-----CCHHHHHHHHHHc---CC------------------------HHH--HHhCcCCCC
Confidence 886665 699999986421 1112222222111 10 111 124677889
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
|.||+.+. +||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++| ++++.|.. ++...||
T Consensus 1363 t~v~e~G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~T-vI~IAHRl-~ti~~~D 1437 (1495)
T PLN03232 1363 AEVSEGGE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCT-MLVIAHRL-NTIIDCD 1437 (1495)
T ss_pred ceecCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCE-EEEEeCCH-HHHHhCC
Confidence 99998655 599999999999999999999999999999999999999999999752 3344 55566655 5556699
Q ss_pred eEEEecCCeEEEecChhHHHH
Q 000523 394 DIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1445)
+|++|++|+|++.|+++++++
T Consensus 1438 rIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1438 KILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=353.20 Aligned_cols=211 Identities=25% Similarity=0.372 Sum_probs=177.0
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++++|++|+++. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 46999999999841 2359999999999999999999999999999999999876 468999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1445)
+.+ ..+++.+|||+|++.+++ -|++||+.++. .++.+. +.++++++..++.+. .|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~----~~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGA----KENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccC----CCCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 643 457788999999998876 59999998752 122332 235667777776543 35666654
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 3689999999999999999999999999999999999999999999985 4799999999986 5678999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 899999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=353.49 Aligned_cols=218 Identities=26% Similarity=0.331 Sum_probs=183.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++++. ++.+|+|+|++|++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67888887763 2469999999999999999999999999999999999876 45899999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 927 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 927 ~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ..++.+||++|++.+++.+||+|++.++...+.. ...+....++.++++++.++|.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245699999999889999999999886432211 11223334456889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+.|.|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999986 57788999999985 799999
Q ss_pred cCCCC
Q 000523 1082 GPLGR 1086 (1445)
Q Consensus 1082 G~~~~ 1086 (1445)
|+..+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 98754
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.63 Aligned_cols=210 Identities=20% Similarity=0.326 Sum_probs=165.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCCCcC-----ccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 4899999999999999999999999999999999998751 013899999999875321 245699999998777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ +|++||+.|.....+.... .+....++.+++.+||.+...... +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14270 98 P-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL-K 142 (251)
T ss_pred C-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 6 8999999986543221000 001123455677887742111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
...+.||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.. + .+|+.++|+..++.+.+|++++|
T Consensus 143 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 45566778888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 220 LMGDLIEFNKTEKIF 234 (251)
T ss_pred ECCeEEEeCCHHHHh
Confidence 999999999998864
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=320.15 Aligned_cols=214 Identities=21% Similarity=0.278 Sum_probs=174.6
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC--eEEEEEEEcC
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISG 922 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~--~~~G~i~i~g 922 (1445)
..++++|+++.++ +.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3578899987752 24899999999999999999999999999999999987531 1689999999
Q ss_pred ccCCcccc-cceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCC
Q 000523 923 YPKKQETF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSLVGLPGV 996 (1445)
Q Consensus 923 ~~~~~~~~-~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~vg~~~~ 996 (1445)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .++.++++++.+++.+. .+.. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87653322 356999999974 4566899998876443221 111 22457889999999762 3333 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 679999999999999999999999999999999999999999999998764 899999999986 47788999999985
Q ss_pred cEEEEEcCC
Q 000523 1076 GQEIYVGPL 1084 (1445)
Q Consensus 1076 G~~~y~G~~ 1084 (1445)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 799999885
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=314.13 Aligned_cols=211 Identities=23% Similarity=0.339 Sum_probs=174.8
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+... .+.+.+|+|+|+++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5677777765310 112579999999999999999999999999999999999875 46899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000523 927 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1000 (1445)
.. ..++.++|++|++.+++..|+.||+.+...... ....++..+.++++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 21 245679999999988888999999998654321 123344455688999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|++ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 5899999999985 4688999999985 553
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=319.18 Aligned_cols=208 Identities=19% Similarity=0.277 Sum_probs=166.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (1445)
.+|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|+++|+++.+... ++.++|++|++.+++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 48999999999999999999999999999999999975 45 8999999998865422 457999999887776
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.||+||+.++.+.++.... .......++.+++.+||........ ++
T Consensus 93 -~tv~eni~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 138 (246)
T PRK14269 93 -KSIYENISYAPKLHGMIKN--------------------------------KDEEEALVVDCLQKVGLFEEVKDKL-KQ 138 (246)
T ss_pred -ccHHHHhhhHHhhcCcccC--------------------------------hHHHHHHHHHHHHHcCCChhhhHHh-cC
Confidence 6999999886533211000 0001123566788888853211111 23
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..+.|||||||||+|||+|+.+|++++|||||+|||..++..+.+.|+++. . +++++.++|+..++.+.+|++++|+
T Consensus 139 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~l~ 215 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--H-NLSMIMVTHNMQQGKRVADYTAFFH 215 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEecCHHHHHhhCcEEEEEE
Confidence 456799999999999999999999999999999999999999999999864 3 4556667888899999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (246)
T PRK14269 216 LGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=321.19 Aligned_cols=215 Identities=24% Similarity=0.257 Sum_probs=174.8
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc-
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 924 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 924 (1445)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 378888887763 2359999999999999999999999999999999999875 458999999986
Q ss_pred ----CCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000523 925 ----KKQE---T----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 990 (1445)
Q Consensus 925 ----~~~~---~----~~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 990 (1445)
+... . .++.++|++|++. +.+.+|+.|++.+...... .......++.++++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 5677899999876432211 1122234456788999999963 44443
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceE
Q 000523 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1069 (1445)
Q Consensus 991 vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v 1069 (1445)
+..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4679999999999999999999999999999999999999999999998764 899999999986 466789999
Q ss_pred eEEecCcEEEEEcCC
Q 000523 1070 FLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1070 ~~l~~gG~~~y~G~~ 1084 (1445)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 799999875
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=325.09 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=179.6
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-+.++|+++.+... .+..+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 37788988876410 12359999999999999999999999999999999999876 4689999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 566789999998764322 123334445688999999998877665 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999864 4 46999999986 78999
Q ss_pred EcCC
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~G~~ 1084 (1445)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8885
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=321.07 Aligned_cols=206 Identities=25% Similarity=0.383 Sum_probs=167.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCcc-----CCCcCc-------cceEEEEcC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~Q 233 (1445)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 4899999999999999999999999999999999999998 9999999987 654322 246999999
Q ss_pred CCC--CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcc-
Q 000523 234 HDN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1445)
Q Consensus 234 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1445)
++. +.+.+|+.||+.+.....+.. .. .+....++++++.+|+..
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--------------------------------~~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGAR-HY--------------------------------GDIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccC-cH--------------------------------HHHHHHHHHHHHHcCCChh
Confidence 863 577789999997643211000 00 001123567788999963
Q ss_pred cccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHh
Q 000523 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1445)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1445)
..++. +..|||||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++.. ..+.+|+.++|+..++.+
T Consensus 144 ~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHH
Confidence 44443 456999999999999999999999999999999999999999999998754 335566668889999999
Q ss_pred hcCeEEEecCCeEEEecChhHHH
Q 000523 391 LFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 391 ~~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
.+|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=319.03 Aligned_cols=211 Identities=21% Similarity=0.307 Sum_probs=167.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|++|++||+++|+|||||||||||++|+|.++ |+...+|+|.++|+++... ..++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 49999999999999999999999999999999999986 3111289999999987532 1246799999998889
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.+||+||+.++.+..+.... .+....++++++.+|+........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNR---------------------------------SEADEIVESSLKRVALWDEVKDRL-K 143 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 999999999876432110000 001123566778888754211111 1
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
..++.||||||||++||++|+.+|++++|||||+|||..++.++.+.|+++.. + ++|+.++|+..++.+.||++++|
T Consensus 144 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 3 45666788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 221 YMGDLVECGETKKIF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=313.06 Aligned_cols=224 Identities=23% Similarity=0.318 Sum_probs=180.7
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC-C--CeEEEEEEEcCc
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYITGNITISGY 923 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~-~--~~~~G~i~i~g~ 923 (1445)
++++|++.++.... +...+++||||++++||++||+|.|||||||+.++|.|..+ + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 45677776664321 23579999999999999999999999999999999999765 2 356789999998
Q ss_pred cCC---cc---c-ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000523 924 PKK---QE---T-FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994 (1445)
Q Consensus 924 ~~~---~~---~-~~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 994 (1445)
++- ++ . ..+.+++++|++. +.|.+||.+.+.=......... .+++.++++.++++.+++.+-...+-.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~-- 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKS-- 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhh--
Confidence 643 22 1 2357999999965 6788999887765444322111 344556678899999999864332222
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
.+..|||||||||.||.||+.+|++|+.||||++||...+++|+++|+++.+ .|.|+|++|||... +.+.+|||.||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE
Confidence 2578999999999999999999999999999999999999999999999986 69999999999974 889999999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
. |++|..||.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 899999996
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=319.33 Aligned_cols=205 Identities=23% Similarity=0.283 Sum_probs=165.6
Q ss_pred eeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC----CCCceeEEEEcCccCCCcCcc-ceEEEEcCCCC--CCC
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDN--HIG 239 (1445)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~--~~~ 239 (1445)
+|+|+|+++++||+++|+||||||||||+++|+|.++| + +|+|.++|++++..... +.++||+|++. +.+
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 89999999999999999999999999999999999998 6 99999999987543332 57999999864 446
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
..|+.+++.+.++..+... ....++++++.+||.+.. +.. +.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~-~~~-~~ 136 (254)
T PRK10418 95 LHTMHTHARETCLALGKPA------------------------------------DDATLTAALEAVGLENAA-RVL-KL 136 (254)
T ss_pred cccHHHHHHHHHHHcCCCh------------------------------------HHHHHHHHHHHcCCCChh-hhh-hc
Confidence 6799999876432211100 012356678889987521 111 23
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
..+.|||||||||+|||+|+.+|++|+|||||+|||..++..+.+.|+++++. .+++|+.++|+..++.+.+|++++|+
T Consensus 137 ~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~ 215 (254)
T PRK10418 137 YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMS 215 (254)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEE
Confidence 44569999999999999999999999999999999999999999999987653 34566667888888899999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (254)
T PRK10418 216 HGRIVEQGDVETLF 229 (254)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=319.01 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=174.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.++++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 367888887763 235999999999999999999999999999999999976532 2369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.+... ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 87532 1345679999999988875 999999987543321 11222334567788888875321111111 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999986 57788999999985 78
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9999885
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=319.36 Aligned_cols=219 Identities=24% Similarity=0.252 Sum_probs=175.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 477888887763 246999999999999999999999999999999999975321 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. ......++.++++++.+++.+......+. .+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHD-SAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhc-Chh
Confidence 87642 2335679999999988874 999999987554321 12233345678888888875321111111 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 689999999986 47788999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9998885
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=319.49 Aligned_cols=218 Identities=19% Similarity=0.218 Sum_probs=176.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 922 (1445)
.+..+.+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 8 ~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 8 VMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred eEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 456666665542 356999999999999999999999999999999999986431 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . ....++.++++++.+++.+..+...+. ..+
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~~ 148 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SGL 148 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87532 23456799999998777 5999999998765432 1 122345678899999986533222222 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe----
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK---- 1073 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~---- 1073 (1445)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~ 226 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDIS 226 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 799999999999999999999999999999999999999999999985 4799999999986 5778899999996
Q ss_pred ---cCcEEEEEcCC
Q 000523 1074 ---RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ---~gG~~~y~G~~ 1084 (1445)
++|+++..|+.
T Consensus 227 ~~~~~G~i~~~g~~ 240 (261)
T PRK14263 227 QGTRTGYLVEMGPT 240 (261)
T ss_pred cccCCceEEEeCCH
Confidence 46899999985
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=353.92 Aligned_cols=218 Identities=25% Similarity=0.302 Sum_probs=182.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|+++++. ++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 377888887763 2469999999999999999999999999999999999875 4589999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 926 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLR----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 926 ~~~----~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
... ..++.+||++|++.+++.+||+|++.++.... .....+..+.++.++++++.++|.+..+..+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12346999999998899999999998753211 0000122334456889999999987777663 5
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999986 57788999999985 79
Q ss_pred EEEEcCCC
Q 000523 1078 EIYVGPLG 1085 (1445)
Q Consensus 1078 ~~y~G~~~ 1085 (1445)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 99999874
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=351.66 Aligned_cols=122 Identities=24% Similarity=0.311 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCC---CEEEE
Q 000523 947 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 1022 (1445)
Q Consensus 947 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p---~illL 1022 (1445)
+||.|++.|...+. . .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78888888764432 1 1123578899999753 3443 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe-----cCcEEEEEcCC
Q 000523 1023 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1084 (1445)
Q Consensus 1023 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~-----~gG~~~y~G~~ 1084 (1445)
||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999888999999999985 346799999994 57999999985
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=360.82 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=108.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHh---hCCC
Q 000523 943 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1018 (1445)
Q Consensus 943 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~~L~---~~p~ 1018 (1445)
.+...||.|+|.++..-..+...+.++..+.+ ++++.+||.+. .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45568999999887653221111223344455 57888999775 4554 3579999999999999998 5999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe-----cCcEEEEEcCC
Q 000523 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1084 (1445)
Q Consensus 1019 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~-----~gG~~~y~G~~ 1084 (1445)
+++|||||+|||+.+...+++.|+++.+.|.|||+++|++.. + +.+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 999999999999999999999999998889999999999863 4 8999999995 36899999986
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=319.04 Aligned_cols=210 Identities=21% Similarity=0.348 Sum_probs=164.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 48999999999999999999999999999999999854 5212389999999887431 1245799999988777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ +||+||+.++....+.... + .....++++++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-Q--------------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 8999999886533221000 0 01123455677777643211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+.++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ + .+|+.++|+..++.+.+|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998742 3 45666788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998774
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=320.52 Aligned_cols=210 Identities=19% Similarity=0.305 Sum_probs=165.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|++|++||+++|+|||||||||||++|+|.++| +...+|+|+++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 489999999999999999999999999999999999873 212389999999987531 1235799999998777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+. ||+||+.|..+..+.... .+....++.+++.+|+.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 999999886433211000 001123456677788753211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+++.++|+..++.+.+|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--EK-YTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEEcCHHHHHHhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 33 45566778888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=362.76 Aligned_cols=210 Identities=24% Similarity=0.401 Sum_probs=175.8
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++++|+++.+. +++.+|+|+|++|+|||++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999986542 1236999999999999999999999999999999999987 4 48999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1445)
+.+ ..+++.++||+|++.++. -|++||+.++. ++.+. +.++++++..++.+. .|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 456788999999998876 59999998852 23333 335667777766543 36677765
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
| .+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 4 5799999999999999999999999999999999999999999999885 5899999999985 5677999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 799998874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=323.68 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=174.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC--C-CeEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1445)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|||||||||||++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578899988763 2359999999999999999999999999999999999642 1 12589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1445)
.++.. ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999888774 999999986543211 122233455778888888742 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 799999885
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=315.77 Aligned_cols=200 Identities=29% Similarity=0.459 Sum_probs=160.2
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCC--CCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMT 242 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1445)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 35999999999999999999999999999999999999998 9999999987642 346799999987653 4489
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
|+||+.++..... . ..... ..+....++++++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~-~-~~~~~----------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHK-G-LFRRL----------------------------SKADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhcccccc-c-cccCC----------------------------CHHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 9999987542110 0 00000 0001224567888999986666544 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.+++|++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999998764 3 455666888888999999999999886
Q ss_pred EEEec
Q 000523 403 IVYQG 407 (1445)
Q Consensus 403 iv~~G 407 (1445)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=321.35 Aligned_cols=219 Identities=23% Similarity=0.285 Sum_probs=178.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC---CeEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1445)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 478899988874 24699999999999999999999999999999999997652 14689999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000523 923 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 998 (1445)
Q Consensus 923 ~~~~~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1445)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....++.++.+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234567999999988887 899999987643221 12333344456788899998653222111 12467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57888999999985 799
Q ss_pred EEEcCC
Q 000523 1079 IYVGPL 1084 (1445)
Q Consensus 1079 ~y~G~~ 1084 (1445)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=322.00 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=174.3
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC--C-CeEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1445)
-+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478899988763 2369999999999999999999999999999999999642 1 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1445)
.+... ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1345679999999888774 99999987643221 1112223455778888888852 22322
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 799999875
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=311.18 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=171.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-+.++|+++++. ++.+|+++|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478889887653 2359999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1005 (1445)
.....++.++|++|++.+++.+|+.|++.+....+. .. ..+.++++++.++|.+..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCC-----hhhCCHHHHH
Confidence 543344568999999988888999999988654321 11 223467889999998776665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 1006 Rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 5889999999986
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=318.11 Aligned_cols=210 Identities=21% Similarity=0.344 Sum_probs=165.5
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 4899999999999999999999999999999999998741 01289999999887532 1245799999988777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ +||+||+.++....+.... ...+..+++.++.+|+....+.. .+
T Consensus 97 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14262 97 P-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKSE-LN 141 (250)
T ss_pred c-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHHH-Hh
Confidence 6 8999999886532211000 00112245567777775321111 23
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+.++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++. .+ ++++.++|+..++.+.+|++++|
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS--EN-YTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh--cC-cEEEEEeCCHHHHHHhCCEEEEE
Confidence 4556799999999999999999999999999999999999999999999874 23 45666788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|+++..|+.+++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 219 YRGELIEYGPTREIV 233 (250)
T ss_pred ECCEEEEecCHHHHH
Confidence 999999999988764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=317.85 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=174.5
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC--C-eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 922 (1445)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 377888888763 24699999999999999999999999999999999997641 1 3589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1445)
.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 124567999999988776 7999999876433211 122233455788899998852 22222
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 467999999999999999999999999999999999999999999999854 789999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 789988875
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=316.99 Aligned_cols=219 Identities=24% Similarity=0.306 Sum_probs=173.1
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC--CC-eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 922 (1445)
-+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 367888887763 2469999999999999999999999999999999999743 11 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.......... .+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHE-SAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhc-Ccc
Confidence 87631 234567999999988887 6999999886543321 11222234566778888764211111111 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. .+.+.+|++++|++ |+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 57788999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.79 Aligned_cols=206 Identities=21% Similarity=0.313 Sum_probs=162.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 235 (1445)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 48999999999999999999999999999999999987 45 99999999886421 1235699999998
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
.+++ .||+||+.+++...+.. + + ....++.+++.+++....+..
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~---~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYT---G---D-----------------------------MDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCc---H---H-----------------------------HHHHHHHHHHHhCCcchhhhh
Confidence 7777 59999999875432210 0 0 011234456666653211111
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
-+..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.++||++
T Consensus 148 -~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 148 -LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK--KN-FTIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred -hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEE
Confidence 123455799999999999999999999999999999999999999999999874 23 55666888889999999999
Q ss_pred EEecC-----------CeEEEecChhHHHH
Q 000523 396 ILLSD-----------GQIVYQGPRELVLE 414 (1445)
Q Consensus 396 ilL~~-----------G~iv~~G~~~~~~~ 414 (1445)
++|++ |++++.|+.+++.+
T Consensus 224 ~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 224 AFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEeccccccccccccceEEEeCCHHHHHh
Confidence 99996 67899999988753
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=322.64 Aligned_cols=218 Identities=22% Similarity=0.396 Sum_probs=174.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|+++.+. +++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 578889887763 12469999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEeccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000523 926 KQETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1002 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~--~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1002 (1445)
.....++.++|++|++.+. ...+++|++.++...... ........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997642 234788888654211000 01111223445778999999988777653 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1003 qrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577889999766 4 7999999
Q ss_pred CCC
Q 000523 1083 PLG 1085 (1445)
Q Consensus 1083 ~~~ 1085 (1445)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=309.91 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=164.1
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 45677776653 2469999999999999999999999999999999999876 45899999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000523 927 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 927 ~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1004 (1445)
. ..+++.++|++|++.+++.+|+.|++.+....+. . ..++.++++++.++|.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999988899999999988654321 1 1234578899999998776665 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEE
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1445)
Q Consensus 1005 qRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l 1072 (1445)
||++||++|+++|++++|||||+|||+.++..+++.|+++.++|+|||+++|+++ .+-..-+|++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999986 344433455544
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=361.52 Aligned_cols=259 Identities=24% Similarity=0.387 Sum_probs=190.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCC-cceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1445)
.++.+...+|+.+.++.+++. ....+....+.+ ...++++||++.++..
T Consensus 301 ~~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------------------- 350 (576)
T TIGR02204 301 LQRAAGAAERLIELLQAEPDI-----KAPAHPKTLPVPLRGEIEFEQVNFAYPAR------------------------- 350 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCcC-----CCCCCCccCCcCCCceEEEEEEEEECCCC-------------------------
Confidence 456777888888777654330 000000011112 2359999999997420
Q ss_pred hcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 000523 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1445)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 233 (1445)
..+.+|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++..+ ++.++||+|
T Consensus 351 ------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 351 ------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred ------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 1134999999999999999999999999999999999999998 9999999999877654 367999999
Q ss_pred CCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
++. +++.|++|||.++... ...+.+.++++. .+ ..+.++ .+++..|
T Consensus 422 ~~~-lf~~Ti~~Ni~~~~~~----~~~~~~~~~l~~---~~------------------------l~~~i~--~l~~gl~ 467 (576)
T TIGR02204 422 DPV-LFAASVMENIRYGRPD----ATDEEVEAAARA---AH------------------------AHEFIS--ALPEGYD 467 (576)
T ss_pred CCc-cccccHHHHHhcCCCC----CCHHHHHHHHHH---cC------------------------cHHHHH--hCCCCCC
Confidence 765 5567999999875311 111111111111 00 111222 2566778
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
|.+|+.+ ..||||||||+++||+++++|++++||||||+||..++..+.+.|+++. .++|+|+ ++|.. +....+|
T Consensus 468 t~i~~~g-~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~Ii-itH~~-~~~~~~d 542 (576)
T TIGR02204 468 TYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLI-IAHRL-ATVLKAD 542 (576)
T ss_pred ceeCCCC-CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCC
Confidence 9998764 4699999999999999999999999999999999999999999999863 3445554 55554 5567899
Q ss_pred eEEEecCCeEEEecChhHHHH
Q 000523 394 DIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1445)
+|++|++|+++..|+++++.+
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred EEEEEECCEEEeeecHHHHHH
Confidence 999999999999999988754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=316.78 Aligned_cols=210 Identities=22% Similarity=0.355 Sum_probs=163.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 489999999999999999999999999999999998763 111389999999987531 1245799999988777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ +||+||+.++....+.... + +....++++++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-K--------------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999986543221000 0 01123445566676642211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+.+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+.+|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KD-YTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEEeCHHHHHhhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999873 34 45566788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=309.19 Aligned_cols=184 Identities=27% Similarity=0.337 Sum_probs=159.0
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCH
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 469999999999999999999999999999999999876 458999999987532 2345679999999888889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgL 1029 (1445)
+|++.+.... . .++.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999875311 1 134578899999998776665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEE
Q 000523 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1445)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l 1072 (1445)
|+.++..+++.|+++.++|+|+|+++|++. ++.+.+|+++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998777999999999986 577788998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=320.18 Aligned_cols=212 Identities=28% Similarity=0.387 Sum_probs=168.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-----CCceeEEEEcCccCCCcCc---cceEEEEcCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNH 237 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~ 237 (1445)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++..
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 4999999999999999999999999999999999999874 1137999999998754332 3468999998776
Q ss_pred CCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccc
Q 000523 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1445)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1445)
++.+||+||+.++...... .... .+ .+....++.+++.+||++..++.
T Consensus 95 ~~~~tv~e~l~~~~~~~~~--~~~~-------------~~---------------~~~~~~~~~~l~~~~l~~~~~~~-- 142 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHAR--RAGA-------------LT---------------HRDGEIAWQALALAGATALVGRD-- 142 (272)
T ss_pred CCCCcHHHHHhhccccccc--cccc-------------CC---------------HHHHHHHHHHHHHcCcHhhhcCC--
Confidence 7779999999875311000 0000 00 00112456788899998655544
Q ss_pred ccccccCChhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 000523 318 DEMIRGISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1445)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~aL~---------~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~ 388 (1445)
+..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+..++
T Consensus 143 ---~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tviiisH~~~~~ 218 (272)
T PRK13547 143 ---VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR-DWNLGVLAIVHDPNLA 218 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHH
Confidence 4469999999999999999 59999999999999999999999999998764 3245566678888889
Q ss_pred HhhcCeEEEecCCeEEEecChhHHH
Q 000523 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 389 ~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
.+++|++++|++|++++.|+.+++.
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 219 ARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHc
Confidence 8999999999999999999988763
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=349.43 Aligned_cols=220 Identities=22% Similarity=0.337 Sum_probs=180.8
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 45678877663 24699999999999999999999999999999999998753235899999998764
Q ss_pred ccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCC
Q 000523 927 QET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~~~----~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LS 1000 (1445)
... .++.+||++|++.+++.+||.|++.+....+... ....+..++.++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 311 2356999999998889999999998864332111 122333455688999999997654 333 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1001 gGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. .+.+.+|++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 57788999999986 78999
Q ss_pred EcCCCC
Q 000523 1081 VGPLGR 1086 (1445)
Q Consensus 1081 ~G~~~~ 1086 (1445)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 988753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=318.43 Aligned_cols=207 Identities=18% Similarity=0.270 Sum_probs=162.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCceeEEEEcCccCCCcC-----ccceEEEEcCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d 235 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|..+ |+ +|+|.++|+++.... .++.++|++|++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 49999999999999999999999999999999999864 46 899999999875321 235799999998
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
.+++. ||+||+.++.+..+... . . ..+..++..++.+++.......
T Consensus 112 ~~~~~-tv~enl~~~~~~~~~~~--~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAGERR--K---S----------------------------VLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCc--H---H----------------------------HHHHHHHHHHHHcCCCcchHHH
Confidence 77774 99999987643211000 0 0 0011234456677764211111
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
-++.+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. + ++|+.++|+..++.+.+|+|
T Consensus 158 -~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 -LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred -HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEE
Confidence 1234557999999999999999999999999999999999999999999998742 3 45666788888899999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|++|++++.|+.+++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=319.36 Aligned_cols=224 Identities=25% Similarity=0.334 Sum_probs=178.5
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
+.++|+++.+.... ..|. ..++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 66788887763100 0000 013569999999999999999999999999999999999865 46899999998754
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000523 927 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 997 (1445)
Q Consensus 927 ~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 997 (1445)
.. ..++.++|++|+. .+.+..|+.|++.+...... ..........++++++.+++. +..+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 21 2356799999997 35677999999876532111 123334455688999999996 455554 45
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 57778999999985 7
Q ss_pred EEEEEcCCC
Q 000523 1077 QEIYVGPLG 1085 (1445)
Q Consensus 1077 ~~~y~G~~~ 1085 (1445)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 999999864
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=319.02 Aligned_cols=219 Identities=19% Similarity=0.224 Sum_probs=174.6
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITIS 921 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~ 921 (1445)
.-+.++|+++.+. ++.+|+|+|+.|++||+++|+|+||||||||+++|+|..... +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3588999988763 246999999999999999999999999999999999975321 247999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000523 922 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 996 (1445)
Q Consensus 922 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 996 (1445)
|.++.. ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.++++++.+++.......... .+
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~ 159 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKE-KG 159 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcC-Cc
Confidence 987532 2345679999999887764 99999987643321 11 12234466778888874221111111 14
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe---
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK--- 1073 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~--- 1073 (1445)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~ 237 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEI 237 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 67999999999999999999999999999999999999999999999865 789999999986 5888999999997
Q ss_pred -----cCcEEEEEcCC
Q 000523 1074 -----RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 -----~gG~~~y~G~~ 1084 (1445)
+.|++++.|+.
T Consensus 238 ~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 238 DEYGKRRGKLVEFSPT 253 (274)
T ss_pred ccccccCceEEEeCCH
Confidence 25899999996
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=311.02 Aligned_cols=192 Identities=27% Similarity=0.352 Sum_probs=159.6
Q ss_pred CceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000523 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 949 (1445)
Q Consensus 870 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv 949 (1445)
+++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 34679999999999999999999999999999999999876 468999999976421 1112334567999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000523 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029 (1445)
Q Consensus 950 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgL 1029 (1445)
+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999988654321 223344456788999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEc
Q 000523 1030 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1082 (1445)
Q Consensus 1030 D~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G 1082 (1445)
|+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999986 57778999999985 7887765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=317.53 Aligned_cols=205 Identities=27% Similarity=0.426 Sum_probs=158.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++ ..|
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~t 91 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRS 91 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cch
Confidence 4899999999999999999999999999999999999998 9999999988754322 35799999987665 579
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHc--CCcccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (1445)
|+||+.+... . ...+...+..+ . ...+..++.+ |++...+ +.
T Consensus 92 v~~nl~~~~~--~--~~~~~~~~~~~---~------------------------~~~~~~l~~l~~~~~~~~~-----~~ 135 (237)
T cd03252 92 IRDNIALADP--G--MSMERVIEAAK---L------------------------AGAHDFISELPEGYDTIVG-----EQ 135 (237)
T ss_pred HHHHhhccCC--C--CCHHHHHHHHH---H------------------------cCcHHHHHhCcccccchhh-----cC
Confidence 9999987431 1 01111111000 0 0112334444 4433222 34
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000523 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 321 ~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~ 400 (1445)
+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+. +|+.++|+..++ ..+|++++|++
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~-tiii~sH~~~~~-~~~d~v~~l~~ 211 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGR-TVIIIAHRLSTV-KNADRIIVMEK 211 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCC-EEEEEeCCHHHH-HhCCEEEEEEC
Confidence 55799999999999999999999999999999999999999999999874 344 455567777777 46999999999
Q ss_pred CeEEEecChhHHHH
Q 000523 401 GQIVYQGPRELVLE 414 (1445)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1445)
|++++.|+.+++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (237)
T cd03252 212 GRIVEQGSHDELLA 225 (237)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=281.12 Aligned_cols=201 Identities=28% Similarity=0.403 Sum_probs=170.9
Q ss_pred ccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcC
Q 000523 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQ 233 (1445)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q 233 (1445)
...+.+||++|++.|++||.++|+|||||||||||-+|+|+-+|+ +|+|.+.|+++..+.. .+.+|+|+|
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 445678999999999999999999999999999999999999999 9999999999876542 368999999
Q ss_pred CCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccc
Q 000523 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1445)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1445)
...++|+||..||+.....++|-+.+ +....+...|+.+||.+..+
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~ 141 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRLT 141 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCcccccc
Confidence 99999999999999998877653211 01123456788999988766
Q ss_pred ccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000523 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1445)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D 393 (1445)
.+ +.+|||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.+ ..+++++.++|+ +....-||
T Consensus 142 Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-e~G~TlVlVTHD-~~LA~Rc~ 214 (228)
T COG4181 142 HY-----PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHD-PQLAARCD 214 (228)
T ss_pred cC-----ccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh-hcCceEEEEeCC-HHHHHhhh
Confidence 44 456999999999999999999999999999999999999999999987765 456666667776 46677899
Q ss_pred eEEEecCCeEEE
Q 000523 394 DIILLSDGQIVY 405 (1445)
Q Consensus 394 ~iilL~~G~iv~ 405 (1445)
|++-|.+|+++.
T Consensus 215 R~~r~~~G~l~~ 226 (228)
T COG4181 215 RQLRLRSGRLVE 226 (228)
T ss_pred heeeeecceecc
Confidence 999999999974
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=320.58 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=173.8
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC---CeEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 922 (1445)
.++++|+++.+. ++.+|+|+|+.|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899988763 24699999999999999999999999999999999998642 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 993 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 993 (1445)
.+... ...++.++|++|++.+++. ||.||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999887775 99999988654332 112 23456788999998853 22332
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEe-EE
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-LM 1072 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~-~l 1072 (1445)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 467999999999999999999999999999999999999999999999976 489999999986 5777899976 45
Q ss_pred ecCcEEEEEcCC
Q 000523 1073 KRGGQEIYVGPL 1084 (1445)
Q Consensus 1073 ~~gG~~~y~G~~ 1084 (1445)
+ .|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 4899998875
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=349.85 Aligned_cols=211 Identities=21% Similarity=0.308 Sum_probs=180.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|+++.++ ++.+|+|+|++|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 378899988773 2369999999999999999999999999999999999875 4589999999875
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~~---~-~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
... . .++.+||++|++.+++.+||+|++.+... . ....++.++++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 431 1 12458999999999999999999987531 1 1223456789999999987777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999986 47788999999986 799999
Q ss_pred cCCC
Q 000523 1082 GPLG 1085 (1445)
Q Consensus 1082 G~~~ 1085 (1445)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 9864
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=316.14 Aligned_cols=207 Identities=23% Similarity=0.330 Sum_probs=164.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 49999999999999999999999999999999999987631 1379999999887531 1235799999999889
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc----ccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1445)
+.+|+.||+.++....+... .+. ....++..++.+++. +..+
T Consensus 98 ~~~t~~enl~~~~~~~~~~~-~~~--------------------------------~~~~~~~~l~~~~l~~~l~~~~~- 143 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRD-RDH--------------------------------LMEVAERSLRGAALWDEVKDRLK- 143 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCC-HHH--------------------------------HHHHHHHHHHHcCcchhhhhhhc-
Confidence 99999999987643221100 000 011233344555543 2223
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
..++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++. .+ ++++.++|+..++.+.+|+
T Consensus 144 ----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~ 216 (252)
T PRK14272 144 ----TPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK--KV-TTIIIVTHNMHQAARVSDT 216 (252)
T ss_pred ----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCE
Confidence 3345699999999999999999999999999999999999999999999874 33 5566678888899999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000523 395 IILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1445)
+++|++|++++.|+++++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 217 TSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=318.95 Aligned_cols=210 Identities=25% Similarity=0.330 Sum_probs=167.1
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCCCcC----ccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~~ 239 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++.+.. .++.++|++|++.+++
T Consensus 35 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~ 114 (276)
T PRK14271 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP 114 (276)
T ss_pred EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence 4899999999999999999999999999999999999851 012899999998875431 2467999999887777
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
+||+||+.++...... ... .+....+..+++.+||.+..++.. ++
T Consensus 115 -~tv~eni~~~~~~~~~-~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~~ 159 (276)
T PRK14271 115 -MSIMDNVLAGVRAHKL-VPR--------------------------------KEFRGVAQARLTEVGLWDAVKDRL-SD 159 (276)
T ss_pred -ccHHHHHHHHHHhccC-CCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-hC
Confidence 8999999876432110 000 001123455677888865332222 23
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
.++.||||||||++|||+|+.+|++++|||||+|||..++..+.+.|+++.. + .+|+.++|+..++.+.+|++++|+
T Consensus 160 ~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4567999999999999999999999999999999999999999999998743 3 566667888899999999999999
Q ss_pred CCeEEEecChhHHH
Q 000523 400 DGQIVYQGPRELVL 413 (1445)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1445)
+|++++.|+.+++.
T Consensus 237 ~G~i~~~g~~~~~~ 250 (276)
T PRK14271 237 DGRLVEEGPTEQLF 250 (276)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999998874
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=348.38 Aligned_cols=213 Identities=27% Similarity=0.411 Sum_probs=177.4
Q ss_pred CceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCc
Q 000523 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 923 (1445)
Q Consensus 844 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1445)
+..++++|++|+++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 346999999998852 12459999999999999999999999999999999999876 45899999999
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 000523 924 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 993 (1445)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~ 993 (1445)
++++ ..+++.++||+|++.+++ .|++||+.++. ++.+. +.++++++..++.+. .|+.+|.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8654 456788999999988776 69999997631 22222 235566777666543 3556665
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
. ..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|+
T Consensus 590 ~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 K-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 4 46899999999999999999999999999999999999999999999984 5899999999986 456799999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |+++..|+.
T Consensus 666 ~-G~i~~~g~~ 675 (694)
T TIGR01846 666 K-GQIAESGRH 675 (694)
T ss_pred C-CEEEEeCCH
Confidence 6 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=303.99 Aligned_cols=170 Identities=41% Similarity=0.673 Sum_probs=147.6
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1445)
.++|+|+|+++++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 35999999999999999999999999999999999999 888 9999999998765334567999999988889999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999763210 0
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCc-hhHHhhcCeEEEecCC
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-PETYDLFDDIILLSDG 401 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~-~~~~~~~D~iilL~~G 401 (1445)
.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.. .+.|+|+ ++|+. .++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999998754 3445555 55655 4788899999999999
Q ss_pred eEEEec
Q 000523 402 QIVYQG 407 (1445)
Q Consensus 402 ~iv~~G 407 (1445)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=319.42 Aligned_cols=218 Identities=22% Similarity=0.232 Sum_probs=173.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCC--C-CeEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 922 (1445)
-+.++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 488999988763 1358999999999999999999999999999999999754 1 13689999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000523 923 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 996 (1445)
Q Consensus 923 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 996 (1445)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.++++.+++.. +.+.+ .. .+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~-~~ 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HD-NA 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hc-Cc
Confidence 87632 234567999999988877 599999988654321 1112222345667777775432 21111 11 24
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|++ |
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G 242 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-G 242 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999865 799999999986 47788999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
++++.|+.
T Consensus 243 ~i~~~g~~ 250 (271)
T PRK14238 243 YVNEYDDT 250 (271)
T ss_pred EEEEeCCH
Confidence 99999875
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.83 Aligned_cols=209 Identities=28% Similarity=0.427 Sum_probs=161.3
Q ss_pred EEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc
Q 000523 848 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 927 (1445)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 927 (1445)
+++|+++.++. .++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 46677766531 12358999999999999999999999999999999999875 458999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCC
Q 000523 928 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPGVS 997 (1445)
Q Consensus 928 ---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~~~ 997 (1445)
..+++.++|++|++.+++ .||.||+.+... ..... .+.+.++..++.+..+.+ .. ..+.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSME----RVIEAAKLAGAHDFISELPEGYDTIVG-EQGA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhh-cCCC
Confidence 234567999999987764 699999976421 11111 122233333332221111 11 1246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++.. + +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999864 8999999999863 4 56999999985 79
Q ss_pred EEEEcCC
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~~y~G~~ 1084 (1445)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9999885
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=318.66 Aligned_cols=210 Identities=21% Similarity=0.319 Sum_probs=164.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998740 01289999999987531 1246799999988777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+. ||+||+.+.....+.... + .....++++++.+++.....+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINNR-R--------------------------------VLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCcH-H--------------------------------HHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 999999886543221000 0 00122455677777753211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+..+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+..++.+.+|++++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--K-YTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEeCCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 45566788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 241 ~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 241 YMGKLVEYGDTDTLF 255 (272)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988763
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=358.80 Aligned_cols=226 Identities=25% Similarity=0.385 Sum_probs=169.6
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhh--cCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDR--VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1445)
.++.+...+|+.++++.+++ ..+.... ........+++|+||++.++.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~------------------------- 346 (529)
T TIGR02868 297 LTRVRAAAERIEEVTGAKGP-----RPEGVVPAAGALGLGKPTLELRDLSFGYPG------------------------- 346 (529)
T ss_pred HHHHHHHHHHHHHHhcCCCC-----cCCCCCCCCcccCCCCceEEEEEEEEecCC-------------------------
Confidence 56778888999888876554 1110000 001112357999999999832
Q ss_pred hhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEc
Q 000523 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1445)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~ 232 (1445)
+ .++|+|+|++++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++++. . ++.++||+
T Consensus 347 -----~---~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr~~i~~V~ 414 (529)
T TIGR02868 347 -----S---PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELRRRISVFA 414 (529)
T ss_pred -----C---CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHHhheEEEc
Confidence 1 13899999999999999999999999999999999999999 99999999998877 5 36899999
Q ss_pred CCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccc
Q 000523 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1445)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1445)
|++.+| +.||+|||.++.. ....+.+.++++.. + .++. +-.|+++.
T Consensus 415 Q~~~lF-~~TI~eNI~~g~~----~~~~e~i~~al~~a---~------------------------l~~~--i~~lp~Gl 460 (529)
T TIGR02868 415 QDAHLF-DTTVRDNLRLGRP----DATDEELWAALERV---G------------------------LADW--LRSLPDGL 460 (529)
T ss_pred cCcccc-cccHHHHHhccCC----CCCHHHHHHHHHHc---C------------------------CHHH--HHhCcccc
Confidence 977555 5699999998631 11122222222111 0 0111 23478889
Q ss_pred cccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 000523 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1445)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q 383 (1445)
||.||+++. .||||||||++||||++++|++|+||||||+||+.++..|.+.|++.. .++|+|+ ++|
T Consensus 461 dT~ige~G~-~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIi-ItH 527 (529)
T TIGR02868 461 DTVLGEGGA-RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVV-ITH 527 (529)
T ss_pred cchhccccC-cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEE-Eec
Confidence 999998765 599999999999999999999999999999999999999999998742 3455555 444
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=389.52 Aligned_cols=257 Identities=17% Similarity=0.223 Sum_probs=195.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCC--C-CCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhh
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI--D-LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1445)
.+....++||+.+..+.++|. ....+.... . .+..+|+|+||++.|...
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~-----~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~----------------------- 1297 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEA-----PWQIQETAPPSGWPPRGRVEFRNYCLRYRED----------------------- 1297 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCc-----cccccCCCCCCCCCCCCcEEEEEEEEEeCCC-----------------------
Confidence 567888999999998766551 100010011 1 134679999999998421
Q ss_pred hhhcCCccccceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 000523 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1445)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv 231 (1445)
..++|+|||++|+|||.++|+|++|||||||+++|.|+++|+ +|+|.+||.|+++... ++.++||
T Consensus 1298 ---------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iV 1365 (1522)
T TIGR00957 1298 ---------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITII 1365 (1522)
T ss_pred ---------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEE
Confidence 114999999999999999999999999999999999999998 9999999999988764 5789999
Q ss_pred cCCCCCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccc
Q 000523 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1445)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1445)
||++.+|. .||||||..... ...+.+.++.+. ++. ++. +-.|+++
T Consensus 1366 pQdp~LF~-gTIr~NLdp~~~-----~sdeei~~al~~---a~l------------------------~~~--I~~lp~G 1410 (1522)
T TIGR00957 1366 PQDPVLFS-GSLRMNLDPFSQ-----YSDEEVWWALEL---AHL------------------------KTF--VSALPDK 1410 (1522)
T ss_pred CCCCcccC-ccHHHHcCcccC-----CCHHHHHHHHHH---cCc------------------------HHH--HhhCccC
Confidence 99877665 599999973111 111222222111 110 111 1235678
Q ss_pred ccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000523 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1445)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1445)
.||.||+.+. +||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++| ++++.|.. ++...
T Consensus 1411 Ldt~v~e~G~-~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~T-vI~IAHRl-~ti~~ 1485 (1522)
T TIGR00957 1411 LDHECAEGGE-NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCT-VLTIAHRL-NTIMD 1485 (1522)
T ss_pred CCceecCCCC-cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCE-EEEEecCH-HHHHh
Confidence 8999998654 699999999999999999999999999999999999999999998742 3344 45566654 56667
Q ss_pred cCeEEEecCCeEEEecChhHHHH
Q 000523 392 FDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1445)
+|+|++|++|+|+++|+++++++
T Consensus 1486 ~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1486 YTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=347.96 Aligned_cols=217 Identities=27% Similarity=0.329 Sum_probs=180.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 377888887763 2469999999999999999999999999999999999875 4589999999875
Q ss_pred Cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000523 926 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1001 (1445)
.. ..+++.+||++|++.+++.+||.||+.+....+........+.++.++++++.++|.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 42 123567999999998899999999998853211111122334455688999999998766654 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~ 1081 (1445)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999986 788876
Q ss_pred cCC
Q 000523 1082 GPL 1084 (1445)
Q Consensus 1082 G~~ 1084 (1445)
++.
T Consensus 222 ~~~ 224 (501)
T PRK11288 222 FDD 224 (501)
T ss_pred cCc
Confidence 653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=314.70 Aligned_cols=210 Identities=19% Similarity=0.265 Sum_probs=164.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 49999999999999999999999999999999999998751 1259999999887432 1246799999998877
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+. ||+||+.++....+.... + +....++.+++.+||.+..... .+
T Consensus 98 ~~-tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~-~~ 142 (251)
T PRK14249 98 PK-SIFDNVAFGPRMLGTTAQ-S--------------------------------RLDEVVEKSLRQAALWDEVKDN-LH 142 (251)
T ss_pred cC-cHHHHHhhHHHhcCCChh-h--------------------------------HHHHHHHHHHHHhCCchhhhhH-hh
Confidence 75 999999987543221000 0 0011234455566654321111 13
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+....|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++ + . +.+|+.++|+..++.+.+|++++|
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~-~~tilivsh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-K-Q-NYTIAIVTHNMQQAARASDWTGFL 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-h-c-CCEEEEEeCCHHHHHhhCCEEEEE
Confidence 445679999999999999999999999999999999999999999999986 3 3 356666888889999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 220 LTGDLVEYGRTGEIF 234 (251)
T ss_pred eCCeEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=315.63 Aligned_cols=210 Identities=20% Similarity=0.330 Sum_probs=163.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
++|+|+|+++++||+++|+||||||||||+++|+|.++ |+...+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 49999999999999999999999999999999999986 2111289999999887431 1245799999988777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ .||+||+.++....+.... + .....++++++.++|........ +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14251 98 P-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDNL-D 142 (251)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHHh-c
Confidence 5 7999999876432211000 0 00123455677778742111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+....||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+.+|+|++|
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK--HQ-YTFIMVTHNLQQAGRISDQTAFL 219 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH--cC-CeEEEEECCHHHHHhhcCEEEEE
Confidence 3456799999999999999999999999999999999999999999999874 23 55666788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|+++..|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 220 MNGDLIEAGPTEEMF 234 (251)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=315.88 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=163.3
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCC-c---CccceEEEEcCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE-F---VPQRTAAYISQHDNHIG 239 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~-~---~~~~~~~yv~Q~d~~~~ 239 (1445)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+. ..+|+|.++|.++.. . ..++.++|++|++.+++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP 96 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence 48999999999999999999999999999999999987520 128999999988742 1 12457999999987777
Q ss_pred CCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccccccc
Q 000523 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1445)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1445)
.||+||+.++....+.... + .....+++.++.+|+.+...... +.
T Consensus 97 -~tv~~~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~~~~~~l~~~~~~~~-~~ 141 (249)
T PRK14253 97 -MSIYENVAYGLRAQGIKDK-----K----------------------------VLDEVVERSLRGAALWDEVKDRL-KS 141 (249)
T ss_pred -ccHHHHHHhHHHhcCCCch-----H----------------------------HHHHHHHHHHHHcCCchhhhHHh-hc
Confidence 8999999886432211000 0 00122344566667643221111 23
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000523 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1445)
Q Consensus 320 ~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~ 399 (1445)
....|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+.+|++++|+
T Consensus 142 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l~ 218 (249)
T PRK14253 142 HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFFL 218 (249)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999998743 3 456667888889999999999999
Q ss_pred CCeEEEecChhHH
Q 000523 400 DGQIVYQGPRELV 412 (1445)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1445)
+|++++.|+.+++
T Consensus 219 ~G~i~~~g~~~~~ 231 (249)
T PRK14253 219 MGELVEHDDTQVI 231 (249)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=319.96 Aligned_cols=207 Identities=21% Similarity=0.339 Sum_probs=162.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 235 (1445)
.+|+|+|++|++|++++|+|||||||||||++|+|..+ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 38999999999999999999999999999999999864 36 99999999887432 1245799999998
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
.+++ .||+||+.++.+..+.... ......++++++.+|+.......
T Consensus 130 ~l~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 130 NPFP-KSIFDNIAYGPRLHGINDK---------------------------------KQLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred CCCc-cCHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHhCCccchhhH
Confidence 7776 4999999986543211000 00112244556677763211000
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
-++.+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+++|++
T Consensus 176 -~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tvIivsH~~~~~~~~~d~i 251 (286)
T PRK14275 176 -LDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--S-YTIMIVTHNMQQASRVSDYT 251 (286)
T ss_pred -hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCCEE
Confidence 1234557999999999999999999999999999999999999999999998742 3 55666888888999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|++|++++.|+.+++.
T Consensus 252 ~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 252 MFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=314.48 Aligned_cols=220 Identities=24% Similarity=0.306 Sum_probs=174.7
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 377888887763 2369999999999999999999999999999999999621124689999999876
Q ss_pred Ccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000523 926 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLS----PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 996 (1445)
Q Consensus 926 ~~~---~~~~-~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 996 (1445)
... ...+ .++|++|++.+++.+|+.|++.+....... .+....+..+.++++++.+++. +..+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998775432110 1111222345578889999986 34444421
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-hceEeEEecC
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1075 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~-fD~v~~l~~g 1075 (1445)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++. +... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-
Confidence 2599999999999999999999999999999999999999999999998779999999999863 5454 799999985
Q ss_pred cEEEEEcCC
Q 000523 1076 GQEIYVGPL 1084 (1445)
Q Consensus 1076 G~~~y~G~~ 1084 (1445)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 899999986
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=315.19 Aligned_cols=211 Identities=21% Similarity=0.324 Sum_probs=165.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1445)
++|+|+|+++++|++++|+||||||||||+++|+|..+ |+...+|+|+++|.++.... .++.++|++|++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 98 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence 48999999999999999999999999999999999986 21112899999998864321 245799999988777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+. ||+||+.++....+..... .+....++++++.+||.+...+.+ +
T Consensus 99 ~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (251)
T PRK14244 99 PK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL-K 144 (251)
T ss_pred cC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 75 9999998864322110000 001123566788889865322222 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
..++.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++. .+ .+|+.++|+..++.+.+|+|++|
T Consensus 145 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 145 DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KN-FTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhcCEEEEE
Confidence 3456799999999999999999999999999999999999999999999863 33 55666788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 222 QSGRIVEYNTTQEIF 236 (251)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=317.42 Aligned_cols=218 Identities=19% Similarity=0.240 Sum_probs=173.4
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC--C-eEEEEEEEcC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 922 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 922 (1445)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478889887763 23699999999999999999999999999999999997531 1 2589999999
Q ss_pred ccCC-----cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000523 923 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 923 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 997 (1445)
.++. ...+++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+..... .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 8753 1234567999999988777 499999988654321 11 12234566778888774321111111 246
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec---
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1074 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~--- 1074 (1445)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999975 589999999986 58899999999982
Q ss_pred -----CcEEEEEcCC
Q 000523 1075 -----GGQEIYVGPL 1084 (1445)
Q Consensus 1075 -----gG~~~y~G~~ 1084 (1445)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4899999885
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=315.26 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=164.4
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++||+++|+||||||||||+++|+|..++.. ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 48999999999999999999999999999999999876311 1389999999987543 1235699999998777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ .||+||+.|+.+..+.... .+....++.+++.++|.+...+.. +
T Consensus 100 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 144 (253)
T PRK14261 100 P-KSIYENVAYGPRIHGEKNK---------------------------------KTLDTIVEKSLKGAALWDEVKDRL-H 144 (253)
T ss_pred c-ccHHHHHHhhHHhcCCCCH---------------------------------HHHHHHHHHHHHHhcCchhhHHHh-h
Confidence 7 4999999987543221000 001122445566777643211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+..+.||||||||++|||+|+.+|++++|||||+|||..++..+.+.|+++.. + .+|+.++|+..++.+.+|++++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998743 3 45666788888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|+++..|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 222 YLGKLIEFDKTTQIF 236 (253)
T ss_pred ECCEEEEcCCHHHHH
Confidence 999999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=315.71 Aligned_cols=214 Identities=26% Similarity=0.288 Sum_probs=172.0
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc--
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-- 924 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~-- 924 (1445)
+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (253)
T TIGR02323 4 LQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGA 68 (253)
T ss_pred EEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccc
Confidence 67888887763 2358999999999999999999999999999999999876 458999999976
Q ss_pred ---CCc---c----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccc
Q 000523 925 ---KKQ---E----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLV 991 (1445)
Q Consensus 925 ---~~~---~----~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~v 991 (1445)
... . ..++.++|++|++. ..+.+|+.|++.+..... .. .......+.++++++.+++.+ ..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~- 145 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL- 145 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC-
Confidence 322 1 12346899999974 345678999987543211 11 111233456788999999963 55544
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEe
Q 000523 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1070 (1445)
Q Consensus 992 g~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqps~~i~~~fD~v~ 1070 (1445)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+.+|+++
T Consensus 146 ----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~ 220 (253)
T TIGR02323 146 ----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLL 220 (253)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 4679999999999999999999999999999999999999999999998754 899999999986 5777899999
Q ss_pred EEecCcEEEEEcCC
Q 000523 1071 LMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1071 ~l~~gG~~~y~G~~ 1084 (1445)
+|++ |++++.|+.
T Consensus 221 ~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 221 VMQQ-GRVVESGLT 233 (253)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 799999875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=319.89 Aligned_cols=198 Identities=23% Similarity=0.232 Sum_probs=159.8
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
.+|+|+|++|++||+++|+|||||||||||++|+|.++ + +|+|.++|.++..... ++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 38999999999999999999999999999999999997 5 8999999998765432 467999999988776 59
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCC-------ccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-------DVCADTM 315 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt~ 315 (1445)
|+||+..... ...+.. .+.++.+|| +...|+.
T Consensus 93 v~~nl~~~~~-----~~~~~~------------------------------------~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK-----WSDEEI------------------------------------WKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC-----CCHHHH------------------------------------HHHHHHcCCHHHHHhCcccccce
Confidence 9999963211 011111 112222333 3456777
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
+++ ....||||||||++|||||+.+|++++|||||++||+.+...+.+.|++.. . +++|+.++|....+. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~-~~tii~isH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--A-DCTVILSEHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--C-CCEEEEEECCHHHHH-hCCEE
Confidence 776 456799999999999999999999999999999999999999999999752 3 455666777776665 59999
Q ss_pred EEecCCeEEEecChhHHHH
Q 000523 396 ILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1445)
++|++|++++.|+++++++
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999865
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=320.41 Aligned_cols=210 Identities=19% Similarity=0.283 Sum_probs=173.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.+.++|+++.++. +...+|+|||+.|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4778999888742 12358999999999999999999999999999999999874 379999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------PGV 996 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 996 (1445)
.. ...++.++||+|++.+++ .|++||+.... ... ++.++++++.++|.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345677999999998887 59999995321 111 23467888899998766654321 134
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCc
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG 1076 (1445)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|++.. .++|||+++|+++ .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999874 4899999999985 34 45999999985 7
Q ss_pred EEEEEcCC
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~~y~G~~ 1084 (1445)
+++++|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999986
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=315.57 Aligned_cols=212 Identities=22% Similarity=0.289 Sum_probs=167.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 48999999999999999999999999999999999998741 2479999999886421 1245699999988777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ +|++||+.+.....+.... .+....+..+++.+++.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRPK---------------------------------LEIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCcchhhhHh-c
Confidence 7 8999999876432211000 001123456777888754222111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+.+..||||||||++||++|+.+|++++|||||+|||..+...+.+.|++++... +++|+.++|+..++.++||+|++|
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~-~~tiiivsH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS-ELTMVIVSHNLHQVSRLSDFTAFF 224 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhcCEEEEE
Confidence 4456799999999999999999999999999999999999999999999875433 455566788889999999999999
Q ss_pred cC-----CeEEEecChhHHH
Q 000523 399 SD-----GQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~-----G~iv~~G~~~~~~ 413 (1445)
++ |+++++|+++++.
T Consensus 225 ~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 225 KGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ccCCCcCceEEEeCCHHHHH
Confidence 99 9999999999874
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=309.53 Aligned_cols=192 Identities=29% Similarity=0.418 Sum_probs=160.0
Q ss_pred cceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCCCCCCCC
Q 000523 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1445)
|+|+++++ |+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999998 999999998864311 2357999999988888999
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1445)
++||+.+..... .. + .....++++++.+||++..+.. ++
T Consensus 92 ~~~~l~~~~~~~---~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~ 130 (214)
T cd03297 92 VRENLAFGLKRK---RN-----R----------------------------EDRISVDELLDLLGLDHLLNRY-----PA 130 (214)
T ss_pred HHHHHHHHHhhC---CH-----H----------------------------HHHHHHHHHHHHcCCHhHhhcC-----cc
Confidence 999998764211 00 0 0112356678899997655544 44
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 ~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~~G~ 402 (1445)
.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++. ..+++|+.++|+..++.+.+|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-NLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998765 324556667888889999999999999999
Q ss_pred EEEec
Q 000523 403 IVYQG 407 (1445)
Q Consensus 403 iv~~G 407 (1445)
++++|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=311.35 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=169.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
-+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478889887763 2369999999999999999999999999999999999765 4589999999865
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 1001 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 1001 (1445)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 224567899999988876 5999999876443321 11 123467899999995 344544 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 000523 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1002 GqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y 1080 (1445)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|.|||+++|+++. + +.+|++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999876 48999999999863 4 56999999964443444
Q ss_pred Ec
Q 000523 1081 VG 1082 (1445)
Q Consensus 1081 ~G 1082 (1445)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 33
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=347.23 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=173.6
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc----ccccceEEEeccCCCCCCCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFV 947 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~~l 947 (1445)
+.+|+|||+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 469999999999999999999999999999999999875 458999999987642 12345699999998888999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000523 948 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1445)
Q Consensus 948 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTs 1027 (1445)
||.|++.+..........+.++..+.++++++.+++.+..+.. +..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998753211111112333445688999999998776665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCCCC
Q 000523 1028 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1086 (1445)
Q Consensus 1028 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~~~ 1086 (1445)
|||+.++..+++.|+++++.|+|||+++|++. ++.+.+|++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999878999999999986 57788999999985 79999998643
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=298.63 Aligned_cols=156 Identities=29% Similarity=0.450 Sum_probs=141.5
Q ss_pred EEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCHH
Q 000523 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTIY 950 (1445)
Q Consensus 873 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv~ 950 (1445)
.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++..|+.
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 59999999999999999999999999999999999875 458999999987543 23456799999999888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000523 951 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030 (1445)
Q Consensus 951 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD 1030 (1445)
|++. ||||||||++||++|+.+|++++|||||+|||
T Consensus 92 ~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 92 ENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred HHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 9873 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 1031 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 1031 ~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++|
T Consensus 128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 128 PESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999877899999999986 577789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=359.15 Aligned_cols=212 Identities=29% Similarity=0.452 Sum_probs=177.8
Q ss_pred CceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCc
Q 000523 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 923 (1445)
Q Consensus 844 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 923 (1445)
...++|+|++|.++. ++.+|+|+|++++|||++||+||||||||||++.|.|..+ +.+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCE
Confidence 456999999999862 3469999999999999999999999999999999999876 46899999998
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 000523 924 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 993 (1445)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~ 993 (1445)
++++ ..+++.++||+|++.++. -||+||+.++. ++.++++ ++++++..++. +-.|+.+|.
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge 461 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGE 461 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecC
Confidence 8654 457888999999998887 89999999862 2233333 44444444332 246888884
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
. ..+||||||||++||||++++|+||+||||||+||+.+...+++.++++. +++|+|+++|+++. ...+|++++|+
T Consensus 462 ~-G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~ 537 (567)
T COG1132 462 R-GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLD 537 (567)
T ss_pred C-CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEE
Confidence 3 46899999999999999999999999999999999999999999999876 57899999999963 45599999998
Q ss_pred cCcEEEEEcCC
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~~y~G~~ 1084 (1445)
+ |+++..|..
T Consensus 538 ~-G~i~e~G~h 547 (567)
T COG1132 538 N-GRIVERGTH 547 (567)
T ss_pred C-CEEEEecCH
Confidence 6 789999985
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=304.23 Aligned_cols=178 Identities=26% Similarity=0.336 Sum_probs=150.2
Q ss_pred eEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc-----ccccceEEEeccCCC-CCC
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HSP 945 (1445)
Q Consensus 872 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~-~~~ 945 (1445)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 469999999999999999999999999999999999876 458999999987531 124567999999973 233
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000523 946 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1445)
Q Consensus 946 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~illLDEP 1025 (1445)
..||+||+.+..... ..+.++.++.++++++.++|.+..+.. +..||||||||++|||+|+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998865432 123334445678999999998777765 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 000523 1026 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1059 (1445)
Q Consensus 1026 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps 1059 (1445)
|+|||+.++..+.+.|+++.++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=314.84 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=167.7
Q ss_pred EeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHH
Q 000523 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 950 (1445)
Q Consensus 874 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 950 (1445)
+|+|+|+++++||+++|+|+||||||||+++|+|..+ .+|+|.++|.+... ...++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999864 27999999987643 22345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000523 951 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1023 (1445)
Q Consensus 951 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~-------~p~illLD 1023 (1445)
||+.+.... ........+.++++++.++|.+..+.. +..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112223345678999999998766665 35799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEEEEEcCC
Q 000523 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1024 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~~y~G~~ 1084 (1445)
|||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877899999999986 57889999999985 799999885
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=314.58 Aligned_cols=206 Identities=26% Similarity=0.379 Sum_probs=164.6
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCcc-----CCCcCc-------cceEEEEcC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~Q 233 (1445)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 3899999999999999999999999999999999999998 9999999976 543322 245899999
Q ss_pred CCC--CCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcc-
Q 000523 234 HDN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1445)
Q Consensus 234 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1445)
++. ..+..|+.||+.+....... ..+ .+....++++++.+|+.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~--------------------------------~~~~~~~~~~l~~l~l~~~ 140 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGA-RHY--------------------------------GNIRAAAHDWLEEVEIDPT 140 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcc-cch--------------------------------HHHHHHHHHHHHHcCCChh
Confidence 864 45667999999754211000 000 001123567889999963
Q ss_pred cccccccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHh
Q 000523 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1445)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1445)
..++. ++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++... ..+.+++.++|+..++..
T Consensus 141 ~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 141 RIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-DLGLAVIIVTHDLGVARL 214 (253)
T ss_pred hhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHH
Confidence 44443 456999999999999999999999999999999999999999999998754 334555567888889999
Q ss_pred hcCeEEEecCCeEEEecChhHHH
Q 000523 391 LFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 391 ~~D~iilL~~G~iv~~G~~~~~~ 413 (1445)
.+|++++|++|++++.|+.+++.
T Consensus 215 ~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 215 LAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred hcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=314.48 Aligned_cols=218 Identities=22% Similarity=0.269 Sum_probs=174.8
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCC---eEEEEEEEcCc
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 923 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 923 (1445)
+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..... +.+|+|.++|.
T Consensus 4 l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (250)
T PRK14266 4 IEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV 70 (250)
T ss_pred EEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCE
Confidence 66788877653 246999999999999999999999999999999999974311 25899999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000523 924 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 998 (1445)
Q Consensus 924 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 998 (1445)
++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++.+.++++.+++.+........ .+..
T Consensus 71 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~~ 146 (250)
T PRK14266 71 DIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SALG 146 (250)
T ss_pred EcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Cccc
Confidence 7542 2345679999999888875 99999987643221 112233445678889999885432222222 2467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcEE
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 999 LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~~ 1078 (1445)
||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i 223 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEI 223 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeE
Confidence 999999999999999999999999999999999999999999999864 899999999986 58888999999985 799
Q ss_pred EEEcCC
Q 000523 1079 IYVGPL 1084 (1445)
Q Consensus 1079 ~y~G~~ 1084 (1445)
++.|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14266 224 IESGLT 229 (250)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=316.93 Aligned_cols=206 Identities=25% Similarity=0.324 Sum_probs=169.0
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCC--C
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1445)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 45999999999999999999999999999999999999998 9999999998765432 35799999986 3
Q ss_pred CCCCCCHHHHHHHhHHhc-CCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-ccccc
Q 000523 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (1445)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1445)
+.+..|+.|++.+..... +. . ..+....++++++.+|++ ...++
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSL--D--------------------------------KAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccC--C--------------------------------HHHHHHHHHHHHHHcCCChhHhhC
Confidence 567899999997643210 00 0 001122456788899996 34444
Q ss_pred cccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000523 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1445)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~ 394 (1445)
..+.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ ..+++++.++|+..++.+++|+
T Consensus 148 -----~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiiivsH~~~~i~~~~d~ 221 (268)
T PRK10419 148 -----RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-QFGTACLFITHDLRLVERFCQR 221 (268)
T ss_pred -----CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-HcCcEEEEEECCHHHHHHhCCE
Confidence 3456999999999999999999999999999999999999999999998764 3345666678888899999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 000523 395 IILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1445)
+++|++|++++.|+.+++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=358.36 Aligned_cols=213 Identities=23% Similarity=0.330 Sum_probs=178.6
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++++|++|.++. .++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEE
Confidence 46999999998842 12469999999999999999999999999999999999876 458999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 994 (1445)
.++ ..+++.++|+||++.+++ -|++||+.++. +.+.+. +.++++++.+++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 654 456788999999998886 69999998741 112222 346677777776543 46667764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
| .+||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||++++|++
T Consensus 478 g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 3 6799999999999999999999999999999999999999999999875 4799999999985 5778999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 799999984
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=316.03 Aligned_cols=210 Identities=21% Similarity=0.276 Sum_probs=164.2
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
++|+|+|+++++||+++|+|+|||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 48999999999999999999999999999999999988531 1389999999887431 1235799999998777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ +||+||+.++.+..+.-. + .+....++++++.+|+....... -+
T Consensus 101 ~-~tv~enl~~~~~~~~~~~-------------------~--------------~~~~~~~~~~l~~~~l~~~l~~~-~~ 145 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKLP-------------------Q--------------ADLDEIVESALKGAALWQEVKDK-LN 145 (259)
T ss_pred C-ccHHHHHHHHHHHhcCCC-------------------H--------------HHHHHHHHHHHHHcCCcchhhhH-hc
Confidence 7 899999988653221000 0 00112345566777763211111 12
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
..+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+ .+|+.++|+.+++.+.+|++++|
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR--SE-LTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCeEEEE
Confidence 3455799999999999999999999999999999999999999999999864 23 56666788899999999999999
Q ss_pred c-----CCeEEEecChhHHH
Q 000523 399 S-----DGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~-----~G~iv~~G~~~~~~ 413 (1445)
+ +|++++.|+++++.
T Consensus 223 ~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 223 STDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eccCCCCceEEEeCCHHHHh
Confidence 7 59999999998874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=328.56 Aligned_cols=211 Identities=24% Similarity=0.353 Sum_probs=179.2
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccC
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 925 (1445)
.++++|++++++.+ +.++|+|+|+++++||++||+|+||||||||++.|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999998743 3469999999999999999999999999999999999765 5689999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPG 995 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~ 995 (1445)
.. ..+++.+++++|...++ .-|+++||..+ +++.++ +.++++++.+||.+.... .+|..
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA-----~~~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLA-----NPDASD----EELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhc-----CCCCCH----HHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 43 34667789999976655 46999999874 233333 347889999999886544 35544
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecC
Q 000523 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 996 ~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~g 1075 (1445)
.+.||||||||++|||+|++|.++++|||||.|||+.|..+|++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 578999999999999999999999999999999999999999999998764 899999999986 4688999999985
Q ss_pred cEEEEEcCC
Q 000523 1076 GQEIYVGPL 1084 (1445)
Q Consensus 1076 G~~~y~G~~ 1084 (1445)
|+++..|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 899999986
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=313.18 Aligned_cols=216 Identities=22% Similarity=0.301 Sum_probs=174.0
Q ss_pred eeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCC--C--eEEEEEEEc
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G--YITGNITIS 921 (1445)
Q Consensus 846 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~--~~~G~i~i~ 921 (1445)
.+.++++++++. ++.+|+|+|+++.+||+++|+|+||||||||+++|+|...+ | .+.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 377888887763 34699999999999999999999999999999999997642 1 123666666
Q ss_pred CccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000523 922 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLP 994 (1445)
Q Consensus 922 g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 994 (1445)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665432 2345679999999999999999999988643321 1122344456788999999864 22332
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
+..||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+.+|++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999999864 699999999986 47788999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 799999875
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=312.72 Aligned_cols=210 Identities=20% Similarity=0.309 Sum_probs=161.7
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1445)
.+|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|.++... ..++.++|++|++.++
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 48999999999999999999999999999999999875 3111289999999887431 1235799999998777
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+ .||+||+.+..+..+.... +. ....+.+.++.+++........ +
T Consensus 99 ~-~tv~~nl~~~~~~~~~~~~-~~--------------------------------~~~~~~~~l~~~~l~~~i~~~~-~ 143 (252)
T PRK14255 99 P-FSIYENVIYGLRLAGVKDK-AV--------------------------------LDEAVETSLKQAAIWDEVKDHL-H 143 (252)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-HH--------------------------------HHHHHHHHHHHcCCccchhhHH-h
Confidence 7 7999999886543221100 00 0012234455555532111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+..++.+.+|+|++|
T Consensus 144 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISDKTAFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999998743 3 45666788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000523 399 SDGQIVYQGPRELVL 413 (1445)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1445)
++|+++..|+..++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 221 LTGNLIEFADTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999888763
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=355.82 Aligned_cols=210 Identities=22% Similarity=0.354 Sum_probs=178.5
Q ss_pred ceeEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCcc
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 924 (1445)
..++++|++|.++. ++.+|+|+|++++|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEE
Confidence 46999999998841 1359999999999999999999999999999999999876 458999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 994 (1445)
+++ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+|+.+.. |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4577899999999999885 9999998852 122 23467888888877543 4556553
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEec
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~ 1074 (1445)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ ++|+|+++|+++ ....+|++++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999998864 699999999985 5677999999985
Q ss_pred CcEEEEEcCC
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~~y~G~~ 1084 (1445)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 899999985
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=310.82 Aligned_cols=198 Identities=26% Similarity=0.387 Sum_probs=159.0
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1445)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++ .|
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~t 96 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DT 96 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-cc
Confidence 4999999999999999999999999999999999999998 9999999988755432 357899999887776 59
Q ss_pred HHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCc-cccccccccccc
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (1445)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1445)
|+||+.+.....+. .. ....++.+++.+||. ...++. +
T Consensus 97 v~enl~~~~~~~~~--~~----------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 135 (225)
T PRK10247 97 VYDNLIFPWQIRNQ--QP----------------------------------DPAIFLDDLERFALPDTILTKN-----I 135 (225)
T ss_pred HHHHHHhHHhhcCC--Ch----------------------------------HHHHHHHHHHHcCCChHHhcCC-----c
Confidence 99999875432110 00 011245678889995 344444 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec-C
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS-D 400 (1445)
Q Consensus 322 ~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~-~ 400 (1445)
+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+..+ ++|+.++|+..++. .+|++++|+ +
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sh~~~~~~-~~d~i~~l~~~ 213 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN-IAVLWVTHDKDEIN-HADKVITLQPH 213 (225)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECChHHHH-hCCEEEEEecc
Confidence 56999999999999999999999999999999999999999999998765334 44555677777774 699999994 6
Q ss_pred CeEEEecChh
Q 000523 401 GQIVYQGPRE 410 (1445)
Q Consensus 401 G~iv~~G~~~ 410 (1445)
+..+.+|+++
T Consensus 214 ~~~~~~~~~~ 223 (225)
T PRK10247 214 AGEMQEARYE 223 (225)
T ss_pred cchHhhhhhc
Confidence 6677777664
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=308.21 Aligned_cols=196 Identities=28% Similarity=0.400 Sum_probs=160.3
Q ss_pred ceeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1445)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1445)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 45999999999999999999999999999999999999998 9999999998754332 35799999998888
Q ss_pred CCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccc
Q 000523 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1445)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1445)
+.+|+.||+.++...... .. ..+....++++++.+||.+..+..+
T Consensus 95 ~~~t~~~n~~~~~~~~~~-~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 139 (220)
T TIGR02982 95 GFLTARQNVQMALELQPN-LS--------------------------------YQEARERARAMLEAVGLGDHLDYYP-- 139 (220)
T ss_pred CCCCHHHHHHHHHHhccC-CC--------------------------------HHHHHHHHHHHHHHcCChhhhhcCh--
Confidence 889999999986532210 00 0011224567889999986666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000523 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1445)
Q Consensus 319 ~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL 398 (1445)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++....+.++|+ ++|+.. ..+.+|+|++|
T Consensus 140 ---~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sh~~~-~~~~~d~v~~l 214 (220)
T TIGR02982 140 ---HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI-VTHDNR-ILDVADRIVHM 214 (220)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHH-HHhhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999876433445444 566655 56899999999
Q ss_pred cCCeE
Q 000523 399 SDGQI 403 (1445)
Q Consensus 399 ~~G~i 403 (1445)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=317.20 Aligned_cols=232 Identities=21% Similarity=0.257 Sum_probs=177.1
Q ss_pred hhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHHhhhhhcCCccccceeeecceeEEeCCeEEEEEcCC
Q 000523 108 DRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPP 187 (1445)
Q Consensus 108 ~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~ 187 (1445)
|...+.++..-++++||++.+. .+++|+|+|+++++||+++|+|||
T Consensus 10 ~~~~~~~~~~~l~~~nl~~~~~----------------------------------~~~~l~~vs~~i~~Ge~~~IiG~n 55 (274)
T PRK14265 10 DSATINPDHSVFEVEGVKVFYG----------------------------------GFLALVDVHLKIPAKKIIAFIGPS 55 (274)
T ss_pred cccccCCCCceEEEeeEEEEeC----------------------------------CeEEEeeeeeEEcCCCEEEEECCC
Confidence 4445556666788999998762 124899999999999999999999
Q ss_pred CCCHHHHHHHHhCCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCCCCHHHHHHHhHHhcCCCchh
Q 000523 188 SSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRY 260 (1445)
Q Consensus 188 GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~ 260 (1445)
||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|+..+++ .||.||+.++....+...
T Consensus 56 GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~-- 132 (274)
T PRK14265 56 GCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKG-- 132 (274)
T ss_pred CCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcCchH--
Confidence 9999999999999986411 1289999999887431 12467999999887776 499999988643221000
Q ss_pred hhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCcccccccccccccccCChhhhhHHHHHHHHhc
Q 000523 261 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340 (1445)
Q Consensus 261 ~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~aL~~ 340 (1445)
+ ....++..++.+++....... -+..+..|||||||||+||+||+.
T Consensus 133 ----~-----------------------------~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 133 ----N-----------------------------LDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred ----H-----------------------------HHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHHHHHHHHhh
Confidence 0 001123345555553211111 123445799999999999999999
Q ss_pred CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEec---------CCeEEEecChhH
Q 000523 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS---------DGQIVYQGPREL 411 (1445)
Q Consensus 341 ~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~iilL~---------~G~iv~~G~~~~ 411 (1445)
+|++|||||||+|||..++..+.+.|+++. .+ ++|+.++|+..++.+++|++++|+ +|++++.|+.++
T Consensus 179 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 179 KPDVLLMDEPCSALDPISTRQVEELCLELK--EQ-YTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ 255 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 999999999999999999999999999874 23 566668889999999999999997 899999999988
Q ss_pred HH
Q 000523 412 VL 413 (1445)
Q Consensus 412 ~~ 413 (1445)
+.
T Consensus 256 ~~ 257 (274)
T PRK14265 256 MF 257 (274)
T ss_pred HH
Confidence 74
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=306.27 Aligned_cols=197 Identities=28% Similarity=0.376 Sum_probs=163.7
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|++..+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56777776652 2469999999999999999999999999999999999865 45899999998753
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000523 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1006 (1445)
Q Consensus 927 ~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1006 (1445)
....++.++|++|++.+++..|+.|++.+....+. .. ++.++++++.++|.+..+.. .+.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHH
Confidence 22255678999999888889999999987543321 11 12378899999998766554 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEe
Q 000523 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 1007 l~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~ 1073 (1445)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++.+ |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 99999999999999999999999999999999999998777999999999985 3443 8887774
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=316.01 Aligned_cols=207 Identities=16% Similarity=0.297 Sum_probs=160.9
Q ss_pred eeeecceeEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1445)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 235 (1445)
.+|+|+|++|++|++++|+|+|||||||||++|+|.++ |+ +|+|.++|+++... ..++.++|++|++
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKT---TGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCC---ceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 38999999999999999999999999999999999987 45 99999999887421 1246799999988
Q ss_pred CCCCCCCHHHHHHHhHHhcCCCchhhhhHHHHHHHHHcCCCCCCCHHHHHHHHhhhhhhHhHHHHHHHHHcCCccccccc
Q 000523 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1445)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1445)
.+++ .||+||+.++.+..+.... +. ....+...++.+++.......
T Consensus 115 ~~~~-~tv~eni~~~~~~~~~~~~-~~--------------------------------~~~~~~~~l~~~~~~~~l~~~ 160 (271)
T PRK14238 115 NPFP-KSIYDNVTYGPKIHGIKDK-KT--------------------------------LDEIVEKSLRGAAIWDELKDR 160 (271)
T ss_pred cccc-ccHHHHHHHHHHhcCCCcH-HH--------------------------------HHHHHHHHHHHcCCcchHHHH
Confidence 7776 5999999986543211000 00 011123344444432111111
Q ss_pred ccccccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000523 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1445)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~aL~~~p~vllLDEptsgLD~~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~~D~i 395 (1445)
. +..++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+.+|++
T Consensus 161 ~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 161 L-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--D-YSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred H-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--C-CEEEEEEcCHHHHHHhCCEE
Confidence 1 234557999999999999999999999999999999999999999999998742 3 55666888888999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 000523 396 ILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1445)
++|++|++++.|+.+++.
T Consensus 237 ~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 237 AFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=311.57 Aligned_cols=209 Identities=26% Similarity=0.408 Sum_probs=167.2
Q ss_pred eEEecceeeeecchhhhhccccCCceEEeecceEEeeCCcEEEEEcCCCCChHHHHHhHhCCCCCCeEEEEEEEcCccCC
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 926 (1445)
++++|+++.+.. .++.+|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 567777766531 12359999999999999999999999999999999999865 45899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000523 927 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGVS 997 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 997 (1445)
. ...++.++|++|++.+++ .|+.|++.+... ... ++.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 224567999999988776 699999876421 111 2235678888888776665431 11245
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEeEEecCcE
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 998 ~LSgGqrqRl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqps~~i~~~fD~v~~l~~gG~ 1077 (1445)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++.. .+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~--~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL--LDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH--HHhCCEEEEEeC-Ce
Confidence 89999999999999999999999999999999999999999999998764 899999999863 478999999986 67
Q ss_pred EEEEc
Q 000523 1078 EIYVG 1082 (1445)
Q Consensus 1078 ~~y~G 1082 (1445)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 77654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1445 | ||||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 7e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 9e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 9e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 4e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 6e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 7e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 8e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 8e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 8e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 9e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-04 |
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1445 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 9e-26 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-16 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 8e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-17 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 9e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-16 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-22 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-09 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-15 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 8e-14 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-07 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-10 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 4e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 6e-07 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-07 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 9e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-10 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 9e-06 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 7e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-06 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-06 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-05 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 7e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 7e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 7e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 9e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 4e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 4e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 9e-26
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-PKKQETFA 931
L G+S G + L+G +GAGKTT + +++ + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 932 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
R Y + + E L F A S + E ++ E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1051 VVCTIH 1056
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 55/259 (21%), Positives = 90/259 (34%), Gaps = 65/259 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--- 221
ILK +S I+ G + L+GP +GKTT L ++ + P+ SG VT G ++ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 222 -------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
++P+ AY M E L F A
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYAS------------------ 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
E + + ++ GL + + S G +++
Sbjct: 119 ----------------SSSEIEEMVERATEIAGL-----GEKIKDRVSTYSKGMVRKLLI 157
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393
++ P L +DE ++GLD ++ L+Q G ++ E L D
Sbjct: 158 ARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCD 214
Query: 394 DIILLSDGQIVYQG-PREL 411
I L+ +G IV G EL
Sbjct: 215 RIALIHNGTIVETGTVEEL 233
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 8e-23
Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETFA 931
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
+I + + I +++ + L A L K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK-- 130
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1050
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 4e-17
Identities = 39/255 (15%), Positives = 77/255 (30%), Gaps = 66/255 (25%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S +L+ ++ I+ G + GP GKTTLL ++ L P G + YNG +
Sbjct: 17 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 73
Query: 220 DE------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ F+P+ +++V + L A GV + +
Sbjct: 74 TKVKGKIFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------- 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
L+ + + + +S G +RV
Sbjct: 119 -----------------------------LESVEVLDLKKK------LGELSQGTIRRVQ 143
Query: 334 TGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
++ + +D+ +D + +++ + I G +IS + E
Sbjct: 144 LASTLLVNAEI-YVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYC 197
Query: 393 DDIILLSDGQIVYQG 407
D L
Sbjct: 198 DVNENLHKYSTKIDK 212
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 9e-23
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 41/239 (17%)
Query: 858 MPEEMKVQGVL---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 912
M + + V+ + + + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 913 YITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLF------SAWLRLSPEV 965
I + G+ Q SPF ++ + +L + + +
Sbjct: 61 KIE--------------VYQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSH- 104
Query: 966 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025
D + + ++ + L L + + LS QR+ + IA + + +I +DEP
Sbjct: 105 DYQV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEP 155
Query: 1026 TSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083
TS LD IV+ + + TVV T HQP+ + ++ L+ + G
Sbjct: 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 36/254 (14%), Positives = 80/254 (31%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ + ++ + G + +LG GK+TLL L G P G +
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
++ ++ Q + +V + + G ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM------------------------GRST------HI 95
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA- 344
A + L L L A +SGGQ++ + ++ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDIILL 398
+ +DE ++ LD + +++ L + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFA 931
L +SG R G + L+G +GAGK+TL+ +AG G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 932 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
Y Q PF ++ L + +E +++V + L+
Sbjct: 73 LHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRS 123
Query: 991 VGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
G +V + H D+ +L+K G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 52/265 (19%), Positives = 84/265 (31%), Gaps = 74/265 (27%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG + G++ + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV--------TT 334
+ L LD +SGG+ +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL--- 391
+ L L +DE LD + + L G A++ +DL
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSA--LSQQGLAIVMSS------HDLNHT 196
Query: 392 ---FDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-20
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 35/224 (15%)
Query: 838 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV------LLNGVSGAFRPGVLTALM 891
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 892 GVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 949
G +G GKTTL+ +LAG + G + +S P+K + F
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPGTVRQLF--- 434
Query: 950 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1009
++ + F +V++ + ++ + V LS + +R+ I
Sbjct: 435 FKKI-----------RGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 1010 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1052
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-14
Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT---ISGYPKKQETFARISGYC 937
RPG + L+G +G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 938 EQND---IHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
E + I +V I + L ++ E + +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1050 TVV 1052
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 77/264 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--------KVSGTVTYNGH 217
+ +PG++ L+G GK+T L LAGK P L + G
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 218 DMDEFVP-----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
++ + A Q+ ++I ++ + + + ++ R K
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRYIKI 208
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
++ + ++ L SGG+ +R
Sbjct: 209 LQLEN--------------------VLKRDIEKL------------------SGGELQRF 230
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SL 381
+G + DE S+ LD +R + VI S+
Sbjct: 231 -----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS-LL-APTKYVICVEHDLSV 283
Query: 382 LQPAPETYDLFDDIILLSDGQIVY 405
L L D + ++ VY
Sbjct: 284 LD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-10
Identities = 52/297 (17%), Positives = 86/297 (28%), Gaps = 88/297 (29%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K + +L G + +++G +GKTTL+ LAG L P G
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+P+ + Q TVR+ R + + +
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR-----------GQFLNPQFQTDV---- 451
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+K L +D D V +SGG+ +RV +
Sbjct: 452 -----------------------VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
PA +DE S LDS +R+ +++ + L D
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRR-FILHNKKTAFIVEHDFIMAT------YLAD 536
Query: 394 DIILLSDGQIVY---QGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
+I+ + P L G FL+ VT R+D +
Sbjct: 537 KVIVFEGIPSKNAHARAPESL--------------LTGCNRFLKNLNVTFRRDPNSF 579
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-19
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 32/244 (13%)
Query: 815 GQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK--- 871
G S + E + K + F P+ + F ++ VD+ E V+ K
Sbjct: 309 GIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYG 368
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 929
L G R G + ++G +G GKTT + +LAG T G + ++T++ K Q
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ-- 424
Query: 930 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
I T+YE L S + + E+++ + + L
Sbjct: 425 --YIK--------AEYEGTVYE--LLS-----KIDSSKLNSNFYKTELLKPLGIIDLYDR 467
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1048
V LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++
Sbjct: 468 NV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522
Query: 1049 RTVV 1052
+T +
Sbjct: 523 KTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK-- 926
+ + G++ ++G +G GKTT + +LAG+ + + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 927 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
Q F R+ + + +V + + L +VD + +EV++ +EL +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENV 221
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1046
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 1047 TGRTVV 1052
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-13
Identities = 64/296 (21%), Positives = 99/296 (33%), Gaps = 84/296 (28%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
K L+ G I+ G + ++GP GKTT + LAG +PT G V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
T AY Q+ E TV E L+ ++L +
Sbjct: 418 --------TVAYKPQYIKAEYEGTVYELLSKIDS-----------SKLNSNFYKTEL--- 455
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
LK LG+ D V D +SGG+ +RV +
Sbjct: 456 ------------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLF----- 392
+ A +DE S LD + +R + N TA V+ +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYV 538
Query: 393 -DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
D +I+ +G+ G L R+G+ FL +T R+D
Sbjct: 539 SDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 6e-09
Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 70/231 (30%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEF 222
+ ++K G + ++GP +GKTT + LAG+L P L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 223 VPQRTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
Q+ + + + G E+L ++ K
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAV-------------KGKVRELLKKVDEVGKF-- 209
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ +K L L+ V D + +SGG+ +RV
Sbjct: 210 -------------------------EEVVKELELE-----NVLDRELHQLSGGELQRV-- 237
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHI-NSGTAVI 379
+ AL F DE S+ LD ++ +R + N G AV+
Sbjct: 238 ---AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR---RLANEGKAVL 282
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 62/264 (23%), Positives = 95/264 (35%), Gaps = 63/264 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
TILK +S I G +L G +GKTTLL L T SGTV G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
++S + V + + S + +G Y+ + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIR---------- 139
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
A + LK++G+ A I +S G+K+RV M
Sbjct: 140 --------NEAHQ----------LLKLVGMSAKAQQY-----IGYLSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL----LQPAPETY 389
+ AL L +DE + GLD +++ L A+I ++
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA-- 228
Query: 390 DLFDDIILLSDGQIVYQGPRELVL 413
F I+LL DGQ + QG E +L
Sbjct: 229 -NFSKILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETF 930
+L +S G L G++GAGKTTL+++L T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 931 ------ARISGYCEQNDIH---SPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVME 979
I G+ + + + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 980 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
LV ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 1040 TVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + ++ H +I F ++ L+K G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 2e-18
Identities = 59/288 (20%), Positives = 106/288 (36%), Gaps = 74/288 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK ++ IK G +T +LG GK+TL G L P+ SG + ++ +D ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + DN + +V + ++F A + E+ +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
LK G++ D +S GQKKRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
A+A L +DE + GLD +I+ L + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + R P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 930
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 931 ARIS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPE---VDSETRKMFIDEVME 979
++ G Q+ P ++Y+ + F + + + +D ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG------AVNMKLPEDEIRKRVDNALK 129
Query: 980 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
+ L+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 130 RTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 1040 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ + G T++ H + D +F+MK G
Sbjct: 185 LLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 43/212 (20%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFARISGYCEQND 941
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 942 IHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG----- 995
VT+ + + L + + D +E+++ + L
Sbjct: 82 EAYEIGVTVNDIVYLY--EEL--------KGLDRDLFLEMLKA-------LKLGEEILRR 124
Query: 996 -VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILV 181
Query: 1055 IHQPSIDIFEAF---DELFLMKRGGQEIYVGP 1083
H ++ + G +
Sbjct: 182 TH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 8e-14
Identities = 47/288 (16%), Positives = 89/288 (30%), Gaps = 83/288 (28%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
K L++++ + G ++LGP SGKTTLL A++G L P SG + NG +
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 219 MDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Y + + + +TV + + +G+ R+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
E LK L L + + +S GQ V
Sbjct: 109 ---------------LEM-------LKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-- 390
ALA + +DE +D++ I +++ ++ T++
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVISRYIKE-YGK---EGILV-------THELD 186
Query: 391 ----LFDDIILLSDGQIVYQG--PREL----VLEFFASMGFRCPKRKG 428
+ G + EL ++E +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-18
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L G + G + ++G +G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
I T+YE L S + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYE--LLS-----KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1051
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1052 V 1052
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 9e-13
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--QETFARISGY 936
+ G++ ++G +G GK+T + +LAG+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 937 CEQNDIH----SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
+I +V + + + L + D + ++EV++ +EL + + +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREI- 156
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 9e-11
Identities = 64/292 (21%), Positives = 101/292 (34%), Gaps = 78/292 (26%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K L+ G IK G + ++GP GKTT + LAG +PT G + ++
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ PQ YI E TV E L+ ++L +
Sbjct: 351 --YKPQ----YIKAD----YEGTVYELLSKIDA-----------SKLNSNFYKTEL---- 385
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
LK LG+ D V + +SGG+ +RV ++
Sbjct: 386 -----------------------LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLFDDIIL- 397
A +DE S LD + +R + N TA V+ D+++
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE------------HDVLMI 465
Query: 398 --LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
+SD +V++G E A R+G+ FL +T R+D
Sbjct: 466 DYVSDRLMVFEG--EPGKYGRALPPM--GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 57/331 (17%), Positives = 100/331 (30%), Gaps = 99/331 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEF 222
+ V+K G + ++GP +GK+T + LAG+L P L S +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPQRTAAYI--------SQHDNHIGEMT---VRETLAFSARCQGVGTRYEMLTELARREK 271
Q+ + I + V E L + + +L K
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A ++ + + ++ L SGG+ +R
Sbjct: 145 ALELEN--------------------VLEREIQHL------------------SGGELQR 166
Query: 332 VTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------S 380
V + AL F DE S+ LD +R+ G +V+ +
Sbjct: 167 V-----AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR--LSEEGKSVLVVEHDLA 219
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY------QGPRELVLEFFAS------MGFRCPKRKG 428
+L L D I ++ VY +G R + EF + FR P
Sbjct: 220 VLD------YLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR-PYEIK 272
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQ 459
+ V ++ + K Y ++
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLE 303
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 930
L +G + G + ++G +G GKTT +L G G +T I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 931 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 990
+ T+ + +L + + T F +EV + + L+ L +S
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
V + LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 1051 VVCTI 1055
V I
Sbjct: 438 VTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-12
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 23/185 (12%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGY------ 936
+ + ++G +G GKTT++ +LAG + N K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 937 -----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
E +H Y S + + + DEV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEI--LTKIDERGKKDEVKELLNMTNLWN--- 133
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 1052 VCTIH 1056
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 7e-11
Identities = 54/298 (18%), Positives = 92/298 (30%), Gaps = 88/298 (29%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
KK L +G K G + +LGP GKTT L G++ G+VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+Y Q I P+
Sbjct: 333 ---------SYKPQR----------------------------------------IFPNY 343
Query: 280 DIDVYM---KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
D V A ++ + K L L ++ V D +SGG+ +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLF--- 392
+ A +D+ S+ LD + + +++ +I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHD 450
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
D II+ G+ G + + G+ +FL+E VT R+D
Sbjct: 451 YIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 52/340 (15%), Positives = 101/340 (29%), Gaps = 99/340 (29%)
Query: 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYN-------GHD 218
K K + +LG GKTT+L LAG++ P + V + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 M-----DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ + + + + Q+ + + GT E+LT++ R K
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
+K ++ + + +L SGG +R+
Sbjct: 121 EVKELLNM--------------TNLWNKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLL 382
+V +L D+ S+ LD + +R+ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYDLFDDIILLSDGQIVYQG------PRELVLEFFAS------MGFRCPKRKGVA 430
L D I ++ VY R + F M R + K +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFML 254
Query: 431 DFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHV 470
+ ++ KD + + + +F +
Sbjct: 255 KEVSDLDLSKDLKTKM---KWTKIIKKLGDFQLVVDNGEA 291
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 39/241 (16%)
Query: 846 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 903
+ V ++ P E K L VS G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 904 VLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR 960
++AG T +G++ G KK R G Q F +++ + F+
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA---- 103
Query: 961 LSPE---VDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELV 1014
+ D + + + + ME V L+ + P LS +++R+ IA +V
Sbjct: 104 --VKNFYPDRDPVPL-VKKAMEFVGLDFDSFKDRV----P--FFLSGGEKRRVAIASVIV 154
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074
P I+ +DEP GLD ++R V G+TV+ H + D + ++++
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK 213
Query: 1075 G 1075
G
Sbjct: 214 G 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 73/260 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L++VS VI G L+ G SGK+TLL +AG ++PT SG V Y+G + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 228 AAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
Q+ ++ V + +AF+ + + K A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA------------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG-----ISGGQKKRVTTGEMMVGP 341
++ +GLD + + +SGG+K+RV
Sbjct: 121 ----------------MEFVGLDF--------DSFKDRVPFFLSGGEKRRV--------- 147
Query: 342 ALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
A+A L +DE GLD ++ + + G VI + +
Sbjct: 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHV 205
Query: 393 DDIILLSDGQIVYQG-PREL 411
D +++L G+ V+ G E
Sbjct: 206 DRVVVLEKGKKVFDGTRMEF 225
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 5e-14
Identities = 98/688 (14%), Positives = 188/688 (27%), Gaps = 201/688 (29%)
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL-TLLLGPPSSGKTTLL 195
+F+ + +D+ + + I SK+ I+ V RL LL S + +
Sbjct: 26 EDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---SKQEEMVQ 80
Query: 196 LALAGKLDPT---LKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSAR 252
+ L L M T YI Q D + V F+
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQV-----FAKY 129
Query: 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVY-MKAIATEGQEANVITDYYLK-VLGLDV 310
V +R + +L R+ ++P ++ + + G K + LDV
Sbjct: 130 --NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS---G-----------KTWVALDV 170
Query: 311 CADTMVGDEMIRGI---SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR 367
C V +M I + T M+ L ++ D S+ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK------ 224
Query: 368 QNIHINSGTAVISLL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCP 424
+ I+S A + L +P + ++ + + + C
Sbjct: 225 --LRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAW------------NAFNLSCK 267
Query: 425 -----KRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479
+ K V DFL T H T E + + + D
Sbjct: 268 ILLTTRFKQVTDFLSAAT-TTHISL--DHHSMTL---TPDEVKSLLLKY-LDCRPQDL-- 318
Query: 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIF--KLIQI--AFVAV 535
P + ++ L+ + E ++ ++ +++ ++ KL I + + V
Sbjct: 319 -PREVLTTNPRRLSI----IA--ESIRDGLAT------WDNWKHVNCDKLTTIIESSLNV 365
Query: 536 VYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF 595
L ++ + F
Sbjct: 366 ------LEPAEYRK------------------------------------MFD--RLSVF 381
Query: 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMAS---- 651
PP A IP L + +W + V N +Y+L+ + ++
Sbjct: 382 PPSA--------HIPTILLSL-IWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIP 429
Query: 652 ALFRFIAVTGRNMVV--ANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQN 709
+++ + V N + + + I D Y+ S
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-------QYFYS------- 475
Query: 710 AIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFA----HEYWYWLGLGALFGFVLLLNF 765
+GH K TL V F H+ W G+ +LN
Sbjct: 476 ------HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS------ILN- 522
Query: 766 AYTLALTFLDPFEKPRAVITEEIESNEQ 793
T + + I + E+
Sbjct: 523 ------TLQQ-LKFYKPYICDNDPKYER 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 3e-13
Identities = 97/702 (13%), Positives = 186/702 (26%), Gaps = 239/702 (34%)
Query: 773 FLDPFEK----------PRAVIT-EEIES-NEQDDRIGGNVQLSTLGGSTDDIRGQQSS- 819
F D F P+++++ EEI+ D + G ++L + +Q
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT------LLSKQEEM 78
Query: 820 -----SQSLS-----LAEAEASRPKKKGMVLPF--EPHSLTFDEVV----YSVDMPEEMK 863
+ L L + ++ M+ E +++ Y+V +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 864 VQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNI---T 919
L L+ L RP + GV G+GKT + +DV K + I
Sbjct: 139 K---LRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 920 ISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 979
+ C + T+ E L ++ P S + +
Sbjct: 189 L--------------KNCNSPE------TVLEMLQ-KLLYQIDPNWTSRSDHSSNIK--- 224
Query: 980 LVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVEL--VANPSIIFMDEPTSGLDARAAAI 1036
+ ++ ++ L L L ++ + L + L V N + + +
Sbjct: 225 -LRIHSIQAELRRL-----LKSKPYENCLLV---LLNVQNAKAW------NAFNLSCKIL 269
Query: 1037 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDE-----LFL----MKRGG---QEIYVGP 1083
+ T R V + T H L L + + + P
Sbjct: 270 L--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 1084 LGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRN 1143
+S I+DG ATW D +H L
Sbjct: 328 R------RLSIIAE-----SIRDG--LATW---------------DNWKHVNCDKLTTII 359
Query: 1144 KALIEDLSRPPPGSKDLY-----FPTQFSQSSWI-QFVACLWKQHWSYWRNPPYTAVRFF 1197
++ + L P + ++ FP S+ I + L W + + V
Sbjct: 360 ESSLNVLE--PAEYRKMFDRLSVFP----PSAHIPTILLSL------IWFDVIKSDVMVV 407
Query: 1198 FTAFIALLFGSLFWDLGGRTKRNQDLFNAMGSMFTAVLFLGVQYCSSVQPIVSVERTVFY 1257
SL ++ + + Y
Sbjct: 408 VNKLHKY---SLV-------EKQPKES---------TISIPSIYLE-------------L 435
Query: 1258 REKAAGMYAGIPWALAQVMIEIPYILVQSVVYGAIVYAMIGFEWTAAKFFWYIFFMYFTL 1317
+ K Y AL + +++ Y + + F+ Y
Sbjct: 436 KVKLENEY-----ALHRSIVD-HYNIPK------------TFDSD--DLIPPYLDQY--- 472
Query: 1318 LFFTFYGMMAVALTPNHHIAAIVSTLFYGLWNVFS------GFIIPRPRIPIWWRWYYWA 1371
F++ G HH+ I +F F+ + R
Sbjct: 473 -FYSHIG---------HHLKNI---EHPERMTLFRMVFLDFRFLEQKIR----------H 509
Query: 1372 NPIAWTLYGLVASQFGDMDDKK---MDTGETVKQFLKDYFDF 1410
+ AW G + + + K D ++ + DF
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 8e-13
Identities = 93/600 (15%), Positives = 170/600 (28%), Gaps = 195/600 (32%)
Query: 58 KGILTTSRGEANEVD-VYNLGLQERQ--RLIDKLVKVTDVDNERFL---LK-----LKNR 106
K IL+ E+D + RL L+ + ++F+ L+ L +
Sbjct: 43 KSILSKE-----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 107 IDRVGIDLPKVEVRY-EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHL 165
I + Y E + N F K+ + + L LR + L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDR------LYNDNQVFAKYNVSRLQPYLK-LR------QAL 144
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTL------------------------------- 194
L+ V+ + G SGKT +
Sbjct: 145 LELRPAKNVL-------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 195 ----LLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH---------DNHIGEM 241
L L ++DP + N + + N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----- 252
Query: 242 TVR--ETL-AFSARCQG-VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
V+ + AF+ C+ + TR++ +T+ I D T + ++
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSL 306
Query: 298 ITDYYLKVLGLDVCADTMVGD---EMIRGISGGQKKRVTTGEMMVGP-ALALFMDEISTG 353
+ LK L D E++ P L++ + I G
Sbjct: 307 L----LKYLDCR------PQDLPREVLTT----------------NPRRLSIIAESIRDG 340
Query: 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD------------- 400
L + ++ VNC + I S +++L+PA E +FD + +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESS---LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 401 GQIVYQGPRELVLEFFA-SMGFRCPKRK--GVADFLQEVTSRKDQR-------------- 443
++ +V + S+ + PK + E+ + +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 444 --------------QYWA-----HKEKPYRFVTVQEFAEAFQSFH-VGQKISDELRTPFD 483
QY+ H + + F F F + QKI + T ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWN 515
Query: 484 KSKSHRAALTT-ETYGVGKRELLKANISRELL-------LMKRNSFVYIFK---LIQIAF 532
S S L + Y K + + E L L K + K L++IA
Sbjct: 516 ASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 5e-11
Identities = 95/603 (15%), Positives = 166/603 (27%), Gaps = 208/603 (34%)
Query: 39 EEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNER 98
EE L+ Y L I T R + +Y ++R RL + DN+
Sbjct: 84 EEVLR-------INYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYN--------DNQV 125
Query: 99 FLLKLKNRIDRVGIDLPKVEVRYEHL-NVEAEAF-------------LASNALPSF---I 141
F K + R L + L + +A + S+
Sbjct: 126 FA---KYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 142 KFYTNIF----------EDILN-----YLRIIP---SKKRHLTILKDVSGVIKPGRLTLL 183
K IF E +L +I P S+ H + +K I+ LL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 184 LGPPSSGKTTLLLALAGKLD---------------PTLKVSGTVTYNGHDMDEFVPQRTA 228
P + LL+ L L +T + +F+ T
Sbjct: 239 KSKP--YENCLLV-----LLNVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAATT 286
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
+IS + + +T E + + + R + L + P + I
Sbjct: 287 THISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDL-----PREVLTTNP-----RRLSII 333
Query: 289 ATEGQEANVITDYYLKVLG------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
A ++ D + V ++ + + E +K
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD--------R 377
Query: 343 LALFMDE--ISTGL--------DSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETY- 389
L++F I T L S +VN L + SL+ QP T
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTIS 427
Query: 390 --DLFDDIILLSDG------QIV--YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSR 439
++ ++ + + IV Y P+ F +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKT---------------------FDSDDLIP 466
Query: 440 KDQRQYWA-----HKEKPYRFVTVQEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALT 493
QY+ H + + F F F + QKI + T ++ S S L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 494 T-ETYG------VGKRELL-----------KANISR-------ELLLMKRNSFVYIFKLI 528
+ Y K E L + N+ + LM + ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 529 QIA 531
Q+
Sbjct: 586 QVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 1e-10
Identities = 98/669 (14%), Positives = 193/669 (28%), Gaps = 221/669 (33%)
Query: 401 GQIVYQGPRELVLEFFASM--GFRCPKRKGVADFLQEVTSRKD--------------QRQ 444
G+ YQ ++++ F + F C K V D + + S+++ R
Sbjct: 12 GEHQYQY-KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 445 YWAHKEKPYRFVTVQEFAEAFQSFHVG---QKISDELRTPFDKSKSHRAALTTETYGVGK 501
+W K VQ+F E + I E R P ++ T Y + +
Sbjct: 68 FWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRMY-IEQ 115
Query: 502 RELL--------KANISRELLLMK-RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552
R+ L K N+SR +K R + + +L V + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGV-------------- 158
Query: 553 DGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA----YAIPSWILK 608
G +G T+ A+ + + DF+ F W P +L+
Sbjct: 159 -LG--SGKTWVALDVCLSYKVQ-------------CKMDFKIF--WLNLKNCNSPETVLE 200
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
+ Y + + + R + L ++ + + L R + ++ N
Sbjct: 201 MLQKL----------LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLL----KSKPYEN 245
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYW---CSPLTYAQNAIVAN---------EF 716
LLVL +++ W + C L + V +
Sbjct: 246 -----CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 717 LGHSWKKFTQDSSETLGVQVLKS------------------------RGFFAH-EYWYWL 751
L H T D ++L ++ L R A + W +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 752 GLGALFGFVLLLNFAYTLALTFLDP------------FEK----PRAVIT---EEIESNE 792
L +L L+P F P +++ ++ ++
Sbjct: 351 NCDKL-------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 793 QDDRIGGNVQLSTLGGSTD-----------DIRGQQSSSQSLSLAEAEASRPKKKGMVLP 841
+ + S + +++ + + +L + + K
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT----- 458
Query: 842 FEPHSLT---FDEVVYS--------VDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA- 889
F+ L D+ YS ++ PE M ++V L+ FR L
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-----LFRMVFLD-----FR--FLEQK 506
Query: 890 --LMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 946
+ ++++ L + YI N Y + E+N I S +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKY 564
Query: 947 VTIYESLLF 955
+ L
Sbjct: 565 TDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 3e-08
Identities = 69/357 (19%), Positives = 110/357 (30%), Gaps = 113/357 (31%)
Query: 21 WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQE 80
N + AF+ S + IL T+R D +
Sbjct: 254 QNAKAWNAFNLSCK-------------------------ILLTTR-FKQVTDFLSAATTT 287
Query: 81 RQRLIDKLVKVTDVDNERFLLK-LKNRIDRVGIDLPKVEV-------------------- 119
L + +T + + LLK L R DLP+ +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 120 --RYEHLNVEA-----EAFLASNALPS--FIKFYTN--IFEDILNYLRIIPSKKRHLTIL 168
++H+N + E+ L N L + K + +F + IP+ L+++
Sbjct: 344 WDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAH----IPTIL--LSLI 395
Query: 169 ------KDVSGVI-KPGRLTLLLGPPSSGKTT---LLLALAGKLD--PTLKVSGTVTYN- 215
DV V+ K + +L+ P + + L L KL+ L S YN
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 216 --GHDMDEFVPQRTAAYISQHDNHIG------EMTVRET--------LAF--------SA 251
D D+ +P Y +HIG E R T F S
Sbjct: 456 PKTFDSDDLIPPYLDQYFY---SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIAT--EGQEANVITDYYLKVL 306
G+ L +L + K DP + + AI E N+I Y +L
Sbjct: 513 AWNASGSILNTLQQL-KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 4e-13
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 927
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 928 ------ETFARISGYCEQNDIH------------SPFVTIYESLLFSAWLRLSPEVDSET 969
TF Q + ES L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 970 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
+ +++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1030 DARAAAIVMRTVRNTVDTGRTVV 1052
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 52/212 (24%), Positives = 76/212 (35%), Gaps = 41/212 (19%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L G V + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y I Q + EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
M A + L+ L L D G+ +SGGQ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+M P + + MDE G+ I N + +
Sbjct: 168 LMTNPKM-IVMDEPIAGVAPGLAHDIFNHVLE 198
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 35/202 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPKKQETFA 931
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 932 RISGYCEQNDIHSPFVTIYESLL--FSAW------LRLSPEVDSETRKMFIDEVMELVEL 983
R N FV + L+ +A + + E ++ L+
Sbjct: 80 R-------NR-KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKER----GEYLLSE 127
Query: 984 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
+GL LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 -------LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 1039 RTVRNTVDTGRTVVCTIHQPSI 1060
+ G ++V H+ +
Sbjct: 181 DIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 58/252 (23%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDE 221
R ILK +S +K G ++G SGK+TLL L G LD PT G V G ++D
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT---EGKVFLEGKEVDY 70
Query: 222 FVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+ + ++ Q I E+T E + G + +E+
Sbjct: 71 TNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-------EAKERG-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ L LGL D + +SGG+++RV
Sbjct: 122 ------------------EYL-------LSELGL---GDKL--SRKPYELSGGEQQRVAI 151
Query: 335 GEMMV-GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ P L LF DE TG LDS+ T ++++ + I+ GT+++ ++ E +L
Sbjct: 152 ARALANEPIL-LFADE-PTGNLDSANTKRVMDIFLK-IN-EGGTSIV-MVTHERELAELT 206
Query: 393 DDIILLSDGQIV 404
+ + DG++V
Sbjct: 207 HRTLEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPK 925
E+ + L V+ + G ++MG SG+GK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 926 KQETFAR---ISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 980
+ T R I G+ Q N I P +T E++ + + E R+ E +++
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 981 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
EL + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 1041 VRN-TVDTGRTVVCTIHQPSI 1060
++ + G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 59/253 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFV 223
+ LK+V+ IK G ++GP SGK+T +L + G LD PT G V + ++
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKPT---EGEVYIDNIKTNDLD 73
Query: 224 PQRTAAY-------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q N I +T E + ++ ++ E+
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL-------IFKYRGAMSGEER----- 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG---DEMIRGISGGQKKRVT 333
+ A E LK+ L + +++ SGGQ++RV
Sbjct: 122 ---------RKRALE----------CLKMAEL---EERFANHKPNQL----SGGQQQRVA 155
Query: 334 TGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
+ P + + D+ T LDS T +I+ L++ ++ G V+ ++
Sbjct: 156 IARALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIV 404
+ II L DG++
Sbjct: 212 GERIIYLKDGEVE 224
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 63/281 (22%), Positives = 102/281 (36%), Gaps = 94/281 (33%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVP- 224
IL+ +S + PG + ++GP SGK+TL LAG+ +V GTV + G D+ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTELARREKAAGIKPD 278
R I +AF Q GV ++ + T L G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRVT 333
D + +L + ++++ G SGG+KKR
Sbjct: 135 DRFDFQDLMEEK------------IALLKMP--------EDLLTRSVNVGFSGGEKKR-- 172
Query: 334 TGE----MMVGPALALFMDEISTGLDSSTTFQI---------VNCLRQNIHINSGTAVIS 380
+ ++ P L + +DE +GLD I VN LR +++
Sbjct: 173 -NDILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVT 221
Query: 381 ----LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L +P D + +L G+IV G LV +
Sbjct: 222 HYQRILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 68/205 (33%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 922
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 923 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--- 962
YP E I G V+ F L+ +
Sbjct: 88 ALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQF---F---LQTALNA 124
Query: 963 -------PEVDSETRKMFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVE 1012
+D + ++E + L+++ L +S+ VG G G ++KR I
Sbjct: 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQM 178
Query: 1013 LVANPSIIFMDEPTSGLDARAAAIV 1037
V P + +DE SGLD A +V
Sbjct: 179 AVLEPELCILDESDSGLDIDALKVV 203
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 68/279 (24%), Positives = 107/279 (38%), Gaps = 94/279 (33%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVP- 224
ILK V+ V+ G + L+GP +GK+TL LAG P V G + +G ++ E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENILELSPD 75
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTEL-ARREKAAGIKP 277
+R + LAF Q GV + L A+ +
Sbjct: 76 ERARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGR------ 111
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRV 332
+ + + + L++L D + + G SGG+KKR
Sbjct: 112 EVGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRN 152
Query: 333 TTGEM-MVGPALALFMDEISTGLDSSTTFQI---------VNCLRQNIHINSGTAVIS-- 380
++ ++ P A+ +DE +GLD I VN +R N G VI+
Sbjct: 153 EILQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHY 202
Query: 381 --LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L QP D + ++ DG++V G EL LE
Sbjct: 203 QRILNYIQP--------DKVHVMMDGRVVATGGPELALE 233
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 9e-06
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 52/199 (26%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 922
+ + +L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 14 DGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENIL 70
Query: 923 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 965
YP E + G VTI L + +L EV
Sbjct: 71 ELSPDERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREV 113
Query: 966 DSETRKMFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1022
+ + +EL++ + L + L G G G ++KR I LV P+ +
Sbjct: 114 GVAEFWTKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVL 167
Query: 1023 DEPTSGLDARAAAIVMRTV 1041
DE SGLD A +V R V
Sbjct: 168 DETDSGLDIDALKVVARGV 186
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 72/222 (32%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 921
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 922 GYPKK---------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 964
G+ Q+ R +I +++ + +P
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLA-----NPG 109
Query: 965 VDSETRKMFIDEVMELVEL-------NPLRQ---SLVGLPGVSGLSTEQRKRLTIAVELV 1014
+ E +V+ +L + LR+ ++VG G LS QR+R+ IA LV
Sbjct: 110 MSVE-------KVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALV 161
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 9e-06
Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 89/267 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL +++ IK G + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q DN + ++ + ++ + P ++
Sbjct: 80 WLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------NPGMSVE 113
Query: 283 VYMKAIATEGQEANV---ITD----YYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVT 333
+ A + A I++ Y +T+VG+ +G SGGQ++R+
Sbjct: 114 KVIYAA----KLAGAHDFISELREGY-----------NTIVGE---QGAGLSGGQRQRI- 154
Query: 334 TGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----S 380
A+A L DE ++ LD + I+ + I +I S
Sbjct: 155 --------AIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 205
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
++ A D II++ G+IV QG
Sbjct: 206 TVKNA-------DRIIVMEKGKIVEQG 225
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 4e-10
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 933
LLN + + G +G GK+TLM +A + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CRT 497
Query: 934 SGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
Y E + D ++ + + E T++ I + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 5e-05
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+ D++ ++GP +GK+TL+ L G+L PT SG V + +
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------C 736
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AYI QH E + +T + + + R++ + ++A + D + K
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPS-----EYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 287 AIATEGQEANVI 298
EG +
Sbjct: 792 IFKIEGTPRRIA 803
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 39/242 (16%)
Query: 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 905
++ F +V +S + L ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 906 AGRKTGGY-ITGNITISGYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFS 956
R Y G+I I G + I G Q N+ TI ++L+
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG 116
Query: 957 AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELV 1014
EV T+ + + + L P + ++VG G+ LS +R+R+ IA L+
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEAL----PKKWDTIVGNKGMK-LSGGERQRIAIARCLL 171
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074
+P I+ DE TS LD++ + + V + + RT++ H+ S I A + + L+ +
Sbjct: 172 KDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNK 228
Query: 1075 GG 1076
G
Sbjct: 229 GK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 313 DTMVGDEMIRGI--SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQN 369
DT+VG+ +G+ SGG+++R+ ++ P + + DE ++ LDS T + + +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVE-D 200
Query: 370 IHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ N +I S + A + IILL+ G+IV +G
Sbjct: 201 LRKNRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 7e-10
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 40/219 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 927
L VS PG AL+G SGAGK+T++ D+ +G I I G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 928 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VM 978
T A G Q ND TI +++ + + EV++ + I + +M
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174
Query: 979 ELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
P ++ VG G+ LS +++R+ IA ++ P II +DE TS LD +
Sbjct: 175 AF----PEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076
++ V RT + H+ S + A D++ ++K G
Sbjct: 230 QASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 9e-10
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 58/227 (25%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 926
L G++ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 927 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 970
QE FA TI E++ + E++ +
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYGREDVTMDEIEKAVK 501
Query: 971 KMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028
+ + +M+L P + +LVG G LS Q++R+ IA LV NP I+ +DE TS
Sbjct: 502 EANAYDFIMKL----PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
LD + A+V + GRT + H+ S + A D + G
Sbjct: 557 LDTESEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 927
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 928 ETFARISGYCEQNDIHS--PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 982
+ Q I S P + +I E++ + R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 983 LNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
++ SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1036 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+V + + GRT + H+ S I A D + +++ G
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 65/308 (21%), Positives = 102/308 (33%), Gaps = 120/308 (38%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L ++ I G L ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ AY+ Q I ++RE + F G + E
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
YY V + CA T +G+ +G+ SGGQK+RV
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV--- 378
+LA LF D +S +D+ I N + + + T +
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 379 --ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
+S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 437 TSRKDQRQ 444
S
Sbjct: 230 ASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 933 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 987
++ Y Q ++ ++ E++LF + + + V++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 988 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 1041
++ +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 1042 -RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 2e-09
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 927
L +S +P + A G SG GK+T+ AG ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 928 ETFA----RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSP-EVDSETRKMFIDE-VM 978
+ +I G+ Q+ + TI E+L + + ++ F V
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 979 ELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
+ + LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 124 NMPDQLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1038 MRTVRNTVDTGRTVV 1052
+ + +++ GRT +
Sbjct: 179 QKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 9e-08
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 58/251 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL+D+S +P + GP GK+T+ L PT +G +T +G +D +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73
Query: 226 -RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG-IKPDPDID 282
R+ ++SQ D+ I T+RE L + G T ++ ++ A ++ PD
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTYGLE--GDYTDEDLW-QVLDLAFARSFVENMPD-- 127
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVG 340
L +T VG+ RG+ SGGQ++R+ +
Sbjct: 128 ------------------------QL----NTEVGE---RGVKISGGQRQRLAIARAFLR 156
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDII 396
L +DE + LDS + + L ++ T VI S + A D I
Sbjct: 157 NPKILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLSTIVDA-------DKIY 208
Query: 397 LLSDGQIVYQG 407
+ GQI G
Sbjct: 209 FIEKGQITGSG 219
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 60/295 (20%), Positives = 101/295 (34%), Gaps = 100/295 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---F 222
+L D+S + PG + ++G GKTTLL LAG P SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+P +R Y+ Q H +TV +A+ T + +R +A
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEAM- 122
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
L++ G+ A +SGGQ++R
Sbjct: 123 ----------------------------LELTGISELA-----GRYPHELSGGQQQRA-- 147
Query: 335 GEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385
ALA + +DE + LD QI + +G + + +
Sbjct: 148 -------ALARALAPDPELILLDEPFSALDEQLRRQIREDMIA-ALRANGKSAVFV---- 195
Query: 386 PETYD------LFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++D D I ++ G+I+ P EL +R P A F+
Sbjct: 196 --SHDREEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 8e-07
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
LN +S + PG + ++G SG GKTTL+ LAG + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 932 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
R GY Q P +T+Y ++ + R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 990 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+K + + G++ L+G +GKTT L A+AG + G + +NG D+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFSAR-CQGVGTRYEMLTEL-----ARREKAA 273
A + + E+TV E L A++ + +G+ E + L R ++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 274 G 274
G
Sbjct: 138 G 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 926
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 927 QETFARISGYCEQNDIHSP-----F--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 979
I+ P F +T+YE+L+ A+ R D E K ++ +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 980 LV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
L L + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1039 RTVRNTVDTGRTV 1051
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 889 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSP 945
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 946 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005
+++Y ++ + LR V+ + R + E+ E + + L + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1006 RLTIAVELVANPSIIFMDEPTSGLDAR 1032
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 75/183 (40%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQ------HD 235
LLGP +GK+ L +AG + P G V NG D+ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
++V +A+ G R E RR +
Sbjct: 85 -----LSVYRNIAY-------GLRNVERVERDRRVREM---------------------- 110
Query: 296 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA---------LF 346
+ LG+ + D +SGG+++RV ALA L
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRV---------ALARALVIQPRLLL 149
Query: 347 MDE 349
+DE
Sbjct: 150 LDE 152
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 45/213 (21%), Positives = 73/213 (34%), Gaps = 63/213 (29%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 926
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 927 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 970
QE F R + E++ + + E +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGLTRTPTMEEITAVA 130
Query: 971 KM-----FIDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024
FI P + VG G LS QR+ + +A L+ P ++ +D
Sbjct: 131 MESGAHDFI---SGF----PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDN 182
Query: 1025 PTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1056
TS LDA V R + + RTV+
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 59/274 (21%), Positives = 97/274 (35%), Gaps = 100/274 (36%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL-DPTLKVSGTVTYNGHDMDEFVP 224
+L+ ++ + PG++T L+GP SGK+T + AL L PT G V +G + ++
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPT---GGKVLLDGEPLVQYDH 88
Query: 225 Q---RTAAYISQHDNHIGE-----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
A + Q E + RE +A+ T E+ A
Sbjct: 89 HYLHTQVAAVGQ------EPLLFGRSFRENIAYG--LTRTPTMEEI-------TAVA--- 130
Query: 277 PDPDIDVYMKAIATEGQEANV---ITD----YYLKVLGLDVCADTMVGDEMIRGI--SGG 327
E+ I+ Y DT VG+ G SGG
Sbjct: 131 ----------------MESGAHDFISGFPQGY-----------DTEVGE---TGNQLSGG 160
Query: 328 QKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378
Q++ V ALA L +D ++ LD+ ++ L ++ S T +
Sbjct: 161 QRQAV---------ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 379 I-----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ SL + A I+ L +G + QG
Sbjct: 212 LITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 47/197 (23%), Positives = 71/197 (36%), Gaps = 67/197 (34%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
++ VS I+ G + LLGP SGKTT+L +AG PT G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 QRTAAYISQHD---NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q+ H MTV + ++F R + V E+ R +
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL-------- 129
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
L+ + L+ + +SGGQ++RV
Sbjct: 130 ---------------------LRFMRLE-----SYANRFPHELSGGQQQRV--------- 154
Query: 342 ALA---------LFMDE 349
ALA L DE
Sbjct: 155 ALARALAPRPQVLLFDE 171
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
R G QN +T+Y+++ F + P+ + + R + E++ + L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 114/272 (41%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G + ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ + I T++E + F G Y+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVI-- 379
+LA L LD T +I +C+ + + I
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESCVCKLMA---NKTRILV 186
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
L+ A D I++L +G + G
Sbjct: 187 TSKMEHLKKA-------DKILILHEGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 933 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 989
IS +C Q ++ TI E+++F + V++ +L
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 990 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1043 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +T + + ++ + D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 58/302 (19%), Positives = 102/302 (33%), Gaps = 89/302 (29%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
R + L +VS + G++ ++G +GK+TL+ + PT G+V +G +
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 91
Query: 219 MDEFVPQRTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 144
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
+ L ++GL D+ + +SGGQK+RV
Sbjct: 145 TEL---------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 172
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGT----------- 376
+ ALA L D+ ++ LD +TT I+ L+ IN
Sbjct: 173 A-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITHEM 224
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
V+ + D + ++S+G+++ Q V E F+ PK F+Q
Sbjct: 225 DVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQST 267
Query: 437 TS 438
Sbjct: 268 LH 269
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 932 RIS-GYCEQ--NDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 986
R G Q N + S T++ ++ L L P+ + + R V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELDNTPKDEVKRR------VTELLSL--- 150
Query: 987 RQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ----VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 31/201 (15%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 928
+L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 929 TFARISGYCEQNDIHSPFVTIY-ESLLFSAWLR--LSP---EVDSETRKMFIDEVMELVE 982
+ F I + +FS R L P D E I +V + V
Sbjct: 83 ---SWDSITLE-QWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE-----IWKVADEVG 133
Query: 983 LNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
L + + G + G LS ++ + +A +++ I+ +DEP++ LD I
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 1037 VMRTVRNTVDTGRTVVCTIHQ 1057
+ RT++ TV+ +
Sbjct: 194 IRRTLKQAF-ADCTVILCEAR 213
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 52/278 (18%), Positives = 95/278 (34%), Gaps = 116/278 (41%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G + ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ ++ I T++E + +G Y+
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYD------------------------- 125
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 126 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 168
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVI-- 379
+LA L LD T +I +C+ + + + I
Sbjct: 169 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILV 215
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP-RELV 412
L+ A D I++L +G + G EL
Sbjct: 216 TSKMEHLKKA-------DKILILHEGSSYFYGTFSELQ 246
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 42/213 (19%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 933 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 987
IS +C Q + ++ TI E+++ ++ D V++ +L +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 988 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1043 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ +T + + ++ + D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 76/200 (38%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L ++S ++ G ++LGP +GKT L +AG P SG + +G D+ + P
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 225 QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ A++ Q H M V++ L F R + + ++
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI----------KDPKRVL----- 109
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ + L ++ + D +SGG+++RV
Sbjct: 110 ---------------DT-------ARDLKIE-----HLLDRNPLTLSGGEQQRV------ 136
Query: 339 VGPALA---------LFMDE 349
ALA L +DE
Sbjct: 137 ---ALARALVTNPKILLLDE 153
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 7e-06
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSL 990
+ QN P + + ++L F +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 991 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 38/179 (21%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNITIS 921
K+V L+ V+ G ++G SGAGKTT M ++AG + G + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 922 GYPKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 978
P+ ++ F Q P +T +E++ F + + R ++EV
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 979 ELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 48/285 (16%), Positives = 94/285 (32%), Gaps = 86/285 (30%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L +V+ I+ G +LGP +GKTT + +AG P+ +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 226 RTAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
D IG +T E +AF +
Sbjct: 76 IVPP----EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------- 112
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
+I ++ +A K+L + V + R +SG Q++RV
Sbjct: 113 -SKEEIRKRVEEVA--------------KILDI-----HHVLNHFPRELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDEISTGLDS----STTFQIVNCLRQNIHINSGTAVISLLQPAPETYD- 390
+V L +DE + LD+ S + + + G ++ + ++D
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMRDSARALV-----KEVQSRLGVTLLVV------SHDP 201
Query: 391 -----LFDDIILLSDGQI--------VYQGPREL-VLEFFASMGF 421
+ D + +L G++ +Y P + V +
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 9e-07
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 57/191 (29%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 921
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 922 GYPKK---------------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--- 963
G+ K Q+ S T+ E++L R +
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATDE 445
Query: 964 EVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1021
EV + + +M L P + VG GV LS Q++RL+IA + NP I+
Sbjct: 446 EVVEAAKMANAHDFIMNL----PQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 500
Query: 1022 MDEPTSGLDAR 1032
+DE TS LD
Sbjct: 501 LDEATSALDLE 511
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 921
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 922 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKM 972
G+ + R Q ND TI ++ ++A + E ++ R+
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAAEGEYTREQIEQAARQA 457
Query: 973 FIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
E + + P +++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 458 HAMEFIENM----PQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 1031 AR 1032
Sbjct: 513 TE 514
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 999 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1053 CTIHQPSIDIFEAFDELFLMKRGGQEIYV 1081
H ++ +A D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 927
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 928 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKMFIDE-V 977
T A Q ND T+ ++ ++ S E ++ R + + +
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYARTEEYSREQIEEAARMAYAMDFI 463
Query: 978 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
++ +++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 464 NKM----DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 923
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 924 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 979
PK + F QN P +T+Y+++ F LR +P + + + + EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 980 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 1037
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 1038 MRT 1040
+R
Sbjct: 172 VRA 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 63/195 (32%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +++ IK G LLGP SGK+TLL +AG PT SG + ++ D+ E P+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
R + Q H MTV + +AF + P
Sbjct: 74 DRNVGLVFQNWALYPH------MTVYKNIAFPLELRKA--------------------PR 107
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI----RGISGGQKKRVTT 334
+ID ++ +A K+L + D+++ +SGGQ++RV
Sbjct: 108 EEIDKKVREVA--------------KMLHI---------DKLLNRYPWQLSGGQQQRVAI 144
Query: 335 GEMMVGPALALFMDE 349
+V L +DE
Sbjct: 145 ARALVKEPEVLLLDE 159
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 890 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQE---TFARISGYCEQ 939
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 940 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 999
+ P +T+YE++ F ++ P+ + + R + EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1040
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 44/188 (23%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 923
K+ ++GVS + G AL+G SG GKTT + +LAG T G I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 924 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 979
PK +E F QN P +T++E++ F R + + E R + E+
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIAR 119
Query: 980 LVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 1032
+ ++ L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 120 KLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 1033 AAAIVMRT 1040
MR
Sbjct: 170 MI---MRA 174
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1064
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1065 AFDELFLMKRGGQEIYVGPLG 1085
A D + I +
Sbjct: 128 AADHV---------IRISLEN 139
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1445 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-22 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-18 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-25 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-18 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 8e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-20 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-19 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-15 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-05 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 7e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 1e-04 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 1e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 6e-04 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.002 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.003 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 114 bits (287), Expect = 7e-29
Identities = 56/271 (20%), Positives = 98/271 (36%), Gaps = 54/271 (19%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
T + ++ IK G +LLGP GKTT L +AG +PT G + + D+ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP-------------------------- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
E + + ++L ++ + +SGGQ++RV +V
Sbjct: 110 --------KDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE + LD+ + +++ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ G P E+ + P VA F+
Sbjct: 216 LQIGSPTEV---------YLRPNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (269), Expect = 1e-26
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 23/213 (10%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 927
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 928 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
R Q+ P +T+YE++ F ++ + + + EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1045
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1046 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
T + H D EA D + +M RG
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 3e-28
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 863 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 919
K + E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 920 ISGYPKKQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 977
+ + T R G+ Q P +T E++ + + E R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 978 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1037
+++ EL + P + LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 1038 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
M+ ++ + G+TVV H I++ + + +K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 95.3 bits (237), Expect = 2e-22
Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+ + LK+V+ IK G ++GP SGK+T+L + PT G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MDEFVPQRTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
++ ++ Q N I +T E + + G ++ RR++
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKR 124
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A + + A+ +SGGQ++R
Sbjct: 125 AL--------------------------ECLKMAELEERFANHKPNQ-----LSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
V + + D+ + LDS T +I+ L++ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (277), Expect = 2e-27
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 8/208 (3%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 992
Q +T+ E+LL ++S K +I + E+VE +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 993 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T + H+ + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (261), Expect = 2e-25
Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L G V + D+ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 ----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Q + EMTV E L C G + + ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-------- 125
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
E L+ L L D G+ +SGGQ K V G ++
Sbjct: 126 -------------EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
+ MDE G+ I N + + G + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (272), Expect = 5e-27
Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 932
+ G+ G + L+G +GAGKTT + +AG R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 933 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLV 991
+ P +T+YE+L+ A+ R D E K ++ + L L + L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
G LS +++ L I L++ P ++ MDEP+ GL + V ++ G T+
Sbjct: 138 G-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 1052 VCTIHQPSIDIFEAF---DELFLMKRG 1075
+ + A ++++ G
Sbjct: 193 LLVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 83.8 bits (207), Expect = 2e-18
Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-LKVSGTVTYNGHDMDEFV 223
+ +K + + G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ A + + E+TV E L A + + E
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWI----------- 122
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ L + G +SGG+++ + G ++
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE S GL ++ +++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 104 bits (261), Expect = 3e-25
Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 46/263 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
ILKD++ I+ G +G GK+TL+ + D T SG + +GH++ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 222 FVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
F+ I Q DN + TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF- 136
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
++ L DT VG E +SGGQK+R++ + +
Sbjct: 137 -------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFL 170
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DE ++ LD + I L ++ + ++ T D I+++
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIE 226
Query: 400 DGQIVYQGPRELVLE---FFASM 419
+G IV G ++ + +
Sbjct: 227 NGHIVETGTHRELIAKQGAYEHL 249
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 91.8 bits (228), Expect = 6e-21
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 21/238 (8%)
Query: 840 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 900 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTIYESLLFSA 957
TL++++ +G I I G+ K + Q D T+ E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 958 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017
EV + + + L + VG GV LS Q++RL+IA + NP
Sbjct: 117 PTATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNP 173
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
I+ +DE TS LD + +I+ + + RT + H+ S D++ +++ G
Sbjct: 174 PILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 14/218 (6%)
Query: 863 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 919
KV + LN VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 920 ISGYPKKQETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 978
++ + + T AR G Q+ T++ ++ L +P+ + + R + E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 979 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
LV L S S LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 1039 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+++ G T++ H+ + + D + ++ G
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 101 bits (254), Expect = 1e-24
Identities = 52/280 (18%), Positives = 97/280 (34%), Gaps = 57/280 (20%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
R + L +VS + G++ ++G +GK+TL+ + PT G+V +G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MDEFVPQRTA------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 121
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
L ++GL D+ + +SGGQK+RV
Sbjct: 122 ---------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ L DE ++ LD +TT + + L ++I+ G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATT-RSILELLKDINRRLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADF 432
D + ++S+G+++ Q V F PK F
Sbjct: 209 DCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (257), Expect = 9e-25
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 932 RIS-----------GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 980
Q+ +T+ E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 981 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1041 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
++ + G+T+V H ++ A + + +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 94.5 bits (235), Expect = 7e-22
Identities = 59/300 (19%), Positives = 107/300 (35%), Gaps = 68/300 (22%)
Query: 153 NYLRIIPSKKR--HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG 210
N L +I KR +LK VS + G + ++G SGK+T L + P+ G
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EG 57
Query: 211 TVTYNGHDMDEFVPQ----------------RTAAYISQHDNHIGEMTVRETLAFSARCQ 254
+ NG +++ + + QH N MTV E + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-- 115
Query: 255 GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314
+ L++ RE+A YL +G+D A
Sbjct: 116 ----QVLGLSKHDARERA---------------------------LKYLAKVGIDERAQ- 143
Query: 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+ +SGGQ++RV+ + L DE ++ LD +++ ++Q
Sbjct: 144 ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ--LAEE 198
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
G ++ + + +I L G+I +G E + F + P+ + FL+
Sbjct: 199 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (253), Expect = 2e-24
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 927
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 928 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
++ Y + + E L F A S + E ++ E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 94.3 bits (234), Expect = 5e-22
Identities = 55/276 (19%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
ILK +S I+ G + L+GP +GKTT L ++ + P+ SG VT G ++ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 Q--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ + +Y+ + M E L F A +
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 109 -----------EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE ++GLD ++ L+Q G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEVT 437
IV G EL K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (250), Expect = 2e-24
Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994
+ + I +++ + L A L K I + +E VE+ L++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK----- 122
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1053
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1054 TIHQPSI 1060
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 83.0 bits (205), Expect = 2e-18
Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 48/221 (21%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S +L+ ++ I+ G + GP GKTTLL ++ L P G + YNG +
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + ++ + +++V + L A GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------- 110
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
L+ + + + +S G +RV ++
Sbjct: 111 -----------------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLL 141
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
A +D+ +D + +++ + + I G +IS
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (252), Expect = 7e-24
Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 934
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 935 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 994
+C Q P TI E+++F E ++ ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1054
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1055 IHQPSIDIFEAFDELFLMKRG 1075
+ D++ ++ +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.2 bits (247), Expect = 3e-23
Identities = 50/281 (17%), Positives = 93/281 (33%), Gaps = 60/281 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LK+++ I+ G + + G SGKT+LL+ + G+L+ + G + ++G F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVS--FCSQ- 104
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ I T++E + F KA ++
Sbjct: 105 --------FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQ---------- 138
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
+ +T++G E +SGGQ+ R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+D LD T Q+ + N +++ E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFY 238
Query: 407 G-PREL-------VLEFFASMGFRCPKRKGVADFLQEVTSR 439
G EL + F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.3 bits (242), Expect = 8e-23
Identities = 50/264 (18%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
+ + +L+ ++ ++PG +T L+GP SGK+T+ L PT G + +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 222 FVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ + R A + Q + + +++E +A+ G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
P ++ A G + GL DT V + + +SGGQ++ V +
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
+ L +D+ ++ LD+++ Q+ L ++ S + ++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 399 SDGQIVYQGPRELVLE---FFASM 419
G I G + ++E + +M
Sbjct: 225 EGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.7 bits (225), Expect = 1e-20
Identities = 49/244 (20%), Positives = 98/244 (40%), Gaps = 22/244 (9%)
Query: 837 GMVLPFEPH-SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSG 895
G++ P + F +V ++ ++ V L G++ RPG +TAL+G +G
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNG 50
Query: 896 AGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 952
+GK+T+ +L + TGG + + Y + R Q ++ E+
Sbjct: 51 SGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQEPQVFGR-SLQEN 107
Query: 953 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 1012
+ + + + E + + P S LS QR+ + +A
Sbjct: 108 IAYGLTQKPTMEEITAAAVK--SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165
Query: 1013 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 1071
L+ P ++ +D+ TS LDA + V + + + + R+V+ S + E D +
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILF 223
Query: 1072 MKRG 1075
++ G
Sbjct: 224 LEGG 227
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 96.8 bits (241), Expect = 1e-22
Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 13/205 (6%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFA 931
L ++ G AL+G SG+GK+T+ ++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSL 990
QN +++ R + M+ + ++
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
+G G LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRT 203
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
+ H+ S E DE+ +++ G
Sbjct: 204 SLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 90.7 bits (225), Expect = 2e-20
Identities = 48/264 (18%), Positives = 100/264 (37%), Gaps = 47/264 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
R + L++++ I G+ L+G SGK+T+ + D G + +GHD+ E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 222 FVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ + A +SQ+ + + T ++ + A
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ +D DT++G E +SGGQ++R+ +
Sbjct: 135 --------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARAL 167
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
+ + L +DE ++ LD+ + I L + + + ++ T + D+I+++
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVV 223
Query: 399 SDGQIVYQGPRELVLE---FFASM 419
DG IV +G +L +A +
Sbjct: 224 EDGIIVERGTHSELLAQHGVYAQL 247
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 95.4 bits (237), Expect = 2e-22
Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 27/211 (12%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 931
L +SG R G + L+G +GAGK+TL+ +AG +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
Y Q ++ L + TR +++V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 992 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1045 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G +V + H + +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 85.8 bits (212), Expect = 5e-19
Identities = 49/259 (18%), Positives = 83/259 (32%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG + G++ + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
L +DE LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 93.8 bits (233), Expect = 8e-22
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---K 925
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 985
R G Q D +I +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
GRTV+ H+ S + D + +M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 87.7 bits (217), Expect = 1e-19
Identities = 54/251 (21%), Positives = 94/251 (37%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL +++ IK G + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + Q DN + ++ + ++ + V ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSV-------EKVIYAAKLAGA-------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ + E G+SGGQ++R+ +V
Sbjct: 119 -------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L DE ++ LD + I+ + + I G VI + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 404 VYQGPRELVLE 414
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 3e-21
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 19/211 (9%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 929
++V+ ++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 930 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 988
A G Q+ P +++ E++ F L + + R +++V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1047
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1048 GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
GRT++ H D EA D++ ++ G
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 56/272 (20%), Positives = 96/272 (35%), Gaps = 54/272 (19%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+ + KD++ I G + +GP GK+TLL +AG T SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PQRTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P + Q ++V E ++F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQRV---------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ +VL L D +SGGQ++RV G +V
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE + LD++ + +H G +I + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ G P EL + P + VA F+
Sbjct: 209 VAQVGKPLEL---------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 91.5 bits (227), Expect = 7e-21
Identities = 54/259 (20%), Positives = 87/259 (33%), Gaps = 45/259 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+D+S +P + GP GK+T+ L PT +G +T +G +D +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ I D+ I T+RE L + + +LA PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+T VG E ISGGQ++R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LDS + + L + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE---FFASM 419
G ++ +A
Sbjct: 216 TGSGKHNELVATHPLYAKY 234
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.8 bits (215), Expect = 2e-19
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 11/204 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 931
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 932 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 991
G+ Q+ TI E+L + + E + + VE P + +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTE 132
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GRT
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTT 191
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRG 1075
+ H+ S D+++ +++G
Sbjct: 192 LVIAHRLS--TIVDADKIYFIEKG 213
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 87.4 bits (216), Expect = 1e-19
Identities = 56/276 (20%), Positives = 105/276 (38%), Gaps = 57/276 (20%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S+K L ++S ++ G ++LGP +GKT L +AG P SG + +G D+
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 220 DEFVPQR-TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P++ A++ Q+ + M V++ L F R + + ++
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKRVLDT--- 111
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ L ++ D +SGG+++RV +
Sbjct: 112 ------------------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARAL 142
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + LD T + + +H + V+ + E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201
Query: 399 SDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
DG+++ G P E+ F P VA F+
Sbjct: 202 MDGKLIQVGKPEEI---------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.9 bits (181), Expect = 5e-15
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 16/203 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARI 933
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 934 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 993
+ QN P + + ++L F ++ + + +++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1052
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1053 CTIHQPSIDIFEAFDELFLMKRG 1075
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.3 bits (216), Expect = 2e-19
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 926
++ + +S + G L+G SG GKTT + ++AG + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 927 QETFARISG--YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 984
+ Q+ P +T+Y+++ F LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 985 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1045 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1075
G T + H D EA D + +M RG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 83.1 bits (205), Expect = 5e-18
Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 58/277 (20%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+T ++++S +K G +LLGP GKTT L +AG +P+ G + + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q MTV + +AF + + V + ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV---- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
++LGL + + +SGGQ++RV G
Sbjct: 121 -----------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+V MDE + LD + + + + G I + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
Query: 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
+++ G + G + V + P VA F+
Sbjct: 212 VMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.7 bits (214), Expect = 2e-19
Identities = 50/280 (17%), Positives = 98/280 (35%), Gaps = 59/280 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KK + L +V+ I+ G +LGP +GKTT + +AG P+ +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 221 EFVPQ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
R + Q +T E +AF +++ R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-------KMSKEEIRKRV-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ K+L + + R +SG Q++RV
Sbjct: 122 -------------------------EEVAKILDIHHVLNH-----FPRELSGAQQQRVAL 151
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE + LD+ L + + G ++ + + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVVSHDPADIFAIADR 210
Query: 395 IILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ +L G++V G P +L + P VA +
Sbjct: 211 VGVLVKGKLVQVGKPEDL---------YDNPVSIQVASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.5 bits (211), Expect = 6e-19
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 928
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 929 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 986
R G Q P +T +E++ F ++ E + ++EV ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 987 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1045
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T++ H P+ DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 75.4 bits (185), Expect = 2e-15
Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 55/259 (21%)
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA-AYISQH 234
+LLGP +GK+ L +AG + P G V NG D+ P+R ++ Q
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQD 78
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQE 294
++V +A+ R R + E+
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------------- 110
Query: 295 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354
+ + D +SGG+++RV +V L +DE + +
Sbjct: 111 -------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157
Query: 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
D T ++ LR + ++ + E L D++ ++ +G+IV +G + E
Sbjct: 158 DLKTKGVLMEELRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK---E 213
Query: 415 FFASMGFRCPKRKGVADFL 433
F+ K VA+FL
Sbjct: 214 LFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.0 bits (171), Expect = 1e-13
Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 884 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 940
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 941 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000
P +++Y ++ + V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1059
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1060 IDIFEAFDELFLMKRG 1075
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 23/201 (11%), Positives = 44/201 (21%), Gaps = 42/201 (20%)
Query: 889 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 945
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 946 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005
+ + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1065
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1066 FDELFLMKRGGQEIYVGPLGR 1086
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 5/104 (4%)
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYISQHDNHIG 239
++ G P GKTTL+ + +L + E +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ V E+ + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 44.3 bits (104), Expect = 7e-05
Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 15/148 (10%)
Query: 79 QERQRLIDKLVKVTDVDNERFLLKLKN--RIDRVGIDLPKVEVRYEHLNVEAEAFLASNA 136
++++ N KN I + +D + R + L + E L +
Sbjct: 41 IKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRF 100
Query: 137 LP----SFIKFYTNIFEDILNYLRIIPS--------KKRHLTILKDVSGVIKPGRLTLLL 184
I F + DI ++ + LK + I R L
Sbjct: 101 NDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160
Query: 185 GPPSSGKTTLLLALAGKLD-PTLKVSGT 211
GP SGKTTL AL L V+
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNLP 188
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 22/152 (14%)
Query: 939 QNDIHSPFVTIYESLL-----------FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 987
+ + IY L +A L + E + + L +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 988 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1048 GRTVVCTIHQPSIDIFEAFDELF---LMKRGG 1076
+ + +FE D L ++
Sbjct: 386 DLQFIVISLKN--TMFEKSDALVGVYRQQQEN 415
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 2/127 (1%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLL--ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA 229
G I+ G +T + G +GKT + A+ +L F P+R A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
++ ++ A + + + + A + D +Y +
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGQEAN 296
G+ +
Sbjct: 137 GRGELSA 143
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 3/137 (2%)
Query: 185 GPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244
+GKTTLL L L H + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
+ A E+ + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLDVCADTMVGDEMI 321
L +D + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 39.3 bits (90), Expect = 0.002
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYI 231
G ++ +T G SGKT ++ L V Q A YI
Sbjct: 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL---QNPEFLFYDEEAVSKGEVAQPKAVYI 84
Query: 232 S 232
Sbjct: 85 D 85
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.003
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTA 228
G ++ G +T L G +GK+ L LA G Y + F P R
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT-FRPVRLV 86
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
+ + + A + + ++ + + I D + +Y
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.004
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202
+ G + L+ P +GK+ L L LA ++
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLAAQI 53
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1445 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.46 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.35 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.28 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.12 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.88 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.87 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.8 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.43 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.35 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.85 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.8 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.67 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.66 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.51 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.48 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.31 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.3 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.22 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.13 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.0 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.95 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.93 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.83 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.82 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.82 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.74 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.69 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.69 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.68 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.63 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.61 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.6 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.58 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.57 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.57 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.53 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.48 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.47 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.47 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.46 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.43 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.42 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.41 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.39 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.39 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.38 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.37 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.36 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.34 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.31 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.3 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.26 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.25 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.24 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.22 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.2 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.16 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.14 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.13 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.12 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.08 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.05 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.04 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.02 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.01 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.99 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.98 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.96 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.92 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.91 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.88 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.87 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.85 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.85 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.84 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.83 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.82 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.82 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.79 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.78 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.77 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.76 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.74 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.7 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.68 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.68 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.67 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.67 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.66 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.65 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.63 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.63 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.62 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.6 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.6 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.59 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.58 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.58 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.52 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.51 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.5 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.49 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.49 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.45 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.42 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.42 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.42 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.41 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.38 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.38 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.38 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.37 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.35 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.35 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.34 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.34 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.32 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.32 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.32 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.31 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.31 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.3 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.3 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.3 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.28 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.27 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.27 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.24 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.24 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.19 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.16 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.16 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.16 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.15 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.15 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.14 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.13 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.09 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.09 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.07 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.07 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.06 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.05 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.0 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.99 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.97 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.94 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.92 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.9 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.87 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.77 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.77 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.75 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.74 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.73 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.68 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.64 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.63 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.61 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.6 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.57 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.53 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.52 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.47 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.46 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.46 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.45 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.44 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.31 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.3 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.3 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.27 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.26 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.25 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.24 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.23 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.16 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.15 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.15 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.11 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.09 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.09 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.04 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.04 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.03 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.02 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.0 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.0 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.95 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.94 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.91 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.9 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.89 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.88 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.88 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.88 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.87 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.85 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.85 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.83 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.83 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.81 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.78 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.75 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.74 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.73 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.62 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.6 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.6 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.6 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.59 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.56 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.51 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.51 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.49 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.49 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.48 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.39 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.3 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.26 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.23 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.22 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.22 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.2 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.2 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.15 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.12 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.1 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.07 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.05 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.01 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.01 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.99 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.96 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.84 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.84 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.81 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.71 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.69 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.69 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.67 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.66 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.62 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.62 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.61 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.57 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.5 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.49 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.48 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.47 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.46 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.46 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.43 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.41 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.39 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.39 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.37 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.35 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.31 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.23 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.2 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.14 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.13 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.13 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.09 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.09 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.08 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.06 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.02 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.0 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.95 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.94 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.85 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.84 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.84 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.8 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.77 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.75 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.75 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.69 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.68 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.65 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.58 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.56 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.52 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.46 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.45 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.38 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.35 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.34 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 91.31 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.29 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.28 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.26 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.26 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.26 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.22 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.21 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.1 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.09 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.09 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.08 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.07 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.02 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.95 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.9 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.84 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.83 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.75 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.73 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.73 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.71 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.69 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.64 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.61 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.58 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.57 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.45 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.43 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.42 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.41 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.38 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.31 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.31 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.27 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.25 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.22 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.21 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.17 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.16 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.15 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.15 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.13 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.11 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.11 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.09 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.0 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.89 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.85 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.83 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.82 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.8 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.71 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.67 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.63 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.62 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.58 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.51 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.5 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 89.41 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.37 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.37 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.32 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.24 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.18 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.11 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.08 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.85 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.85 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.67 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.63 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.63 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.62 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.48 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.47 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.43 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.27 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.26 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.25 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.99 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.89 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.88 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 87.86 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.69 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.36 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.27 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.26 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.25 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.15 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.12 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 86.74 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.71 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 86.68 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.67 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.65 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.6 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 86.54 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.39 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.15 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.83 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.82 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.71 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.65 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.52 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.12 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.09 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.99 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.29 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 83.9 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.81 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.58 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 83.36 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.27 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 83.26 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.98 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 82.55 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 82.52 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 82.52 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.37 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 82.26 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 82.03 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.63 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.19 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.87 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 80.78 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.39 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 80.31 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=335.19 Aligned_cols=206 Identities=24% Similarity=0.346 Sum_probs=139.6
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHH
Q ss_conf 46414146784892999985999977999999948989999811299996833798675-63189983788879999999
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTVr 244 (1445)
++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+..+ ++.++||+|++.+++.+||+
T Consensus 14 ~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~ 90 (232)
T d2awna2 14 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 90 (232)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-------
T ss_pred EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHH
T ss_conf 9981117788699899999899982999999996587888---8889999997788864443222343342026433378
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997677117874145659989999871999999978999998633344769999999990995435543346446667
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 Etl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~gl 324 (1445)
||+.|+.++++... ++...+++.+++.++|++..|..+. .|
T Consensus 91 eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~~-----~L 131 (232)
T d2awna2 91 ENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----AL 131 (232)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHCCHH-----HC
T ss_conf 89789998759988----------------------------------9999999999975788656648965-----69
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEE
Q ss_conf 74345689999997349852422269989998989999999999877039869999806910488305819995597399
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~iv 404 (1445)
||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++.+..+.|+++ ++|...++..++|+|++|.+|+++
T Consensus 132 SGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~iv 210 (232)
T d2awna2 132 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRVA 210 (232)
T ss_dssp --------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEE
T ss_conf 9999999999999703998899758887889889989999999998742987999-948999999969999999799999
Q ss_pred EECCHHHHHH
Q ss_conf 8439567999
Q 000523 405 YQGPRELVLE 414 (1445)
Q Consensus 405 y~G~~~~~~~ 414 (1445)
..|+.+++.+
T Consensus 211 ~~G~~~el~~ 220 (232)
T d2awna2 211 QVGKPLELYH 220 (232)
T ss_dssp EEECHHHHHH
T ss_pred EEECHHHHHH
T ss_conf 9808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=331.29 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=138.1
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHH
Q ss_conf 464141467848929999859999779999999489899998112999968337986756-3189983788879999999
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVr 244 (1445)
.+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. +.++||+|++.+++.+||+
T Consensus 20 ~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 96 (239)
T d1v43a3 20 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 96 (239)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred EEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHH
T ss_conf 9981306788799899999999982999999997589998---7879991641354770001589980033534222099
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997677117874145659989999871999999978999998633344769999999990995435543346446667
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1445)
Q Consensus 245 Etl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~gl 324 (1445)
||+.|.+++++... .+...+++++++.+||++.+|..+ ..|
T Consensus 97 enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 137 (239)
T d1v43a3 97 ENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQL 137 (239)
T ss_dssp HHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TTC
T ss_pred HHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHCCCH-----HHC
T ss_conf 99999998739999----------------------------------999999999998759855660995-----469
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEE
Q ss_conf 74345689999997349852422269989998989999999999877039869999806910488305819995597399
Q 000523 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1445)
Q Consensus 325 SGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~iv 404 (1445)
||||||||+||++|+.+|++++|||||+|||+.++.++++.++++....+.|+++ ++|...++..++|+|++|++|+++
T Consensus 138 SGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~iv 216 (239)
T d1v43a3 138 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLL 216 (239)
T ss_dssp CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEE
T ss_conf 9999889999766404998243068866689899989999999998731980799-948999999869999999899999
Q ss_pred EECCHHHHH
Q ss_conf 843956799
Q 000523 405 YQGPRELVL 413 (1445)
Q Consensus 405 y~G~~~~~~ 413 (1445)
..|+.+++.
T Consensus 217 ~~G~~~el~ 225 (239)
T d1v43a3 217 QIGSPTEVY 225 (239)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
T ss_conf 985999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=328.42 Aligned_cols=213 Identities=26% Similarity=0.340 Sum_probs=129.2
Q ss_pred EEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 48804112551530235515457854885421677618818999747999847899757089888737899999691178
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~ 926 (1445)
+..+|+++++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~ 68 (240)
T d1g2912 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (240)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEEC
T ss_conf 89986999989-------------9999856066886998999999999809999999964878--89898999999803
Q ss_pred CC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 00-------10214778615888899989989999988720899999889999999999992996322232369887767
Q 000523 927 QE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 999 (1445)
Q Consensus 927 ~~-------~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~gl 999 (1445)
.. ..+|.+|||+|++.+.|.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~L 140 (240)
T d1g2912 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (240)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred CCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHC
T ss_conf 566444245322551200221222310116676330687729---998999999999998759966762993-----349
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEE
Q ss_conf 988998999999985199788993999999999999999999998848-9989999468539999864618699249599
Q 000523 1000 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1078 (1445)
Q Consensus 1000 SgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~ 1078 (1445)
|||||||++||++|+.+|++|+|||||+|||+.+...+++.++++.++ |.|||+++|+.. ++....|++++|.+ |++
T Consensus 141 SGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~i 218 (240)
T d1g2912 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (240)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999999999999826998898258876569899989999999998636988999959999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 997699
Q 000523 1079 IYVGPL 1084 (1445)
Q Consensus 1079 vY~Gp~ 1084 (1445)
+..|++
T Consensus 219 v~~G~~ 224 (240)
T d1g2912 219 QQVGSP 224 (240)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998599
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=327.51 Aligned_cols=201 Identities=28% Similarity=0.402 Sum_probs=101.6
Q ss_pred EEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC------CCCCCEEEEECCCCCCCC
Q ss_conf 48854216776188189997479998478997570898887378999996911780------010214778615888899
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETFARISGYCEQNDIHSP 945 (1445)
Q Consensus 872 ~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 945 (1445)
..+|+|||+.+++||.++|+||||||||||+++|+|... +.+|+|.++|.+... ...+|.+|||+|+..++|
T Consensus 18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p 95 (242)
T d1oxxk2 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95 (242)
T ss_dssp EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCT
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCC
T ss_conf 899804078987998999998999809999999975868--887459999999513731115312045147730433466
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 98998999998872089999988999999999999299632223236988776798899899999998519978899399
Q 000523 946 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1025 (1445)
Q Consensus 946 ~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDEP 1025 (1445)
.+||+|++.|....+ ..+.++.++.++++++.++|++..+..+ ..||||||||++||++|+.+|++|++|||
T Consensus 96 ~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LSGGqkQRvaiARaL~~~P~llllDEP 167 (242)
T d1oxxk2 96 NLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEP 167 (242)
T ss_dssp TSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHCCHHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 665777766556761---3799999999999986659176664895-----45999998589987577604661454478
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 999999999999999999884-89989999468539999864618699249599997699
Q 000523 1026 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1026 TsGLD~~~a~~i~~~l~~~~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
|+|||+.++..+++.++++.+ .|.|||+++|++. ++.+..|++++|.+ |+++..|++
T Consensus 168 t~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv~~g~~ 225 (242)
T d1oxxk2 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKP 225 (242)
T ss_dssp TTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 66799899889989999998635987999979999-99996999999989-999998699
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=321.45 Aligned_cols=220 Identities=25% Similarity=0.322 Sum_probs=190.3
Q ss_pred EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 69992049999982587767872689899999997665415786544246414146784892999985999977999999
Q 000523 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1445)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~ 197 (1445)
.++.+||+..+. ...+|+|||+.+++||+++|+||||||||||+++
T Consensus 3 ~i~v~nl~k~yg----------------------------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~ 48 (240)
T d1g2912 3 GVRLVDVWKVFG----------------------------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRM 48 (240)
T ss_dssp EEEEEEEEEEET----------------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEEEEEEC----------------------------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHH
T ss_conf 189986999989----------------------------------9999856066886998999999999809999999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCC-------CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 948989999811299996833798675-------6318998378887999999999997677117874145659989999
Q 000523 198 LAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270 (1445)
Q Consensus 198 LaG~~~~~~~~~G~v~~nG~~~~~~~~-------~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~ 270 (1445)
|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.|+.+.++...
T Consensus 49 i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~------------ 113 (240)
T d1g2912 49 IAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR------------ 113 (240)
T ss_dssp HHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCH------------
T ss_pred HHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCH------------
T ss_conf 96487889---898999999803566444245322551200221222310116676330687729998------------
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 87199999997899999863334476999999999099543554334644666774345689999997349852422269
Q 000523 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 350 (1445)
Q Consensus 271 ~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEp 350 (1445)
.+...+++++++.+||++.+|..++ .||||||||++||++|+.+|+++++|||
T Consensus 114 ----------------------~e~~~~v~~~l~~~~l~~~~~~~p~-----~LSGGqkQRv~IAraL~~~P~iLllDEP 166 (240)
T d1g2912 114 ----------------------QEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEP 166 (240)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred ----------------------HHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf ----------------------9999999999987599667629933-----4999999999999998269988982588
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 9899989899999999998770398699998069104883058199955973998439567999
Q 000523 351 STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 351 tsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1445)
|+|||+.+..++++.++++.+..+.|+|+ ++|...++..++|+|++|.+|++++.|+.+++.+
T Consensus 167 t~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 167 LSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 76569899989999999998636988999-9599999999699999998999999859999982
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=325.20 Aligned_cols=214 Identities=22% Similarity=0.353 Sum_probs=191.0
Q ss_pred EEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 24880411255153023551545785488542167761881899974799984789975708988873789999969117
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~ 925 (1445)
.+..+|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 80-01021477861588889998998999998872089999988999999999999299632223236988776798899
Q 000523 926 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 926 ~~-~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqr 1004 (1445)
.. ...+|.+|||+|+..++|.+||+|++.|.+.++ ..++++.++.++++++.++|.+..+..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 8999999985199788993999999999999999999998848-998999946853999986461869924959999769
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1005 kRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp 1083 (1445)
||++||++|+.+|+||+|||||+|||+.++..+++.++++.++ |.|||+++|++. ++.+..|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000523 1084 L 1084 (1445)
Q Consensus 1084 ~ 1084 (1445)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=324.68 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=153.8
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHH
Q ss_conf 64141467848929999859999779999999489899998112999968337986756-31899837888799999999
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVrE 245 (1445)
+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..++ +.++||+|+..+++.+||+|
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHH
T ss_conf 884337898799899999899982999999996476888---78899956734652165740561512111174665778
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99976771178741456599899998719999999789999986333447699999999909954355433464466677
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 tl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glS 325 (1445)
|+.|+.+.++... ..+++.+++.++|.+..|..++ .||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS 129 (229)
T d3d31a2 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TLS 129 (229)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GSC
T ss_pred HHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HCC
T ss_conf 8888776405538-------------------------------------9999999998256555758955-----479
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEE
Q ss_conf 43456899999973498524222699899989899999999998770398699998069104883058199955973998
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1445)
Q Consensus 326 GGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy 405 (1445)
|||||||+||++|+.+|++++|||||+|||+.+..++.+.++++.+..+.|+++ ++|...++..++|+|++|.+|++++
T Consensus 130 GG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vtHd~~~~~~~~drv~vm~~G~iv~ 208 (229)
T d3d31a2 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH-ITHDQTEARIMADRIAVVMDGKLIQ 208 (229)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEE
T ss_conf 998401403043443677144347876799899999999999998647968999-7499999999699999997999999
Q ss_pred ECCHHHHH
Q ss_conf 43956799
Q 000523 406 QGPRELVL 413 (1445)
Q Consensus 406 ~G~~~~~~ 413 (1445)
.|+.+++.
T Consensus 209 ~g~~~el~ 216 (229)
T d3d31a2 209 VGKPEEIF 216 (229)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
T ss_conf 86999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=326.24 Aligned_cols=223 Identities=23% Similarity=0.360 Sum_probs=181.2
Q ss_pred EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 69992049999982587767872689899999997665415786544246414146784892999985999977999999
Q 000523 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1445)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~ 197 (1445)
||+|+||++.|+. ....+|+|||+.+++|+.++|+||||||||||+++
T Consensus 1 eI~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~l 48 (241)
T d2pmka1 1 DITFRNIRFRYKP--------------------------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48 (241)
T ss_dssp EEEEEEEEEESST--------------------------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEEEEEECC--------------------------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 9299999999089--------------------------------99603742489984999999999999989999999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 948989999811299996833798675---63189983788879999999999976771178741456599899998719
Q 000523 198 LAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274 (1445)
Q Consensus 198 LaG~~~~~~~~~G~v~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~ 274 (1445)
|+|.++|+ +|+|.+||.++.+... ++.++||+|+. +++..||+||+.|+..- ...+...+.++..
T Consensus 49 l~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~Ti~eNi~~~~~~----~~~~~~~~~~~~~---- 116 (241)
T d2pmka1 49 IQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDN-VLLNRSIIDNISLANPG----MSVEKVIYAAKLA---- 116 (241)
T ss_dssp HTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCTTSBHHHHHCTTSTT----CCHHHHHHHHHHH----
T ss_pred HHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCC-CCCCCCCCCCCCCCCCC----CCHHHHHHHHHHH----
T ss_conf 97357888---889999999944002465535288982446-55784000352235755----4388899999997----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 99999978999998633344769999999990995435543346446667743456899999973498524222699899
Q 000523 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354 (1445)
Q Consensus 275 ~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgL 354 (1445)
+. .-.+..++...+|.+|+.+. .||||||||++|||+++.+|++++|||||++|
T Consensus 117 -----------------~~--------~~~i~~~~~~~~t~i~~~g~-~LSGGq~QRvalARal~~~p~ililDEpts~L 170 (241)
T d2pmka1 117 -----------------GA--------HDFISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSAL 170 (241)
T ss_dssp -----------------TC--------HHHHTTSTTGGGSBCSTTTT-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred -----------------HH--------HHHHHHHHCCHHHHCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
T ss_conf -----------------55--------78887632013443278788-66988989875443444165135564776555
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 989899999999998770398699998069104883058199955973998439567999
Q 000523 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 355 Ds~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1445)
|+.++..|++.|+++. .+.|+|+.. |.. +....+|+|++|++|+++++|++++++.
T Consensus 171 D~~~~~~i~~~l~~l~--~~~Tvi~it-H~l-~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 171 DYESEHVIMRNMHKIC--KGRTVIIIA-HRL-STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CHHHHHHHHHHHHHHH--TTSEEEEEC-SSG-GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--CCCEEEEEE-CCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9899999999999985--899899997-889-9998499999998999999889999982
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=326.83 Aligned_cols=213 Identities=25% Similarity=0.371 Sum_probs=187.8
Q ss_pred EEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 48804112551530235515457854885421677618818999747999847899757089888737899999691178
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~ 926 (1445)
+.++|+++++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred CC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 00-10214778615888899989989999988720899999889999999999992996322232369887767988998
Q 000523 927 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 927 ~~-~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1445)
.. ..+|.+|||+|++.++|.+||+|++.|...++. .++++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 886444322234334202643337889789998759---988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999998519978899399999999999999999999884-89989999468539999864618699249599997699
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1006 Rlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+..|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=324.56 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=168.6
Q ss_pred EEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 48804112551530235515457854885421677618818999747999847899757089888737899999691178
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~ 926 (1445)
++++|++.++... .....+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------0102147786158888999899899999887208999998899999999999929963222323698877679
Q 000523 927 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 927 ~------~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glS 1000 (1445)
. ..+++.+|||+|+..+.+.+||+|++.|...++. .+.++.++.++++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 08755511554166430225222799649999999999849---998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 88998999999985199788993999999999999999999998848-99899994685399998646186992495999
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1079 (1445)
Q Consensus 1001 gGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~v 1079 (1445)
||||||++||++|+.+|++|++||||+|||+.++..+++.++++.++ |.|||+++|+.. ++....|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCCC
Q ss_conf 976998
Q 000523 1080 YVGPLG 1085 (1445)
Q Consensus 1080 Y~Gp~g 1085 (1445)
..|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
T ss_conf 987999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=316.96 Aligned_cols=219 Identities=23% Similarity=0.367 Sum_probs=172.8
Q ss_pred EEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 48804112551530235515457854885421677618818999747999847899757089888737899999691178
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~ 926 (1445)
++.+|+++++.... ....+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCCC---------EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 89990799948998---------20898713377884997999988999982165575068877--77662699999857
Q ss_pred CC------CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 00------10-2147786158888999899899999887208999998899999999999929963-2223236988776
Q 000523 927 QE------TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 998 (1445)
Q Consensus 927 ~~------~~-~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~g 998 (1445)
.. .+ ++.+|||+|+..+.|.+||+|++.+....+.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 7988998999999985199788993999999999999999999998848-998999946853999986461869924959
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 999 lSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~ 1077 (1445)
||||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|++. ....+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEEC-CE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9997699
Q 000523 1078 EIYVGPL 1084 (1445)
Q Consensus 1078 ~vY~Gp~ 1084 (1445)
++.-|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=324.39 Aligned_cols=229 Identities=22% Similarity=0.367 Sum_probs=183.3
Q ss_pred CCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 50699920499999825877678726898999999976654157865442464141467848929999859999779999
Q 000523 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (1445)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL 195 (1445)
+..|+|+||++.|+. +....+|+|+|+.+++|+.++|+||||||||||+
T Consensus 9 ~g~I~~~nvsf~Y~~-------------------------------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl 57 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPN-------------------------------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVA 57 (251)
T ss_dssp CCCEEEEEEEECCTT-------------------------------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEEEEEECCC-------------------------------CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHH
T ss_conf 336999998998899-------------------------------9999767443899849989999999998499999
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 999489899998112999968337986756---31899837888799999999999767711787414565998999987
Q 000523 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1445)
Q Consensus 196 ~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~ 272 (1445)
++|+|.++|+ +|+|.+||.++.+...+ +.++||+|++. ++..||+||+.|+..-+. ..+...+.....
T Consensus 58 ~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~tv~eni~~g~~~~~---~~~~~~~~~~~~-- 128 (251)
T d1jj7a_ 58 ALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQ-VFGRSLQENIAYGLTQKP---TMEEITAAAVKS-- 128 (251)
T ss_dssp HHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCC-CCSSBHHHHHHCSCSSCC---CHHHHHHHHHHH--
T ss_pred HHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHCCCC---HHHHHHHHHHHH--
T ss_conf 9986143787---6899889985311013788877654045650-027634655454210130---278899999999--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 19999999789999986333447699999999909954355433464466677434568999999734985242226998
Q 000523 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (1445)
Q Consensus 273 ~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEpts 352 (1445)
...-.+.+|++..+|.+++.+. .||||||||++|||+++.+|++++|||||+
T Consensus 129 ---------------------------~~~~~i~~l~~g~~~~i~~~~~-~LSGGqkQRvaiARal~~~p~ililDEpTs 180 (251)
T d1jj7a_ 129 ---------------------------GAHSFISGLPQGYDTEVDEAGS-QLSGGQRQAVALARALIRKPCVLILDDATS 180 (251)
T ss_dssp ---------------------------TCHHHHHTSTTGGGCBCCSSCS-SSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred ---------------------------HHHHHHHHCCCCCHHHHHCCCC-CCCHHHCEEEEEEECCCCCCCEEEECCCCC
T ss_conf ---------------------------8999998561211136751676-689547048998604456870787167576
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 99989899999999998770398699998069104883058199955973998439567999
Q 000523 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 353 gLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1445)
+||+.++..|.+.|+++.+..++|+++ ++|.. +....+|+|++|++|+++++|+++++++
T Consensus 181 ~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l-~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 181 ALDANSQLQVEQLLYESPERYSRSVLL-ITQHL-SLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp TCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCH-HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 568536899999999976506989999-95979-9998599999998999999889999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=321.37 Aligned_cols=233 Identities=20% Similarity=0.261 Sum_probs=194.7
Q ss_pred EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 69992049999982587767872689899999997665415786544246414146784892999985999977999999
Q 000523 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1445)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~ 197 (1445)
.++.+||+..+. +....+|+|||+.+++||+++|+||||||||||+++
T Consensus 3 ~i~v~nlsk~y~--------------------------------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~ 50 (242)
T d1oxxk2 3 RIIVKNVSKVFK--------------------------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRI 50 (242)
T ss_dssp CEEEEEEEEEEG--------------------------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHH
T ss_pred EEEEEEEEEEEC--------------------------------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 899975799988--------------------------------999899804078987998999998999809999999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 94898999981129999683379867------563189983788879999999999976771178741456599899998
Q 000523 198 LAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (1445)
Q Consensus 198 LaG~~~~~~~~~G~v~~nG~~~~~~~------~~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~ 271 (1445)
|+|..+|+ +|+|.++|.++.... .++.++||+|+..++|++||+||+.|+.+..+...
T Consensus 51 i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~------------- 114 (242)
T d1oxxk2 51 IAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK------------- 114 (242)
T ss_dssp HHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCH-------------
T ss_pred HHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCH-------------
T ss_conf 97586888---74599999995137311153120451477304334666657777665567613799-------------
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 71999999978999998633344769999999990995435543346446667743456899999973498524222699
Q 000523 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (1445)
Q Consensus 272 ~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEpt 351 (1445)
.+.+.+++++++.+||++.+|...+ .|||||||||+||++|+.+|+++++||||
T Consensus 115 ---------------------~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRvaiARaL~~~P~llllDEPt 168 (242)
T d1oxxk2 115 ---------------------EEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPF 168 (242)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred ---------------------HHHHHHHHHHHHHCCHHHHHHCCHH-----HCCHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf ---------------------9999999999866591766648954-----59999985899875776046614544786
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 89998989999999999877039869999806910488305819995597399843956799999836997899999567
Q 000523 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431 (1445)
Q Consensus 352 sgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~aD 431 (1445)
+|||+.++.++++.++++.+..+.|+++ ++|...++..++|+|++|++|+++..|+.+++.+ .|.+.-+++
T Consensus 169 ~~LD~~~~~~i~~~i~~l~~~~g~tvi~-vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~--------~P~~~~~~~ 239 (242)
T d1oxxk2 169 SNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD--------NPVSIQVAS 239 (242)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH--------SCSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH--------CCCCHHHHH
T ss_conf 6799899889989999998635987999-9799999999699999998999999869999986--------899979985
Q ss_pred HH
Q ss_conf 99
Q 000523 432 FL 433 (1445)
Q Consensus 432 fl 433 (1445)
|+
T Consensus 240 fl 241 (242)
T d1oxxk2 240 LI 241 (242)
T ss_dssp HH
T ss_pred CC
T ss_conf 16
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=318.68 Aligned_cols=222 Identities=23% Similarity=0.322 Sum_probs=191.3
Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99920499999825877678726898999999976654157865442464141467848929999859999779999999
Q 000523 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L 198 (1445)
++++||+..+.. ++....+|+|||+.+++||+++|+||||||||||+++|
T Consensus 2 i~v~nlsk~y~~------------------------------~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i 51 (240)
T d3dhwc1 2 IKLSNITKVFHQ------------------------------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV 51 (240)
T ss_dssp EEEEEEEEEEEC------------------------------SSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEEEEECC------------------------------CCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 799827999699------------------------------98148986150578869979999899989888999987
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 48989999811299996833798675------631899837888799999999999767711787414565998999987
Q 000523 199 AGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1445)
Q Consensus 199 aG~~~~~~~~~G~v~~nG~~~~~~~~------~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~ 272 (1445)
+|..+|+ +|+|.++|.++..... ++.++||+|+..+++.+||+||+.|+.+..+...
T Consensus 52 ~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~-------------- 114 (240)
T d3dhwc1 52 NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-------------- 114 (240)
T ss_dssp TTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCT--------------
T ss_pred CCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCH--------------
T ss_conf 5886366---77328867685208755511554166430225222799649999999999849998--------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 19999999789999986333447699999999909954355433464466677434568999999734985242226998
Q 000523 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (1445)
Q Consensus 273 ~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEpts 352 (1445)
++...+++.+++.+||++.+|...+ .|||||||||+||++|+.+|+++++||||+
T Consensus 115 --------------------~~~~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~lLllDEPt~ 169 (240)
T d3dhwc1 115 --------------------DEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATS 169 (240)
T ss_dssp --------------------THHHHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHHHHHHHHHHTCCSEEEEESGGG
T ss_pred --------------------HHHHHHHHHHHHHCCCCHHHHCCHH-----HCCHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf --------------------9999999999997699035548943-----499999989998640105898687446556
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHH
Q ss_conf 9998989999999999877039869999806910488305819995597399843956799
Q 000523 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 353 gLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~ 413 (1445)
|||+.++.+|++.|+++.+..+.|+++ ++|...++..++|+|++|++|++++.|+.+++.
T Consensus 170 ~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 170 ALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCCEEEE-EBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 589888567999999998646978999-838999999869999999799999987999997
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=328.71 Aligned_cols=231 Identities=24% Similarity=0.364 Sum_probs=185.6
Q ss_pred CCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCC
Q ss_conf 19999950699920499999825877678726898999999976654157865442464141467848929999859999
Q 000523 110 VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189 (1445)
Q Consensus 110 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~Gs 189 (1445)
.+++..+.+++|+||+|.|+. ....+|+|||+.+++|+.++|+||+||
T Consensus 8 ~pl~~~~g~I~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaivG~sGs 55 (255)
T d2hyda1 8 QPIEIKQGRIDIDHVSFQYND--------------------------------NEAPILKDINLSIEKGETVAFVGMSGG 55 (255)
T ss_dssp CCCCCCSCCEEEEEEEECSCS--------------------------------SSCCSEEEEEEEECTTCEEEEECSTTS
T ss_pred CCCCCCCCEEEEEEEEEEECC--------------------------------CCCCCEECEEEEECCCCEEEEECCCCC
T ss_conf 877777887999988999599--------------------------------997606443899839989999889998
Q ss_pred CHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 77999999948989999811299996833798675---631899837888799999999999767711787414565998
Q 000523 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266 (1445)
Q Consensus 190 GKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~ 266 (1445)
|||||+++|+|.++|+ +|+|.++|.++++... ++.++||+|++ +++..||+||+.|+... ...+.+.++
T Consensus 56 GKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~Ti~eNi~~g~~~----~~~~~~~~a 127 (255)
T d2hyda1 56 GKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDN-ILFSDTVKENILLGRPT----ATDEEVVEA 127 (255)
T ss_dssp SHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSC-CCCSSBHHHHHGGGCSS----CCHHHHHHH
T ss_pred CHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCC-CCCCCCHHHHHHCCCCC----CCHHHHHHH
T ss_conf 0999999997127863---000153998753078888634145651015-68998799998515867----999999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 99998719999999789999986333447699999999909954355433464466677434568999999734985242
Q 000523 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (1445)
Q Consensus 267 ~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~ 346 (1445)
++. .+. .-.+..|+++.||.+|+.+. .||||||||++|||+++.+|++++
T Consensus 128 l~~---~~l--------------------------~~~i~~lp~gl~t~i~~~g~-~LSgGq~QRi~iARal~~~p~ili 177 (255)
T d2hyda1 128 AKM---ANA--------------------------HDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 177 (255)
T ss_dssp HHH---TTC--------------------------HHHHHTSTTGGGCBCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHH---HCC--------------------------HHHHHHCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999---697--------------------------99997362420103338889-849999999999999855998999
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 22699899989899999999998770398699998069104883058199955973998439567999
Q 000523 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 347 lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1445)
|||||++||+.++..|.+.|+.+. .++|+|+..| +.+....+|+|++|++|+++..|+++++++
T Consensus 178 lDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~itH--~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 178 LDEATSALDLESESIIQEALDVLS--KDRTTLIVAH--RLSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECS--SGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEEC--CHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 837654479779999999999875--3888999968--999998599999998999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=314.45 Aligned_cols=213 Identities=23% Similarity=0.320 Sum_probs=163.8
Q ss_pred EEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 48804112551530235515457854885421677618818999747999847899757089888737899999691178
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~ 926 (1445)
+..+|++.++ +++.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 8999589999-------------99999806256884897999999999999999999966988--78887999867244
Q ss_pred C--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0--01021477861588889998998999998872089999988999999999999299632223236988776798899
Q 000523 927 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1004 (1445)
Q Consensus 927 ~--~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqr 1004 (1445)
. ...++.++||+|.+...+.+|+.|++.|.+.++. .+..+.++.++.+++.++|.+..+..+ +.||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHHH
T ss_conf 6839887218675001546878667788898998617---998999999999998679788885045-----33799898
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 89999999851997889939999999999999999999988489989999468539999864618699249599997699
Q 000523 1005 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1005 kRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
||++||++|+.+|++|+|||||+|||+.++..+++.++++++.|.|||+++|++. ++...+|++++|.+ |++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 9999999986599988733798897989999999999999965998999959899-99996999999989-999999289
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=311.05 Aligned_cols=220 Identities=22% Similarity=0.286 Sum_probs=181.5
Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99920499999825877678726898999999976654157865442464141467848929999859999779999999
Q 000523 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L 198 (1445)
++.+||+..+.. .+....+|+|||+.+++||+++|+|||||||||||++|
T Consensus 2 I~i~nlsk~y~~------------------------------~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i 51 (230)
T d1l2ta_ 2 IKLKNVTKTYKM------------------------------GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51 (230)
T ss_dssp EEEEEEEEEEEE------------------------------TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEEEEEECC------------------------------CCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHC
T ss_conf 899907999489------------------------------98208987133778849979999889999821655750
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCCC-------CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 489899998112999968337986756-------3189983788879999999999976771178741456599899998
Q 000523 199 AGKLDPTLKVSGTVTYNGHDMDEFVPQ-------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (1445)
Q Consensus 199 aG~~~~~~~~~G~v~~nG~~~~~~~~~-------~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~ 271 (1445)
+|..+|+ +|+|.++|.++....++ +.++||+|+..+++.+||+||+.|+...+..+...
T Consensus 52 ~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~----------- 117 (230)
T d1l2ta_ 52 GCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS----------- 117 (230)
T ss_dssp TTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCC-----------
T ss_pred CCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCC-----------
T ss_conf 6887777---66269999985768855512312555778804124176866888775788872247899-----------
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 719999999789999986333447699999999909954-3554334644666774345689999997349852422269
Q 000523 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 350 (1445)
Q Consensus 272 ~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~-~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEp 350 (1445)
..+....+..+++.++|++ .+|..+ ..|||||||||+||++|+.+|+++++|||
T Consensus 118 --------------------~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEP 172 (230)
T d1l2ta_ 118 --------------------GEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQP 172 (230)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred --------------------HHHHHHHHHHHHHHHCHHHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf --------------------99999999998876242345534880-----23899999999987565227888994687
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCH
Q ss_conf 98999898999999999987703986999980691048830581999559739984395
Q 000523 351 STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 409 (1445)
Q Consensus 351 tsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~ 409 (1445)
|+|||+.++.++++.|+++.+..+.|+|+.. |...+ ...+|+|++|.+|++++.|+.
T Consensus 173 Ts~LD~~~~~~i~~~l~~l~~~~g~tii~vT-Hd~~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVT-HDINV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTCCEEEEEC-SCHHH-HTTSSEEEEEETTEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC-CCHHH-HHHCCEEEEEECCEEEEECCC
T ss_conf 6546989999999999999984399999987-88899-986998999989999995257
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=316.02 Aligned_cols=230 Identities=25% Similarity=0.406 Sum_probs=182.5
Q ss_pred CCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCH
Q ss_conf 99995069992049999982587767872689899999997665415786544246414146784892999985999977
Q 000523 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (1445)
Q Consensus 112 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGK 191 (1445)
++.++.+++|+||++.|+. ....+|+|||+.+++|+.++|+|||||||
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~--------------------------------~~~~~L~~isl~i~~Ge~iaivG~sGsGK 54 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPG--------------------------------REVPALRNINLKIPAGKTVALVGRSGSGK 54 (253)
T ss_dssp CSCCCCCEEEEEEEECSSS--------------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSH
T ss_pred CCCCCEEEEEEEEEEEECC--------------------------------CCCCEEECEEEEECCCCEEEEECCCCCHH
T ss_conf 6778307999988999299--------------------------------99763533289985999999999999859
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999489899998112999968337986756---3189983788879999999999976771178741456599899
Q 000523 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 268 (1445)
Q Consensus 192 STLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~ 268 (1445)
|||+++|+|.++|+ +|+|.+||.++.+.... +.++||+|++ +++..|+++|+.++.... ...+.+.++++
T Consensus 55 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~~ti~~n~~~~~~~~---~~~~~i~~a~~ 127 (253)
T d3b60a1 55 STIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNV-HLFNDTVANNIAYARTEE---YSREQIEEAAR 127 (253)
T ss_dssp HHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSC-CCCSSBHHHHHHTTTTSC---CCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECC-CCCCCCHHHHHHHCCCCC---CCHHHHHHHHH
T ss_conf 99999986216888---468987880121110665420687995025-447862024332057220---89999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99871999999978999998633344769999999990995435543346446667743456899999973498524222
Q 000523 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMD 348 (1445)
Q Consensus 269 ~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lD 348 (1445)
. .+. .| . +-.|++..||.+|+.+. .|||||||||+|||+|+.+|++++||
T Consensus 128 ~---~~l-----------------------~~-~--i~~l~~gl~t~~~~~~~-~LSGGqkQRvaiARal~~~p~ililD 177 (253)
T d3b60a1 128 M---AYA-----------------------MD-F--INKMDNGLDTIIGENGV-LLSGGQRQRIAIARALLRDSPILILD 177 (253)
T ss_dssp T---TTC-----------------------HH-H--HHHSTTGGGSBCCTTSC-SSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred H---HHH-----------------------HH-H--HHHCCCCCHHHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9---817-----------------------99-9--97355441014348889-84999999999999995499889951
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 699899989899999999998770398699998069104883058199955973998439567999
Q 000523 349 EISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 349 EptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1445)
||||+||+.++..|++.|+++.+ ++|+|+. +|.. +....+|+|++|++|+++++|+++++++
T Consensus 178 Epts~LD~~~~~~i~~~l~~l~~--~~Tvi~i-tH~l-~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 178 EATSALDTESERAIQAALDELQK--NRTSLVI-AHRL-STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHT--TSEEEEE-CSCG-GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC--CCEEEEE-ECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 64445898899999999987522--7889999-8879-9998599999998999999889999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=314.78 Aligned_cols=209 Identities=21% Similarity=0.282 Sum_probs=183.3
Q ss_pred EEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 48804112551530235515457854885421677618818999747999847899757089888737899999691178
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~ 926 (1445)
+..+|+++++. . .+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0-010214778615888899989989999988720899999889999999999992996322232369887767988998
Q 000523 927 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 927 ~-~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1445)
. ...+|.+|||+|+..++|.+||+|++.|...++... . ++.++++++.+++.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999998519978899399999999999999999999884-89989999468539999864618699249599997699
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1006 Rlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
|++||++|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|++. ++.+..|++++|.+ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.4e-45 Score=305.65 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=110.9
Q ss_pred EEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC----------------CCCCEEE
Q ss_conf 488542167761881899974799984789975708988873789999969117800----------------1021477
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----------------TFARISG 935 (1445)
Q Consensus 872 ~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~----------------~~~~~~g 935 (1445)
..+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.+|
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig 92 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 92 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEE
T ss_conf 998815066886997999998999829999999974766--789977999999336775200002351767999745448
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 861588889998998999998872089999988999999999999299632-2232369887767988998999999985
Q 000523 936 YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV 1014 (1445)
Q Consensus 936 yv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~glSgGqrkRlsia~~L~ 1014 (1445)
||+|+..+.|.+||.|++.+...... ..+..+.++.+.++++.++|.+. .+..+ ..|||||+||++||++|+
T Consensus 93 ~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----~~LSGG~~QRv~iAraL~ 165 (258)
T d1b0ua_ 93 MVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALA 165 (258)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHHHH
T ss_pred EEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----CCCCHHHHHHHHHHHHHH
T ss_conf 99833231411010213656578762--99989999999999998299524430682-----205677888989999984
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 1997889939999999999999999999988489989999468539999864618699249599997699
Q 000523 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1015 ~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
.+|++|++||||+|||+.+...|++.++++.++|.|||+++|++. ++....|++++|.+ |+++..|++
T Consensus 166 ~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 399878852455568878888998765541036883389948999-99986999999979-999998499
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=320.54 Aligned_cols=222 Identities=24% Similarity=0.340 Sum_probs=177.0
Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99920499999825877678726898999999976654157865442464141467848929999859999779999999
Q 000523 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L 198 (1445)
++++||+|.|+. . ..+|+|||+.++||+.++|+||||||||||+++|
T Consensus 2 le~knvsf~Y~~------------------------------~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll 48 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------------------------S---EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48 (242)
T ss_dssp EEEEEEEECSSS------------------------------S---SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEEEECCC------------------------------C---CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 799988998799------------------------------9---8414225899859999999999999799999999
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 48989999811299996833798675---631899837888799999999999767711787414565998999987199
Q 000523 199 AGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1445)
Q Consensus 199 aG~~~~~~~~~G~v~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~ 275 (1445)
+|.++|+ +|+|.+||.++++... ++.++||+|++. ++..||+||+.++..-.. ..+...+..+.....
T Consensus 49 ~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~ti~eNi~~~~~~~~---~~~~~~~~~~~~~~~-- 119 (242)
T d1mv5a_ 49 ERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA-IMAGTIRENLTYGLEGDY---TDEDLWQVLDLAFAR-- 119 (242)
T ss_dssp TTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSC-CCCEEHHHHTTSCTTSCS---CHHHHHHHHHHHTCT--
T ss_pred HHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCC-CCCCCHHHHEECCCCCCC---CHHHHHHHHHHHHHH--
T ss_conf 9960989---8779889988442467888743679756654-578534543012445554---235677899999755--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 99999789999986333447699999999909954355433464466677434568999999734985242226998999
Q 000523 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1445)
Q Consensus 276 ~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLD 355 (1445)
-.+..+++..+|.+|+.+. .||||||||++|||+++.+|++++|||||++||
T Consensus 120 ---------------------------~~~~~~~~~~~~~i~~~g~-~LSGGqkQRv~iARal~~~p~ililDEpts~LD 171 (242)
T d1mv5a_ 120 ---------------------------SFVENMPDQLNTEVGERGV-KISGGQRQRLAIARAFLRNPKILMLDEATASLD 171 (242)
T ss_dssp ---------------------------TTTTSSTTGGGCEESTTSB-CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSC
T ss_pred ---------------------------HHHCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf ---------------------------5420374210152368789-879999999999999852998999658865569
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 89899999999998770398699998069104883058199955973998439567999
Q 000523 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 356 s~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1445)
+.++..+++.|+++. .+.|+++.. |. .+....+|+|++|++|++++.|+++++++
T Consensus 172 ~~~~~~i~~~l~~l~--~~~Tvi~it-H~-l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 172 SESESMVQKALDSLM--KGRTTLVIA-HR-LSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp SSSCCHHHHHHHHHH--TTSEEEEEC-CS-HHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCEEEEEE-CC-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 889999988788871--799899997-87-99998499999998999999999999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.8e-45 Score=309.37 Aligned_cols=213 Identities=22% Similarity=0.336 Sum_probs=121.0
Q ss_pred EEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 24880411255153023551545785488542167761881899974799984789975708988873789999969117
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~ 925 (1445)
-++.+|++.++ +...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 79996189998-------------99888830257888997999999999859999999967888--8803898424434
Q ss_pred CCC---CCCC-EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 800---1021-4778615888899989989999988720899999889999999999992-9963222323698877679
Q 000523 926 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 1000 (1445)
Q Consensus 926 ~~~---~~~~-~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~glS 1000 (1445)
... ..++ -++|++|+..+++.+||+|++.+.+..+.+ .+..++.++++++.+ +|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCH-----HHCC
T ss_conf 46608888874235567655457763699999988873278----88999999999987417688875854-----3389
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEE
Q ss_conf 88998999999985199788993999999999999999999998848998999946853999986461869924959999
Q 000523 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1080 (1445)
Q Consensus 1001 gGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY 1080 (1445)
||||||++||++|+.+|++|+|||||+|||+.+...+++.++++++.|.||++++|+.. ++.+..|++++|.+ |++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEE
T ss_conf 99999999999998299874003988679999999999999999968998999958899-99996999999989-99999
Q ss_pred ECCC
Q ss_conf 7699
Q 000523 1081 VGPL 1084 (1445)
Q Consensus 1081 ~Gp~ 1084 (1445)
.|++
T Consensus 220 ~g~~ 223 (240)
T d1ji0a_ 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred ECCH
T ss_conf 8489
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-44 Score=303.54 Aligned_cols=207 Identities=25% Similarity=0.299 Sum_probs=180.1
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC--CCEEEEECCCCCCCCCCC
Q ss_conf 246414146784892999985999977999999948989999811299996833798675--631899837888799999
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMT 242 (1445)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1445)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++..++++|
T Consensus 15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~lt 91 (238)
T d1vpla_ 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 91 (238)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCC
T ss_conf 99980625688489799999999999999999996698878---887999867244683988721867500154687866
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999976771178741456599899998719999999789999986333447699999999909954355433464466
Q 000523 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1445)
Q Consensus 243 VrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~ 322 (1445)
|+|++.|.+.+.+... .+....++.+++.++|.+-.+..++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (238)
T d1vpla_ 92 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 132 (238)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH-----
T ss_conf 7788898998617998----------------------------------9999999999986797888850453-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCE
Q ss_conf 67743456899999973498524222699899989899999999998770398699998069104883058199955973
Q 000523 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1445)
Q Consensus 323 glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ 402 (1445)
.+|||||||+.||++++.+|++++|||||+|||+.+..++.+.++++.. .+.|+++ .+|...++..++|+|++|++|+
T Consensus 133 ~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~-~tH~l~~~~~~~drv~vl~~G~ 210 (238)
T d1vpla_ 133 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILV-SSHNMLEVEFLCDRIALIHNGT 210 (238)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-EECCHHHHTTTCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEECCE
T ss_conf 3799898999999998659998873379889798999999999999996-5998999-9598999999699999998999
Q ss_pred EEEECCHHHHHHH
Q ss_conf 9984395679999
Q 000523 403 IVYQGPRELVLEF 415 (1445)
Q Consensus 403 ivy~G~~~~~~~~ 415 (1445)
+++.|+.+++.+.
T Consensus 211 iv~~g~~~el~~~ 223 (238)
T d1vpla_ 211 IVETGTVEELKER 223 (238)
T ss_dssp EEEEEEHHHHHHH
T ss_pred EEEECCHHHHHHC
T ss_conf 9999289999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7e-45 Score=305.90 Aligned_cols=219 Identities=22% Similarity=0.326 Sum_probs=181.6
Q ss_pred CEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 06999204999998258776787268989999999766541578654424641414678489299998599997799999
Q 000523 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (1445)
Q Consensus 117 ~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~ 196 (1445)
+-++.+||+..+. .+++|+|||+.+++||+++|+||||||||||++
T Consensus 5 ~~Lev~~l~k~yg----------------------------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~ 50 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG----------------------------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp EEEEEEEEEEEET----------------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHH
T ss_pred EEEEEEEEEEEEC----------------------------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf 0799961899989----------------------------------988883025788899799999999985999999
Q ss_pred HHHCCCCCCCCCEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99489899998112999968337986756----31899837888799999999999767711787414565998999987
Q 000523 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1445)
Q Consensus 197 ~LaG~~~~~~~~~G~v~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~ 272 (1445)
+|+|.++|+ +|+|.++|.++....++ ..++|++|+..+++.+||+||+.+.+........
T Consensus 51 ~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~------------- 114 (240)
T d1ji0a_ 51 AIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG------------- 114 (240)
T ss_dssp HHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSH-------------
T ss_pred HHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH-------------
T ss_conf 996788888---0389842443446608888874235567655457763699999988873278889-------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 1999999978999998633344769999999990-995435543346446667743456899999973498524222699
Q 000523 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (1445)
Q Consensus 273 ~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~l-gL~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEpt 351 (1445)
.....+.++..+ +|++..|..++ .|||||||||+||++|+.+|++++|||||
T Consensus 115 ----------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~iAraL~~~P~lLllDEPt 167 (240)
T d1ji0a_ 115 ----------------------IKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp ----------------------HHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred ----------------------HHHHHHHHHHHHHCHHHHHHCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf ----------------------999999999874176888758543-----38999999999999998299874003988
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 899989899999999998770398699998069104883058199955973998439567999
Q 000523 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 352 sgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1445)
+|||+.+..++++.++++.. .+.|+++ ++|...++..++|+|++|++|++++.|+.+++.+
T Consensus 168 ~gLD~~~~~~i~~~i~~l~~-~g~til~-~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 168 LGLAPILVSEVFEVIQKINQ-EGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-TTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 67999999999999999996-8998999-9588999999699999998999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-45 Score=308.12 Aligned_cols=218 Identities=26% Similarity=0.353 Sum_probs=152.3
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCC
Q ss_conf 464141467848929999859999779999999489899998112999968337986756----3189983788879999
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGEM 241 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~l 241 (1445)
++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++|+...++.+
T Consensus 18 ~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~l 94 (254)
T d1g6ha_ 18 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 94 (254)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 8871217998899799999999984999999997797688---7379999996640569999983387257764247887
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999997677117874145659989999871999999978999998633344769999999990995435543346446
Q 000523 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1445)
Q Consensus 242 TVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~ 321 (1445)
||+||+.+++..++.... ... ... ...++ .++....++.+++.+++++..|+.+++
T Consensus 95 tv~enl~~~~~~~~~~~~----~~~---~~~-~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 150 (254)
T d1g6ha_ 95 TVLENLLIGEICPGESPL----NSL---FYK-KWIPK-------------EEEMVEKAFKILEFLKLSHLYDRKAGE--- 150 (254)
T ss_dssp BHHHHHHGGGTSTTSCHH----HHH---HHC-SSCCC-------------CHHHHHHHHHHHHHTTCGGGTTSBGGG---
T ss_pred EEEEEEEEHHHHCCCCCH----HHH---HHH-CCCCC-------------HHHHHHHHHHHHHHCCCCHHCCCCHHH---
T ss_conf 423214301333034504----566---542-13532-------------899999999998761963020595356---
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCC
Q ss_conf 66774345689999997349852422269989998989999999999877039869999806910488305819995597
Q 000523 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1445)
Q Consensus 322 ~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G 401 (1445)
|||||||||.||++|+.+|++++|||||+|||+.+..++++.++++.. . +++|+.++|...++..++|+|++|++|
T Consensus 151 --LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~vsHdl~~~~~~~Drv~vm~~G 226 (254)
T d1g6ha_ 151 --LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFNG 226 (254)
T ss_dssp --SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred --CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf --991888899999999759272324397656999999999999999997-8-998999947699999869999999699
Q ss_pred EEEEECCHHHHHH
Q ss_conf 3998439567999
Q 000523 402 QIVYQGPRELVLE 414 (1445)
Q Consensus 402 ~ivy~G~~~~~~~ 414 (1445)
+++..|+.+|+.+
T Consensus 227 ~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 227 QIIAEGRGEEEIK 239 (254)
T ss_dssp EEEEEEESHHHHH
T ss_pred EEEEEECHHHHHH
T ss_conf 8999966899865
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-45 Score=308.30 Aligned_cols=218 Identities=24% Similarity=0.261 Sum_probs=186.0
Q ss_pred EEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 24880411255153023551545785488542167761881899974799984789975708988873789999969117
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~ 925 (1445)
-+..+|++.++ +..++|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69997789997-------------99688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8001----021477861588889998998999998872089----------99998899999999999929963222323
Q 000523 926 KQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------PEVDSETRKMFIDEVMELVELNPLRQSLV 991 (1445)
Q Consensus 926 ~~~~----~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~----------~~~~~~~~~~~v~~vl~~l~L~~~~~~~v 991 (1445)
.... .++-++|++|+....+.+||.|++.+++..+.. .....++..+.++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 69887767988998999999985199788993999999999999999999998848998999946853999986461869
Q 000523 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1071 (1445)
Q Consensus 992 g~~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~ill 1071 (1445)
..||||||||+.||++|+.+|++|+|||||+|||+.++..+++.++++.+.|.||++++|+.. ++.+..|++++
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----HHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf -----569918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCC
Q ss_conf 92495999976998
Q 000523 1072 MKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1072 L~~gG~~vY~Gp~g 1085 (1445)
|.+ |+++..|++.
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEECHH
T ss_conf 969-9899996689
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.9e-44 Score=301.19 Aligned_cols=205 Identities=23% Similarity=0.333 Sum_probs=172.9
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC----------------CCEEE
Q ss_conf 46414146784892999985999977999999948989999811299996833798675----------------63189
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----------------QRTAA 229 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~----------------~~~~~ 229 (1445)
.+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++
T Consensus 16 ~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig 92 (258)
T d1b0ua_ 16 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 92 (258)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEE
T ss_conf 9881506688699799999899982999999997476678---9977999999336775200002351767999745448
Q ss_pred EECCCCCCCCCCCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98378887999999999997677-11787414565998999987199999997899999863334476999999999099
Q 000523 230 YISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1445)
Q Consensus 230 yv~Q~d~~~~~lTVrEtl~f~~~-~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL 308 (1445)
||+|+...++.+||.||+.|+.. ..+.. + .+....+..+++.+||
T Consensus 93 ~vfQ~~~l~~~~tv~env~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l 138 (258)
T d1b0ua_ 93 MVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------------------------------HDARERALKYLAKVGI 138 (258)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCC-H---------------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEECHHHCCCHHCCHHHHHHHHHHCCCC-H---------------------------------HHHHHHHHHHHHHCCC
T ss_conf 99833231411010213656578762999-8---------------------------------9999999999998299
Q ss_pred CCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHH
Q ss_conf 543-5543346446667743456899999973498524222699899989899999999998770398699998069104
Q 000523 309 DVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1445)
Q Consensus 309 ~~~-~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~ 387 (1445)
.+- .|.. ...|||||||||+||++|+.+|+++++||||+|||+.+..+|.+.|+++.. .+.| ++.++|...+
T Consensus 139 ~~~~~~~~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~t-il~vtHdl~~ 211 (258)
T d1b0ua_ 139 DERAQGKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKT-MVVVTHEMGF 211 (258)
T ss_dssp CHHHHTSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCC-EEEECSCHHH
T ss_pred CHHHHCCC-----CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCC-EEEEECCHHH
T ss_conf 52443068-----220567788898999998439987885245556887888899876554103-6883-3899489999
Q ss_pred HHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 883058199955973998439567999
Q 000523 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414 (1445)
Q Consensus 388 ~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1445)
+..++|+|++|.+|++++.|+.+++..
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 998699999997999999849999983
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.1e-44 Score=304.79 Aligned_cols=199 Identities=24% Similarity=0.337 Sum_probs=144.4
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 41467848929999859999779999999489899998112999968337986756-31899837888799999999999
Q 000523 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLA 248 (1445)
Q Consensus 170 ~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVrEtl~ 248 (1445)
|||+.+. ++.++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. +.++||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 76771178741456599899998719999999789999986333447699999999909954355433464466677434
Q 000523 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1445)
Q Consensus 249 f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGq 328 (1445)
|+.+-. . + .+.+.+++++++.+||++..|.... .|||||
T Consensus 93 ~~l~~~--~----------~------------------------~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------R------------------------VERDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTS--C----------H------------------------HHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHCCC--C----------H------------------------HHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHH
T ss_conf 532336--7----------7------------------------8899999999986383756657944-----489999
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 56899999973498524222699899989899999999998770398699998069104883058199955973998439
Q 000523 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1445)
Q Consensus 329 rkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~ 408 (1445)
||||+||++++.+|++++|||||+|||+.++..+++.++++.+..+.|+++ ++|...++..++|+|++|++|+++..|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~-vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743976999-8189999999699999998999999906
Q ss_pred HHHHHH
Q ss_conf 567999
Q 000523 409 RELVLE 414 (1445)
Q Consensus 409 ~~~~~~ 414 (1445)
.+++.+
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999832
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.9e-44 Score=301.17 Aligned_cols=193 Identities=23% Similarity=0.370 Sum_probs=172.7
Q ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 216776188189997479998478997570898887378999996911780-0102147786158888999899899999
Q 000523 877 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLF 955 (1445)
Q Consensus 877 ~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTV~E~l~f 955 (1445)
|||+.+. +|.++|+||||||||||+++|+|... +.+|+|.++|.+... ...+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 88720899999889999999999992996322232369887767988998999999985199788993999999999999
Q 000523 956 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035 (1445)
Q Consensus 956 sa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~ 1035 (1445)
.. + ..++.+++++++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 999999998848-9989999468539999864618699249599997699
Q 000523 1036 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1036 ~i~~~l~~~~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
.+++.++++.+. |.|||+++|++. ++....|++++|.+ |+++..|.+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-44 Score=303.22 Aligned_cols=211 Identities=27% Similarity=0.437 Sum_probs=172.7
Q ss_pred EEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 24880411255153023551545785488542167761881899974799984789975708988873789999969117
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~ 925 (1445)
.++|+||+|+++. +.+.+|+|||+.+++||.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCC
Q ss_conf 80---010214778615888899989989999988720899999889999999999992996-------32223236988
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPG 995 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~~ 995 (1445)
.. ..+++.++||+|+..++ ..||+|++.|.. +..+.++ ++++++..++. .-.++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 4002465535288982446557-840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 77679889989999999851997889939999999999999999999988489989999468539999864618699249
Q 000523 996 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075 (1445)
Q Consensus 996 ~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~g 1075 (1445)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|.+
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf -8669889898754434441651355647765559899999999999985-8998999978899--9984999999989-
Q ss_pred CEEEEECCC
Q ss_conf 599997699
Q 000523 1076 GQEIYVGPL 1084 (1445)
Q Consensus 1076 G~~vY~Gp~ 1084 (1445)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-43 Score=295.38 Aligned_cols=216 Identities=22% Similarity=0.313 Sum_probs=173.0
Q ss_pred EEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 24880411255153023551545785488542167761881899974799984789975708988873789999969117
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~ 925 (1445)
.+.++||+|+++.. .+..+|+|||+.+++||.+||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69999989988999----------99976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 80---0102147786158888999899899999887208999998899999-----999999929963222323698877
Q 000523 926 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----IDEVMELVELNPLRQSLVGLPGVS 997 (1445)
Q Consensus 926 ~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~-----v~~vl~~l~L~~~~~~~vg~~~~~ 997 (1445)
.. ..+++.++||+|+..+++ .||+|++.|... ........... ..+.++ .|..-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 11013788877654045650027-634655454210----1302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 6798899899999998519978899399999999999999999999884-899899994685399998646186992495
Q 000523 998 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 998 glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG 1076 (1445)
.||||||||++|||+|+.+|+||+||||||+||+.+...+++.++++.+ .|+|+|+++|+++ ..+.+|++++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--9985999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99997699
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~vY~Gp~ 1084 (1445)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.7e-43 Score=297.08 Aligned_cols=213 Identities=24% Similarity=0.384 Sum_probs=175.9
Q ss_pred CCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 72248804112551530235515457854885421677618818999747999847899757089888737899999691
Q 000523 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 923 (1445)
Q Consensus 844 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~ 923 (1445)
...+.++||+|+++. ....+|+|||+.+++||.+||+|+||||||||+++|+|... +.+|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCE
T ss_conf 887999988999599-----------99760644389983998999988999809999999971278--63000153998
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCC
Q ss_conf 1780---01021477861588889998998999998872089999988999999999999299632-------2232369
Q 000523 924 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 993 (1445)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~ 993 (1445)
+... ..+++.++||+|++.++ ..||+|++.|.. ++.+.+ .++++++..++.+. .++.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~-----~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCC-----CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 753078888634145651015689-987999985158-----679999----9999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 88776798899899999998519978899399999999999999999999884899899994685399998646186992
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~ 1073 (1445)
. ...||||||||++|||+|+.+|+|++||||||+||+.++..+++.++++. .++|+|+++|+++ ....+|++++|+
T Consensus 151 ~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE
T ss_conf 8-89849999999999999855998999837654479779999999999875-3888999968999--998599999998
Q ss_pred CCCEEEEECCC
Q ss_conf 49599997699
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~vY~Gp~ 1084 (1445)
+ |+++..|+.
T Consensus 227 ~-G~iv~~G~~ 236 (255)
T d2hyda1 227 N-GHIVETGTH 236 (255)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
T ss_conf 9-999998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.1e-44 Score=304.56 Aligned_cols=210 Identities=28% Similarity=0.419 Sum_probs=171.1
Q ss_pred EEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 48804112551530235515457854885421677618818999747999847899757089888737899999691178
Q 000523 847 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 926 (1445)
Q Consensus 847 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~ 926 (1445)
++++||+|+++. .+.+|+|||+.++|||++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 799988998799------------9841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCC
Q ss_conf 0---0102147786158888999899899999887208999998899999999999929963-------22232369887
Q 000523 927 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLPGV 996 (1445)
Q Consensus 927 ~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~ 996 (1445)
. ..+++.++||+|++.+++. ||+|++.+.. ....+.+. ++++++..++.. ..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-3454301244----55542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 76798899899999998519978899399999999999999999999884899899994685399998646186992495
Q 000523 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1076 (1445)
Q Consensus 997 ~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG 1076 (1445)
..||||||||++|||+|+.+|+||+||||||+||+.++..+++.++++. .|+|||+++|+++ ....+|++++|.+ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--9984999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99997699
Q 000523 1077 QEIYVGPL 1084 (1445)
Q Consensus 1077 ~~vY~Gp~ 1084 (1445)
+++..|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
T ss_conf 99999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.2e-43 Score=293.32 Aligned_cols=213 Identities=23% Similarity=0.313 Sum_probs=174.0
Q ss_pred CEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 22488041125515302355154578548854216776188189997479998478997570898887378999996911
Q 000523 845 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 924 (1445)
Q Consensus 845 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~ 924 (1445)
..+.++||+|+++. .+..+|+|||+.+++||.+||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 07999988999299-----------99763533289985999999999999859999999862168--884689878801
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCC
Q ss_conf 780---01021477861588889998998999998872089999988999999999999299632-------22323698
Q 000523 925 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 994 (1445)
Q Consensus 925 ~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 994 (1445)
... ..+++.++||+|+..++ ..|+++++.+.. +...+.+ .++++++..++.+. .++.+|..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 21110665420687995025447-862024332057----2208999----99999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEEC
Q ss_conf 87767988998999999985199788993999999999999999999998848998999946853999986461869924
Q 000523 995 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 995 ~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~ 1074 (1445)
...||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .++|+|+++|+++ ..+.+|++++|.+
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC
T ss_conf -89849999999999999954998899516444589889999999998752-2788999988799--9985999999989
Q ss_pred CCEEEEECCC
Q ss_conf 9599997699
Q 000523 1075 GGQEIYVGPL 1084 (1445)
Q Consensus 1075 gG~~vY~Gp~ 1084 (1445)
|+++..|+.
T Consensus 226 -G~Iv~~G~~ 234 (253)
T d3b60a1 226 -GIIVERGTH 234 (253)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
T ss_conf -999998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-44 Score=303.76 Aligned_cols=197 Identities=21% Similarity=0.328 Sum_probs=156.5
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 46414146784892999985999977999999948989999811299996833798675631899837888799999999
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE 245 (1445)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|+... +..||+|
T Consensus 50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l-~~~tv~e 115 (281)
T d1r0wa_ 50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWI-MPGTIKE 115 (281)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCC-CSEEHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCC-CCCEEEC
T ss_conf 6773759998599999999899982999999995797478---82899999----------99998164302-6760321
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99976771178741456599899998719999999789999986333447699999999909954355433464466677
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 tl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glS 325 (1445)
|+.|+.... ..+ ..+..+ .. +....+..++...++.+|+.+. .||
T Consensus 116 ni~~~~~~~--~~~---~~~~~~---~~--------------------------~~~~~i~~l~~~~~~~~~~~~~-~LS 160 (281)
T d1r0wa_ 116 NIIFGVSYD--EYR---YKSVVK---AC--------------------------QLQQDITKFAEQDNTVLGEGGV-TLS 160 (281)
T ss_dssp HHTTTSCCC--HHH---HHHHHH---HT--------------------------TCHHHHTTSTTGGGCEECTTCT-TSC
T ss_pred CCCCCCCCC--CHH---HHHHHH---HH--------------------------HHHHHHHHCHHHHHHHHHHHCC-CCC
T ss_conf 420333456--057---999999---97--------------------------7699998461233235555423-779
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEE
Q ss_conf 43456899999973498524222699899989899999999998770398699998069104883058199955973998
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1445)
Q Consensus 326 GGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy 405 (1445)
|||||||+|||+|+.+|++++|||||++||+.+..++++.+..... .++|+|+. +|.. +....+|+|++|++|++++
T Consensus 161 gGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~i-tH~~-~~l~~aDrI~vl~~G~i~~ 237 (281)
T d1r0wa_ 161 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILV-TSKM-EHLRKADKILILHQGSSYF 237 (281)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEE-CSCH-HHHHTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ECHH-HHHHHCCEEEEEECCEEEE
T ss_conf 9999999999999869635133385544898999999999998862-89999999-2528-9998599999998999999
Q ss_pred ECCHHHHHH
Q ss_conf 439567999
Q 000523 406 QGPRELVLE 414 (1445)
Q Consensus 406 ~G~~~~~~~ 414 (1445)
+|++++++.
T Consensus 238 ~Gt~~eL~~ 246 (281)
T d1r0wa_ 238 YGTFSELQS 246 (281)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHC
T ss_conf 878999960
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.5e-40 Score=274.12 Aligned_cols=187 Identities=21% Similarity=0.353 Sum_probs=150.8
Q ss_pred EEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 48854216776188189997479998478997570898887378999996911780010214778615888899989989
Q 000523 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 951 (1445)
Q Consensus 872 ~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTV~E 951 (1445)
+++|+|||+.+++||++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999988720899999889999999999992-------9963222323698877679889989999999851997889939
Q 000523 952 SLLFSAWLRLSPEVDSETRKMFIDEVMELV-------ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1024 (1445)
Q Consensus 952 ~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l-------~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDE 1024 (1445)
++.|.. ...... .+++++.. .+.+..++.++.. ...||||||||++||++|+.+|+||+|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 420333------456057----9999999776999984612332355554-23779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCC
Q ss_conf 9999999999999999999884899899994685399998646186992495999976998
Q 000523 1025 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1085 (1445)
Q Consensus 1025 PTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~g 1085 (1445)
||++||+.+...+++.+......++|+|+++|++ +....+|++++|.+ |++++.|+..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 5544898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.4e-40 Score=273.68 Aligned_cols=193 Identities=22% Similarity=0.367 Sum_probs=154.2
Q ss_pred EEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 854216776188189997479998478997570898887378999996911780---01021477861588889998998
Q 000523 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 950 (1445)
Q Consensus 874 iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~ 950 (1445)
.|++||+.+++||++||+||||||||||+++|+|... .+|+|.++|.+... ...+...+|+.|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999887208999998899999999999929963222323698877679889989999999851-------99788993
Q 000523 951 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1023 (1445)
Q Consensus 951 E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~-------~p~il~lD 1023 (1445)
+.+.+... . ..+.+.++++++.+++.+..+..+ +.||||||||++||++|+. +|+||+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001----4----668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 9999999999999999999988489989999468539999864618699249599997699
Q 000523 1024 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1024 EPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
|||+|||..+...+++.++++.+.|.|||+++|+++ ++.+..|++++|++ |++++.|++
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 877778989999999999999867999999967799-99997999999979-989998899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-38 Score=264.01 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=165.7
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCH
Q ss_conf 64141467848929999859999779999999489899998112999968337986756---318998378887999999
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTV 243 (1445)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTV 243 (1445)
.|++||+.+++||+++|+||||||||||+++|+|.. ++ +|+|.++|.++....++ ...+|++|+.......++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 555888899489899999899980999999994887-99---55999999999869989998640245121357744209
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999767711787414565998999987199999997899999863334476999999999099543554334644666
Q 000523 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1445)
Q Consensus 244 rEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~g 323 (1445)
.+++.+...-+ .....++.+++.++|++..+..+. .
T Consensus 90 ~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~ 125 (231)
T d1l7vc_ 90 WHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTN-----Q 125 (231)
T ss_dssp HHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----G
T ss_pred HHHHHHCCCHH---------------------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 88764100146---------------------------------------689999999986598767676844-----5
Q ss_pred CCHHHHHHHHHHHHHHC-------CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 77434568999999734-------98524222699899989899999999998770398699998069104883058199
Q 000523 324 ISGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 324 lSGGqrkRvsia~~l~~-------~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~ 396 (1445)
||||||||+++|++++. +|++++|||||+|||..+...+.+.++++.. .+.|+++ ++|...++.+.+|+++
T Consensus 126 LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~-vtHdl~~~~~~~dri~ 203 (231)
T d1l7vc_ 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVM-SSHDLNHTLRHAHRAW 203 (231)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEE-CCCCHHHHHHHCSBCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEE
T ss_conf 6998899999999998517133899889997187777898999999999999986-7999999-9677999999799999
Q ss_pred EECCCEEEEECCHHHHH
Q ss_conf 95597399843956799
Q 000523 397 LLSDGQIVYQGPRELVL 413 (1445)
Q Consensus 397 lL~~G~ivy~G~~~~~~ 413 (1445)
+|++|++++.|+.+++.
T Consensus 204 vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 204 LLKGGKMLASGRREEVL 220 (231)
T ss_dssp BEETTEECCCSBHHHHS
T ss_pred EEECCEEEEECCHHHHH
T ss_conf 99799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-37 Score=257.94 Aligned_cols=196 Identities=19% Similarity=0.276 Sum_probs=137.2
Q ss_pred EEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 24880411255153023551545785488542167761881899974799984789975708988873789999969117
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~ 925 (1445)
.++.+|+++.++ +.+|+|+|+.+++|++++|+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80010214778615888899989989999988720899999889999999999992996322232369887767988998
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1445)
.. .+..++|++|+..+...+|++|.+.+.+.++... .+.+ .+.+.++.+++.+.... ...|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~------~~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKN----EIMDALESVEVLDLKKK------LGELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCHH----HHHHHHHHTTCCCTTSB------GGGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCHH----HHHHHHHHCCCCCCCCC------CCCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-3799----99999987488563012------6868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEEC
Q ss_conf 999999985199788993999999999999999999998848998999946853999986461869924
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074 (1445)
Q Consensus 1006 Rlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~ 1074 (1445)
|+.||++|+.+|++++|||||+|||..++..+++.++++.+.+.++|+++|+. .+.+|.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.5e-36 Score=251.70 Aligned_cols=183 Identities=20% Similarity=0.283 Sum_probs=149.5
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 46414146784892999985999977999999948989999811299996833798675631899837888799999999
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE 245 (1445)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++.+. +..++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---78899998962673--670899950135788828999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99976771178741456599899998719999999789999986333447699999999909954355433464466677
Q 000523 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1445)
Q Consensus 246 tl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glS 325 (1445)
++.+.+.+.+.....+ .+...++.+++.+. +..++ .||
T Consensus 90 ~l~~~~~~~~~~~~~~------------------------------------~~~~~l~~~~~~~~-~~~~~-----~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVNKN------------------------------------EIMDALESVEVLDL-KKKLG-----ELS 127 (200)
T ss_dssp HHHHHHHHTTCCCCHH------------------------------------HHHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHHCCCCCCHH------------------------------------HHHHHHHHCCCCCC-CCCCC-----CCC
T ss_conf 9999997548863799------------------------------------99999987488563-01268-----689
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 434568999999734985242226998999898999999999987703986999980691048830581999559
Q 000523 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1445)
Q Consensus 326 GGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~ 400 (1445)
||||||+.+|++++.+|++++|||||+|||..+...+++.++++.+ .+++++++.||. ...+|.+..|.+
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~-~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 7188889999988649989998686201699999999999999986-799999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.35 E-value=1.4e-14 Score=108.46 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 798899899999998519978899399999999999999999999884-8998999946853999986461869924959
Q 000523 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1077 (1445)
Q Consensus 999 lSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG~ 1077 (1445)
+++|++++..++.++..+|+++++|||+...+ .....+..+.++.+ .+.+++++.|+.+ .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEECC
Q ss_conf 999769
Q 000523 1078 EIYVGP 1083 (1445)
Q Consensus 1078 ~vY~Gp 1083 (1445)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.28 E-value=3.3e-13 Score=99.50 Aligned_cols=158 Identities=14% Similarity=0.053 Sum_probs=96.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCC--EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9998599997799999994898999981129999683379867563--18998378887999999999997677117874
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR--TAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~--~~~yv~Q~d~~~~~lTVrEtl~f~~~~~g~~~ 258 (1445)
++|.||||||||||+++|+|.+++. .|.+...+.+......+. .+.++..........+..+...+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------G 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE--------T
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_conf 9999899938999999998148888---6469987713288887653112336677788754113455443--------0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 14565998999987199999997899999863334476999999999099543554334644666774345689999997
Q 000523 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1445)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~~~glSGGqrkRvsia~~l 338 (1445)
+ ..+ +.....+++|+++|..+++++
T Consensus 72 ~------------------------------------------------------~~~-~~~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 72 S------------------------------------------------------YGV-NVQYFEELAIPILERAYREAK 96 (178)
T ss_dssp T------------------------------------------------------EEE-CHHHHHHHHHHHHHHHHHHHH
T ss_pred H------------------------------------------------------HHC-CCCHHHHHHHHHHHHHHHHHH
T ss_conf 2------------------------------------------------------303-762566532013789999997
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 3498524222699899989899999999998770398699998069104883058199955973998439
Q 000523 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1445)
Q Consensus 339 ~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~ivy~G~ 408 (1445)
..+|+++++|||.... .........+.+.....+.+++++.|+ .+.....|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~--~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPI--RDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCS--SCCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHHCEEEEEECCEEEEECC
T ss_conf 4099742302777310--045799999998750579789999744--77898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=2.1e-08 Score=68.20 Aligned_cols=72 Identities=22% Similarity=0.233 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 76798899899999998----5199788993999999999999999999998848998999946853999986461869
Q 000523 997 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1071 (1445)
Q Consensus 997 ~glSgGqrkRlsia~~L----~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~ill 1071 (1445)
..+|.|||+.+.++..+ ..+|++++.|||-++|++.....+.+.++..++ +.-||+|+|.| .+.+.+|++..
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEE
T ss_conf 102577766777776655654226744554320335797899999999998554-88799998988--99973242899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=2.1e-08 Score=68.09 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHH----HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 666774345689999997----3498524222699899989899999999998770398699998069104883058199
Q 000523 321 IRGISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 321 ~~glSGGqrkRvsia~~l----~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~ 396 (1445)
...+|+|||+...++..+ ..++++++.|||-++|++.....+.+.|+.... +.-+++ +.|+|++++.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvii--tTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIV--ITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEE--ECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEE--EECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--887999--989889997324289
Q ss_pred E--ECCC
Q ss_conf 9--5597
Q 000523 397 L--LSDG 401 (1445)
Q Consensus 397 l--L~~G 401 (1445)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=6.9e-09 Score=71.30 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEE
Q ss_conf 76798899899999998----51997889939999999999999999999988489989999468539999864618699
Q 000523 997 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1072 (1445)
Q Consensus 997 ~glSgGqrkRlsia~~L----~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL 1072 (1445)
..+|||||.++++|.-+ ..++++++||||+++||......+.+.|++....+.-+|+|+|+| .+.+..|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=3.9e-07 Score=59.89 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHH----HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 666774345689999997----3498524222699899989899999999998770398699998069104883058199
Q 000523 321 IRGISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1445)
Q Consensus 321 ~~glSGGqrkRvsia~~l----~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~ 396 (1445)
+.-+|||||.++++|-.+ +.+++++++|||.++||+.....+.+.|+.+.. ..+-++ +..|.|++.+.+|.++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I-~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFI-VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEE-EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728--998899-9958789997366179
Q ss_pred EE
Q ss_conf 95
Q 000523 397 LL 398 (1445)
Q Consensus 397 lL 398 (1445)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.85 E-value=6.9e-05 Score=45.24 Aligned_cols=61 Identities=8% Similarity=0.169 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 99899999998519978899399999999999999-9999998848998999946853999986
Q 000523 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPSIDIFEA 1065 (1445)
Q Consensus 1003 qrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i-~~~l~~~~~~g~tvi~tiHqps~~i~~~ 1065 (1445)
|-++++-....+.+.+++++||..+|=++.....+ ...+..+.+.+..+++++|.. ++.++
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 678898775028977278554545686233200258888888862376137865202--33322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=0.00012 Score=43.55 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 9999999851997889939999999999999999-99998848-998999946853
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPS 1059 (1445)
Q Consensus 1006 Rlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~-~l~~~~~~-g~tvi~tiHqps 1059 (1445)
|+.-......+.+++++||+.+|=++.....+.. .+..+... +..+++|+|...
T Consensus 110 ~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 110 ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 99999974546608853222358774566678987645432045442898524687
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.67 E-value=7.8e-05 Score=44.88 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=17.2
Q ss_pred EECCEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 54216776188189997479998478997570
Q 000523 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 875 L~~vs~~i~pGe~~al~G~sGaGKTTLl~~La 906 (1445)
|+++.+-++||+++.|.|++|+||||++.-++
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 88874697898089999479997999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.66 E-value=0.00039 Score=40.30 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=29.1
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 64141467848929999859999779999999489
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
-|+++.+=++||++++|.|+||+|||||+.-++-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 68887469789808999947999799999999972
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.51 E-value=2.3e-05 Score=48.39 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEECCCHHHHHH
Q ss_conf 689999997349852422269989998989999999-99987703986999980691048830
Q 000523 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPAPETYDL 391 (1445)
Q Consensus 330 kRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~-L~~~~~~~~~t~iisl~Q~~~~~~~~ 391 (1445)
+|++-.-...+...++++||+.+|-|+.....+... +..+.. .+..++++.|.+ ++..+
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEECH--HHHHH
T ss_conf 8898775028977278554545686233200258888888862-376137865202--33322
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.48 E-value=0.00056 Score=39.30 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=18.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 467848929999859999779999999489
Q 000523 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.|-+++|++++|.||||+|||+|+.-++-.
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 689869849999918999999999999999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.0035 Score=34.07 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=11.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 88189997479998478997570
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~La 906 (1445)
||+++.|.|++|+|||||+--|+
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 89589999289998999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.30 E-value=0.0001 Score=44.08 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=16.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999985999977999999948989
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
|+.++++|+||.|||||+|+|.|...
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 98089978898778888773053555
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=6.9e-05 Score=45.21 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=32.3
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEECCC
Q ss_conf 349852422269989998989999999-99987703986999980691
Q 000523 339 VGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPA 385 (1445)
Q Consensus 339 ~~~~~vl~lDEptsgLDs~t~~~i~~~-L~~~~~~~~~t~iisl~Q~~ 385 (1445)
..+..++++||+.+|-++.....+... +..+.......++++.|.+.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 546608853222358774566678987645432045442898524687
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.13 E-value=0.00019 Score=42.41 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=19.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.00025 Score=41.52 Aligned_cols=27 Identities=26% Similarity=0.598 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 881899974799984789975708988
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
+|..++++|+||+|||||+|.|.+...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 698089978898778888773053555
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.00019 Score=42.34 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999779999999489899
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.93 E-value=0.00021 Score=42.13 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999985999977999999948989
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
|++..|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0098 Score=31.17 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=31.5
Q ss_pred HHCCCCCCEEECCCC---C--CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCH
Q ss_conf 734985242226998---9--998989999999999877039869999806910
Q 000523 338 MVGPALALFMDEIST---G--LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1445)
Q Consensus 338 l~~~~~vl~lDEpts---g--LDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~ 386 (1445)
...+++++++|..+. + -|......+++.|+.++...+.++++ +||...
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~-v~H~~K 181 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASK 181 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--
T ss_pred HCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEH-HHHCCC
T ss_conf 52676589628135422665232256899998877776447975401-310055
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.82 E-value=0.0002 Score=42.15 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=24.6
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 167761881899974799984789975708988
Q 000523 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 878 vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
+...++.+.-+.+.|+.||||||||++|.+...
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999998378889994035662578999865301
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.82 E-value=0.00012 Score=43.76 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 929999859999779999999489899998112999
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~ 213 (1445)
|+.++++|+||.|||||+|+|.|...-. +|+|.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 5649998778734878987515176764---03555
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00027 Score=41.33 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=16.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998599997799999994898
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.+.+..|+|||||||||+.+.|+.++
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87189998999989899999999986
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.69 E-value=0.00051 Score=39.56 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 81899974799984789975708988
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
|.++.|+||||||||||++.|..+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.69 E-value=0.0006 Score=39.08 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=15.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998599997799999994898
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.|.++.|.|+|||||||+-++|+-++
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97699988999999999999999998
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.68 E-value=0.00031 Score=40.93 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999859999779999999489899
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
+...|+|++|||||||+..|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0006 Score=39.08 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=22.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4678489299998599997799999994898
Q 000523 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.|-+++|+++.|.||||||||||+.-++...
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 5898599799999589999999999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.61 E-value=0.00097 Score=37.72 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=36.6
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEE
Q ss_conf 99998519978899399999999999999999999884899899994685399998646186
Q 000523 1009 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1070 (1445)
Q Consensus 1009 ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~il 1070 (1445)
+...|=.+|++|+..|.. |..++...+ +.+.+|+.|+.|+|-.+ .+...++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676--676654321
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.60 E-value=0.00042 Score=40.11 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+.++|.||||||||||.+.|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.58 E-value=0.00053 Score=39.43 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=17.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.+++|.|||||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00084 Score=38.12 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=13.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998599997799999994898
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
|.+..|+||||||||||.+.|.-..
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8099999999999999999998639
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.57 E-value=0.00063 Score=38.94 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=23.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999859999779999999489899
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
...+++.||||+|||||.++|++.+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.53 E-value=0.00063 Score=38.93 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+|-.++|.|||||||||+.+.|+-+++
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.013 Score=30.28 Aligned_cols=27 Identities=41% Similarity=0.652 Sum_probs=16.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+.+-+++.||||+|||++.++|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.47 E-value=0.001 Score=37.58 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999859999779999999489
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
+++.+.|||||||||+.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.00018 Score=42.51 Aligned_cols=27 Identities=41% Similarity=0.640 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 299998599997799999994898999
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~~ 205 (1445)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 699998899971999999999999977
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.46 E-value=0.00076 Score=38.43 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
++.|.|++||||||+.+.|+.+
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999997
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.43 E-value=0.0012 Score=37.20 Aligned_cols=26 Identities=42% Similarity=0.632 Sum_probs=18.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998599997799999994898
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
+|-.+.|+|||||||||..+.|+-++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.42 E-value=0.001 Score=37.55 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.++++||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.41 E-value=0.0003 Score=41.04 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88189997479998478997570898
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+|..+.++|+||+|||||+|.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.39 E-value=0.0017 Score=36.19 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=25.6
Q ss_pred EEC-CEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 414-14678489299998599997799999994898
Q 000523 168 LKD-VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 168 L~~-vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
|++ +.|-+++|+++.|.|+||+|||||+.-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997207986288599999179999899999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.39 E-value=0.0011 Score=37.49 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=10.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999747999847899757089
Q 000523 888 TALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr 908 (1445)
++|+|++|+|||||++.|+|.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.38 E-value=0.0012 Score=37.22 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88189997479998478997570898
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.37 E-value=0.001 Score=37.54 Aligned_cols=23 Identities=52% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
++|.|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.001 Score=37.58 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
+++|.|++|||||||++.|+.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.34 E-value=0.0012 Score=37.09 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998599997799999994898
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.31 E-value=0.00091 Score=37.90 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=21.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489299998599997799999994898
Q 000523 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
+.+.++.|+|||||||||+.+.|+-++
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0012 Score=37.08 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88189997479998478997570898
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.|.++.|+||||+|||||.+.|.-+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.26 E-value=0.0013 Score=36.88 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++|+|+||+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.25 E-value=0.023 Score=28.77 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=20.2
Q ss_pred EECC-EEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 5421-677618818999747999847899757
Q 000523 875 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVL 905 (1445)
Q Consensus 875 L~~v-s~~i~pGe~~al~G~sGaGKTTLl~~L 905 (1445)
|+++ .|-+++|+++.|.|++|+|||+|..-+
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 98855689969839999947999999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.24 E-value=0.0016 Score=36.25 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=34.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 29999859999779999999489899998112999968337986756318998378
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH 234 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~ 234 (1445)
.-++++||+|+|||-|.+.||+.++. --+..++..++ .+|||..+
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 64799899998899999999987389-----88986255114------11111044
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.0011 Score=37.28 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.++.|+|||||||||+.+.|+.++.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999998999999999859
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0013 Score=36.84 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=23.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 467848929999859999779999999489
Q 000523 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.|=+++|+++.|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.16 E-value=0.0019 Score=35.84 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999859999779999999489899
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
++++|.|+|||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.14 E-value=0.013 Score=30.42 Aligned_cols=24 Identities=50% Similarity=0.724 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
-+++.||||+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.13 E-value=0.002 Score=35.69 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=16.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 892999985999977999999948
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG 200 (1445)
.-++++++|+|||||||+.+.++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.12 E-value=0.0059 Score=32.60 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||+++|.|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0013 Score=37.00 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=14.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998599997799999994898
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.-.++|.||||||||||++.|...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289743899998999999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0022 Score=35.43 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.+.|+|||||||||..+.|+-++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.002 Score=35.75 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+.|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0012 Score=37.15 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=13.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998599997799999994898
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
|..+.+.|+|||||||+-+.|+-++
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9699988999999999999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.02 E-value=0.002 Score=35.72 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 892999985999977999999948989999811299996833
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~ 218 (1445)
|+.-.+++||||+|||.|.++||..+.. --+.+++.+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~-----~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC-----CHHCCCCCC
T ss_conf 9866999899998888999998621322-----100034433
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0021 Score=35.53 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188189997479998478997570898
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.00011 Score=44.00 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=23.5
Q ss_pred EECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 41414678489299998599997799999994898
Q 000523 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 168 L~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 70279974998-08998899998799999999996
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.98 E-value=0.002 Score=35.71 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.+.|+|||||||||+.+.|+-++
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.96 E-value=0.0023 Score=35.28 Aligned_cols=28 Identities=39% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4678489299998599997799999994
Q 000523 172 SGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~La 199 (1445)
.|=+++|++++|.||||||||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0001 Score=44.04 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=27.2
Q ss_pred EEECCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8542167761881899974799984789975708
Q 000523 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 874 iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
-.++.+..+.+| ++.|+|+|||||||+|++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.91 E-value=0.0025 Score=35.09 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188189997479998478997570898
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+.|.++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.0027 Score=34.88 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.87 E-value=0.0029 Score=34.60 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1881899974799984789975708988
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
++|-.+.|+|++||||||+.+.|+-+..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.85 E-value=0.035 Score=27.60 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=27.0
Q ss_pred EEEC-CEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 6414-14678489299998599997799999994
Q 000523 167 ILKD-VSGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 167 iL~~-vs~~i~pG~~~~ilGp~GsGKSTLL~~La 199 (1445)
-|++ ++|-+++|+++.|.|+||+|||+|+.-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 7988556899698399999479999999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.85 E-value=0.0025 Score=35.00 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++++|+|++|||||+++|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0032 Score=34.33 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=32.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 29999859999779999999489899998112999968337986756318998378887999
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1445)
-+++|.|++||||||+.+.|...+... .....+..++++|.|.+.
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 899996899998768999999997304-----------------689965999521568984
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.83 E-value=0.0033 Score=34.27 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.|.|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.82 E-value=0.0019 Score=35.82 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCC
Q ss_conf 89997479998478997570898-88737899999691
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGY 923 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~-~~~~~~G~i~i~G~ 923 (1445)
.++|+|++|||||||+..|..+. ..|..-|.|.-+++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99998099998999999999999867983799983167
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.82 E-value=0.0028 Score=34.78 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+.|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999879
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.0027 Score=34.79 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.++|+|+|++|||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0021 Score=35.58 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.+.|.|||||||||+.+.|+-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.77 E-value=0.003 Score=34.51 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.++|+|||||||||+.+.|+-++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 699988999987999999999979
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0026 Score=34.96 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+.+.|+||+|+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.74 E-value=0.0028 Score=34.77 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=14.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 929999859999779999999489
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.-.++|.||||+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 159861179988899999999998
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.70 E-value=0.0037 Score=33.91 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.+++++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.69 E-value=0.0024 Score=35.17 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999779999999489899
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
-++|+|||||||+||++.|+...+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.68 E-value=0.0035 Score=34.13 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
..|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.68 E-value=0.0033 Score=34.29 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-++|+|++|+|||||++.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0033 Score=34.25 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 46784892999985999977999999948
Q 000523 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG 200 (1445)
.|-+++|++++|.||||+|||+|..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.003 Score=34.55 Aligned_cols=25 Identities=44% Similarity=0.655 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
...++.||||+||||+.++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.66 E-value=0.0022 Score=35.42 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99974799984789975708
Q 000523 888 TALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag 907 (1445)
+||+|++++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0033 Score=34.29 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
..++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.0037 Score=33.93 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
+.++|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.63 E-value=0.0037 Score=33.93 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++|+|.+|+|||||+|.|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.62 E-value=0.0021 Score=35.54 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
++|+|+|++|||||++.|+|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.60 E-value=0.003 Score=34.51 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
.+++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.60 E-value=0.0042 Score=33.56 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.++|-|||||||||..+.|+-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0044 Score=33.48 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=15.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8189997479998478997570898
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
|-.++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.58 E-value=0.0049 Score=33.16 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8189997479998478997570898
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+-.+|++|.+|+|||||++.|.|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0045 Score=33.41 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+++|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.52 E-value=0.0039 Score=33.83 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
++||-|++|||||||.+.|+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.51 E-value=0.0038 Score=33.89 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
+.|+||||||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0054 Score=32.85 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8818999747999847899757089
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
+..-+.|.||+|+|||++.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.49 E-value=0.0033 Score=34.31 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189997479998478997570898
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.49 E-value=0.0047 Score=33.27 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
-++|+|.||+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.45 E-value=0.0047 Score=33.28 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
..|+|+|||||||+.++||-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.0041 Score=33.62 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997479998478997570898
Q 000523 888 TALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.0033 Score=34.25 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=13.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
-+.|.||+|+|||+|.+.+++.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 5788789987630477887877
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.0047 Score=33.27 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+||+|.+|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.005 Score=33.07 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1899974799984789975708988
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
..+.|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0065 Score=32.33 Aligned_cols=25 Identities=44% Similarity=0.728 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998599997799999994898
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
|=-++++|++++|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.38 E-value=0.0044 Score=33.44 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.+.++|+|||||||+-+.||-++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0056 Score=32.77 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+++|-||+||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.37 E-value=0.0054 Score=32.87 Aligned_cols=27 Identities=44% Similarity=0.592 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
|-.-+++.||||+|||++.++|+..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.35 E-value=0.005 Score=33.10 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.35 E-value=0.0064 Score=32.39 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++|+|.+|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.34 E-value=0.0054 Score=32.88 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.34 E-value=0.0054 Score=32.89 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0055 Score=32.80 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999747999847899757089
Q 000523 888 TALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr 908 (1445)
++++|.+++|||||+|.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.32 E-value=0.0043 Score=33.53 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-+.+.||+|+|||+|.++|++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.32 E-value=0.0052 Score=32.98 Aligned_cols=26 Identities=46% Similarity=0.670 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998599997799999994898999
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLDPT 205 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~ 205 (1445)
-+++.||||+||||+.++|+..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.0043 Score=33.49 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899974799984789975708988
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
.++|+|++|+|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.31 E-value=0.0049 Score=33.12 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0046 Score=33.34 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=26.1
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 677618818999747999847899757089
Q 000523 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 879 s~~i~pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.|-+++|+++.|.|++|+|||||..-++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 589859979999958999999999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.30 E-value=0.0045 Score=33.41 Aligned_cols=25 Identities=44% Similarity=0.651 Sum_probs=15.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+-+++.||||+|||++.++++....
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 6468766998883089999998748
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0081 Score=31.73 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7761881899974799984789975708
Q 000523 880 GAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 880 ~~i~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
|-+++|.++-+.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0069 Score=32.16 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.++++|.+++|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.27 E-value=0.0032 Score=34.32 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999859999779999999489899
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
++..|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.27 E-value=0.0039 Score=33.80 Aligned_cols=21 Identities=38% Similarity=0.611 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++|+|.|++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.24 E-value=0.057 Score=26.20 Aligned_cols=151 Identities=19% Similarity=0.134 Sum_probs=74.9
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 6776188189997479998478997570898-887378999996911780010214778615888899989989999988
Q 000523 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 957 (1445)
Q Consensus 879 s~~i~pGe~~al~G~sGaGKTTLl~~Lagr~-~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa 957 (1445)
.|-+++|.++.|.|++|+|||+|..-++-.. ..+. .+.|+.-+ .+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~e------~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAYE------ESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEESS------SCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEECC------CCHHHHHHHHH
T ss_conf 689869849999918999999999999999987232-------------------44112126------79999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HHCCCEEEEECCCC---CCCHH
Q ss_conf 72089999988999999999999299632223236988776798899899999998--51997889939999---99999
Q 000523 958 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEPTS---GLDAR 1032 (1445)
Q Consensus 958 ~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L--~~~p~il~lDEPTs---GLD~~ 1032 (1445)
... . +.. +. ...+.....+... ......+. +...... -.+|++++.|--+. +.+..
T Consensus 75 ~~~--~--~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~--~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 75 SWG--M--DFE-------EM-ERQNLLKIVCAYP-----ESAGLEDH--LQIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp TTS--C--CHH-------HH-HHTTSEEECCCCG-----GGSCHHHH--HHHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HCC--C--CHH-------HH-HHCCCEEEEEEEC-----CHHHHHHH--HHHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 829--9--869-------98-5458617997300-----01017999--9999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCC---------CHHHHHHHCEEEEEE
Q ss_conf 9999999999988-4899899994685---------399998646186992
Q 000523 1033 AAAIVMRTVRNTV-DTGRTVVCTIHQP---------SIDIFEAFDELFLMK 1073 (1445)
Q Consensus 1033 ~a~~i~~~l~~~~-~~g~tvi~tiHqp---------s~~i~~~fD~illL~ 1073 (1445)
.....+..+.+.+ +.+.+++++.|.. +..+....|.++.|.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999999998698399998567512554457764046421699999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.24 E-value=0.0057 Score=32.69 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1899974799984789975708
Q 000523 886 VLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lag 907 (1445)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.19 E-value=0.0052 Score=33.00 Aligned_cols=24 Identities=50% Similarity=0.720 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
-+++-||||+||||+.+++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.16 E-value=0.0053 Score=32.90 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 4678489299998599997799999994898999
Q 000523 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1445)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~ 205 (1445)
...++.+..++|.||+||||||+|++|.+..+++
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9999837888999403566257899986530145
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.16 E-value=0.0071 Score=32.11 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999859999779999999489899
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
.+++.|.|||||||||+.+.|+.++..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~~ 29 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 859999899999989999999997289
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.16 E-value=0.0056 Score=32.74 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999747999847899757089
Q 000523 888 TALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr 908 (1445)
+.|+||||||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.15 E-value=0.0051 Score=33.05 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
-++++|++|+|||||++.|.+...
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999967887
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.15 E-value=0.0074 Score=31.96 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++++|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.14 E-value=0.0066 Score=32.30 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+.++|+|||||||+-+.|+.++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.13 E-value=0.0051 Score=33.01 Aligned_cols=29 Identities=38% Similarity=0.594 Sum_probs=20.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 48929999859999779999999489899
Q 000523 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
.|+-++++.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.09 E-value=0.0086 Score=31.55 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8929999859999779999999489899
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
+...++|.||||+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.09 E-value=0.0068 Score=32.22 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189997479998478997570898
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.07 E-value=0.0075 Score=31.94 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++|+|++.+|||||+++|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.07 E-value=0.0043 Score=33.54 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997479998478997570898
Q 000523 888 TALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+||+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.007 Score=32.12 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.05 E-value=0.008 Score=31.76 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=10.1
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 189997479998478997570
Q 000523 886 VLTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~La 906 (1445)
..+.|.|++|+|||||++.++
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 879998699982999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.006 Score=32.57 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++|+|.+++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.99 E-value=0.0068 Score=32.23 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+.|+|++||||||+.+.|+-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.97 E-value=0.0087 Score=31.53 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
++++|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.012 Score=30.69 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
-++||.|++||||||+-+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.94 E-value=0.0067 Score=32.24 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189997479998478997570898
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-.++|+|++|+|||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.92 E-value=0.011 Score=30.91 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=14.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998599997799999994898
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.|.++.+.|.|||||||+.+.|.-++
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699998999999899999999887
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.90 E-value=0.0069 Score=32.19 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.87 E-value=0.025 Score=28.56 Aligned_cols=34 Identities=29% Similarity=0.207 Sum_probs=22.4
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 64141467848929999859999779999999489
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.+|.... .-.|.-+++.|+||+|||||...|..+
T Consensus 5 ~~H~~~v-~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLL-EVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEE-EETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEE-EECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 1789999-999999999818999989999999985
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.77 E-value=0.0035 Score=34.08 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999859999779999999489899
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
.-+++.||||+|||||.+.+++.+++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 70899889985299999999873798
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.77 E-value=0.0099 Score=31.15 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++.|+||+||||||+-+.|+-.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.011 Score=30.80 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=13.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299998599997799999994898
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.|.++++-|+.||||||+.+.|...+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 80599998998889999999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.0079 Score=31.78 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
++++|+|++|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.0045 Score=33.39 Aligned_cols=26 Identities=42% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88189997479998478997570898
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.|.++.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.005 Score=33.10 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
-.++++|+|++|||||+++|.|.-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.64 E-value=0.011 Score=30.83 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
-++++|.+|+|||||++.|.+.-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.63 E-value=0.012 Score=30.61 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18818999747999847899757089
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
++|-.+.|+||.||||||.-+.|+-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.0089 Score=31.47 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189997479998478997570898
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
..+.|.||+|+|||||+..++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.60 E-value=0.013 Score=30.30 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=10.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999859999779999999489
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
..++++||+|+||||.+--||.+
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999889999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.57 E-value=0.0078 Score=31.83 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999859999779999999489899
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
+++.+|-|+.||||||+++.|+..+..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 988999878887799999999999735
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.53 E-value=0.0066 Score=32.29 Aligned_cols=28 Identities=43% Similarity=0.411 Sum_probs=22.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4892999985999977999999948989
Q 000523 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+.++.+++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.52 E-value=0.01 Score=31.10 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
++++|.+|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.012 Score=30.49 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++-||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.46 E-value=0.012 Score=30.56 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.011 Score=30.78 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8818999747999847899757089
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
..-.++|.|+.|||||||++.|...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8328974389999899999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.45 E-value=0.03 Score=28.03 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=22.9
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 64141467848929999859999779999999489
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.+|. +.....|.=+++.|+||+||||+...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.44 E-value=0.011 Score=30.91 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
-+++|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.31 E-value=0.013 Score=30.43 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.++|+|++.+|||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.30 E-value=0.015 Score=30.03 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8189997479998478997570898
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-.++.|+||+||||||+-+.|+.+.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.30 E-value=0.049 Score=26.62 Aligned_cols=24 Identities=42% Similarity=0.361 Sum_probs=12.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998599997799999994898
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.+.+++||+|+||||.+--||.++
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.017 Score=29.60 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=18.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.|..+++-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.26 E-value=0.013 Score=30.44 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997479998478997570898
Q 000523 888 TALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+||+|...||||||++.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.25 E-value=0.027 Score=28.28 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=21.6
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 64141467848929999859999779999999489
Q 000523 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.+| -+...-.|.-+++.|+||+||||+...|..+
T Consensus 4 ~lH-~~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMH-GVLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEE-EEEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEE-EEEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 289-9999999999999808999989999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=0.013 Score=30.38 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.23 E-value=0.015 Score=29.97 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599997799999994
Q 000523 180 LTLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1445)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.16 E-value=0.015 Score=29.89 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+||.||+||||||+-+.|+-..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.15 E-value=0.0087 Score=31.52 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999985999977999999948989999811299996833798675631899837888799
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 239 (1445)
+++|.|+|||||||+.++|...+... .-.++.++|++.|-.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-------------------~v~~~iI~~Dsfyr~ 46 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-------------------GVKAVSIEGDAFHRF 46 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-------------------TCCEEEEEGGGGBSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------------------CCCEEEEECCCCCCC
T ss_conf 99998999780999999999997156-------------------997699947778756
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.016 Score=29.79 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++.||||+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.11 E-value=0.013 Score=30.36 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.09 E-value=0.016 Score=29.74 Aligned_cols=23 Identities=43% Similarity=0.790 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.++.||+|+||||+.++++..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.09 E-value=0.032 Score=27.82 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
-++|+|-|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.04 E-value=0.013 Score=30.36 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.|+||+||||||+.+.|+-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.04 E-value=0.015 Score=29.98 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997479998478997570898
Q 000523 888 TALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+.|+|++||||||+-+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.03 E-value=0.024 Score=28.70 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 818999747999847899757089
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr 908 (1445)
..++.++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.02 E-value=0.014 Score=30.21 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-++|+|+.|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.00 E-value=0.02 Score=29.18 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=20.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1881899974799984789975708
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
+.-+++-++|++||||||+.+-|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.00 E-value=0.016 Score=29.83 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.016 Score=29.81 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+.|.|++||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.94 E-value=0.02 Score=29.23 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.91 E-value=0.021 Score=29.06 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEEC
Q ss_conf 88189997479998478997570898-887378999996
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITIS 921 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr~-~~~~~~G~i~i~ 921 (1445)
..-.++|.|+.|||||||++.|.... ..|.--|-+.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.90 E-value=0.0097 Score=31.21 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+..+.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.89 E-value=0.016 Score=29.75 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.3
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 67761881899974799984789975708
Q 000523 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 879 s~~i~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
.|-+++|+++.|.|++|+||||+..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.88 E-value=0.019 Score=29.35 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++.++|.+|+||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.88 E-value=0.015 Score=29.94 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=23.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6188189997479998478997570898
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 882 i~pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
++.+.++.|+||+||||||+-+.|+.+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.88 E-value=0.093 Score=24.80 Aligned_cols=36 Identities=31% Similarity=0.297 Sum_probs=28.0
Q ss_pred EEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8854216776188189997479998478997570898
Q 000523 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 873 ~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
..+|.....+ .|.-+.+.|+||+|||||...|..+-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 3178999999-99999998189999899999999859
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.87 E-value=0.016 Score=29.76 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=25.1
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 67761881899974799984789975708
Q 000523 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 879 s~~i~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
.|-+++|.++.|.|++|+|||||..-++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.85 E-value=0.019 Score=29.24 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8189997479998478997570898
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.-.++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.85 E-value=0.022 Score=28.94 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18818999747999847899757089
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
+.|.++-+.|.|||||||+-+.|+.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.83 E-value=0.017 Score=29.65 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1899974799984789975708988
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
..+.|.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.025 Score=28.49 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=26.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 89299998599997799999994898999981129999683
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~ 217 (1445)
|....+++||+|+|||.|.+.||..+. ..-|.+|..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s 86 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMS 86 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC-----CCEEEECCC
T ss_conf 765899977875006999999986336-----770674154
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.023 Score=28.74 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=32.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 29999859999779999999489899998112999968337986756318998378887999999999997
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrEtl~f 249 (1445)
=+++|-|++|||||||...|.-.+... .| ....++.++.+|.+. |-.|-...
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY~---t~~~r~~L 79 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFYL---THEDQLKL 79 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGBC---CHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCCC---CHHHHHHH
T ss_conf 899837998788999999999999987---27-------------786067635677778---88999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.78 E-value=0.019 Score=29.30 Aligned_cols=21 Identities=57% Similarity=0.722 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.022 Score=28.88 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=22.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18818999747999847899757089
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
+.|.+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.74 E-value=0.031 Score=27.95 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=21.9
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 776188189997479998478997570898
Q 000523 880 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 880 ~~i~pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
...+.| .+.+.||+|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 436886-38887799850889999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.73 E-value=0.017 Score=29.63 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99974799984789975708
Q 000523 888 TALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag 907 (1445)
+.|.||+|+||||+...++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99889999988999999997
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.62 E-value=0.02 Score=29.16 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-+.|+|++||||||+-+.||-+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.022 Score=28.83 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.|+||+||||||.-+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.60 E-value=0.03 Score=28.05 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
++++|+..+|||||+++|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.60 E-value=0.026 Score=28.38 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=10.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|..+||||||+++|.|.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHCC
T ss_conf 999818989799999999689
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.59 E-value=0.017 Score=29.61 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=15.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299998599997799999994898
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
...++++||+|+||||.+--||-++
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9899998999998899999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.56 E-value=0.028 Score=28.22 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1899974799984789975708988
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
-.++++|.+|+|||||++.|.+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999898999999966888
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.51 E-value=0.021 Score=29.04 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.51 E-value=0.025 Score=28.54 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998599997799999994898
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
..++++||+|+||||.+--||-++
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999999899999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.49 E-value=0.051 Score=26.50 Aligned_cols=36 Identities=28% Similarity=0.206 Sum_probs=27.0
Q ss_pred EEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8854216776188189997479998478997570898
Q 000523 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 873 ~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
..||.... .-.|.-+.++|+||+|||||.-.|..+-
T Consensus 3 ~~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 3 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 32899999-9999999998089999899999999859
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.031 Score=27.89 Aligned_cols=27 Identities=41% Similarity=0.463 Sum_probs=17.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.|.++++-|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.48 E-value=0.023 Score=28.80 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8818999747999847899757089
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
|+.-+.++||+|+|||.|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.39 E-value=0.026 Score=28.37 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
++|+|-|.+|||||+++|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.03 Score=28.04 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.025 Score=28.53 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 81899974799984789975708988
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
+.+.+|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.26 E-value=0.032 Score=27.81 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8818999747999847899757089
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+..++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.23 E-value=0.025 Score=28.47 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997479998478997570898
Q 000523 888 TALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.22 E-value=0.031 Score=27.92 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599997799999994
Q 000523 180 LTLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1445)
+++|.|++||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.22 E-value=0.033 Score=27.78 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=19.8
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 776188189997479998478997570
Q 000523 880 GAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 880 ~~i~pGe~~al~G~sGaGKTTLl~~La 906 (1445)
|-++.|.++.+.|++|+|||||.-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 986663369996488748899999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.20 E-value=0.024 Score=28.65 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.031 Score=27.91 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
..++++||+|+||||.+--||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.084 Score=25.10 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.15 E-value=0.014 Score=30.17 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.12 E-value=0.03 Score=27.99 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.|+||+||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.10 E-value=0.028 Score=28.22 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.07 E-value=0.0053 Score=32.93 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=9.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99974799984789975708
Q 000523 888 TALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag 907 (1445)
++++|.+++|||||++.|.|
T Consensus 3 I~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999999999999958
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.05 E-value=0.028 Score=28.22 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.01 E-value=0.026 Score=28.43 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 618818999747999847899757089
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 882 i~pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
+|+. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.01 E-value=0.044 Score=26.91 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7761881899974799984789975708
Q 000523 880 GAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 880 ~~i~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
|-++.|.++-+-|++|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.99 E-value=0.03 Score=28.01 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+..|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.046 Score=26.82 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
++++|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.038 Score=27.35 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599997799999994
Q 000523 180 LTLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1445)
+++|.|++||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.84 E-value=0.037 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.++++|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.029 Score=28.10 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999977999999948
Q 000523 181 TLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1445)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.046 Score=26.78 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.81 E-value=0.029 Score=28.08 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=23.6
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6776188189997479998478997570
Q 000523 879 SGAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 879 s~~i~pGe~~al~G~sGaGKTTLl~~La 906 (1445)
.|-+++|+++.|.|++|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.71 E-value=0.037 Score=27.39 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+.|+||.||||||+-+.|+-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.69 E-value=0.054 Score=26.33 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=27.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEC
Q ss_conf 99998599997799999994898999981129999683379867563189983
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYIS 232 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~ 232 (1445)
-++|+|-|.+|||||+++|++--.. ...++.+...|.-.+..|+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~---------~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIE---------AANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------CCCCCCCCSSEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---------CCCCCCCCCCCCEEEEECC
T ss_conf 4888899999889999999779974---------1369988877845899643
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.69 E-value=0.031 Score=27.89 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999977999999948
Q 000523 181 TLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1445)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.67 E-value=0.0074 Score=31.99 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
++++|+|++|||||+++|.|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.66 E-value=0.051 Score=26.51 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=19.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4892999985999977999999948989
Q 000523 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+||.++++-|+=|||||||.+.++..+.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9982999966877658899999876422
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.62 E-value=0.042 Score=27.08 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.62 E-value=0.042 Score=27.06 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.++.++|.||+|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.032 Score=27.85 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6776188189997479998478997570
Q 000523 879 SGAFRPGVLTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 879 s~~i~pGe~~al~G~sGaGKTTLl~~La 906 (1445)
.|-+++|.++.|.|++|+|||++.--++
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6997689799998899887889999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.042 Score=27.04 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.034 Score=27.63 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.044 Score=26.96 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=13.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998599997799999994898
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
..+.|+||.++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.48 E-value=0.037 Score=27.40 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=0.041 Score=27.10 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.053 Score=26.40 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=26.5
Q ss_pred EEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8542167761881899974799984789975708988
Q 000523 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 874 iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
+|+.++. |=.+++|+|+-++|||||||.|.|...
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9970799---879999889999979999999809987
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.045 Score=26.87 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 881899974799984789975708988
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
.|.++++-|+-||||||+.+.|+-+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.43 E-value=0.075 Score=25.42 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=15.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
|.=-++++|+..+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 970899997248869999999970412
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.037 Score=27.43 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998599997799999994898
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
-+++|.|.-||||||||+-+....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.061 Score=25.99 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999977999999948989
Q 000523 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
++++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.39 E-value=0.05 Score=26.59 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
++|-|+.||||||+++.|..++
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998998789999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.37 E-value=0.041 Score=27.10 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++||+||||||.-+.|+-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.35 E-value=0.036 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.049 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.31 E-value=0.049 Score=26.65 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCCEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 997889939999--999999999999999988489989999468539999864618699249599997699875016899
Q 000523 1016 NPSIIFMDEPTS--GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIS 1093 (1445)
Q Consensus 1016 ~p~il~lDEPTs--GLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~g~~~~~~~~ 1093 (1445)
.+.++++||.-. +-+......+++... .....++++........... +.+..+.+.+.|+.. ..+..
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~~---~~~~~ii~i~~~~~~~~~~~------l~~~~~~i~f~~~~~--~~i~~ 191 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPLILICNERNLPKMRP------FDRVCLDIQFRRPDA--NSIKS 191 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCEEEEESCTTSSTTGG------GTTTSEEEECCCCCH--HHHHH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCC------CCCEEEEEECCCCCH--HHHHH
T ss_conf 51377763011111000134677765401---23422211135555211353------244036531145314--67889
Q ss_pred HHHHC
Q ss_conf 98719
Q 000523 1094 YFEAI 1098 (1445)
Q Consensus 1094 yF~~~ 1098 (1445)
+.+.+
T Consensus 192 ~l~~i 196 (253)
T d1sxja2 192 RLMTI 196 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.23 E-value=0.038 Score=27.32 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.20 E-value=0.047 Score=26.74 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189997479998478997570898
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-.+.|+||.||||||+-+.|+-+.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.14 E-value=0.03 Score=28.06 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.13 E-value=0.048 Score=26.66 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
...|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.13 E-value=0.048 Score=26.68 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+||+|-..+|||||+++|+|-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.09 E-value=0.045 Score=26.86 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8818999747999847899757089
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
+-..++++||+|+||||.+-=||.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.09 E-value=0.042 Score=27.04 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999977999999948
Q 000523 181 TLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1445)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.038 Score=27.33 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.06 E-value=0.05 Score=26.58 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.04 Score=27.19 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.02 E-value=0.042 Score=27.07 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.046 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.00 E-value=0.055 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|.-+||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.043 Score=26.97 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.97 E-value=0.059 Score=26.09 Aligned_cols=21 Identities=52% Similarity=0.577 Sum_probs=14.9
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 299998599997799999994
Q 000523 179 RLTLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~La 199 (1445)
+.++|+|+.|+|||||..+|.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 099999488980999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.95 E-value=0.047 Score=26.76 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|.+|+|||||++-+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.94 E-value=0.055 Score=26.27 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8818999747999847899757089
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.|..+++-|+-||||||+.+.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.85 E-value=0.063 Score=25.91 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 29999859999779999999
Q 000523 179 RLTLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~L 198 (1445)
+-++|+|+.|||||||..+|
T Consensus 7 Rni~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHH
T ss_conf 29999958989989999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.84 E-value=0.049 Score=26.61 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999747999847899757089
Q 000523 888 TALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr 908 (1445)
+-|.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.84 E-value=0.058 Score=26.14 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|...||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.049 Score=26.65 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.77 E-value=0.053 Score=26.40 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8818999747999847899757089
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
...+++++||+|+||||.+-=||.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.75 E-value=0.081 Score=25.18 Aligned_cols=35 Identities=31% Similarity=0.223 Sum_probs=26.9
Q ss_pred EEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 885421677618818999747999847899757089
Q 000523 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 873 ~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.-+|. +...-.|.-+.+.|+||+|||||.-.|..+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 04889-999999999999808999999999999984
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.75 E-value=0.036 Score=27.53 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998789999998448
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.045 Score=26.87 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.045 Score=26.86 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599997799999994
Q 000523 181 TLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~La 199 (1445)
++++|++|+|||||++.+.
T Consensus 7 v~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989929899999997
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.046 Score=26.83 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999977999999948
Q 000523 181 TLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1445)
++++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.58 E-value=0.061 Score=26.00 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=47.1
Q ss_pred HCCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEE-EEECCCEEEEECCHHHH----
Q ss_conf 3498524222699899-98989999999999877039869999806910488305819-99559739984395679----
Q 000523 339 VGPALALFMDEISTGL-DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI-ILLSDGQIVYQGPRELV---- 412 (1445)
Q Consensus 339 ~~~~~vl~lDEptsgL-Ds~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i-~lL~~G~ivy~G~~~~~---- 412 (1445)
+...+++++|+.-.=. +..+...+.+.+..... .++.++++...+..+.-..-+++ --|..|-++.--|.++.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~i 173 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKI 173 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECCCCHHHHHH
T ss_conf 7621301011265505865778899999998763-166389954875100134326788886185689978882799999
Q ss_pred -HHHHHHCCCCCCCCCCHHHHHH
Q ss_conf -9999836997899999567998
Q 000523 413 -LEFFASMGFRCPKRKGVADFLQ 434 (1445)
Q Consensus 413 -~~~F~~lGf~cp~~~~~aDfl~ 434 (1445)
..++..-|+.+++ ++.+|+.
T Consensus 174 L~~~a~~rgl~l~~--~v~~yl~ 194 (213)
T d1l8qa2 174 IKEKLKEFNLELRK--EVIDYLL 194 (213)
T ss_dssp HHHHHHHTTCCCCH--HHHHHHH
T ss_pred HHHHHHHCCCCCCH--HHHHHHH
T ss_conf 99999982999999--9999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.56 E-value=0.062 Score=25.97 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
.++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.52 E-value=0.034 Score=27.66 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.46 E-value=0.064 Score=25.89 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.|+||.||||||+.+.|+-+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.45 E-value=0.086 Score=25.05 Aligned_cols=31 Identities=42% Similarity=0.618 Sum_probs=27.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6784892999985999977999999948989
Q 000523 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
|-+++|++|.+.||||||||||+..++....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9966735899805777478999999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.38 E-value=0.065 Score=25.83 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
++||.|..||||||..+.|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.054 Score=26.35 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.35 E-value=0.051 Score=26.49 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
-.++++|.+|+|||||++-+.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999889999887338
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.075 Score=25.42 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.07 Score=25.62 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=9.4
Q ss_pred CEEEEECCCCCCHHHHH
Q ss_conf 18999747999847899
Q 000523 886 VLTALMGVSGAGKTTLM 902 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl 902 (1445)
.++.|-|+.|+||||++
T Consensus 164 ~~~vI~G~pGTGKTt~i 180 (359)
T d1w36d1 164 RISVISGGPGTGKTTTV 180 (359)
T ss_dssp SEEEEECCTTSTHHHHH
T ss_pred CEEEEECCCCCCCEEHH
T ss_conf 85999768988752169
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=0.061 Score=26.02 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.077 Score=25.34 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 761881899974799984789975708
Q 000523 881 AFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 881 ~i~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
-+-.|+..+|.|++|+|||||+..++.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.072 Score=25.52 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.26 E-value=0.059 Score=26.11 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999977999999948
Q 000523 181 TLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1445)
++++|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999298999999973
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=91.26 E-value=0.047 Score=26.77 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=18.0
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 4641414678489299998599997799999
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~ 196 (1445)
.++++.. | -++|.|++||||||.|-
T Consensus 18 ~~v~~~~-----g-~~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 18 EAVRTTE-----G-PLLIMAGAGSGKTRVLT 42 (318)
T ss_dssp HHHHCCS-----S-CEEEEECTTSCHHHHHH
T ss_pred HHHHCCC-----C-CEEEEECCCCCHHHHHH
T ss_conf 9982999-----9-98999529866899999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.22 E-value=0.056 Score=26.22 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.21 E-value=0.076 Score=25.36 Aligned_cols=21 Identities=38% Similarity=0.278 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999977999999948
Q 000523 180 LTLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1445)
-++++|++++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.10 E-value=0.076 Score=25.38 Aligned_cols=29 Identities=38% Similarity=0.637 Sum_probs=25.1
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78489299998599997799999994898
Q 000523 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 174 ~i~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.+-.|+-.+|.|++|+|||||+..++...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 64578755686799988789999999977
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.056 Score=26.24 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
-.++|+|.+|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.09 E-value=0.059 Score=26.12 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999985999977999999948
Q 000523 179 RLTLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG 200 (1445)
+.++|+|++|||||++++.+.-
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 6589990799968999999999
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.08 E-value=0.057 Score=26.17 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 99998599997799999
Q 000523 180 LTLLLGPPSSGKTTLLL 196 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~ 196 (1445)
-++|.|+|||||||.|-
T Consensus 16 ~~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEEECCCTTSCHHHHHH
T ss_pred CEEEEEECCCCHHHHHH
T ss_conf 98999628843899999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.07 E-value=0.067 Score=25.75 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-+.+.||+|+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 48987999973889999998503
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.057 Score=26.20 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.02 E-value=0.084 Score=25.10 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8818999747999847899757089
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
|...+.++||+|.|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.95 E-value=0.086 Score=25.03 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=24.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 618818999747999847899757089
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 882 i~pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+||.+++|-|+=||||||+.+.++.-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799829999668776588999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.068 Score=25.69 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
-++++|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.84 E-value=0.061 Score=25.99 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.83 E-value=0.058 Score=26.14 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
=+.++||+|+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.062 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
-++++|.+|+|||||++.+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.097 Score=24.68 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.73 E-value=0.082 Score=25.17 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=11.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999859999779999999
Q 000523 180 LTLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L 198 (1445)
-++++|.+|+|||||++-+
T Consensus 8 KilllG~~~vGKTsll~~~ 26 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 7999989999889999989
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.13 Score=23.97 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
-++++|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.71 E-value=0.1 Score=24.49 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
-.+|+||||.|||++...|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.69 E-value=0.071 Score=25.57 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999977999999948
Q 000523 181 TLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1445)
++++|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999398999999982
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.073 Score=25.50 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||+|++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.081 Score=25.21 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.07 Score=25.62 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.076 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.068 Score=25.71 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999977999999948
Q 000523 180 LTLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1445)
-++++|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.048 Score=26.71 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99974799984789975708
Q 000523 888 TALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lag 907 (1445)
++++|.+|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.58 E-value=0.088 Score=24.98 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.57 E-value=0.067 Score=25.74 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.45 E-value=0.091 Score=24.87 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.43 E-value=0.096 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.42 E-value=0.11 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 29999859999779999999489899
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
+..+|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.41 E-value=0.075 Score=25.42 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=0.091 Score=24.86 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.078 Score=25.31 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999977999999948
Q 000523 181 TLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1445)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=0.072 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++|+|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.31 E-value=0.076 Score=25.39 Aligned_cols=29 Identities=38% Similarity=0.661 Sum_probs=24.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84892999985999977999999948989
Q 000523 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 175 i~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+++..-+++.||||+|||+|.+++++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.27 E-value=0.084 Score=25.11 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
-++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.25 E-value=0.092 Score=24.83 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-+|++|.-.+|||||++.|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.088 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.077 Score=25.33 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.17 E-value=0.083 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999977999999948
Q 000523 180 LTLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1445)
-++++|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.16 E-value=0.089 Score=24.92 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.15 E-value=0.098 Score=24.65 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999859999779999999
Q 000523 181 TLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L 198 (1445)
++++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.15 E-value=0.088 Score=24.95 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=16.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999859999779999999489
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
|.=-++++|+..+|||||++.|.+.
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9718999958898099999999999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.13 E-value=0.11 Score=24.29 Aligned_cols=28 Identities=43% Similarity=0.527 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4892999985999977999999948989
Q 000523 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+|.-..+++||+|+|||.+.+.|+..+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.1 Score=24.50 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999779999999489
Q 000523 180 LTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
-++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.11 E-value=0.13 Score=23.92 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
++||.|+-||||||..+.|+.
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.09 E-value=0.098 Score=24.66 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.-+.|.||+|+|||++.+.||..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.095 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++|+|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.89 E-value=0.078 Score=25.32 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999747999847899757089
Q 000523 888 TALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr 908 (1445)
+.+-||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.85 E-value=0.099 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999747999847899757089
Q 000523 888 TALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 888 ~al~G~sGaGKTTLl~~Lagr 908 (1445)
+-+-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.83 E-value=0.093 Score=24.82 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
-+||+|..|+|||||.+.|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.82 E-value=0.067 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
-.+||+|-..+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.80 E-value=0.094 Score=24.77 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999977999999948
Q 000523 181 TLLLGPPSSGKTTLLLALAG 200 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1445)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999970
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.71 E-value=0.13 Score=23.92 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8189997479998478997570898
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
...+.|.||+|.||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.67 E-value=0.097 Score=24.69 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189997479998478997570898
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-.+.++|++|+|||||++.+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.11 Score=24.27 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.62 E-value=0.15 Score=23.41 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=14.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 929999859999779999999489
Q 000523 178 GRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 408999779978889999999985
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.58 E-value=0.069 Score=25.65 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++.|.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.1 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.15 Score=23.46 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
..++-||||+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 598888998758999999999846
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.50 E-value=0.1 Score=24.59 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89997479998478997570
Q 000523 887 LTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~La 906 (1445)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.41 E-value=0.16 Score=23.35 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.-.++.||+|+||||+.+.++..+-
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 3798889998759999999998210
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.096 Score=24.73 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.37 E-value=0.12 Score=23.99 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++|+|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.32 E-value=0.097 Score=24.69 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
.++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.24 E-value=0.13 Score=23.89 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 189997479998478997570
Q 000523 886 VLTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~La 906 (1445)
-.+.|+|.+|+|||||++-+.
T Consensus 7 ~KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 779999899998899999895
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.18 E-value=0.14 Score=23.58 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=41.8
Q ss_pred HHCCCEEEEECCCCCCCHHHH------HHHHHHHHHHHH-----CCCEEEEEECCCCHHHHHHHCEEEEEEC--CCEEEE
Q ss_conf 519978899399999999999------999999999884-----8998999946853999986461869924--959999
Q 000523 1014 VANPSIIFMDEPTSGLDARAA------AIVMRTVRNTVD-----TGRTVVCTIHQPSIDIFEAFDELFLMKR--GGQEIY 1080 (1445)
Q Consensus 1014 ~~~p~il~lDEPTsGLD~~~a------~~i~~~l~~~~~-----~g~tvi~tiHqps~~i~~~fD~illL~~--gG~~vY 1080 (1445)
-..|.|||+||-=+=...+.. ..+...+..... .+..||+|+++|.. .|.-++ .. =.+.++
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~~i~ 168 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDREVD 168 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCEEEE
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCCEEE
T ss_conf 6499499852111322578877770689998775001101234688117975799310-----252454-2463023237
Q ss_pred ECCCCCCHHHHHHHHHHC
Q ss_conf 769987501689998719
Q 000523 1081 VGPLGRHSCHLISYFEAI 1098 (1445)
Q Consensus 1081 ~Gp~g~~~~~~~~yF~~~ 1098 (1445)
++++... .-...++.+
T Consensus 169 ~~~P~~~--~R~~il~~~ 184 (258)
T d1e32a2 169 IGIPDAT--GRLEILQIH 184 (258)
T ss_dssp CCCCCHH--HHHHHHHHT
T ss_pred CCCCCHH--HHHHHHHHH
T ss_conf 8999988--999873220
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.11 E-value=0.1 Score=24.52 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.12 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.|+|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.13 Score=23.85 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.85 E-value=0.14 Score=23.61 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89997479998478997570
Q 000523 887 LTALMGVSGAGKTTLMDVLA 906 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~La 906 (1445)
.+.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.85 E-value=0.14 Score=23.57 Aligned_cols=24 Identities=50% Similarity=0.699 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
..+++||+|+|||-|.+.||..++
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 324418998637899999986443
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.67 E-value=0.15 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
.+.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.63 E-value=0.14 Score=23.62 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++|+|.+|+|||||++-+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.63 E-value=0.12 Score=24.02 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.62 E-value=0.22 Score=22.41 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6188189997479998478997570898
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 882 i~pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+|.--+|++|.-.||||||++.|.|..
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9997089999724886999999997041
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.48 E-value=0.15 Score=23.49 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||+|++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.47 E-value=0.14 Score=23.61 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=40.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99788993999999999999999999998848998999946853999986461869924959999769987501689998
Q 000523 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYF 1095 (1445)
Q Consensus 1016 ~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~g~~~~~~~~yF 1095 (1445)
+.+++++||.-. +...+...+...+.... ....+++++++.+. +... +.++ -+.+.+.|+.. .++..|.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-33366531474302-1067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 719
Q 000523 1096 EAI 1098 (1445)
Q Consensus 1096 ~~~ 1098 (1445)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.43 E-value=0.16 Score=23.22 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.27 E-value=0.13 Score=23.80 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18999747999847899757089
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr 908 (1445)
-.++|+|-..+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.26 E-value=0.13 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.13 Score=23.76 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974799984789975708
Q 000523 887 LTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lag 907 (1445)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.99 E-value=0.46 Score=20.28 Aligned_cols=31 Identities=48% Similarity=0.724 Sum_probs=27.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6784892999985999977999999948989
Q 000523 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
|-++.|++|.+-||+|||||||+..++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.18 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.15 Score=23.55 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.86 E-value=0.19 Score=22.81 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599997799999994898
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
-.+++||||.|||++...|+.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73998358754479999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.69 E-value=0.26 Score=21.87 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999985999977999999948989
Q 000523 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.+-.++++|-|-+|||||+|.|.|+-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.36 E-value=0.15 Score=23.38 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 818999747999847899757089
Q 000523 885 GVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 885 Ge~~al~G~sGaGKTTLl~~Lagr 908 (1445)
--.++++|.+|+|||||++-+.+.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 379999998997899999999719
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.27 E-value=0.23 Score=22.19 Aligned_cols=29 Identities=41% Similarity=0.621 Sum_probs=25.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 67848929999859999779999999489
Q 000523 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
|-++.|+++.+.||+|+|||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98666336999648874889999999998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.26 E-value=0.2 Score=22.69 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 881899974799984789975708
Q 000523 884 PGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 884 pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
|---++++|..++|||||++.|.+
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.25 E-value=0.35 Score=21.04 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999779999999489899
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=0.2 Score=22.65 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.12 E-value=0.19 Score=22.83 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97889939999999999999999999988489989999468539999864618699249599997699875016899987
Q 000523 1017 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 1096 (1445)
Q Consensus 1017 p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~g~~~~~~~~yF~ 1096 (1445)
.+++++||.- .+.......+.+.+.... ....++++.++++ .+... +..+ ...+.+-|+.. .++..+..
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l~ 168 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRIA 168 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCC-CCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCCC
T ss_conf 1899996632-000237899998863112-0023201267087-75999-----9988-75401235652--00011021
Q ss_pred HC
Q ss_conf 19
Q 000523 1097 AI 1098 (1445)
Q Consensus 1097 ~~ 1098 (1445)
.+
T Consensus 169 ~I 170 (227)
T d1sxjc2 169 NV 170 (227)
T ss_dssp HH
T ss_pred CC
T ss_conf 22
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.74 E-value=0.2 Score=22.68 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599997799999994898
Q 000523 181 TLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.++.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.71 E-value=0.22 Score=22.35 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189997479998478997570898
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
-++.|-|.=|||||||++-|....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.68 E-value=0.13 Score=23.80 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
++.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.67 E-value=0.22 Score=22.37 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.65 E-value=0.29 Score=21.58 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=21.8
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7761881899974799984789975708
Q 000523 880 GAFRPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 880 ~~i~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
..+-.|+..+|.|++|.|||||+..++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=0.24 Score=22.16 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=86.54 E-value=0.25 Score=22.00 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.+++|+..+|||||+..|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.39 E-value=0.21 Score=22.48 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=25.2
Q ss_pred CCCCEEECCCCCCCHH---HHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 8524222699899989---8999999999987703986999980
Q 000523 342 ALALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLL 382 (1445)
Q Consensus 342 ~~vl~lDEptsgLDs~---t~~~i~~~L~~~~~~~~~t~iisl~ 382 (1445)
+-|||.||..+=+.+. ......+.|+.....+.-.+|.+.+
T Consensus 116 ~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT 159 (387)
T d1qvra2 116 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT 159 (387)
T ss_dssp SEEEEECCC-------------------HHHHHTTCCCEEEEEC
T ss_pred CEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
T ss_conf 66987240888842777877413899999997378851666368
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.15 E-value=0.37 Score=20.87 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=24.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 67848929999859999779999999489
Q 000523 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
..+-.|+-.+|.|++|+|||||+.-++..
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.83 E-value=0.26 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189997479998478997570898
Q 000523 886 VLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 886 e~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
...++-|.-||||||+++.|+-..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.82 E-value=0.23 Score=22.30 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999859999779999999
Q 000523 181 TLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L 198 (1445)
++|+|+.++|||||+.+|
T Consensus 20 I~iiGhvd~GKTTL~d~L 37 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSL 37 (341)
T ss_dssp EEEECCGGGTHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999968888699999999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.71 E-value=0.25 Score=21.97 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999779999999489
Q 000523 181 TLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
++++|.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.65 E-value=0.35 Score=21.07 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1881899974799984789975708988
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
..+-.++++|...+|||||+|.|.|++.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.52 E-value=0.26 Score=21.95 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999977999999948989
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.+.|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.12 E-value=0.26 Score=21.86 Aligned_cols=49 Identities=4% Similarity=0.069 Sum_probs=35.8
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 5199788993999999-999999999999998848998999946853999
Q 000523 1014 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1062 (1445)
Q Consensus 1014 ~~~p~il~lDEPTsGL-D~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i 1062 (1445)
..+.++|++|+--.=. +......+..++-...+.|+.+|+|...|..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987631663899548751001
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.09 E-value=0.3 Score=21.48 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=21.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18818999747999847899757089
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr 908 (1445)
+|.-...++||+|.|||.|.+.|+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.99 E-value=0.26 Score=21.85 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1881899974799984789975708988
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
+.+.++.+.||.|.|||++...|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.29 E-value=0.36 Score=21.01 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599997799999994
Q 000523 181 TLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~La 199 (1445)
++++|+.++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=83.90 E-value=0.52 Score=19.96 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999985999977999999948989
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
.+..+.||+++|||++..+|...+.
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1899988998568999999999828
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.81 E-value=0.25 Score=22.00 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999779999999489899
Q 000523 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1445)
.+.|=|+-||||||+++.|+..+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999888778899999999998734
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.58 E-value=0.39 Score=20.72 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599997799999994
Q 000523 181 TLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~La 199 (1445)
++++|..|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsl~~r~~ 23 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMK 23 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999988899999884
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.36 E-value=0.32 Score=21.34 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999859999779999999
Q 000523 181 TLLLGPPSSGKTTLLLAL 198 (1445)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L 198 (1445)
++++|+.++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.27 E-value=0.41 Score=20.60 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999859999779999999489
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~ 201 (1445)
.+++|.|+.||||||..+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=83.26 E-value=0.47 Score=20.19 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299998599997799999994898
Q 000523 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1445)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1445)
.+..+.||+++|||+++++|...+
T Consensus 105 n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998589887789999999983
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.98 E-value=0.4 Score=20.64 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999747999847899757089
Q 000523 887 LTALMGVSGAGKTTLMDVLAGR 908 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr 908 (1445)
.+.++|.+|+|||||+.-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=82.55 E-value=0.23 Score=22.25 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=17.2
Q ss_pred EECCEEEEEECCCCCCHHH
Q ss_conf 8489299998599997799
Q 000523 175 IKPGRLTLLLGPPSSGKTT 193 (1445)
Q Consensus 175 i~pG~~~~ilGp~GsGKST 193 (1445)
++.|+.+++.+|+|||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred HHCCCCEEEEECCCCCHHH
T ss_conf 6469949999799997879
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=82.52 E-value=0.45 Score=20.33 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=24.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6784892999985999977999999948989
Q 000523 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1445)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1445)
+.-.|.-..++.||||+|||.|.++|++.+.
T Consensus 118 ~~~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp TEEEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1436886388877998508899999999863
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=82.52 E-value=0.41 Score=20.59 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6188189997479998478997570898
Q 000523 882 FRPGVLTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 882 i~pGe~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.+|+. ...+||+|.|||-|.+.||...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 78753-2441899863789999998644
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.37 E-value=0.36 Score=20.95 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1881899974799984789975708
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAG 907 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lag 907 (1445)
+|.--+|++|.-++|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=82.03 E-value=0.43 Score=20.49 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997479998478997570898
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRK 909 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~ 909 (1445)
.++|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.63 E-value=0.5 Score=20.05 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599997799999994
Q 000523 180 LTLLLGPPSSGKTTLLLALA 199 (1445)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1445)
-++++|+.++|||||...|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=81.19 E-value=0.42 Score=20.53 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=16.5
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48929999859999779999
Q 000523 176 KPGRLTLLLGPPSSGKTTLL 195 (1445)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL 195 (1445)
+.|...+..|.||+|||||-
T Consensus 12 ~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCCEEEEECCCCCCCCCCC
T ss_conf 99988999736879814221
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.87 E-value=0.32 Score=21.30 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899974799984789975708988
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
-..|+|++|.|||++..-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.78 E-value=0.34 Score=21.15 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 2223236988776798899899999998519978899399999999999999999999884899899994685
Q 000523 986 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1058 (1445)
Q Consensus 986 ~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqp 1058 (1445)
+.=.++..||.-.++++-..-+. +.+-.+++.| +..|+-+.+...+..+. +.+..+++.+...
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~-----~~D~allVVd-a~eGv~~qT~~~~~~a~----~~~~p~i~viNKi 158 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALR-----VTDGALVVVD-TIEGVCVQTETVLRQAL----GERIKPVVVINKV 158 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHH-----TCSEEEEEEE-TTTBSCHHHHHHHHHHH----HTTCEEEEEEECH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEEE-CCCCCCHHHHHHHHHHH----HCCCCEEEEEECC
T ss_conf 37999737873889999998875-----2372499986-56682046999999998----7699869998772
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=80.39 E-value=0.49 Score=20.12 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=17.2
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48929999859999779999
Q 000523 176 KPGRLTLLLGPPSSGKTTLL 195 (1445)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL 195 (1445)
+.|+..+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=80.31 E-value=0.26 Score=21.92 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899974799984789975708988
Q 000523 887 LTALMGVSGAGKTTLMDVLAGRKT 910 (1445)
Q Consensus 887 ~~al~G~sGaGKTTLl~~Lagr~~ 910 (1445)
-+.|.|+.|.|||||.+.+++...
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|